htslib 1.9-11 source package in Ubuntu
Changelog
htslib (1.9-11) unstable; urgency=medium
* Install README at request of upstream
* Stop building on any-i386
Closes: #927353
-- Andreas Tille <email address hidden> Wed, 24 Apr 2019 08:51:48 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64 arm64 armel armhf mips mips64el mipsel ppc64el s390x alpha hppa ia64 m68k powerpc powerpcspe ppc64 riscv64 sh4 sparc64 all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.9-11.dsc | 2.8 KiB | 48cb6fbe9a08c3e81952ba35c690691da54b71c97207992f0a3a11ad6b19fee6 |
| htslib_1.9.orig.tar.gz | 1.2 MiB | d2e3cde77b8f874b37453c63390cd992901266336e9f70e871ef42402510467f |
| htslib_1.9-11.debian.tar.xz | 14.6 KiB | b4e684b21107eaff55108d33fde4a95c972a0db3992f3701eb32761835794dd6 |
Available diffs
- diff from 1.9-10 to 1.9-11 (804 bytes)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: No summary available for libhts-dev in ubuntu eoan.
No description available for libhts-dev in ubuntu eoan.
- libhts-private-dev: No summary available for libhts-private-dev in ubuntu eoan.
No description available for libhts-private-dev in ubuntu eoan.
- libhts2: No summary available for libhts2 in ubuntu focal.
No description available for libhts2 in ubuntu focal.
- libhts2-dbgsym: No summary available for libhts2-dbgsym in ubuntu focal.
No description available for libhts2-dbgsym in ubuntu focal.
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix
