htslib 1.19+ds-1 source package in Ubuntu
Changelog
htslib (1.19+ds-1) unstable; urgency=medium * Migrate htslib 1.19 from experimental to unstable. -- Étienne Mollier <email address hidden> Sat, 17 Feb 2024 11:42:52 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.19+ds-1.dsc | 2.4 KiB | cbd22bfb2e80a075ccee1c4d389a4d77489996a37c78300c1fe0e1437540c144 |
| htslib_1.19+ds.orig.tar.bz2 | 1.5 MiB | e740e5a68db806a4c8252009348da5f0cc1bcdd134f702e4e1cce724e855f777 |
| htslib_1.19+ds-1.debian.tar.xz | 20.6 KiB | e123a79305fdbe075d84e114410f231fc282b2fc66f908d7548d9e9b571aa373 |
Available diffs
- diff from 1.18+ds-1 to 1.19+ds-1 (95.6 KiB)
No changes file available.
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
.
For compatibility with sambamba, the internal routine cram_to_bam was
exported, hereto adopting a patch found in guix.
- libhts3: No summary available for libhts3 in ubuntu noble.
No description available for libhts3 in ubuntu noble.
- libhts3-dbgsym: No summary available for libhts3-dbgsym in ubuntu noble.
No description available for libhts3-dbgsym in ubuntu noble.
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This package is built from the HTSlib source, and provides the bgzip, htsfile,
and tabix tools.
- tabix-dbgsym: debug symbols for tabix
