Ubuntu
htslib package

htslib 1.10.1-1 source package in Ubuntu

Changelog

htslib (1.10.1-1) unstable; urgency=medium

  * New upstream version
  * for some very strange reason /usr/include/htslib/cram/cram.h is using the
    private interface header.h.  This is provided now in the
    libhts-private-dev package rather than htslib-test
  * debhelper-compat 12
  * DEB_BUILD_OPTIONS allow override_dh_auto_test
  * Remove trailing whitespace in debian/rules
  * More verbose error reporting in case of failed tests
  * Fix Perl interpreter path
  * Fix permissions of script

 -- Andreas Tille <email address hidden>  Tue, 17 Dec 2019 14:38:13 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
htslib_1.10.1-1.dsc 2.4 KiB cdfcb82d10f3801cfab2f605f0723ceae20f2991aa10c92f692433f49d175396
htslib_1.10.1.orig.tar.bz2 1.3 MiB 7d047301ead800e3c83a72f573fb760f1912c40da30abc74f4da4cf279ebf802
htslib_1.10.1-1.debian.tar.xz 14.9 KiB 9eb31366e5e0ef3b337f9c38a7d4492b5a268dfda511cf0ff5fde979d2fe7098

Available diffs

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.

libhts-private-dev: No summary available for libhts-private-dev in ubuntu focal.

No description available for libhts-private-dev in ubuntu focal.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This version of tabix is built from the HTSlib source.

tabix-dbgsym: debug symbols for tabix