htslib 1.9-12 source package in Ubuntu
Changelog
htslib (1.9-12) unstable; urgency=medium * Fix for the autopkgtest on i386 means we can re-enable it! (Closes: #942580) -- Michael R. Crusoe <email address hidden> Mon, 09 Dec 2019 19:06:02 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.9-12.dsc | 2.3 KiB | 307c896ecc5374a18d07e2026cd1219029d745ce16fa2414d5238493ab3c6d68 |
| htslib_1.9.orig.tar.gz | 1.2 MiB | d2e3cde77b8f874b37453c63390cd992901266336e9f70e871ef42402510467f |
| htslib_1.9-12.debian.tar.xz | 14.6 KiB | ff8e8a37c464a3d92fae5446ce3d24ebc663ced1466a5b0ef58f22ead31f5a54 |
Available diffs
- diff from 1.9-11 to 1.9-12 (1.4 KiB)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
- libhts-private-dev: No summary available for libhts-private-dev in ubuntu focal.
No description available for libhts-private-dev in ubuntu focal.
- libhts2: No summary available for libhts2 in ubuntu focal.
No description available for libhts2 in ubuntu focal.
- libhts2-dbgsym: No summary available for libhts2-dbgsym in ubuntu focal.
No description available for libhts2-dbgsym in ubuntu focal.
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix
