https://launchpad.net/~pythoneers/+archive/ubuntu/python3.11/+build/24561569 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-031 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 20 Oct 20:22:30 ntpdate[1816]: adjust time server 10.211.37.1 offset -0.006437 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 --image-type chroot /home/buildd/filecache-default/2cc3432c5dbb6c77bd354aeee826c054f6445c78 Creating target for build PACKAGEBUILD-24561569 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 Starting target for build PACKAGEBUILD-24561569 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 'deb http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main restricted universe multiverse' 'deb http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic main' 'deb http://ppa.launchpadcontent.net/pythoneers/python3.11-numpy/ubuntu kinetic main' Overriding sources.list in build-PACKAGEBUILD-24561569 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 Adding trusted keys to build-PACKAGEBUILD-24561569 pub rsa1024/224D9D15EE176F89 2009-02-24 [SC] Key fingerprint = B407 A109 E998 1948 D6FA 93ED 224D 9D15 EE17 6F89 uid Launchpad PPA for Ubuntu Pythoneers RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 Updating target for build PACKAGEBUILD-24561569 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic InRelease [17.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:4 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic InRelease [17.6 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [267 kB] Get:7 http://ppa.launchpadcontent.net/pythoneers/python3.11-numpy/ubuntu kinetic InRelease [17.6 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main arm64 Packages [1363 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [509 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/restricted arm64 Packages [48.6 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/restricted Translation-en [18.0 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/universe arm64 Packages [14.2 MB] Get:13 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 Packages [228 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5791 kB] Get:15 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main Translation-en [143 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/multiverse arm64 Packages [194 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/multiverse Translation-en [112 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 Packages [3408 B] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [1996 B] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted arm64 Packages [756 B] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted Translation-en [3560 B] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/universe arm64 Packages [64.4 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [27.3 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse arm64 Packages [924 B] Get:25 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse Translation-en [1184 B] Get:26 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 Packages [20.9 kB] Get:27 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main Translation-en [13.3 kB] Get:28 http://ppa.launchpadcontent.net/pythoneers/python3.11-numpy/ubuntu kinetic/main arm64 Packages [880 B] Get:29 http://ppa.launchpadcontent.net/pythoneers/python3.11-numpy/ubuntu kinetic/main Translation-en [524 B] Fetched 23.6 MB in 5s (5068 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: sgml-base Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common cpp-12 g++-12 gcc-12 gcc-12-base libapparmor1 libapt-pkg6.0 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libgcc-12-dev libgcc-s1 libgnutls30 libgomp1 libgprofng0 libhwasan0 libidn2-0 libitm1 liblsan0 libp11-kit0 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev lto-disabled-list readline-common systemd systemd-sysv tzdata usrmerge 56 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 74.0 MB of archives. After this operation, 581 kB of additional disk space will be used. 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12.2.0-3ubuntu1 [10.9 MB] Get:20 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libseccomp2 arm64 2.5.4-1ubuntu2 [52.6 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main arm64 libstdc++-12-dev arm64 12.2.0-3ubuntu1 [2154 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgcc-12-dev arm64 12.2.0-3ubuntu1 [1157 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main arm64 gcc-12 arm64 12.2.0-3ubuntu1 [19.1 MB] Get:24 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libselinux1 arm64 3.4-1build1 [96.1 kB] Get:25 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libsemanage-common all 3.4-1build1 [21.4 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main arm64 cpp-12 arm64 12.2.0-3ubuntu1 [9579 kB] Get:27 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libsemanage2 arm64 3.4-1build1 [101 kB] Get:28 http://ftpmaster.internal/ubuntu 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http://ftpmaster.internal/ubuntu kinetic/main arm64 bash arm64 5.2-1ubuntu2 [771 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main arm64 libc-bin arm64 2.36-0ubuntu4 [592 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd-sysv arm64 251.4-1ubuntu7 [11.2 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd arm64 251.4-1ubuntu7 [2712 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsystemd-shared arm64 251.4-1ubuntu7 [1617 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsystemd0 arm64 251.4-1ubuntu7 [318 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main arm64 libudev1 arm64 251.4-1ubuntu7 [78.4 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main arm64 libapt-pkg6.0 arm64 2.5.3 [859 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libidn2-0 arm64 2.3.3-1build1 [63.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main arm64 libp11-kit0 arm64 0.24.1-1ubuntu2 [225 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgnutls30 arm64 3.7.7-2ubuntu2 [931 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main arm64 apt arm64 2.5.3 [1343 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main arm64 usrmerge all 29ubuntu2 [55.8 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main arm64 readline-common all 8.2-1 [55.1 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main arm64 libreadline8 arm64 8.2-1 [149 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsqlite3-0 arm64 3.39.3-1 [644 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main arm64 tzdata all 2022e-0ubuntu2 [400 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpng16-16 arm64 1.6.38-2 [182 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main arm64 lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.0 MB in 3s (26.3 MB/s) (Reading database ... 13593 files and 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Universal Time is now: Thu Oct 20 20:23:02 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpng16-16:arm64 (1.6.38-2) ... Setting up libatomic1:arm64 (12.2.0-3ubuntu1) ... Setting up libsystemd-shared:arm64 (251.4-1ubuntu7) ... Setting up usrmerge (29ubuntu2) ... Setting up libubsan1:arm64 (12.2.0-3ubuntu1) ... Setting up libhwasan0:arm64 (12.2.0-3ubuntu1) ... Setting up libasan8:arm64 (12.2.0-3ubuntu1) ... Setting up libtsan2:arm64 (12.2.0-3ubuntu1) ... Setting up libbinutils:arm64 (2.39-3ubuntu1) ... Setting up libc-dev-bin (2.36-0ubuntu4) ... Setting up readline-common (8.2-1) ... Setting up libcc1-0:arm64 (12.2.0-3ubuntu1) ... Setting up liblsan0:arm64 (12.2.0-3ubuntu1) ... Setting up libitm1:arm64 (12.2.0-3ubuntu1) ... Setting up libctf0:arm64 (2.39-3ubuntu1) ... Setting up libreadline8:arm64 (8.2-1) ... Setting up systemd (251.4-1ubuntu7) ... Initializing machine ID from random generator. Setting up libgprofng0:arm64 (2.39-3ubuntu1) ... Setting up libgcc-12-dev:arm64 (12.2.0-3ubuntu1) ... Setting up libc6-dev:arm64 (2.36-0ubuntu4) ... Setting up systemd-sysv (251.4-1ubuntu7) ... Setting up libstdc++-12-dev:arm64 (12.2.0-3ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.39-3ubuntu1) ... Setting up binutils (2.39-3ubuntu1) ... Setting up gcc-12 (12.2.0-3ubuntu1) ... Setting up g++-12 (12.2.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24561569 arm64 kinetic -c chroot:build-PACKAGEBUILD-24561569 --arch=arm64 --dist=kinetic --nolog python-pybedtools_0.9.0-1build2.dsc Initiating build PACKAGEBUILD-24561569 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-031.buildd +==============================================================================+ | python-pybedtools 0.9.0-1build2 (arm64) Thu, 20 Oct 2022 20:23:04 +0000 | +==============================================================================+ Package: python-pybedtools Version: 0.9.0-1build2 Source Version: 0.9.0-1build2 Distribution: kinetic Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24561569/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-pybedtools-NaEbuK/resolver-G6ah3N' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-pybedtools_0.9.0-1build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-pybedtools-NaEbuK/python-pybedtools-0.9.0' with '<>' I: NOTICE: Log filtering will replace 'build/python-pybedtools-NaEbuK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [474 B] Get:5 copy:/<>/apt_archive ./ Packages [555 B] Fetched 1986 B in 0s (87.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu71 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc3 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-brotli python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-fonttools python3-fs python3-gast python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal r-base-core sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils xml-core zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo cython-doc dh-make flit python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libxsimd-doc m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 python-nose-doc gfortran python-numpy-doc python-pandas-doc python3-statsmodels python-pil-doc python-ply-doc python-psutil-doc subversion python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc tex-gyre texlive-fonts-recommended texlive-plain-generic texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.11-venv python3.11-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libjson-xs-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables python3-olefile isympy-common r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bedtools blt bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libcairo2 libcurl3-gnutls libcurl4 libdatrie1 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 libice6 libicu71 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc3 libmagic-mgc libmagic1 libmd0 libmpdec3 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev libopenblas0 libopenblas0-pthread libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-override-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxsimd-dev libxslt1.1 libxss1 libxt6 libyaml-0-2 m4 man-db media-types po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-all-dev python3-appdirs python3-attr python3-babel python3-beniget python3-brotli python3-certifi python3-chardet python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-docutils python3-fonttools python3-fs python3-gast python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-markupsafe python3-matplotlib python3-minimal python3-more-itertools python3-mpmath python3-nose python3-numpy python3-numpydoc python3-packaging python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy python3-ply python3-psutil python3-py python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pythran python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-snowballstemmer python3-sphinx python3-sympy python3-tk python3-tomli python3-tz python3-ufolib2 python3-unicodedata2 python3-urllib3 python3-yaml python3-zipp python3.10 python3.10-dev python3.10-minimal python3.11 python3.11-dev python3.11-minimal r-base-core sbuild-build-depends-main-dummy sphinx-common tk8.6-blt2.5 ucf unicode-data unzip x11-common xdg-utils xml-core zip zlib1g-dev 0 upgraded, 221 newly installed, 0 to remove and 0 not upgraded. Need to get 180 MB of archives. After this operation, 856 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [774 B] Get:2 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-minimal arm64 3.10.6-1ubuntu1~ppa1 [39.1 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-minimal arm64 3.10.7-1 [798 kB] Get:4 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3-stdlib arm64 3.10.6-1ubuntu1~ppa1 [22.0 kB] Get:5 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3 arm64 3.10.6-1ubuntu1~ppa1 [38.7 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main arm64 libexpat1 arm64 2.4.8-2 [71.5 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10-minimal arm64 3.10.7-1 [1989 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main arm64 media-types all 8.0.0 [24.9 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmpdec3 arm64 2.5.1-2build2 [89.0 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-stdlib arm64 3.10.7-1 [1762 kB] Get:11 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3.11-minimal arm64 3.11.0~rc2-1ubuntu1~ppa1 [875 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10 arm64 3.10.7-1 [497 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmd0 arm64 1.0.4-2 [23.7 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main arm64 libbsd0 arm64 0.11.6-1 [43.6 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main arm64 libelf1 arm64 0.187-4 [51.1 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfribidi0 arm64 1.0.8-2.1ubuntu1 [26.3 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main arm64 libglib2.0-0 arm64 2.74.0-3 [1444 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main arm64 libicu71 arm64 71.1-3ubuntu1 [10.5 MB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main arm64 libyaml-0-2 arm64 0.2.5-1 [51.8 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main arm64 ucf all 3.0043 [56.1 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main arm64 bsdextrautils arm64 2.38-4ubuntu1 [69.6 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmagic-mgc arm64 1:5.41-4 [257 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmagic1 arm64 1:5.41-4 [85.0 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main arm64 file arm64 1:5.41-4 [21.6 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main arm64 gettext-base arm64 0.21-8 [36.8 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main arm64 libuchardet0 arm64 0.0.7-1build2 [77.3 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main arm64 groff-base arm64 1.22.4-8build1 [917 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main arm64 libnghttp2-14 arm64 1.49.0-1 [72.1 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpipeline1 arm64 1.5.6-2 [23.3 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpsl5 arm64 0.21.0-1.2build2 [58.3 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxau6 arm64 1:1.0.9-1build5 [7624 B] Get:33 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu5 [10.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxcb1 arm64 1.15-1 [47.6 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main arm64 libx11-data all 2:1.8.1-2 [118 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main arm64 libx11-6 arm64 2:1.8.1-2 [646 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxext6 arm64 2:1.3.4-1build1 [31.1 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main arm64 man-db arm64 2.10.2-2 [1175 kB] Get:39 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3.11-minimal arm64 3.11.0~rc2-1ubuntu1~ppa1 [2206 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main arm64 m4 arm64 1.4.19-1 [240 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main arm64 autoconf all 2.71-2 [338 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main arm64 autopoint all 0.21-8 [421 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/universe arm64 bedtools arm64 2.30.0+dfsg-2ubuntu1 [527 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtcl8.6 arm64 8.6.12+dfsg-1build1 [987 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfreetype6 arm64 2.12.1+dfsg-3 [381 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main arm64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main arm64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfontconfig1 arm64 2.13.1-4.4ubuntu1 [132 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxft2 arm64 2.3.4-1 [40.9 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtk8.6 arm64 8.6.12-1build1 [777 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1build2 [625 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main arm64 blt arm64 2.5.3+dfsg-4.1build2 [4838 B] Get:58 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdebhelper-perl all 13.9.1ubuntu1 [66.4 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtool all 2.4.7-4 [166 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main arm64 dh-autoreconf all 20 [16.1 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsub-override-perl all 0.09-3 [9756 B] Get:63 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main arm64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:65 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdw1 arm64 0.187-4 [243 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main arm64 dwz arm64 0.14-1build2 [102 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main arm64 gettext arm64 0.21-8 [842 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main arm64 debhelper all 13.9.1ubuntu1 [939 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-lib2to3 all 3.10.7-1 [77.5 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-distutils all 3.10.7-1 [139 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main arm64 xml-core all 0.18+nmu1 [21.6 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main arm64 docutils-common all 0.17.1+dfsg-2 [117 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main arm64 fontconfig arm64 2.13.1-4.4ubuntu1 [182 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/universe arm64 fonts-lyx all 2.3.6.1-1 [167 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main arm64 libblas3 arm64 3.10.1-2 [140 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main arm64 libboost-dev arm64 1.74.0.3ubuntu7 [3490 B] Get:80 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpixman-1-0 arm64 0.40.0-1build4 [160 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] Get:83 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcairo2 arm64 1.16.0-5ubuntu2 [613 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-6ubuntu2 [21.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsasl2-2 arm64 2.1.28+dfsg-6ubuntu2 [57.3 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-1ubuntu1 [180 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main arm64 libssh-4 arm64 0.9.6-2build1 [184 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcurl3-gnutls arm64 7.85.0-1 [280 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcurl4 arm64 7.85.0-1 [286 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdatrie1 arm64 0.2.13-2 [19.8 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdeflate0 arm64 1.12-1 [72.0 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main arm64 libexpat1-dev arm64 2.4.8-2 [123 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgfortran5 arm64 12.2.0-3ubuntu1 [417 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgraphite2-3 arm64 1.3.14-1build2 [68.9 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main arm64 libharfbuzz0b arm64 2.7.4-1ubuntu5 [349 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libhtscodecs2 arm64 1.2.2-1 [60.5 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libhts3 arm64 1.13+ds-2build2 [376 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main arm64 libimagequant0 arm64 2.17.0-1 [34.4 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjpeg-turbo8 arm64 2.1.2-0ubuntu1 [129 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjpeg8 arm64 8c-2ubuntu10 [2264 B] Get:103 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [118 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjson-perl all 4.09000-1 [82.4 kB] Get:108 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libbrotli1 arm64 1.0.9-2build7 [313 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libopenblas0-pthread arm64 0.3.20+ds-2 [4943 kB] Get:110 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 cython3 arm64 0.29.30-1ubuntu2 [1673 kB] Get:111 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 libxml2 arm64 2.9.14+dfsg-1build1 [799 kB] Get:112 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 dh-python all 5.20221001build1 [117 kB] Get:113 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libboost1.74-dev arm64 1.74.0-17ubuntu2~ppa2 [9616 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblapack3 arm64 3.10.1-2 [1997 kB] Get:115 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3-dev arm64 3.10.6-1ubuntu1~ppa1 [22.3 kB] Get:116 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3.11-stdlib arm64 3.11.0~rc2-1ubuntu1~ppa1 [1788 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/universe arm64 liblbfgsb0 arm64 3.0+dfsg.3-11 [26.7 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblcms2-2 arm64 2.13.1-1 [157 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblerc3 arm64 3.0+ds-1ubuntu1 [109 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libopenblas0 arm64 0.3.20+ds-2 [6078 B] Get:121 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libopenblas-pthread-dev arm64 0.3.20+ds-2 [3220 kB] Get:122 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3.11 arm64 3.11.0~rc2-1ubuntu1~ppa1 [2164 kB] Get:123 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3.11-dev arm64 3.11.0~rc2-1ubuntu1~ppa1 [5123 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libopenblas-dev arm64 0.3.20+ds-2 [18.4 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/main arm64 libthai-data all 0.1.29-1build1 [162 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic/main arm64 libthai0 arm64 0.1.29-1build1 [18.4 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpango-1.0-0 arm64 1.50.10+ds-1 [222 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpangoft2-1.0-0 arm64 1.50.10+ds-1 [48.7 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpangocairo-1.0-0 arm64 1.50.10+ds-1 [34.5 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpaper1 arm64 1.1.28build2 [13.6 kB] Get:131 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpaper-utils arm64 1.1.28build2 [8498 B] Get:132 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10 arm64 3.10.7-1 [1880 kB] Get:133 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 libpython3-all-dev arm64 3.10.6-1ubuntu1~ppa1 [930 B] Get:134 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python-matplotlib-data all 3.5.2-2build2~ppa1 [2949 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-4.1ubuntu1 [162 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-dev arm64 3.10.7-1 [4406 kB] Get:137 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3.11 arm64 3.11.0~rc2-1ubuntu1~ppa1 [601 kB] Get:138 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-all arm64 3.10.6-1ubuntu1~ppa1 [918 B] Get:139 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-dev arm64 3.10.6-1ubuntu1~ppa1 [26.0 kB] Get:140 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3.11-dev arm64 3.11.0~rc2-1ubuntu1~ppa1 [615 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libqhull-r8.0 arm64 2020.2-5 [188 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main arm64 libraqm0 arm64 0.7.0-4ubuntu1 [11.6 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjbig0 arm64 2.1-3.1build3 [28.8 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/main arm64 libwebp7 arm64 1.2.2-2 [192 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtiff5 arm64 4.4.0-4ubuntu3 [182 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/main arm64 libwebpdemux2 arm64 1.2.2-2 [9948 B] Get:148 http://ftpmaster.internal/ubuntu kinetic/main arm64 libwebpmux3 arm64 1.2.2-2 [20.6 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libxsimd-dev arm64 8.1.0-7 [90.7 kB] Get:150 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxslt1.1 arm64 1.1.35-1 [161 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxt6 arm64 1:1.2.1-1 [171 kB] Get:152 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-all-dev arm64 3.10.6-1ubuntu1~ppa1 [928 B] Get:153 http://ftpmaster.internal/ubuntu kinetic/main arm64 python-babel-localedata all 2.8.0+dfsg.1-7 [4982 kB] Get:154 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-brotli arm64 1.0.9-2build7 [316 kB] Get:155 http://ppa.launchpadcontent.net/pythoneers/python3.11-numpy/ubuntu kinetic/main arm64 python3-numpy arm64 1:1.21.5-1ubuntu1~ppa1 [5545 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10-dev arm64 3.10.7-1 [507 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-appdirs all 1.4.4-2 [11.4 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-attr all 22.1.0-1 [48.5 kB] Get:159 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-tz all 2022.2.1-1 [32.5 kB] Get:160 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-babel all 2.8.0+dfsg.1-7 [85.1 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-gast all 0.5.2-2 [9394 B] Get:162 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-beniget all 0.4.1-2 [9904 B] Get:163 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-certifi all 2022.6.15-2 [156 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-chardet all 4.0.0-2 [109 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-cycler all 0.11.0-1 [8156 B] Get:166 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-six all 1.16.0-4 [12.4 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-roman all 3.3-1 [10.6 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-docutils all 0.17.1+dfsg-2 [387 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-ply all 3.11-5 [47.5 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-ufolib2 all 0.13.1+dfsg1-1 [32.2 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-mpmath all 1.2.1-2 [419 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-sympy all 1.10.1-3 [4394 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-fs all 2.4.16-1 [91.8 kB] Get:176 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-unicodedata2 arm64 14.0.0+ds2-1ubuntu1 [362 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/universe arm64 unicode-data all 15.0.0-1 [8262 kB] Get:178 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-pythran arm64 0.11.0+ds-7build1 [427 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-idna all 3.3-1 [49.3 kB] Get:180 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-imagesize all 1.4.1-1 [6844 B] Get:181 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-more-itertools all 8.10.0-2 [47.9 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-zipp all 1.0.0-4 [5548 B] Get:183 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-importlib-metadata all 4.6.4-1 [16.2 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] Get:185 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-jinja2 all 3.0.3-1 [108 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic/main arm64 libopenjp2-7 arm64 2.5.0-1 [167 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-tk arm64 3.10.7-1 [109 kB] Get:188 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-pyparsing all 3.0.7-2 [82.6 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-packaging all 21.3-1.1 [30.6 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-nose all 1.3.7-8 [117 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/main arm64 sphinx-common all 4.5.0-4 [679 kB] Get:192 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-scipy arm64 1.8.1-10build1 [16.4 MB] Get:193 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-alabaster all 0.7.12-1 [17.8 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-pygments all 2.12.0+dfsg-2 [766 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-urllib3 all 1.26.9-1 [98.8 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-requests all 2.27.1+dfsg-1ubuntu2 [50.3 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-snowballstemmer all 2.2.0-1build1 [60.2 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-sphinx all 4.5.0-4 [546 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-numpydoc all 1.3.1-1 [43.7 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pluggy all 1.0.0+repack-1 [15.1 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pysam arm64 0.17.0+ds-2build1 [1701 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-tomli all 2.0.1-1 [16.6 kB] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pytest all 7.1.2-2ubuntu1 [219 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-setuptools all 59.6.0-1.2 [339 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/main arm64 zip arm64 3.0-12build2 [173 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/main arm64 unzip arm64 6.0-27ubuntu1 [170 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:208 http://ftpmaster.internal/ubuntu kinetic/universe arm64 r-base-core arm64 4.2.1-3 [28.1 MB] Get:209 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-lxml arm64 4.9.1-1build1 [1745 kB] Get:210 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-lz4 arm64 4.0.0+dfsg-1build1 [27.3 kB] Get:211 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-fonttools arm64 4.34.4-1build1 [866 kB] Get:212 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-markupsafe arm64 2.0.1-2build2 [13.9 kB] Get:213 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-kiwisolver arm64 1.3.2-1build2 [46.6 kB] Get:214 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-pil arm64 9.2.0-1build1 [487 kB] Get:215 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-pil.imagetk arm64 9.2.0-1build1 [78.6 kB] Get:216 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-matplotlib arm64 3.5.2-2build2~ppa1 [7538 kB] Get:217 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-pandas-lib arm64 1.3.5+dfsg-5ubuntu1~ppa1 [6032 kB] Get:218 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-pandas all 1.3.5+dfsg-5ubuntu1~ppa1 [2697 kB] Get:219 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-psutil arm64 5.9.0-1build2 [193 kB] Get:220 http://ppa.launchpadcontent.net/pythoneers/python3.11-fixes/ubuntu kinetic/main arm64 python3-py all 1.11.0-0ubuntu1~ppa1 [95.3 kB] Get:221 http://ppa.launchpadcontent.net/pythoneers/python3.11/ubuntu kinetic/main arm64 python3-yaml arm64 5.4.1-1ubuntu2 [157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 180 MB in 29s (6168 kB/s) Selecting previously unselected package libpython3.10-minimal:arm64. 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Selecting previously unselected package r-base-core. Preparing to unpack .../210-r-base-core_4.2.1-3_arm64.deb ... Unpacking r-base-core (4.2.1-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../211-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:arm64 (1.2.2-1) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:arm64 (1.5.6-2) ... Setting up libgraphite2-3:arm64 (1.3.14-1build2) ... Setting up liblcms2-2:arm64 (2.13.1-1) ... Setting up libpixman-1-0:arm64 (0.40.0-1build4) ... Setting up libicu71:arm64 (71.1-3ubuntu1) ... Setting up libxau6:arm64 (1:1.0.9-1build5) ... Setting up libpsl5:arm64 (0.21.0-1.2build2) ... Setting up libboost1.74-dev:arm64 (1.74.0-17ubuntu2~ppa2) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libdatrie1:arm64 (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libglib2.0-0:arm64 (2.74.0-3) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.6.1-1) ... Setting up unzip (6.0-27ubuntu1) ... Setting up libdebhelper-perl (13.9.1ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build7) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:arm64 (1.49.0-1) ... Setting up libmagic1:arm64 (1:5.41-4) ... Setting up libdeflate0:arm64 (1.12-1) ... Setting up gettext-base (0.21-8) ... Setting up m4 (1.4.19-1) ... Setting up libqhull-r8.0:arm64 (2020.2-5) ... Setting up file (1:5.41-4) ... Setting up libjbig0:arm64 (2.1-3.1build3) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-6ubuntu2) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:arm64 (8.1.0-7) ... Setting up zip (3.0-12build2) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.10.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.4.8-2) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.8.1-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up liblerc3:arm64 (3.0+ds-1ubuntu1) ... Setting up libfribidi0:arm64 (1.0.8-2.1ubuntu1) ... Setting up libimagequant0:arm64 (2.17.0-1) ... Setting up libtcl8.6:arm64 (8.6.12+dfsg-1build1) ... Setting up autopoint (0.21-8) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:arm64 (2.1.2-0ubuntu1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-6ubuntu2) ... Setting up libssh-4:arm64 (0.9.6-2build1) ... Setting up libgfortran5:arm64 (12.2.0-3ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up libwebp7:arm64 (1.2.2-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up libmd0:arm64 (1.0.4-2) ... Setting up xml-core (0.18+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1build2) ... Setting up libjson-perl (4.09000-1) ... Setting up libmpdec3:arm64 (2.5.1-2build2) ... Setting up libopenjp2-7:arm64 (2.5.0-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libharfbuzz0b:arm64 (2.7.4-1ubuntu5) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libboost-dev:arm64 (1.74.0.3ubuntu7) ... Setting up libpython3.11-minimal:arm64 (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python-matplotlib-data (3.5.2-2build2~ppa1) ... Setting up libwebpmux3:arm64 (1.2.2-2) ... Setting up libbsd0:arm64 (0.11.6-1) ... Setting up libelf1:arm64 (0.187-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1build1) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up bedtools (2.30.0+dfsg-2ubuntu1) ... Setting up libjs-underscore (1.13.3~dfsg+~1.11.4-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up python3.11-minimal (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up libpaper1:arm64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:arm64 (2:1.0.10-1build2) ... Setting up libdw1:arm64 (0.187-4) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:arm64 (3.10.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-8) ... Setting up libopenblas0-pthread:arm64 (0.3.20+ds-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libwebpdemux2:arm64 (1.2.2-2) ... Setting up libpython3.11-stdlib:arm64 (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:arm64 (3.10.7-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libraqm0:arm64 (0.7.0-4ubuntu1) ... Setting up libjs-sphinxdoc (4.5.0-4) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up libopenblas0:arm64 (0.3.20+ds-2) ... Setting up groff-base (1.22.4-8build1) ... Setting up libxslt1.1:arm64 (1.1.35-1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:arm64 (7.85.0-1) ... Setting up libx11-6:arm64 (2:1.8.1-2) ... Setting up libtiff5:arm64 (4.4.0-4ubuntu3) ... Setting up libsm6:arm64 (2:1.2.3-1build2) ... Setting up libpython3-stdlib:arm64 (3.10.6-1ubuntu1~ppa1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-11) ... Setting up libopenblas-pthread-dev:arm64 (0.3.20+ds-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up python3.11 (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up libpython3.10:arm64 (3.10.7-1) ... Setting up python3.10 (3.10.7-1) ... Setting up libpython3.11:arm64 (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:arm64 (7.85.0-1) ... Setting up python3 (3.10.6-1ubuntu1~ppa1) ... Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (2.0.1-2build2) ... Setting up python3-psutil (5.9.0-1build2) ... Setting up python3-tz (2022.2.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-1) ... Setting up libopenblas-dev:arm64 (0.3.20+ds-2) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (3.0.7-2) ... Setting up python3-certifi (2022.6.15-2) ... Setting up python3-snowballstemmer (2.2.0-1build1) ... Setting up libpython3.11-dev:arm64 (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up python3-brotli (1.0.9-2build7) ... Setting up sphinx-common (4.5.0-4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.3.2-1build2) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.30-1ubuntu2) ... Setting up libpython3.10-dev:arm64 (3.10.7-1) ... Setting up libxt6:arm64 (1:1.2.1-1) ... Setting up python3-urllib3 (1.26.9-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3.10-dev (3.10.7-1) ... Setting up python3-lxml:arm64 (4.9.1-1build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libxss1:arm64 (1:1.2.3-1build2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.10.7-1) ... Setting up python3-appdirs (1.4.4-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.7-1) ... Setting up dh-python (5.20221001build1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.10.1-3) ... Setting up python3-attr (22.1.0-1) ... Setting up libhts3:arm64 (1.13+ds-2build2) ... Setting up python3-pysam (0.17.0+ds-2build1) ... Setting up libpython3-dev:arm64 (3.10.6-1ubuntu1~ppa1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-tomli (2.0.1-1) ... Setting up python3-py (1.11.0-0ubuntu1~ppa1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.0+dfsg-1build1) ... Setting up python3.11-dev (3.11.0~rc2-1ubuntu1~ppa1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-unicodedata2 (14.0.0+ds2-1ubuntu1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.10.6-1ubuntu1~ppa1) ... Setting up python3-yaml (5.4.1-1ubuntu2) ... Setting up debhelper (13.9.1ubuntu1) ... Setting up python3-zipp (1.0.0-4) ... Setting up python3-nose (1.3.7-8) ... Setting up python3-fs (2.4.16-1) ... Setting up python3-beniget (0.4.1-2) ... Setting up python3-jinja2 (3.0.3-1) ... Setting up python3-pygments (2.12.0+dfsg-2) ... Setting up python3-packaging (21.3-1.1) ... Setting up python3-chardet (4.0.0-2) ... Setting up libpython3-all-dev:arm64 (3.10.6-1ubuntu1~ppa1) ... Setting up python3-dev (3.10.6-1ubuntu1~ppa1) ... Setting up python3-requests (2.27.1+dfsg-1ubuntu2) ... Setting up python3-numpy (1:1.21.5-1ubuntu1~ppa1) ... Setting up python3-all-dev (3.10.6-1ubuntu1~ppa1) ... Setting up python3-importlib-metadata (4.6.4-1) ... Setting up python3-pytest (7.1.2-2ubuntu1) ... Setting up python3-pandas-lib:arm64 (1.3.5+dfsg-5ubuntu1~ppa1) ... Setting up python3-pandas (1.3.5+dfsg-5ubuntu1~ppa1) ... Setting up python3-pythran (0.11.0+ds-7build1) ... Setting up python3-scipy (1.8.1-10build1) ... Setting up python3-fonttools (4.34.4-1build1) ... Setting up python3-pil:arm64 (9.2.0-1build1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... Processing triggers for sgml-base (1.30) ... Setting up libfontconfig1:arm64 (2.13.1-4.4ubuntu1) ... Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.4-1) ... Setting up libtk8.6:arm64 (8.6.12-1build1) ... Setting up libpango-1.0-0:arm64 (1.50.10+ds-1) ... Setting up libcairo2:arm64 (1.16.0-5ubuntu2) ... Setting up docutils-common (0.17.1+dfsg-2) ... Setting up libpangoft2-1.0-0:arm64 (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:arm64 (1.50.10+ds-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build2) ... Setting up blt (2.5.3+dfsg-4.1build2) ... Setting up python3-tk:arm64 (3.10.7-1) ... Setting up python3-pil.imagetk:arm64 (9.2.0-1build1) ... Setting up r-base-core (4.2.1-3) ... Creating config file /etc/R/Renviron with new version Setting up python3-matplotlib (3.5.2-2build2~ppa1) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.17.1+dfsg-2) ... Setting up python3-sphinx (4.5.0-4) ... Setting up python3-numpydoc (1.3.1-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-131-generic #147-Ubuntu SMP Fri Oct 14 17:09:03 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.39-3ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-3ubuntu1 gcc-12_12.2.0-3ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-3ubuntu1 libstdc++6_12.2.0-3ubuntu1 linux-libc-dev_5.19.0-21.21 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2ubuntu3 base-passwd_3.6.0 bash_5.2-1ubuntu2 bedtools_2.30.0+dfsg-2ubuntu1 binutils_2.39-3ubuntu1 binutils-aarch64-linux-gnu_2.39-3ubuntu1 binutils-common_2.39-3ubuntu1 blt_2.5.3+dfsg-4.1build2 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-3ubuntu1 cython3_0.29.30-1ubuntu2 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.9.1ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20221001build1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 docutils-common_0.17.1+dfsg-2 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 fontconfig_2.13.1-4.4ubuntu1 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build1 fonts-lyx_2.3.6.1-1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-3ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-3ubuntu1 gcc-12-base_12.2.0-3ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.35-3ubuntu1 gpg-agent_2.2.35-3ubuntu1 gpgconf_2.2.35-3ubuntu1 gpgv_2.2.35-3ubuntu1 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.64 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1ubuntu3 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-3ubuntu1 libassuan0_2.5.5-4 libatomic1_12.2.0-3ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39-3ubuntu1 libblas3_3.10.1-2 libblkid1_2.38-4ubuntu1 libboost-dev_1.74.0.3ubuntu7 libboost1.74-dev_1.74.0-17ubuntu2~ppa2 libbrotli1_1.0.9-2build7 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.8.3-1build1 libcap2_1:2.44-1build3 libcc1-0_12.2.0-3ubuntu1 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libgraphite2-3_1.3.14-1build2 libgssapi-krb5-2_1.20-1 libharfbuzz0b_2.7.4-1ubuntu5 libhogweed6_3.8.1-2 libhts3_1.13+ds-2build2 libhtscodecs2_1.2.2-1 libhwasan0_12.2.0-3ubuntu1 libice6_2:1.0.10-1build2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libimagequant0_2.17.0-1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.25-1 libitm1_12.2.0-3ubuntu1 libjbig0_2.1-3.1build3 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-sphinxdoc_4.5.0-4 libjs-underscore_1.13.3~dfsg+~1.11.4-1 libjson-c5_0.16-1 libjson-perl_4.09000-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3ubuntu1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblapack3_3.10.1-2 liblbfgsb0_3.0+dfsg.3-11 liblcms2-2_2.13.1-1 libldap-2.5-0_2.5.13+dfsg-1ubuntu1 liblerc3_3.0+ds-1ubuntu1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-3ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 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tzdata_2022e-0ubuntu2 ubuntu-keyring_2021.03.26 ucf_3.0043 unicode-data_15.0.0-1 unzip_6.0-27ubuntu1 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu3 xml-core_0.18+nmu1 xz-utils_5.2.5-2.1 zip_3.0-12build2 zlib1g_1:1.2.11.dfsg-4.1ubuntu1 zlib1g-dev_1:1.2.11.dfsg-4.1ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pybedtools Binary: pybedtools-bin, python3-pybedtools, python-pybedtools-doc Architecture: any all Version: 0.9.0-1build2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Steffen Moeller Homepage: https://daler.github.io/pybedtools/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pybedtools Vcs-Git: https://salsa.debian.org/med-team/python-pybedtools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev Package-List: pybedtools-bin deb python optional arch=all python-pybedtools-doc deb doc optional arch=all python3-pybedtools deb python optional arch=any Checksums-Sha1: ca9bfd341bff054241f8ef7bf2d49ca09eadfa43 12497249 python-pybedtools_0.9.0.orig.tar.gz 2807ad489fc89e2c47d0ebded5493708e41534a4 29200 python-pybedtools_0.9.0-1build2.debian.tar.xz Checksums-Sha256: d0ea55325ba4cb5bd6da9d497f27f6af5aa7ae65f5b97053514ab05ff3cd532d 12497249 python-pybedtools_0.9.0.orig.tar.gz c915ebab5309ec9f478e6913d97ef21cb7cef679835b49988f23cf4a67858efe 29200 python-pybedtools_0.9.0-1build2.debian.tar.xz Files: b7ef52fdb2fde7ec2ed3bf7e7ae181e3 12497249 python-pybedtools_0.9.0.orig.tar.gz 28f1b5f0b328f87aff69f98602d5e5a3 29200 python-pybedtools_0.9.0-1build2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmNRqQ4ACgkQr8/sjmac 4cIhtBAAmdcXpcr2ub3L2mT7ZnqEKc0o2ljhlhdMu4W2c1vDBTYzv0LbkgOe8cBc wFCYoyIamtS8BG7dEY0S3HFct1LUs6ufRUhenRJNHhdK32q72tdlZjRAYxFKYXEx dZ0LaKkeV7Ti5VRiDSFyiHT2RvsK9rJy42xqcPh6kORf4QzXpYncrSpnjGKQRzRZ fej08c3qKYIHC5KzDhYwatrzThcwq0dCfpdAVBVy/efD67jDI8sO3961W7gZV9M9 w3xjjx0gXXw0mAlsteybMVdntDIWftkRbCkJaSy2fvXj+XVymQ1a+NNghSZdssKw zcZNNZ2pmcv73yiI6KCbAMJwROVleLM7AUEHKs+vwIVmTSV+D1DvssDyVVL0/tCl 8AVhMSjpmb6+JvDKCjyohKehNYVvwQ8f3svcA9k6WWpjByUjB/dr9izelnej5Zie gI6n8sQ8c0EeWjMpZErGepqEiOIgeQrEv27AlnQEzyNRBAteNIXqPIT/6SdXxOoR ydeUw4xWXbU2WyVkeg044qwI+MtuVfhU7pQg3b8Hkctz5vdaS3WBNHQtEF6mD9or 0ZEGDENuo8oCnU/B0i75+mDeJGKlTg6HBgfy0wvGRYvbU5nMzkw+h4dAfTat0bbY wIHC5OKQX69/8MerNS9xtoyVH1iT0KHRPvbfvERu8bEFm2ma4k8= =FGXc -----END PGP SIGNATURE----- gpgv: Signature made Thu Oct 20 20:01:18 2022 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./python-pybedtools_0.9.0-1build2.dsc dpkg-source: info: extracting python-pybedtools in /<> dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.9.0-1build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying add_missing_shebang.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24561569 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24561569 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24561569 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.9.0-1build2 dpkg-buildpackage: info: source distribution kinetic dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config I: pybuild base:240: python3.10 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' python3 setup.py cythonize running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:240: /usr/bin/python3.11 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/settings.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/stats.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/paths.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/logger.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test creating /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib creating /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/_Window.pyx -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.cpp -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/test/data/gdc.gff -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/genome.fa -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test running build_ext building 'pybedtools.cbedtools' extension C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build creating build/temp.linux-arm64-3.11 creating build/temp.linux-arm64-3.11/pybedtools creating build/temp.linux-arm64-3.11/pybedtools/include compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' aarch64-linux-gnu-gcc: pybedtools/cbedtools.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.11/pybedtools/cbedtools.o build/temp.linux-arm64-3.11/pybedtools/include/bedFile.o build/temp.linux-arm64-3.11/pybedtools/include/fileType.o build/temp.linux-arm64-3.11/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so building 'pybedtools.featurefuncs' extension C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' aarch64-linux-gnu-gcc: pybedtools/featurefuncs.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.11/pybedtools/featurefuncs.o build/temp.linux-arm64-3.11/pybedtools/include/bedFile.o build/temp.linux-arm64-3.11/pybedtools/include/fileType.o build/temp.linux-arm64-3.11/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/settings.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/stats.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/paths.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/logger.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/_Window.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools creating /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include copying pybedtools/test/data/gdc.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/genome.fa -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test running build_ext building 'pybedtools.cbedtools' extension C compiler: aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-arm64-3.10 creating build/temp.linux-arm64-3.10/pybedtools creating build/temp.linux-arm64-3.10/pybedtools/include compile options: '-Ipybedtools/include/ -I/usr/include/python3.10 -c' aarch64-linux-gnu-gcc: pybedtools/cbedtools.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/pybedtools/cbedtools.o build/temp.linux-arm64-3.10/pybedtools/include/bedFile.o build/temp.linux-arm64-3.10/pybedtools/include/fileType.o build/temp.linux-arm64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-aarch64-linux-gnu.so building 'pybedtools.featurefuncs' extension C compiler: aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Ipybedtools/include/ -I/usr/include/python3.10 -c' aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp aarch64-linux-gnu-gcc: pybedtools/featurefuncs.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/pybedtools/featurefuncs.o build/temp.linux-arm64-3.10/pybedtools/include/bedFile.o build/temp.linux-arm64-3.10/pybedtools/include/fileType.o build/temp.linux-arm64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-aarch64-linux-gnu.so python3 setup.py develop --user running develop /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:158: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. warnings.warn( /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension C compiler: aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-aarch64-3.10 creating build/temp.linux-aarch64-3.10/pybedtools creating build/temp.linux-aarch64-3.10/pybedtools/include compile options: '-Ipybedtools/include/ -I/usr/include/python3.10 -c' aarch64-linux-gnu-gcc: pybedtools/cbedtools.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-3.10/pybedtools/cbedtools.o build/temp.linux-aarch64-3.10/pybedtools/include/bedFile.o build/temp.linux-aarch64-3.10/pybedtools/include/fileType.o build/temp.linux-aarch64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/cbedtools.cpython-310-aarch64-linux-gnu.so building 'pybedtools.featurefuncs' extension C compiler: aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC compile options: '-Ipybedtools/include/ -I/usr/include/python3.10 -c' aarch64-linux-gnu-gcc: pybedtools/featurefuncs.cpp aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:748: pybedtools/include/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-3.10/pybedtools/featurefuncs.o build/temp.linux-aarch64-3.10/pybedtools/include/bedFile.o build/temp.linux-aarch64-3.10/pybedtools/include/fileType.o build/temp.linux-aarch64-3.10/pybedtools/include/gzstream.o -lstdc++ -lz -o /<>/pybedtools/featurefuncs.cpython-310-aarch64-linux-gnu.so Creating /<>/fakehome/.local/lib/python3.10/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.9.0 to easy-install.pth file Installed /<> Processing dependencies for pybedtools==0.9.0 Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.17.0 Best match: pysam 0.17.0 Adding pysam 0.17.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.9.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v4.5.0 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /<>/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /<>/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /<>/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /<>/docs/source/pybedtools.featurefuncs.add_color.rst, /<>/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /<>/docs/source/pybedtools.featurefuncs.extend_fields.rst, /<>/docs/source/pybedtools.featurefuncs.five_prime.rst, /<>/docs/source/pybedtools.featurefuncs.greater_than.rst, /<>/docs/source/pybedtools.featurefuncs.less_than.rst, /<>/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /<>/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 157 added, 0 changed, 0 removed reading sources... [ 0%] 3-brief-examples reading sources... [ 1%] FAQs reading sources... [ 1%] autodoc_source /usr/lib/python3/dist-packages/numpydoc/docscrape.py:440: UserWarning: Unknown section Example in the docstring of decorated in /<>/pybedtools/bedtool.py. warn(msg) /usr/lib/python3/dist-packages/numpydoc/docscrape.py:440: UserWarning: Unknown section Example in the docstring of tag_bedpe in /<>/pybedtools/contrib/long_range_interaction.py. warn(msg) reading sources... [ 2%] autodocs/pybedtools.bedtool.BedTool /usr/lib/python3/dist-packages/numpydoc/docscrape.py:440: UserWarning: Unknown section Example in the docstring of decorated in /<>/pybedtools/bedtool.py. warn(msg) reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits reading sources... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate reading sources... [ 5%] autodocs/pybedtools.bedtool.BedTool.any_hits reading sources... 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Possible hints: * ModuleNotFoundError: No module named 'pybedtools.contrib.plotting.Track'; 'pybedtools.contrib.plotting' is not a package * AttributeError: type object 'Track' has no attribute 'Track' * ImportError: * KeyError: 'Track' * ModuleNotFoundError: No module named 'Track' * AttributeError: type object 'Track' has no attribute 'colorbar' /<>/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 0%] 3-brief-examples writing output... [ 1%] FAQs writing output... [ 1%] autodoc_source writing output... [ 2%] autodocs/pybedtools.bedtool.BedTool writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits writing output... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate writing output... 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Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:28: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:20: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/pybedtools/bedtool.py:docstring of pybedtools.bedtool.BedTool._log_to_history..decorated:16: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/default-arguments.rst:35: WARNING: Could not lex literal_block as "python". Highlighting skipped. /<>/docs/source/topical-design-principles.rst:120: WARNING: unknown option: mergeBed -i /<>/docs/source/topical-design-principles.rst:127: WARNING: unknown option: -i generating indices... genindex py-modindex done highlighting module code... [ 7%] pybedtools highlighting module code... [ 15%] pybedtools.bedtool highlighting module code... 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The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/<>' dh_auto_test -a -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3.11 setup.py install --root /<>/debian/python3-pybedtools running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/debian/python3-pybedtools creating /<>/debian/python3-pybedtools/usr creating /<>/debian/python3-pybedtools/usr/lib creating /<>/debian/python3-pybedtools/usr/lib/python3.11 creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigwig.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigbed.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/genome_registry.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_len_leak.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/tfuncs.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cases.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_1.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_pathlib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/genome.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/d.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/gchart-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/stats.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_1.py to test_1.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/stats.py to stats.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/paths.py to paths.cpython-311.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc running install_egg_info Copying pybedtools.egg-info to /<>/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/python3-pybedtools running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pybedtools/version.py -> /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/debian/python3-pybedtools/usr/lib/python3.10 creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigwig.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/plotting.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/bigbed.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/venn_maker.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/genome_registry.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/settings.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/parallel.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/bedtool.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.pxd -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/version.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cbedtools.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_len_leak.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_iter.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/tfuncs.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_gzip_support.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_issues.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_helpers.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/genomepy_integration.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_cases.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_1.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_contrib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_merge215.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/regression_tests.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/mpl-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/test_pathlib.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/c.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/reads.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg19.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.links.html -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.igv_script -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/m1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/v.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/x.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue_121.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.cram -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/issue319.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.b.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/venn.c.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test.fa.fai -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/small.fastq -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/exons.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/expand_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/gdc.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/y.bam -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/genome.fa -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/164.gtf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/a.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/data/d.gff -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/test/gchart-expected.png -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/cbedtools.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/stats.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/filenames.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/_Window.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools creating /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/fileType.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/gzstream.cpp -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/include/bedFile.h -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/include copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/featurefuncs.pyx -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/__init__.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/paths.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools copying /<>/.pybuild/cpython3_3.10_pybedtools/build/pybedtools/logger.py -> /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/settings.py to settings.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/parallel.py to parallel.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/helpers.py to helpers.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/bedtool.py to bedtool.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/version.py to version.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_1.py to test_1.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/stats.py to stats.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/filenames.py to filenames.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/paths.py to paths.cpython-310.pyc byte-compiling /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools/logger.py to logger.cpython-310.pyc running install_egg_info Copying pybedtools.egg-info to /<>/debian/python3-pybedtools/usr/lib/python3.10/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=pybuild dh_sphinxdoc -a -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 952b1bf148851688ae9ea655d584e2be59f94845 debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 95169de3a3dc76d171846658a64feda2cf008100 debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/cbedtools.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e1eec62971698ad4444a2feb6eaf74066a50151d debugedit: debian/python3-pybedtools/usr/lib/python3/dist-packages/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ed23763461bb2a7bb9daa43cb182de23544fc079 dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-1build2_arm64.deb'. dpkg-genbuildinfo --build=any -O../python-pybedtools_0.9.0-1build2_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../python-pybedtools_0.9.0-1build2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-10-20T20:30:30Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-pybedtools_0.9.0-1build2_arm64.changes: ---------------------------------------------- Format: 1.8 Date: Thu, 20 Oct 2022 20:01:18 +0000 Source: python-pybedtools Binary: python3-pybedtools Built-For-Profiles: noudeb Architecture: arm64 Version: 0.9.0-1build2 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work Changes: python-pybedtools (0.9.0-1build2) kinetic; urgency=medium . * No-change rebuild with Python 3.11 as supported version Checksums-Sha1: 38c4d66e2b29c7b7182bd96b2d9a091ba518b3a1 12757 python-pybedtools_0.9.0-1build2_arm64.buildinfo 9691f8a7089d337d6625cb6fb61cbf4aee0908df 12291732 python3-pybedtools_0.9.0-1build2_arm64.deb Checksums-Sha256: 113c3d665c14db1607f07b8d9dd4303a69f184d41911d956ff77366a2a6b6463 12757 python-pybedtools_0.9.0-1build2_arm64.buildinfo 70007a5c27552d5a640345bc4cf3751fe76b802ba9f86789dacd71fa84791b5d 12291732 python3-pybedtools_0.9.0-1build2_arm64.deb Files: 2d40046ea2f12113508afb4d7e7d5b41 12757 python optional python-pybedtools_0.9.0-1build2_arm64.buildinfo 636ba710f747f9fb3a0a62203aadf6cb 12291732 python optional python3-pybedtools_0.9.0-1build2_arm64.deb /<>/python-pybedtools_0.9.0-1build2_arm64.changes.new could not be renamed to /<>/python-pybedtools_0.9.0-1build2_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-pybedtools Binary: python3-pybedtools Architecture: arm64 Version: 0.9.0-1build2 Checksums-Md5: 636ba710f747f9fb3a0a62203aadf6cb 12291732 python3-pybedtools_0.9.0-1build2_arm64.deb Checksums-Sha1: 9691f8a7089d337d6625cb6fb61cbf4aee0908df 12291732 python3-pybedtools_0.9.0-1build2_arm64.deb Checksums-Sha256: 70007a5c27552d5a640345bc4cf3751fe76b802ba9f86789dacd71fa84791b5d 12291732 python3-pybedtools_0.9.0-1build2_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Thu, 20 Oct 2022 20:30:29 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu3), base-passwd (= 3.6.0), bash (= 5.2-1ubuntu2), bedtools (= 2.30.0+dfsg-2ubuntu1), binutils (= 2.39-3ubuntu1), binutils-aarch64-linux-gnu (= 2.39-3ubuntu1), binutils-common (= 2.39-3ubuntu1), blt (= 2.5.3+dfsg-4.1build2), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-3ubuntu1), cython3 (= 0.29.30-1ubuntu2), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.9.1ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20221001build1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), docutils-common (= 0.17.1+dfsg-2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), fonts-lyx (= 2.3.6.1-1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-3ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-3ubuntu1), gcc-12-base (= 12.2.0-3ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1ubuntu3), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-3ubuntu1), libatomic1 (= 12.2.0-3ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39-3ubuntu1), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-17ubuntu2~ppa2), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-3ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2ubuntu1), libctf-nobfd0 (= 2.39-3ubuntu1), libctf0 (= 2.39-3ubuntu1), libcurl3-gnutls (= 7.85.0-1), libcurl4 (= 7.85.0-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.9.1ubuntu1), libdeflate0 (= 1.12-1), libdevmapper1.02.1 (= 2:1.02.185-1ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-4), libelf1 (= 0.187-4), libexpat1 (= 2.4.8-2), libexpat1-dev (= 2.4.8-2), libfdisk1 (= 2.38-4ubuntu1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-3ubuntu1), libgcc-s1 (= 12.2.0-3ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.2.0-3ubuntu1), libglib2.0-0 (= 2.74.0-3), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-3ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.39-3ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20-1), libharfbuzz0b (= 2.7.4-1ubuntu5), libhogweed6 (= 3.8.1-2), libhts3 (= 1.13+ds-2build2), libhtscodecs2 (= 1.2.2-1), libhwasan0 (= 12.2.0-3ubuntu1), libice6 (= 2:1.0.10-1build2), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libimagequant0 (= 2.17.0-1), libip4tc2 (= 1.8.7-1ubuntu6), libisl23 (= 0.25-1), libitm1 (= 12.2.0-3ubuntu1), libjbig0 (= 2.1-3.1build3), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 4.5.0-4), libjs-underscore (= 1.13.3~dfsg+~1.11.4-1), libjson-c5 (= 0.16-1), libjson-perl (= 4.09000-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblapack3 (= 3.10.1-2), liblbfgsb0 (= 3.0+dfsg.3-11), liblcms2-2 (= 2.13.1-1), libldap-2.5-0 (= 2.5.13+dfsg-1ubuntu1), liblerc3 (= 3.0+ds-1ubuntu1), liblsan0 (= 12.2.0-3ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libopenblas-dev (= 0.3.20+ds-2), libopenblas-pthread-dev (= 0.3.20+ds-2), libopenblas0 (= 0.3.20+ds-2), libopenblas0-pthread (= 0.3.20+ds-2), libopenjp2-7 (= 2.5.0-1), libp11-kit0 (= 0.24.1-1ubuntu2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpango-1.0-0 (= 1.50.10+ds-1), libpangocairo-1.0-0 (= 1.50.10+ds-1), libpangoft2-1.0-0 (= 1.50.10+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-2), libpixman-1-0 (= 0.40.0-1build4), libpng16-16 (= 1.6.38-2), libpsl5 (= 0.21.0-1.2build2), libpython3-all-dev (= 3.10.6-1ubuntu1~ppa1), libpython3-dev (= 3.10.6-1ubuntu1~ppa1), libpython3-stdlib (= 3.10.6-1ubuntu1~ppa1), libpython3.10 (= 3.10.7-1), libpython3.10-dev (= 3.10.7-1), libpython3.10-minimal (= 3.10.7-1), libpython3.10-stdlib (= 3.10.7-1), libpython3.11 (= 3.11.0~rc2-1ubuntu1~ppa1), libpython3.11-dev (= 3.11.0~rc2-1ubuntu1~ppa1), libpython3.11-minimal (= 3.11.0~rc2-1ubuntu1~ppa1), libpython3.11-stdlib (= 3.11.0~rc2-1ubuntu1~ppa1), libqhull-r8.0 (= 2020.2-5), libraqm0 (= 0.7.0-4ubuntu1), libreadline8 (= 8.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsemanage-common (= 3.4-1build1), libsemanage2 (= 3.4-1build1), libsepol2 (= 3.4-2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.39.3-1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-3ubuntu1), libstdc++6 (= 12.2.0-3ubuntu1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-1ubuntu7), libsystemd0 (= 251.4-1ubuntu7), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0-4ubuntu3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-3ubuntu1), libubsan1 (= 12.2.0-3ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu7), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libwebp7 (= 1.2.2-2), libwebpdemux2 (= 1.2.2-2), libwebpmux3 (= 1.2.2-2), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1build1), libxrender1 (= 1:0.9.10-1.1), libxsimd-dev (= 8.1.0-7), libxslt1.1 (= 1.1.35-1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libyaml-0-2 (= 0.2.5-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-21.21), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mount (= 2.38-4ubuntu1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openssl (= 3.0.5-2ubuntu1), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), python-babel-localedata (= 2.8.0+dfsg.1-7), python-matplotlib-data (= 3.5.2-2build2~ppa1), python3 (= 3.10.6-1ubuntu1~ppa1), python3-alabaster (= 0.7.12-1), python3-all (= 3.10.6-1ubuntu1~ppa1), python3-all-dev (= 3.10.6-1ubuntu1~ppa1), python3-appdirs (= 1.4.4-2), python3-attr (= 22.1.0-1), python3-babel (= 2.8.0+dfsg.1-7), python3-beniget (= 0.4.1-2), python3-brotli (= 1.0.9-2build7), python3-certifi (= 2022.6.15-2), python3-chardet (= 4.0.0-2), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.6-1ubuntu1~ppa1), python3-distutils (= 3.10.7-1), python3-docutils (= 0.17.1+dfsg-2), python3-fonttools (= 4.34.4-1build1), python3-fs (= 2.4.16-1), python3-gast (= 0.5.2-2), python3-idna (= 3.3-1), python3-imagesize (= 1.4.1-1), python3-importlib-metadata (= 4.6.4-1), python3-iniconfig (= 1.1.1-2), python3-jinja2 (= 3.0.3-1), python3-kiwisolver (= 1.3.2-1build2), python3-lib2to3 (= 3.10.7-1), python3-lxml (= 4.9.1-1build1), python3-lz4 (= 4.0.0+dfsg-1build1), python3-markupsafe (= 2.0.1-2build2), python3-matplotlib (= 3.5.2-2build2~ppa1), python3-minimal (= 3.10.6-1ubuntu1~ppa1), python3-more-itertools (= 8.10.0-2), python3-mpmath (= 1.2.1-2), python3-nose (= 1.3.7-8), python3-numpy (= 1:1.21.5-1ubuntu1~ppa1), python3-numpydoc (= 1.3.1-1), python3-packaging (= 21.3-1.1), python3-pandas (= 1.3.5+dfsg-5ubuntu1~ppa1), python3-pandas-lib (= 1.3.5+dfsg-5ubuntu1~ppa1), python3-pil (= 9.2.0-1build1), python3-pil.imagetk (= 9.2.0-1build1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 1.0.0+repack-1), python3-ply (= 3.11-5), python3-psutil (= 5.9.0-1build2), python3-py (= 1.11.0-0ubuntu1~ppa1), python3-pygments (= 2.12.0+dfsg-2), python3-pyparsing (= 3.0.7-2), python3-pysam (= 0.17.0+ds-2build1), python3-pytest (= 7.1.2-2ubuntu1), python3-pythran (= 0.11.0+ds-7build1), python3-requests (= 2.27.1+dfsg-1ubuntu2), python3-roman (= 3.3-1), python3-scipy (= 1.8.1-10build1), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-4), python3-snowballstemmer (= 2.2.0-1build1), python3-sphinx (= 4.5.0-4), python3-sympy (= 1.10.1-3), python3-tk (= 3.10.7-1), python3-tomli (= 2.0.1-1), python3-tz (= 2022.2.1-1), python3-ufolib2 (= 0.13.1+dfsg1-1), python3-unicodedata2 (= 14.0.0+ds2-1ubuntu1), python3-urllib3 (= 1.26.9-1), python3-yaml (= 5.4.1-1ubuntu2), python3-zipp (= 1.0.0-4), python3.10 (= 3.10.7-1), python3.10-dev (= 3.10.7-1), python3.10-minimal (= 3.10.7-1), python3.11 (= 3.11.0~rc2-1ubuntu1~ppa1), python3.11-dev (= 3.11.0~rc2-1ubuntu1~ppa1), python3.11-minimal (= 3.11.0~rc2-1ubuntu1~ppa1), r-base-core (= 4.2.1-3), readline-common (= 8.2-1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sphinx-common (= 4.5.0-4), systemd (= 251.4-1ubuntu7), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build2), tzdata (= 2022e-0ubuntu2), ucf (= 3.0043), unicode-data (= 15.0.0-1), unzip (= 6.0-27ubuntu1), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu3), xml-core (= 0.18+nmu1), xz-utils (= 5.2.5-2.1), zip (= 3.0-12build2), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-4.1ubuntu1) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1666296078" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-pybedtools_0.9.0-1build2_arm64.deb ------------------------------------------ new Debian package, version 2.0. size 12291732 bytes: control archive=4470 bytes. 794 bytes, 17 lines control 12729 bytes, 130 lines md5sums 283 bytes, 12 lines * postinst #!/bin/sh 396 bytes, 12 lines * prerm #!/bin/sh Package: python3-pybedtools Source: python-pybedtools Version: 0.9.0-1build2 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 17505 Depends: python3 (<< 3.12), python3 (>= 3.10~), python3-pysam, python3-six, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4) Suggests: python-pybedtools-doc Section: python Priority: optional Homepage: https://daler.github.io/pybedtools/ Description: Python 3 wrapper around BEDTools for bioinformatics work The BEDTools suite of programs is widely used for genomic interval manipulation or “genome algebra”. pybedtools wraps and extends BEDTools and offers feature-level manipulations from within Python. . 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./usr/lib/python3/dist-packages/pybedtools/version.py drwxr-xr-x root/root 0 2022-10-20 20:01 ./usr/share/ drwxr-xr-x root/root 0 2022-10-20 20:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-20 20:01 ./usr/share/doc/python3-pybedtools/ -rw-r--r-- root/root 1608 2022-10-20 20:01 ./usr/share/doc/python3-pybedtools/changelog.Debian.gz -rw-r--r-- root/root 3395 2022-02-17 14:21 ./usr/share/doc/python3-pybedtools/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 130464 Build-Time: 236 Distribution: kinetic Host Architecture: arm64 Install-Time: 208 Job: python-pybedtools_0.9.0-1build2.dsc Machine Architecture: arm64 Package: python-pybedtools Package-Time: 446 Source-Version: 0.9.0-1build2 Space: 130464 Status: successful Version: 0.9.0-1build2 -------------------------------------------------------------------------------- Finished at 2022-10-20T20:30:30Z Build needed 00:07:26, 130464k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24561569 Scanning for processes to kill in build PACKAGEBUILD-24561569