Change log for htslib package in Ubuntu

htslib (1.20+ds-1) unstable; urgency=medium

  * New upstream version 1.20+ds
  * d/copyright: update copyright year.
  * d/control: declare compliance to standards version 4.7.0.
  * Patch fix_float_precision: refresh.
  * testShebang.patch: unfuzz.
  * d/libhts3t64.symbols: introduce new upstream functions.

 -- Étienne Mollier <email address hidden>  Wed, 29 May 2024 12:25:07 +0200

Available diffs

• diff from 1.19+ds-1.1build3 (in Ubuntu) to 1.20+ds-1 (37.6 KiB)

htslib (1.19+ds-1.1build3) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 18:25:58 +0000

Available diffs

• diff from 1.19+ds-1.1build2 to 1.19+ds-1.1build3 (319 bytes)

htslib (1.19+ds-1.1build2) noble; urgency=medium

  * No-change rebuild against libcurl3t64-gnutls

 -- Steve Langasek <email address hidden>  Sat, 16 Mar 2024 06:59:31 +0000

Available diffs

• diff from 1.18+ds-1 (in Debian) to 1.19+ds-1.1build2 (105.6 KiB)
• diff from 1.19+ds-1.1build1 to 1.19+ds-1.1build2 (309 bytes)

htslib (1.19+ds-1.1build1) noble; urgency=medium

  * No-change rebuild against libssl3t64

 -- Steve Langasek <email address hidden>  Mon, 04 Mar 2024 18:12:45 +0000

Available diffs

• diff from 1.19+ds-1.1 (in Debian) to 1.19+ds-1.1build1 (506 bytes)

htslib (1.19+ds-1.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1062344

 -- Lukas Märdian <email address hidden>  Wed, 28 Feb 2024 10:41:39 +0000

Available diffs

• diff from 1.19+ds-1 to 1.19+ds-1.1 (9.2 KiB)

htslib (1.19+ds-1) unstable; urgency=medium

  * Migrate htslib 1.19 from experimental to unstable.

 -- Étienne Mollier <email address hidden>  Sat, 17 Feb 2024 11:42:52 +0100

Available diffs

• diff from 1.18+ds-1 to 1.19+ds-1 (95.6 KiB)

htslib (1.18+ds-1) unstable; urgency=medium

  * Migrate htslib 1.18 from experimental to unstable.

 -- Étienne Mollier <email address hidden>  Tue, 07 Nov 2023 19:46:30 +0100

Available diffs

• diff from 1.17+ds-1 to 1.18+ds-1 (91.5 KiB)

htslib (1.17+ds-1) unstable; urgency=medium

  * Migrate htslib to unstable.
  * d/control: declare libhts3 breaks samtools < 1.17.

 -- Étienne Mollier <email address hidden>  Thu, 22 Jun 2023 22:21:42 +0200

Available diffs

• diff from 1.16+ds-3 to 1.17+ds-1 (81.6 KiB)

htslib (1.16+ds-3) unstable; urgency=medium

  * d/rules: make sure libdir and plugindir are defined.
    Thanks to James Bonfield
  * d/libhts3.install: relocate plugins following fix at configure step.
  * d/*.install: remove dh-exec shebang.
  * d/control: remove build-dependency to dh-exec.
  * disable_plugin_loading_test.patch: remove; test is supposed to pass.
  * d/rules: do not erase LDFLAGS; fix the aforementioned test failure
    by restoring -rdynamic flag supposed to be passed to the linker.
  * d/patches/: remove unused patches.
  * trim-file-prefix.patch: add; improve reproducible build.

 -- Étienne Mollier <email address hidden>  Wed, 19 Oct 2022 22:25:57 +0200

Available diffs

• diff from 1.13+ds-2build2 (in Ubuntu) to 1.16+ds-3 (108.7 KiB)

htslib (1.10.2-3ubuntu0.1) focal; urgency=medium

  * Add d/p/515f6df-Remove-compressBound-assertions-PR-1258.patch in support
    of fixing 'zlib: compressBound() returns an incorrect result on z15'.
    Due a fuzz 2 a minor adjustment of the context was needed.
    (LP: #1961427)

 -- Frank Heimes <email address hidden>  Wed, 15 Jun 2022 16:45:11 +0200

Available diffs

• diff from 1.10.2-3 (in Debian) to 1.10.2-3ubuntu0.1 (2.1 KiB)

htslib (1.13+ds-2build2) kinetic; urgency=medium

  * No-change rebuild to pickup a newer LTO.

 -- Brian Murray <email address hidden>  Fri, 13 May 2022 13:22:01 -0700

Available diffs

• diff from 1.13+ds-2build1 to 1.13+ds-2build2 (318 bytes)

htslib (1.13+ds-2build1) jammy; urgency=medium

  * No-change rebuild against libssl3

 -- Steve Langasek <email address hidden>  Wed, 08 Dec 2021 23:33:39 +0000

Available diffs

• diff from 1.13+ds-2 (in Debian) to 1.13+ds-2build1 (510 bytes)

htslib (1.13+ds-2) unstable; urgency=medium

  * d/control: add myself to uploaders
  * d/control: libhts-dev breaks samtools (<< 1.13~)
  * d/control: refresh libhts-dev Breaks+Replaces
  * d/control: libhts-dev breaks ivar (<< 1.3.1~)

 -- Étienne Mollier <email address hidden>  Fri, 27 Aug 2021 22:02:59 +0200

Available diffs

• diff from 1.11-4 to 1.13+ds-2 (229.0 KiB)
• diff from 1.13+ds-1 to 1.13+ds-2 (780 bytes)

htslib (1.13+ds-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version
  * added libhtscodecs-dev as build-dependency
  * remove htscodecs folder from source tree (following advice
    by John Marshall - many thanks!)
  * Builds fine with autoconf > 2.71 (Closes: #978835).

  [ Andreas Tille ]
  * Standards-Version: 4.6.0 (routine-update)
  * Do not parse d/changelog (routine-update)
  * Remove constraints unnecessary since buster:
    + libhts3: Drop versioned constraint on python-pysam in Breaks.

 -- Andreas Tille <email address hidden>  Thu, 26 Aug 2021 18:33:04 +0200

htslib (1.11-4) unstable; urgency=medium

  * libhts3: Breaks+Replaces: libhts-dev (<< 1.11-3). Closes: #978094

 -- Michael R. Crusoe <email address hidden>  Sat, 02 Jan 2021 16:28:22 +0100

Available diffs

• diff from 1.11-3 to 1.11-4 (588 bytes)

htslib (1.11-3) unstable; urgency=medium

  [ Andreas Tille ]
  * No need to patch when using proper configure options
  * Install man5 as user rather than developer documentation
  * Fix description of tabix package
    Closes: #922860
  * Standards-Version: 4.5.1 (routine-update)
  * Update renamed lintian tag names in lintian overrides.
  * Somehow installation of htslib dir has changed

  [ Michael R. Crusoe ]
  * debian/upstream/metadata: add new pre-print

 -- Andreas Tille <email address hidden>  Thu, 24 Dec 2020 10:34:35 +0100

Available diffs

• diff from 1.11-2 to 1.11-3 (2.1 KiB)

htslib (1.11-2) unstable; urgency=medium

  * Enable plugins
    Closes: #971542
  * Add missing Depends: libcurl4-gnutls-dev, libdeflate-dev
  * Fix run-unit-test script
  * Fix autopkgtest

 -- Andreas Tille <email address hidden>  Mon, 05 Oct 2020 09:30:04 +0200

Available diffs

• diff from 1.10.2-5 to 1.11-2 (141.4 KiB)

htslib (1.10.2-5) unstable; urgency=medium

  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Remove default debian/gbp.conf
  * Install bgzip.1 manpage
  * Workaround issue with dh_missing

 -- Andreas Tille <email address hidden>  Mon, 03 Aug 2020 13:19:08 +0200

Available diffs

• diff from 1.10.2-4 to 1.10.2-5 (1.1 KiB)

htslib (1.10.2-4) unstable; urgency=medium

  * d/control: Added Rules-Requires-Root: no
  * Exported cram_to_bam function to compile sambamba, borrowed from
    http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics
    htslib-add-cram_to_bam.patch

 -- Steffen Moeller <email address hidden>  Sat, 04 Jul 2020 14:04:35 +0200

Available diffs

• diff from 1.10.2-3 to 1.10.2-4 (1.7 KiB)

htslib (1.10.2-3) unstable; urgency=medium

  [ Andreas Tille ]
  * d/copyright: Add Upstream-Contact

  [ Michael R. Crusoe ]
  * Patch from upstream for big-endian systems. Closes: #947462
  * Mark htslib-tests as Multi-Arch: foreign
  * Standards-Version: 4.5.0 (routine-update)
  * Set upstream metadata fields: Bug-Submit.
  * add Build-Depends-Package: libhts-dev to debian/libhts3.symbols
  * debian/rules: add hack to autoconf not forget MMAP with cross building
  * pass the same flags to test and install as build
  * debian/rules: match upstream's default flags
  * debian/libhts3.symbols: remove erronously exported symbols

 -- Michael R. Crusoe <email address hidden>  Thu, 13 Feb 2020 19:25:04 +0100

Available diffs

• diff from 1.10.2-2ubuntu2 (in Ubuntu) to 1.10.2-3 (10.2 KiB)

htslib (1.10.2-2ubuntu2) focal; urgency=medium

  * debian/patches/1023.patch:
    - cherry-pick upstream proposed patch for Big Endian fixes.

 -- Gianfranco Costamagna <email address hidden>  Thu, 13 Feb 2020 20:25:47 +0100

Available diffs

• diff from 1.10.2-2ubuntu1 to 1.10.2-2ubuntu2 (5.0 KiB)

htslib (1.10.2-2ubuntu1) focal; urgency=medium

  * Don't build for s390x anymore.

 -- Matthias Klose <email address hidden>  Fri, 31 Jan 2020 20:35:33 +0100

Available diffs

• diff from 1.9-12 (in Debian) to 1.10.2-2ubuntu1 (432.7 KiB)
• diff from 1.10.2-2 (in Debian) to 1.10.2-2ubuntu1 (649 bytes)

htslib (1.10.2-2) unstable; urgency=medium

  * htslib-test: breaks+replaces libhts-private-dev
  * libhts3: breaks libtabixpp << 1.0.0-5

 -- Michael R. Crusoe <email address hidden>  Sat, 21 Dec 2019 14:15:05 -0700

Available diffs

• diff from 1.10.2-1 to 1.10.2-2 (636 bytes)

htslib (1.10.2-1) unstable; urgency=medium

  * New upstream version
  * debian/source/options: ignore changes to aclocal.m4 config.h.in configure
  * debian/control: remove libhts-private-dev (Closes: #947066)

 -- Michael R. Crusoe <email address hidden>  Fri, 20 Dec 2019 09:57:05 -0800

Available diffs

• diff from 1.10.1-2 to 1.10.2-1 (17.7 KiB)

htslib (1.10.1-2) unstable; urgency=medium

  * Fix binary-arch vs binary-indep builds

 -- Michael R. Crusoe <email address hidden>  Wed, 18 Dec 2019 12:54:51 +0100

Available diffs

• diff from 1.10.1-1 to 1.10.1-2 (567 bytes)

htslib (1.10.1-1) unstable; urgency=medium

  * New upstream version
  * for some very strange reason /usr/include/htslib/cram/cram.h is using the
    private interface header.h.  This is provided now in the
    libhts-private-dev package rather than htslib-test
  * debhelper-compat 12
  * DEB_BUILD_OPTIONS allow override_dh_auto_test
  * Remove trailing whitespace in debian/rules
  * More verbose error reporting in case of failed tests
  * Fix Perl interpreter path
  * Fix permissions of script

 -- Andreas Tille <email address hidden>  Tue, 17 Dec 2019 14:38:13 +0100

Available diffs

• diff from 1.10-2 to 1.10.1-1 (22.2 KiB)

htslib (1.10-2) unstable; urgency=medium

  * Fix check for config.mk.
  * Simplified arch-independent build
  * libhts2 -> libhts3 to match the new SONAME
  * Update the symbols as well

 -- Michael R. Crusoe <email address hidden>  Fri, 13 Dec 2019 11:04:33 +0100

Available diffs

• diff from 1.10-1 to 1.10-2 (8.0 KiB)

htslib (1.10-1) unstable; urgency=medium

  * New upstream release.
  * Remove build path from packaged config.mk to make the build more reproducible.

 -- Michael R. Crusoe <email address hidden>  Mon, 09 Dec 2019 19:40:15 +0100

Available diffs

• diff from 1.9-12 to 1.10-1 (421.1 KiB)

htslib (1.9-12) unstable; urgency=medium

  * Fix for the autopkgtest on i386 means we can re-enable it! (Closes: #942580)

 -- Michael R. Crusoe <email address hidden>  Mon, 09 Dec 2019 19:06:02 +0100

Available diffs

• diff from 1.9-11 to 1.9-12 (1.4 KiB)

htslib (1.9-11) unstable; urgency=medium

  * Install README at request of upstream
  * Stop building on any-i386
    Closes: #927353

 -- Andreas Tille <email address hidden>  Wed, 24 Apr 2019 08:51:48 +0200

Available diffs

• diff from 1.9-10 to 1.9-11 (804 bytes)

htslib (1.9-10) unstable; urgency=medium

  * Bring the libdeflate, GCS, and S3 updates back to unstable.

 -- Michael R. Crusoe <email address hidden>  Wed, 16 Jan 2019 05:23:22 -0800

Available diffs

• diff from 1.7-2 to 1.9-10 (249.6 KiB)
• diff from 1.9-9 to 1.9-10 (698 bytes)

htslib (1.9-9) unstable; urgency=medium

  * Bring the ppc64el & i386 pkg-config enhancements to unstable.

 -- Michael R. Crusoe <email address hidden>  Tue, 15 Jan 2019 06:13:44 -0800

Available diffs

• diff from 1.9-8 to 1.9-9 (2.2 KiB)

htslib (1.9-8) unstable; urgency=medium

  * Disable optimization on ppc64el to unblock this and many other packages
    migration to testing.

 -- Michael R. Crusoe <email address hidden>  Mon, 31 Dec 2018 07:08:13 -0800

Available diffs

• diff from 1.9-7 to 1.9-8 (2.3 KiB)

htslib (1.9-7) unstable; urgency=medium

  * Bring i386 build enhancements to unstable.

 -- Michael R. Crusoe <email address hidden>  Wed, 19 Dec 2018 07:30:24 -0800

Available diffs

• diff from 1.9-6 to 1.9-7 (1.1 KiB)

htslib (1.9-6) unstable; urgency=medium

  * Revert libdeflate for DEFLATE based (de)compression and its crc32
    implementation.

 -- Michael R. Crusoe <email address hidden>  Wed, 05 Dec 2018 22:59:23 -0800

Available diffs

• diff from 1.9-5 to 1.9-6 (606 bytes)

htslib (1.9-5) unstable; urgency=medium

  * Add libdeflate for DEFLATE based (de)compression and its crc32
    implementation.
  * Re-add mipsel to tabix & libhts-dev as well. (Closes: #915404)

 -- Michael R. Crusoe <email address hidden>  Tue, 04 Dec 2018 20:56:12 -0800

Available diffs

• diff from 1.9-4 to 1.9-5 (986 bytes)

htslib (1.9-4) unstable; urgency=medium

  * Add Breaks: python-pysam (<< 0.15~), python3-pysam (<< 0.15~)
    (Thanks to Graham Inggs <email address hidden>)
    Closes: #911492

 -- Andreas Tille <email address hidden>  Sun, 02 Dec 2018 07:54:46 +0100

Available diffs

• diff from 1.9-3 to 1.9-4 (714 bytes)

htslib (1.9-3) unstable; urgency=medium

  * debian/control: drop *i386. Closes: #905438.

 -- Michael R. Crusoe <email address hidden>  Sun, 14 Oct 2018 09:53:04 -0700

htslib (1.7-2) unstable; urgency=medium

  * Move all needed files into htslib-test package
    Closes: #890303
  * Document how to test the package
  * Update symbols file

 -- Andreas Tille <email address hidden>  Wed, 14 Feb 2018 13:13:18 +0100

Available diffs

• diff from 1.6-4build1 (in Ubuntu) to 1.7-2 (45.1 KiB)
• diff from 1.7-1 to 1.7-2 (1.6 KiB)

htslib (1.7-1) unstable; urgency=medium

  * Team upload.

  * New upstream version.
  * Standards-Version: 4.1.3

  * win/* files no longer in upstream source tree, affecting -test package

 -- Steffen Moeller <email address hidden>  Mon, 12 Feb 2018 18:59:19 +0100

Available diffs

• diff from 1.6-4build1 (in Ubuntu) to 1.7-1 (43.9 KiB)

htslib (1.6-4build1) bionic; urgency=high

  * No change rebuild against openssl1.1.

 -- Dimitri John Ledkov <email address hidden>  Mon, 05 Feb 2018 16:49:52 +0000

Available diffs

• diff from 1.6-4 (in Debian) to 1.6-4build1 (529 bytes)

htslib (1.6-4) unstable; urgency=medium

  * Fix autopkgtest: Ship new files win/rand.c and win/rand.h
    in htslib-test (Closes: #866137)

 -- Graham Inggs <email address hidden>  Thu, 21 Dec 2017 15:03:36 +0000

Available diffs

• diff from 1.6-3ubuntu1 (in Ubuntu) to 1.6-4 (534 bytes)

htslib (1.6-3ubuntu1) bionic; urgency=medium

  * Fix autopkgtest: Ship new files win/rand.c and win/rand.h in htslib-test

 -- Graham Inggs <email address hidden>  Thu, 21 Dec 2017 06:44:58 +0000

Available diffs

• diff from 1.5-4ubuntu1 to 1.6-3ubuntu1 (49.7 KiB)
• diff from 1.6-3 (in Debian) to 1.6-3ubuntu1 (605 bytes)

htslib (1.6-3) unstable; urgency=medium

  * Ship a copy of cram headers in htslib-test instead of
    using symlinks (Closes: #866137)
  * Fix autopkgtest on i386 with GCC 7, see #881149

 -- Graham Inggs <email address hidden>  Wed, 20 Dec 2017 14:53:46 +0000

Available diffs

• diff from 1.5-4ubuntu1 (in Ubuntu) to 1.6-3 (49.7 KiB)

htslib (1.5-4ubuntu1) bionic; urgency=medium

  * Fix autopkgtest on i386

 -- Graham Inggs <email address hidden>  Fri, 24 Nov 2017 13:49:50 +0000

Available diffs

• diff from 1.5-1 (in Debian) to 1.5-4ubuntu1 (5.7 KiB)
• diff from 1.5-4 (in Debian) to 1.5-4ubuntu1 (647 bytes)

htslib (1.5-4) unstable; urgency=medium

  * Fix build on i386 (Thanks to Graham Inggs <email address hidden>)
    Closes: #881149

 -- Andreas Tille <email address hidden>  Mon, 20 Nov 2017 22:42:09 +0100

Available diffs

• diff from 1.5-3 to 1.5-4 (486 bytes)

htslib (1.5-3) unstable; urgency=medium

  * Team upload

  [ Diane Trout ]
  * Restore libhts2.symbols and update for changes from 1.4.1 and 1.5
    versions of htslib. (Closes: #879886)

  [ Graham Inggs ]
  * Update 877670.patch as it was applied upstream

 -- Diane Trout <email address hidden>  Fri, 10 Nov 2017 12:38:12 +0100

Available diffs

• diff from 1.5-2 to 1.5-3 (4.8 KiB)

htslib (1.5-2) unstable; urgency=medium

  * Apply patch provided by Graham Inggs <email address hidden> to fix FTBFS
    on armel armhf and ppc64el of bcftools
    Closes: #877670
  * Standards-Version: 4.1.1

 -- Andreas Tille <email address hidden>  Wed, 08 Nov 2017 08:24:26 +0100

htslib (1.5-1) unstable; urgency=medium

  * Team upload

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.0.0 (no changes needed)
  * do not parse d/changelog explicitly
  * hardening=+all
  * install htslib*.mk files that are used in bcftools

  [ Steffen Moeller ]
  * [upstream/metadata] Added reference to OMICtools

  [ Matthias Klumpp ]
  * libhts-dev: Depend on missing liblzma-dev
  * Wrap and sort

 -- Matthias Klumpp <email address hidden>  Thu, 03 Aug 2017 22:56:42 -0400

Available diffs

• diff from 1.4.1-5 to 1.5-1 (38.5 KiB)

htslib (1.4.1-5) unstable; urgency=medium

  * Team upload
  * Dereference symlinks to fix autopkgtest (Closes: #866137)

 -- Graham Inggs <email address hidden>  Wed, 19 Jul 2017 10:37:52 +0200

Available diffs

• diff from 1.3.2-2ubuntu1 (in Ubuntu) to 1.4.1-5 (225.9 KiB)
• diff from 1.4.1-4ubuntu1 (in Ubuntu) to 1.4.1-5 (786 bytes)

htslib (1.4.1-4ubuntu1) artful; urgency=medium

  * Fix autopkgtest (Closes: #866137)

 -- Graham Inggs <email address hidden>  Tue, 18 Jul 2017 13:19:17 +0200

Available diffs

• diff from 1.4.1-2ubuntu1 to 1.4.1-4ubuntu1 (1.8 KiB)

htslib (1.4.1-2ubuntu1) artful; urgency=medium

  * Merge from Debian unstable.  Remaining changes:
    - Skip test-suites on armhf i386 and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

Available diffs

• diff from 1.3.2-2ubuntu1 to 1.4.1-2ubuntu1 (225.1 KiB)

htslib (1.3.2-2ubuntu1) zesty; urgency=medium

  * Sync on Debian unstable. Remaining change:
    + Skip test-suites on armhf, powerpc and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

 -- Bhavani Shankar <email address hidden>  Mon, 16 Jan 2017 11:16:17 +0530

Available diffs

• diff from 1.3.2-1ubuntu1 to 1.3.2-2ubuntu1 (1.5 KiB)

htslib (1.3.2-1ubuntu1) zesty; urgency=low

  * Merge from Debian unstable.  Remaining changes:
    - Skip test-suites on armhf, powerpc and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

 -- Gianfranco Costamagna <email address hidden>  Mon, 07 Nov 2016 15:47:36 +0100

Available diffs

• diff from 1.3.1-3ubuntu1 to 1.3.2-1ubuntu1 (2.8 KiB)
• diff from 1.3.2-1 (in Debian) to 1.3.2-1ubuntu1 (1.4 KiB)

htslib (1.3.2-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <email address hidden>  Fri, 04 Nov 2016 12:58:19 +0100

htslib (1.3.1-3ubuntu1) yakkety; urgency=low

  * Merge from Debian unstable.  Remaining changes:
    - Skip test-suites on armhf, powerpc and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

 -- Gianfranco Costamagna <email address hidden>  Tue, 06 Sep 2016 06:55:39 +0200

Available diffs

• diff from 1.3.1-2ubuntu1 to 1.3.1-3ubuntu1 (1.4 KiB)

htslib (1.3.1-2ubuntu1) yakkety; urgency=low

  * Merge from Debian unstable.  Remaining changes:
    - Skip test-suites on armhf, powerpc and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

 -- Gianfranco Costamagna <email address hidden>  Sat, 13 Aug 2016 12:57:43 +0200

Available diffs

• diff from 1.3.1-1ubuntu1 to 1.3.1-2ubuntu1 (1.2 KiB)

htslib (1.3.1-1ubuntu1) yakkety; urgency=low

  * Merge from Debian unstable.  Remaining changes:
    - Skip test-suites on armhf, powerpc and s390x due to broken endiannes
      and alignment issues. See https://github.com/samtools/htslib/issues/98
      for details. Hopefully upstream will agree on a concept and merge it
      soon.

 -- Gianfranco Costamagna <email address hidden>  Thu, 28 Apr 2016 14:59:56 +0200

Available diffs

• diff from 1.2.1-2ubuntu1 to 1.3.1-1ubuntu1 (477.5 KiB)
• diff from 1.3.1-1 (in Debian) to 1.3.1-1ubuntu1 (1.3 KiB)

htslib (1.3.1-1) unstable; urgency=medium

  36bf59a Merge tag '1.3.1' into debian/unstable
  559f8b4 Remove add_largefile.patch, applied upstream.
  7163afb Update symbols file. Missing _vcf_parse_format@Base and fai_read@Base.
  c2c1df3 Build-depend on libcurl4-gnutls-dev and libssl-dev.
  3b219b8 Enable libcurl.
  9101580 Conforms to the Policy version 3.9.8.

 -- Charles Plessy <email address hidden>  Mon, 25 Apr 2016 22:28:11 +0900

htslib (1.2.1-2ubuntu1) xenial; urgency=high

  * Skip test-suites on armhf, powerpc and s390x due to broken endiannes
    and alignment issues. See https://github.com/samtools/htslib/issues/98
    for details. Hopefully upstream will agree on a concept and merge it
    soon.

 -- Dimitri John Ledkov <email address hidden>  Tue, 15 Dec 2015 15:20:11 +0000

Available diffs

• diff from 1.2.1-2 (in Debian) to 1.2.1-2ubuntu1 (1023 bytes)

htslib (1.2.1-2) unstable; urgency=medium

  * Team upload
  * Enable build on hurd-i386
    Closes: #793512
  * More verbose description vor -dev and -test package
  * Fix lintian override
  * Verified Mayhem bug report which is solved in this version
    Closes: #716376

 -- Andreas Tille <email address hidden>  Wed, 09 Dec 2015 17:00:47 +0100

Available diffs

• diff from 1.2.1-1 to 1.2.1-2 (3.1 KiB)

htslib (1.2.1-1) unstable; urgency=medium

  0662716 Merge tag '1.2.1' into debian/unstable
  084f27d Install NEWS as upstream changelog.
  316fb96 Override a Lintian false positive.
  3363679 Clean test directory.
  69bf167 Corrected a typo in tabix description.

 -- Charles Plessy <email address hidden>  Mon, 25 May 2015 13:35:03 +0900

Available diffs

• diff from 1.1-1 to 1.2.1-1 (117.9 KiB)

htslib (1.1-1) unstable; urgency=medium


  1357fbd Merge tag '1.1' into debian/unstable
  87549cd Updated symbols file.  One symbol is missing.
  873ea9b Removed orphan paragraph in machine-readable copyright file.
  49de2b9 Allow parallel build.
  7fe3bb5 Normalise control file (VCS-Browser, Pre-Depends).
  0e5e9e6 Conforms to Policy 3.9.6.

 -- Charles Plessy <email address hidden>  Wed, 24 Sep 2014 21:24:11 +0900

Available diffs

• diff from 0.2.0~rc3-1 to 1.1-1 (178.1 KiB)

htslib (0.2.0~rc3-1) unstable; urgency=low


  * Initial release. (Closes: #729282)

 -- Charles Plessy <email address hidden>  Sat, 16 Nov 2013 15:35:03 +0900