RUN: /bin/echo ['echo', 'Forking build subprocess...']
Forking build subprocess...
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '106c6649541ec515c09e93d54e99d7ea57d9365b', '/home/buildd/filecache-default/25121a7572f17d65ba7d4c7db29be92bd6e19436']
Uncompressing the tarball...
Synching the system clock with the buildd NTP service...
21 Apr 16:03:21 ntpdate[3403]: step time server 10.211.37.1 offset -616363.820947 sec
Unpacking chroot for build 106c6649541ec515c09e93d54e99d7ea57d9365b
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '106c6649541ec515c09e93d54e99d7ea57d9365b']
Mounting chroot for build 106c6649541ec515c09e93d54e99d7ea57d9365b
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '106c6649541ec515c09e93d54e99d7ea57d9365b', 'deb http://ftpmaster.internal/ubuntu natty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu natty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu natty-updates main restricted universe multiverse']
Overriding sources.list in build-106c6649541ec515c09e93d54e99d7ea57d9365b
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '106c6649541ec515c09e93d54e99d7ea57d9365b', 'i386']
Updating debian chroot for build 106c6649541ec515c09e93d54e99d7ea57d9365b
Get:1 http://ftpmaster.internal natty Release.gpg [198 B]
Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty/multiverse Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty/restricted Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en
Get:2 http://ftpmaster.internal natty-security Release.gpg [198 B]
Ign http://ftpmaster.internal/ubuntu/ natty-security/main Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-security/multiverse Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-security/restricted Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-security/universe Translation-en
Get:3 http://ftpmaster.internal natty-updates Release.gpg [198 B]
Ign http://ftpmaster.internal/ubuntu/ natty-updates/main Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-updates/multiverse Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-updates/restricted Translation-en
Ign http://ftpmaster.internal/ubuntu/ natty-updates/universe Translation-en
Get:4 http://ftpmaster.internal natty Release [39.8 kB]
Get:5 http://ftpmaster.internal natty-security Release [23.2 kB]
Get:6 http://ftpmaster.internal natty-updates Release [23.2 kB]
Get:7 http://ftpmaster.internal natty/main i386 Packages [1555 kB]
Get:8 http://ftpmaster.internal natty/restricted i386 Packages [9015 B]
Get:9 http://ftpmaster.internal natty/universe i386 Packages [6023 kB]
Get:10 http://ftpmaster.internal natty/multiverse i386 Packages [183 kB]
Get:11 http://ftpmaster.internal natty-security/main i386 Packages [14 B]
Get:12 http://ftpmaster.internal natty-security/restricted i386 Packages [14 B]
Get:13 http://ftpmaster.internal natty-security/universe i386 Packages [14 B]
Get:14 http://ftpmaster.internal natty-security/multiverse i386 Packages [14 B]
Get:15 http://ftpmaster.internal natty-updates/main i386 Packages [14 B]
Get:16 http://ftpmaster.internal natty-updates/restricted i386 Packages [14 B]
Get:17 http://ftpmaster.internal natty-updates/universe i386 Packages [14 B]
Get:18 http://ftpmaster.internal natty-updates/multiverse i386 Packages [14 B]
Fetched 7857 kB in 3s (2161 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  libpam-modules-bin multiarch-support
The following packages will be upgraded:
  adduser apt apt-transport-https base-files bash binutils bsdutils
  busybox-initramfs bzip2 coreutils cpio cpp cpp-4.5 debconf debconf-i18n dpkg
  dpkg-dev e2fslibs e2fsprogs findutils g++ g++-4.5 gcc gcc-4.5 gcc-4.5-base
  gnupg gpgv initramfs-tools initramfs-tools-bin initscripts klibc-utils
  libacl1 libattr1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev
  libcomerr2 libdb4.8 libdbus-1-3 libdpkg-perl libdrm-intel1 libdrm-nouveau1a
  libdrm-radeon1 libdrm2 libgcc1 libgcrypt11 libgdbm3 libglib2.0-0 libgmp3c2
  libgmpxx4ldbl libgnutls26 libgomp1 libgpg-error0 libgssapi-krb5-2
  libk5crypto3 libkeyutils1 libklibc libkrb5-3 libkrb5support0 libldap-2.4-2
  libmpc2 libmpfr4 libnih-dbus1 libnih1 libpam-modules libpam-runtime libpam0g
  libpcre3 libplymouth2 libpng12-0 libreadline6 libselinux1 libss2 libssl0.9.8
  libstdc++6 libstdc++6-4.5-dev libtasn1-3 libudev0 libusb-0.1-4 libuuid1
  linux-libc-dev locales login lsb-base make module-init-tools mount mountall
  netbase openssl passwd perl perl-base perl-modules pkg-create-dbgsym
  pkgbinarymangler plymouth procps python2.7-minimal readline-common sysv-rc
  sysvinit-utils tzdata udev upstart util-linux zlib1g
110 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
Need to get 64.6 MB of archives.
After this operation, 508 kB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  libnih-dbus1 libnih1 libc6-dev libc-dev-bin libc-bin libc6 multiarch-support
  libdbus-1-3 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 cpp-4.5
  libstdc++6-4.5-dev g++-4.5 gcc-4.5 libstdc++6 libgmp3c2 libgmpxx4ldbl
  libmpfr4 libmpc2 zlib1g binutils debconf-i18n debconf tzdata libpam0g
  libselinux1 libpam-modules-bin libpam-modules base-files bash coreutils dpkg
  e2fslibs e2fsprogs findutils login mount perl-modules bzip2 libbz2-1.0
  libdb4.8 libgdbm3 perl perl-base lsb-base sysvinit-utils sysv-rc passwd
  initscripts libudev0 libattr1 libacl1 libpcre3 libglib2.0-0 libusb-0.1-4
  module-init-tools initramfs-tools initramfs-tools-bin klibc-utils libklibc
  busybox-initramfs cpio procps adduser util-linux udev libdrm2 libdrm-intel1
  libdrm-nouveau1a libdrm-radeon1 plymouth libpng12-0 libplymouth2 mountall
  upstart bsdutils libuuid1 libblkid1 libcomerr2 libss2 libgpg-error0
  libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1 libk5crypto3
  libgssapi-krb5-2 libkrb5-3 libkrb5support0 apt libpam-runtime libssl0.9.8
  python2.7-minimal readline-common libreadline6 gpgv gnupg netbase locales
  apt-transport-https libldap-2.4-2 openssl cpp dpkg-dev libdpkg-perl make gcc
  g++ pkg-create-dbgsym pkgbinarymangler
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ natty/main libnih-dbus1 i386 1.0.3-1ubuntu1 [13.1 kB]
Get:2 http://ftpmaster.internal/ubuntu/ natty/main libnih1 i386 1.0.3-1ubuntu1 [45.8 kB]
Get:3 http://ftpmaster.internal/ubuntu/ natty/main libc6-dev i386 2.13-0ubuntu13 [4836 kB]
Get:4 http://ftpmaster.internal/ubuntu/ natty/main libc-dev-bin i386 2.13-0ubuntu13 [75.5 kB]
Get:5 http://ftpmaster.internal/ubuntu/ natty/main libc-bin i386 2.13-0ubuntu13 [906 kB]
Get:6 http://ftpmaster.internal/ubuntu/ natty/main libc6 i386 2.13-0ubuntu13 [3765 kB]
Get:7 http://ftpmaster.internal/ubuntu/ natty/main multiarch-support i386 2.13-0ubuntu13 [8132 B]
Get:8 http://ftpmaster.internal/ubuntu/ natty/main libdbus-1-3 i386 1.4.6-1ubuntu6 [122 kB]
Get:9 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev i386 2.6.38-8.42 [773 kB]
Get:10 http://ftpmaster.internal/ubuntu/ natty/main libgomp1 i386 4.5.2-8ubuntu3 [24.1 kB]
Get:11 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5-base i386 4.5.2-8ubuntu3 [13.9 kB]
Get:12 http://ftpmaster.internal/ubuntu/ natty/main libgcc1 i386 1:4.5.2-8ubuntu3 [51.5 kB]
Get:13 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.5 i386 4.5.2-8ubuntu3 [4154 kB]
Get:14 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.5-dev i386 4.5.2-8ubuntu3 [1527 kB]
Get:15 http://ftpmaster.internal/ubuntu/ natty/main g++-4.5 i386 4.5.2-8ubuntu3 [5510 kB]
Get:16 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5 i386 4.5.2-8ubuntu3 [6882 kB]
Get:17 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6 i386 4.5.2-8ubuntu3 [333 kB]
Get:18 http://ftpmaster.internal/ubuntu/ natty/main libgmp3c2 i386 2:4.3.2+dfsg-1ubuntu3 [319 kB]
Get:19 http://ftpmaster.internal/ubuntu/ natty/main libgmpxx4ldbl i386 2:4.3.2+dfsg-1ubuntu3 [10.3 kB]
Get:20 http://ftpmaster.internal/ubuntu/ natty/main libmpfr4 i386 3.0.0-7 [177 kB]
Get:21 http://ftpmaster.internal/ubuntu/ natty/main libmpc2 i386 0.9-1 [37.4 kB]
Get:22 http://ftpmaster.internal/ubuntu/ natty/main zlib1g i386 1:1.2.3.4.dfsg-3ubuntu3 [49.3 kB]
Get:23 http://ftpmaster.internal/ubuntu/ natty/main binutils i386 2.21.0.20110327-2ubuntu2 [2170 kB]
Get:24 http://ftpmaster.internal/ubuntu/ natty/main debconf-i18n all 1.5.36ubuntu4 [208 kB]
Get:25 http://ftpmaster.internal/ubuntu/ natty/main debconf all 1.5.36ubuntu4 [140 kB]
Get:26 http://ftpmaster.internal/ubuntu/ natty/main tzdata all 2011e-1 [772 kB]
Get:27 http://ftpmaster.internal/ubuntu/ natty/main libpam0g i386 1.1.2-2ubuntu7 [51.4 kB]
Get:28 http://ftpmaster.internal/ubuntu/ natty/main libselinux1 i386 2.0.96-1ubuntu2 [58.5 kB]
Get:29 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules-bin i386 1.1.2-2ubuntu7 [35.0 kB]
Get:30 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules i386 1.1.2-2ubuntu7 [263 kB]
Get:31 http://ftpmaster.internal/ubuntu/ natty/main base-files i386 5.0.0ubuntu27 [54.3 kB]
Get:32 http://ftpmaster.internal/ubuntu/ natty/main bash i386 4.2-0ubuntu3 [544 kB]
Get:33 http://ftpmaster.internal/ubuntu/ natty/main coreutils i386 8.5-1ubuntu6 [1836 kB]
Get:34 http://ftpmaster.internal/ubuntu/ natty/main dpkg i386 1.16.0~ubuntu6 [1848 kB]
Get:35 http://ftpmaster.internal/ubuntu/ natty/main e2fslibs i386 1.41.14-1ubuntu3 [143 kB]
Get:36 http://ftpmaster.internal/ubuntu/ natty/main e2fsprogs i386 1.41.14-1ubuntu3 [813 kB]
Get:37 http://ftpmaster.internal/ubuntu/ natty/main findutils i386 4.4.2-1ubuntu3 [302 kB]
Get:38 http://ftpmaster.internal/ubuntu/ natty/main login i386 1:4.1.4.2+svn3283-3ubuntu1 [279 kB]
Get:39 http://ftpmaster.internal/ubuntu/ natty/main mount i386 2.17.2-9.1ubuntu4 [124 kB]
Get:40 http://ftpmaster.internal/ubuntu/ natty/main perl-modules all 5.10.1-17ubuntu4 [3442 kB]
Get:41 http://ftpmaster.internal/ubuntu/ natty/main bzip2 i386 1.0.5-6ubuntu1 [35.7 kB]
Get:42 http://ftpmaster.internal/ubuntu/ natty/main libbz2-1.0 i386 1.0.5-6ubuntu1 [32.7 kB]
Get:43 http://ftpmaster.internal/ubuntu/ natty/main libdb4.8 i386 4.8.30-5ubuntu2 [657 kB]
Get:44 http://ftpmaster.internal/ubuntu/ natty/main libgdbm3 i386 1.8.3-9ubuntu1 [33.8 kB]
Get:45 http://ftpmaster.internal/ubuntu/ natty/main perl i386 5.10.1-17ubuntu4 [3749 kB]
Get:46 http://ftpmaster.internal/ubuntu/ natty/main perl-base i386 5.10.1-17ubuntu4 [928 kB]
Get:47 http://ftpmaster.internal/ubuntu/ natty/main lsb-base all 4.0-0ubuntu10 [10.8 kB]
Get:48 http://ftpmaster.internal/ubuntu/ natty/main sysvinit-utils i386 2.87dsf-4ubuntu23 [50.7 kB]
Get:49 http://ftpmaster.internal/ubuntu/ natty/main sysv-rc all 2.87dsf-4ubuntu23 [36.4 kB]
Get:50 http://ftpmaster.internal/ubuntu/ natty/main passwd i386 1:4.1.4.2+svn3283-3ubuntu1 [871 kB]
Get:51 http://ftpmaster.internal/ubuntu/ natty/main initscripts i386 2.87dsf-4ubuntu23 [32.1 kB]
Get:52 http://ftpmaster.internal/ubuntu/ natty/main libudev0 i386 167-0ubuntu3 [26.6 kB]
Get:53 http://ftpmaster.internal/ubuntu/ natty/main libattr1 i386 1:2.4.44-2ubuntu2 [10.1 kB]
Get:54 http://ftpmaster.internal/ubuntu/ natty/main libacl1 i386 2.2.49-4ubuntu2 [16.3 kB]
Get:55 http://ftpmaster.internal/ubuntu/ natty/main libpcre3 i386 8.12-3ubuntu2 [148 kB]
Get:56 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-0 i386 2.28.5-0ubuntu1 [971 kB]
Get:57 http://ftpmaster.internal/ubuntu/ natty/main libusb-0.1-4 i386 2:0.1.12-17 [15.1 kB]
Get:58 http://ftpmaster.internal/ubuntu/ natty/main module-init-tools i386 3.12-1ubuntu6 [80.3 kB]
Get:59 http://ftpmaster.internal/ubuntu/ natty/main initramfs-tools all 0.98.8ubuntu3 [52.6 kB]
Get:60 http://ftpmaster.internal/ubuntu/ natty/main initramfs-tools-bin i386 0.98.8ubuntu3 [10.9 kB]
Get:61 http://ftpmaster.internal/ubuntu/ natty/main klibc-utils i386 1.5.20-1ubuntu5 [142 kB]
Get:62 http://ftpmaster.internal/ubuntu/ natty/main libklibc i386 1.5.20-1ubuntu5 [41.6 kB]
Get:63 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs i386 1:1.17.1-10ubuntu1 [148 kB]
Get:64 http://ftpmaster.internal/ubuntu/ natty/main cpio i386 2.11-7ubuntu1 [104 kB]
Get:65 http://ftpmaster.internal/ubuntu/ natty/main procps i386 1:3.2.8-10ubuntu3 [212 kB]
Get:66 http://ftpmaster.internal/ubuntu/ natty/main adduser all 3.112+nmu1ubuntu5 [99.3 kB]
Get:67 http://ftpmaster.internal/ubuntu/ natty/main util-linux i386 2.17.2-9.1ubuntu4 [481 kB]
Get:68 http://ftpmaster.internal/ubuntu/ natty/main udev i386 167-0ubuntu3 [365 kB]
Get:69 http://ftpmaster.internal/ubuntu/ natty/main libdrm2 i386 2.4.23-1ubuntu6 [22.6 kB]
Get:70 http://ftpmaster.internal/ubuntu/ natty/main libdrm-intel1 i386 2.4.23-1ubuntu6 [23.8 kB]
Get:71 http://ftpmaster.internal/ubuntu/ natty/main libdrm-nouveau1a i386 2.4.23-1ubuntu6 [14.0 kB]
Get:72 http://ftpmaster.internal/ubuntu/ natty/main libdrm-radeon1 i386 2.4.23-1ubuntu6 [14.5 kB]
Get:73 http://ftpmaster.internal/ubuntu/ natty/main plymouth i386 0.8.2-2ubuntu21 [112 kB]
Get:74 http://ftpmaster.internal/ubuntu/ natty/main libpng12-0 i386 1.2.44-1ubuntu3 [126 kB]
Get:75 http://ftpmaster.internal/ubuntu/ natty/main libplymouth2 i386 0.8.2-2ubuntu21 [79.7 kB]
Get:76 http://ftpmaster.internal/ubuntu/ natty/main mountall i386 2.25 [44.8 kB]
Get:77 http://ftpmaster.internal/ubuntu/ natty/main upstart i386 0.9.4-1ubuntu1 [254 kB]
Get:78 http://ftpmaster.internal/ubuntu/ natty/main bsdutils i386 1:2.17.2-9.1ubuntu4 [31.8 kB]
Get:79 http://ftpmaster.internal/ubuntu/ natty/main libuuid1 i386 2.17.2-9.1ubuntu4 [13.1 kB]
Get:80 http://ftpmaster.internal/ubuntu/ natty/main libblkid1 i386 2.17.2-9.1ubuntu4 [60.4 kB]
Get:81 http://ftpmaster.internal/ubuntu/ natty/main libcomerr2 i386 1.41.14-1ubuntu3 [52.9 kB]
Get:82 http://ftpmaster.internal/ubuntu/ natty/main libss2 i386 1.41.14-1ubuntu3 [57.4 kB]
Get:83 http://ftpmaster.internal/ubuntu/ natty/main libgpg-error0 i386 1.10-0.2ubuntu1 [14.2 kB]
Get:84 http://ftpmaster.internal/ubuntu/ natty/main libgcrypt11 i386 1.4.6-4ubuntu2 [250 kB]
Get:85 http://ftpmaster.internal/ubuntu/ natty/main libtasn1-3 i386 2.7-1ubuntu1 [41.9 kB]
Get:86 http://ftpmaster.internal/ubuntu/ natty/main libgnutls26 i386 2.8.6-1ubuntu2 [365 kB]
Get:87 http://ftpmaster.internal/ubuntu/ natty/main libkeyutils1 i386 1.4-4ubuntu2 [6424 B]
Get:88 http://ftpmaster.internal/ubuntu/ natty/main libk5crypto3 i386 1.8.3+dfsg-5ubuntu2 [76.8 kB]
Get:89 http://ftpmaster.internal/ubuntu/ natty/main libgssapi-krb5-2 i386 1.8.3+dfsg-5ubuntu2 [100 kB]
Get:90 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-3 i386 1.8.3+dfsg-5ubuntu2 [327 kB]
Get:91 http://ftpmaster.internal/ubuntu/ natty/main libkrb5support0 i386 1.8.3+dfsg-5ubuntu2 [22.2 kB]
Get:92 http://ftpmaster.internal/ubuntu/ natty/main apt i386 0.8.13.2ubuntu2 [2100 kB]
Get:93 http://ftpmaster.internal/ubuntu/ natty/main libpam-runtime all 1.1.2-2ubuntu7 [42.7 kB]
Get:94 http://ftpmaster.internal/ubuntu/ natty/main libssl0.9.8 i386 0.9.8o-5ubuntu1 [757 kB]
Get:95 http://ftpmaster.internal/ubuntu/ natty/main python2.7-minimal i386 2.7.1-5ubuntu2 [1510 kB]
Get:96 http://ftpmaster.internal/ubuntu/ natty/main readline-common all 6.2-0ubuntu1 [49.8 kB]
Get:97 http://ftpmaster.internal/ubuntu/ natty/main libreadline6 i386 6.2-0ubuntu1 [120 kB]
Get:98 http://ftpmaster.internal/ubuntu/ natty/main gpgv i386 1.4.11-3ubuntu1 [163 kB]
Get:99 http://ftpmaster.internal/ubuntu/ natty/main gnupg i386 1.4.11-3ubuntu1 [748 kB]
Get:100 http://ftpmaster.internal/ubuntu/ natty/main netbase all 4.45ubuntu1 [14.8 kB]
Get:101 http://ftpmaster.internal/ubuntu/ natty/main locales all 2.13+git20100825-4 [3496 kB]
Get:102 http://ftpmaster.internal/ubuntu/ natty/main apt-transport-https i386 0.8.13.2ubuntu2 [19.0 kB]
Get:103 http://ftpmaster.internal/ubuntu/ natty/main libldap-2.4-2 i386 2.4.23-6ubuntu6 [160 kB]
Get:104 http://ftpmaster.internal/ubuntu/ natty/main openssl i386 0.9.8o-5ubuntu1 [397 kB]
Get:105 http://ftpmaster.internal/ubuntu/ natty/main cpp i386 4:4.5.2-1ubuntu3 [28.0 kB]
Get:106 http://ftpmaster.internal/ubuntu/ natty/main dpkg-dev all 1.16.0~ubuntu6 [476 kB]
Get:107 http://ftpmaster.internal/ubuntu/ natty/main libdpkg-perl all 1.16.0~ubuntu6 [183 kB]
Get:108 http://ftpmaster.internal/ubuntu/ natty/main make i386 3.81-8ubuntu1 [109 kB]
Get:109 http://ftpmaster.internal/ubuntu/ natty/main gcc i386 4:4.5.2-1ubuntu3 [5068 B]
Get:110 http://ftpmaster.internal/ubuntu/ natty/main g++ i386 4:4.5.2-1ubuntu3 [1446 B]
Get:111 http://ftpmaster.internal/ubuntu/ natty/main pkg-create-dbgsym all 0.48 [8096 B]
Get:112 http://ftpmaster.internal/ubuntu/ natty/main pkgbinarymangler all 95 [23.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 64.6 MB in 1s (32.4 MB/s)
(Reading database ... 13677 files and directories currently installed.)
Preparing to replace libnih-dbus1 1.0.3-1 (using .../libnih-dbus1_1.0.3-1ubuntu1_i386.deb) ...
Unpacking replacement libnih-dbus1 ...
Preparing to replace libnih1 1.0.3-1 (using .../libnih1_1.0.3-1ubuntu1_i386.deb) ...
Unpacking replacement libnih1 ...
Preparing to replace libc6-dev 2.12.1-0ubuntu14 (using .../libc6-dev_2.13-0ubuntu13_i386.deb) ...
Unpacking replacement libc6-dev ...
Preparing to replace libc-dev-bin 2.12.1-0ubuntu14 (using .../libc-dev-bin_2.13-0ubuntu13_i386.deb) ...
Unpacking replacement libc-dev-bin ...
Preparing to replace libc-bin 2.12.1-0ubuntu14 (using .../libc-bin_2.13-0ubuntu13_i386.deb) ...
Unpacking replacement libc-bin ...
Setting up libc-bin (2.13-0ubuntu13) ...
(Reading database ... 13700 files and directories currently installed.)
Preparing to replace libc6 2.12.1-0ubuntu14 (using .../libc6_2.13-0ubuntu13_i386.deb) ...
Checking for services that may need to be restarted...
Checking init scripts...
Unpacking replacement libc6 ...
Setting up libc6 (2.13-0ubuntu13) ...
Installing new version of config file /etc/ld.so.conf.d/i686-linux-gnu.conf ...
Checking for services that may need to be restarted...
Checking init scripts...
Nothing to restart.
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Selecting previously deselected package multiarch-support.
(Reading database ... 13701 files and directories currently installed.)
Unpacking multiarch-support (from .../multiarch-support_2.13-0ubuntu13_i386.deb) ...
Setting up multiarch-support (2.13-0ubuntu13) ...
(Reading database ... 13704 files and directories currently installed.)
Preparing to replace libdbus-1-3 1.4.1-0ubuntu2 (using .../libdbus-1-3_1.4.6-1ubuntu6_i386.deb) ...
Unpacking replacement libdbus-1-3 ...
Preparing to replace linux-libc-dev 2.6.38-1.28 (using .../linux-libc-dev_2.6.38-8.42_i386.deb) ...
Unpacking replacement linux-libc-dev ...
Preparing to replace libgomp1 4.5.2-2ubuntu1 (using .../libgomp1_4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement libgomp1 ...
Preparing to replace gcc-4.5-base 4.5.2-2ubuntu1 (using .../gcc-4.5-base_4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement gcc-4.5-base ...
Setting up gcc-4.5-base (4.5.2-8ubuntu3) ...
(Reading database ... 13713 files and directories currently installed.)
Preparing to replace libgcc1 1:4.5.2-2ubuntu1 (using .../libgcc1_1%3a4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement libgcc1 ...
Setting up libgcc1 (1:4.5.2-8ubuntu3) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 13713 files and directories currently installed.)
Preparing to replace cpp-4.5 4.5.2-2ubuntu1 (using .../cpp-4.5_4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement cpp-4.5 ...
Preparing to replace libstdc++6-4.5-dev 4.5.2-2ubuntu1 (using .../libstdc++6-4.5-dev_4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement libstdc++6-4.5-dev ...
Preparing to replace g++-4.5 4.5.2-2ubuntu1 (using .../g++-4.5_4.5.2-8ubuntu3_i386.deb) ...
Unpacking replacement g++-4.5 ...
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Current default time zone: 'Etc/UTC'
Local time is now:      Thu Apr 14 12:53:25 UTC 2011.
Universal Time is now:  Thu Apr 14 12:53:25 UTC 2011.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key <ftpmaster@ubuntu.com>" not changed
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Setting up libkrb5-3 (1.8.3+dfsg-5ubuntu2) ...
Setting up libgssapi-krb5-2 (1.8.3+dfsg-5ubuntu2) ...
Setting up readline-common (6.2-0ubuntu1) ...
Setting up libreadline6 (6.2-0ubuntu1) ...
Setting up gpgv (1.4.11-3ubuntu1) ...
Setting up gnupg (1.4.11-3ubuntu1) ...
Setting up locales (2.13+git20100825-4) ...
Setting up apt-transport-https (0.8.13.2ubuntu2) ...
Setting up libldap-2.4-2 (2.4.23-6ubuntu6) ...
Setting up openssl (0.9.8o-5ubuntu1) ...
Setting up cpp (4:4.5.2-1ubuntu3) ...
Setting up make (3.81-8ubuntu1) ...
Setting up gcc (4:4.5.2-1ubuntu3) ...
Setting up pkg-create-dbgsym (0.48) ...
Setting up pkgbinarymangler (95) ...
Setting up libstdc++6-4.5-dev (4.5.2-8ubuntu3) ...
Setting up perl-modules (5.10.1-17ubuntu4) ...
Setting up mountall (2.25) ...
Installing new version of config file /etc/init/mounted-tmp.conf ...
Setting up upstart (0.9.4-1ubuntu1) ...
Installing new version of config file /etc/init/rc-sysinit.conf ...
Installing new version of config file /etc/init/upstart-udev-bridge.conf ...
Setting up initscripts (2.87dsf-4ubuntu23) ...
Installing new version of config file /etc/init.d/sendsigs ...
Installing new version of config file /etc/init.d/umountnfs.sh ...
Installing new version of config file /etc/init.d/umountroot ...
Setting up netbase (4.45ubuntu1) ...
Installing new version of config file /etc/protocols ...
Installing new version of config file /etc/services ...
Setting up g++-4.5 (4.5.2-8ubuntu3) ...
Setting up perl (5.10.1-17ubuntu4) ...
Setting up module-init-tools (3.12-1ubuntu6) ...
Installing new version of config file /etc/modprobe.d/blacklist-framebuffer.conf ...
Removing obsolete conffile /etc/modprobe.d/intel-5300-iwlagn-disable11n.conf ...
Setting up initramfs-tools (0.98.8ubuntu3) ...
update-initramfs: deferring update (trigger activated)
Setting up procps (1:3.2.8-10ubuntu3) ...
Setting up udev (167-0ubuntu3) ...
Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev'
update-initramfs: deferring update (trigger activated)
Setting up plymouth (0.8.2-2ubuntu21) ...
Installing new version of config file /etc/init/plymouth-splash.conf ...
update-initramfs: deferring update (trigger activated)
Setting up libdpkg-perl (1.16.0~ubuntu6) ...
Setting up dpkg-dev (1.16.0~ubuntu6) ...
Setting up g++ (4:4.5.2-1ubuntu3) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Processing triggers for initramfs-tools ...
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '106c6649541ec515c09e93d54e99d7ea57d9365b', 'i386', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc']
Initiating build 106c6649541ec515c09e93d54e99d7ea57d9365b with 2 processor cores.
Automatic build of coot_0.7pre1+svn3470-0ubuntu1~natty1 on lemon by sbuild/i386 1.170.5
Build started at 20110414-1253
******************************************************************************
coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc exists in cwd
** Using build dependencies supplied by package:
Build-Depends: debhelper (>= 7), autotools-dev, automake, libtool, quilt, libmmdb-dev (>= 1.23), libclipper-dev, libgpp4-dev, libssm-dev (>= 1.1), libgsl0-dev, libglib2.0-dev, libgtk2.0-dev, libgtkglext1-dev, freeglut3-dev, libgnomecanvas2-dev, libgoocanvas-dev, python-dev, python-gtk2-dev, swig (>= 1.3.36), texinfo, imagemagick, ghostscript, sharutils
Checking for already installed source dependencies...
debhelper: missing
autotools-dev: missing
automake: missing
libtool: missing
quilt: missing
libmmdb-dev: missing
libclipper-dev: missing
libgpp4-dev: missing
libssm-dev: missing
libgsl0-dev: missing
libglib2.0-dev: missing
libgtk2.0-dev: missing
libgtkglext1-dev: missing
freeglut3-dev: missing
libgnomecanvas2-dev: missing
libgoocanvas-dev: missing
python-dev: missing
python-gtk2-dev: missing
swig: missing
texinfo: missing
imagemagick: missing
ghostscript: missing
sharutils: missing
Checking for source dependency conflicts...
  /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev automake libtool quilt libmmdb-dev libclipper-dev libgpp4-dev libssm-dev libgsl0-dev libglib2.0-dev libgtk2.0-dev libgtkglext1-dev freeglut3-dev libgnomecanvas2-dev libgoocanvas-dev python-dev python-gtk2-dev swig texinfo imagemagick ghostscript sharutils
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  autoconf bsdmainutils diffstat fftw-dev fftw2 file fontconfig
  fontconfig-config freeglut3 gettext gettext-base gir1.2-glib-2.0 groff-base
  gs-cjk-resource gsfonts html2text intltool-debian libart-2.0-2
  libart-2.0-dev libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3
  libavahi-common-data libavahi-common3 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libclipper2 libcroco3
  libcups2 libcupsimage2 libdatrie1 libdrm-dev libexpat1 libexpat1-dev
  libffi-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6
  libfreetype6-dev libgail-common libgail-dev libgail18 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-dev libgfortran3 libgirepository-1.0-1 libgl1-mesa-dev
  libgl1-mesa-glx libglade2-0 libglib2.0-bin libglib2.0-data libglu1-mesa
  libglu1-mesa-dev libgnomecanvas2-0 libgnomecanvas2-common
  libgoocanvas-common libgoocanvas3 libgpp4-0 libgs9 libgs9-common libgsl0ldbl
  libgtk2.0-0 libgtk2.0-common libgtkglext1 libice-dev libice6 libijs-0.35
  libjasper1 libjbig2dec0 libjpeg62 libkms1 liblcms1 liblqr-1-0 libltdl7
  libmagic1 libmagickcore3 libmagickwand3 libmmdb0 libmpich1.0gf libpango1.0-0
  libpango1.0-dev libpaper1 libpipeline1 libpixman-1-0 libpixman-1-dev
  libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpython2.7
  libsm-dev libsm6 libsqlite3-0 libssl-dev libssm0 libthai-data libthai0
  libtiff4 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6
  libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1
  libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1
  libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6
  libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev
  libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6
  libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6
  libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf
  python python-cairo python-gobject python-gobject-dev python-gtk2
  python-support python2.7 python2.7-dev sfftw-dev sfftw2 shared-mime-info
  ttf-dejavu-core ucf x11-common x11proto-composite-dev x11proto-core-dev
  x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev
  x11proto-randr-dev x11proto-render-dev x11proto-xext-dev
  x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
  autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist
  whois vacation dh-make mpich-bin defoma gettext-doc ghostscript-x
  ghostscript-cups hpijs groff ttf-sazanami-mincho ttf-sazanami-gothic
  ttf-arphic-ukai ttf-arphic-uming ttf-unfonts-core imagemagick-doc autotrace
  cups-bsd lpr lprng enscript ffmpeg gimp gnuplot grads hp2xx html2ps
  libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig
  xdg-utils ufraw-batch libcairo2-doc libclipper-doc cups-common libgail-doc
  libglib2.0-doc python-subunit libgnomecanvas2-doc libgpp4-doc gsl-ref-psdoc
  gsl-doc-pdf gsl-doc-info gsl-ref-html librsvg2-common gvfs libgtk2.0-doc
  libjasper-runtime liblcms-utils ttf-japanese-gothic ttf-japanese-mincho
  ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
  ttf-arphic-gkai00mp ttf-arphic-bkai00mp libpango1.0-doc libtool-doc
  automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl
  python-doc python-tk python-profiler python-gobject-dbg python-gtk2-doc
  python-numpy python2.7-doc python2.7-profiler procmail graphviz bsd-mailx
  mailx swig-examples swig-doc texlive-base texlive-latex-base
  texlive-generic-recommended texinfo-doc-nonfree
Recommended packages:
  curl wget lynx-cur cmap-adobe-japan1 cmap-adobe-cns1 cmap-adobe-gb1
  cmap-adobe-korea1 cmap-adobe-japan2 libmagickcore3-extra netpbm
  libgl1-mesa-dri hicolor-icon-theme libgtk2.0-bin x-ttcidfont-conf
  libpaper-utils libltdl-dev xml-core libmail-sendmail-perl
  python-gobject-cairo docbook-xsl
The following NEW packages will be installed:
  autoconf automake autotools-dev bsdmainutils debhelper diffstat fftw-dev
  fftw2 file fontconfig fontconfig-config freeglut3 freeglut3-dev gettext
  gettext-base ghostscript gir1.2-glib-2.0 groff-base gs-cjk-resource gsfonts
  html2text imagemagick intltool-debian libart-2.0-2 libart-2.0-dev
  libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3
  libavahi-common-data libavahi-common3 libcairo-gobject2
  libcairo-script-interpreter2 libcairo2 libcairo2-dev libclipper-dev
  libclipper2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdrm-dev libexpat1
  libexpat1-dev libffi-dev libffi5 libfontconfig1 libfontconfig1-dev
  libfreetype6 libfreetype6-dev libgail-common libgail-dev libgail18
  libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-dev libgfortran3 libgirepository-1.0-1
  libgl1-mesa-dev libgl1-mesa-glx libglade2-0 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libglu1-mesa libglu1-mesa-dev libgnomecanvas2-0
  libgnomecanvas2-common libgnomecanvas2-dev libgoocanvas-common
  libgoocanvas-dev libgoocanvas3 libgpp4-0 libgpp4-dev libgs9 libgs9-common
  libgsl0-dev libgsl0ldbl libgtk2.0-0 libgtk2.0-common libgtk2.0-dev
  libgtkglext1 libgtkglext1-dev libice-dev libice6 libijs-0.35 libjasper1
  libjbig2dec0 libjpeg62 libkms1 liblcms1 liblqr-1-0 libltdl7 libmagic1
  libmagickcore3 libmagickwand3 libmmdb-dev libmmdb0 libmpich1.0gf
  libpango1.0-0 libpango1.0-dev libpaper1 libpipeline1 libpixman-1-0
  libpixman-1-dev libpng12-dev libpopt0 libpthread-stubs0
  libpthread-stubs0-dev libpython2.7 libsm-dev libsm6 libsqlite3-0 libssl-dev
  libssm-dev libssm0 libthai-data libthai0 libtiff4 libtool libunistring0
  libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0
  libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev
  libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev
  libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev
  libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1
  libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev
  libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 m4 man-db
  mesa-common-dev mime-support pkg-config po-debconf python python-cairo
  python-dev python-gobject python-gobject-dev python-gtk2 python-gtk2-dev
  python-support python2.7 python2.7-dev quilt sfftw-dev sfftw2
  shared-mime-info sharutils swig texinfo ttf-dejavu-core ucf x11-common
  x11proto-composite-dev x11proto-core-dev x11proto-damage-dev
  x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev
  x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev
  xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded.
Need to get 76.8 MB of archives.
After this operation, 247 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  libexpat1 libsqlite3-0 libfreetype6 ucf ttf-dejavu-core fontconfig-config
  libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0
  libxcb-shm0 libxext6 libxrender1 libatk1.0-data libatk1.0-0
  libavahi-common-data libavahi-common3 libavahi-client3 libgfortran3
  x11-common libice6 x11proto-core-dev libice-dev libkms1 libpixman-1-0
  libcairo2 libdatrie1 libthai-data libthai0 libxft2 fontconfig libpango1.0-0
  libsm6 libjpeg62 libtiff4 libxcomposite1 libxfixes3 libxcursor1 libxdamage1
  libxi6 libxinerama1 libxau-dev libxdmcp-dev x11proto-input-dev
  x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev
  libxcb1-dev libx11-dev libxmu-headers libxrandr2 libxt6 libxxf86vm1
  libmagic1 file libpopt0 mime-support python2.7 python bsdmainutils
  gettext-base libffi5 libgirepository-1.0-1 gir1.2-glib-2.0 groff-base
  libpipeline1 libpython2.7 libxml2 man-db python-support python-cairo
  python-gobject m4 autoconf autotools-dev automake html2text libcroco3
  libunistring0 gettext intltool-debian po-debconf debhelper diffstat
  libmpich1.0gf fftw2 fftw-dev libgl1-mesa-glx freeglut3 libdrm-dev
  mesa-common-dev x11proto-xext-dev libxext-dev libgl1-mesa-dev libglu1-mesa
  libglu1-mesa-dev libsm-dev libxt-dev freeglut3-dev libcups2 libcupsimage2
  libijs-0.35 libjasper1 libjbig2dec0 liblcms1 libpaper1 libgs9-common
  gs-cjk-resource libgs9 gsfonts ghostscript liblqr-1-0 libltdl7
  libmagickcore3 libmagickwand3 imagemagick libart-2.0-2 pkg-config
  libart-2.0-dev libglib2.0-data libglib2.0-bin zlib1g-dev libglib2.0-dev
  libatk1.0-dev libcairo-gobject2 libcairo-script-interpreter2 libexpat1-dev
  libfreetype6-dev libfontconfig1-dev x11proto-render-dev libxrender-dev
  libpng12-dev libpixman-1-dev libxcb-render0-dev libxcb-shm0-dev
  libcairo2-dev libgpp4-0 libmmdb0 sfftw2 libclipper2 libmmdb-dev libgpp4-dev
  sfftw-dev libclipper-dev libgdk-pixbuf2.0-0 libgtk2.0-common
  shared-mime-info libgtk2.0-0 libgail18 libgail-common libgdk-pixbuf2.0-dev
  libxft-dev libpango1.0-dev x11proto-xinerama-dev libxinerama-dev
  xorg-sgml-doctools libxi-dev x11proto-randr-dev libxrandr-dev
  x11proto-fixes-dev libxfixes-dev libxcursor-dev x11proto-composite-dev
  libxcomposite-dev x11proto-damage-dev libxdamage-dev libxml2-utils
  libgtk2.0-dev libgail-dev libglade2-0 libgnomecanvas2-common
  libgnomecanvas2-0 libgnomecanvas2-dev libgoocanvas-common libgoocanvas3
  libgoocanvas-dev libgsl0ldbl libgsl0-dev libxmu6 libgtkglext1 libxmu-dev
  libgtkglext1-dev libssl-dev libssm0 libssm-dev libtool python2.7-dev
  python-dev libffi-dev python-gobject-dev python-gtk2 python-gtk2-dev quilt
  sharutils swig texinfo
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 i386 2.0.1-7ubuntu3 [135 kB]
Get:2 http://ftpmaster.internal/ubuntu/ natty/main libsqlite3-0 i386 3.7.4-2ubuntu5 [308 kB]
Get:3 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6 i386 2.4.4-1ubuntu2 [314 kB]
Get:4 http://ftpmaster.internal/ubuntu/ natty/main ucf all 3.0025+nmu1ubuntu1 [54.3 kB]
Get:5 http://ftpmaster.internal/ubuntu/ natty/main ttf-dejavu-core all 2.31-1 [1450 kB]
Get:6 http://ftpmaster.internal/ubuntu/ natty/main fontconfig-config all 2.8.0-2.1ubuntu3 [44.5 kB]
Get:7 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1 i386 2.8.0-2.1ubuntu3 [116 kB]
Get:8 http://ftpmaster.internal/ubuntu/ natty/main libxau6 i386 1:1.0.6-1ubuntu1 [7864 B]
Get:9 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp6 i386 1:1.1.0-1ubuntu1 [11.7 kB]
Get:10 http://ftpmaster.internal/ubuntu/ natty/main libxcb1 i386 1.7-2ubuntu2 [36.8 kB]
Get:11 http://ftpmaster.internal/ubuntu/ natty/main libx11-data all 2:1.4.2-1ubuntu3 [169 kB]
Get:12 http://ftpmaster.internal/ubuntu/ natty/main libx11-6 i386 2:1.4.2-1ubuntu3 [735 kB]
Get:13 http://ftpmaster.internal/ubuntu/ natty/main libxcb-render0 i386 1.7-2ubuntu2 [12.1 kB]
Get:14 http://ftpmaster.internal/ubuntu/ natty/main libxcb-shm0 i386 1.7-2ubuntu2 [6536 B]
Get:15 http://ftpmaster.internal/ubuntu/ natty/main libxext6 i386 2:1.2.0-2ubuntu1 [29.5 kB]
Get:16 http://ftpmaster.internal/ubuntu/ natty/main libxrender1 i386 1:0.9.6-1ubuntu1 [18.6 kB]
Get:17 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-data all 2.0.0-0ubuntu1 [11.7 kB]
Get:18 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-0 i386 2.0.0-0ubuntu1 [50.7 kB]
Get:19 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common-data i386 0.6.30-0ubuntu2 [22.6 kB]
Get:20 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common3 i386 0.6.30-0ubuntu2 [36.6 kB]
Get:21 http://ftpmaster.internal/ubuntu/ natty/main libavahi-client3 i386 0.6.30-0ubuntu2 [41.0 kB]
Get:22 http://ftpmaster.internal/ubuntu/ natty/main libgfortran3 i386 4.5.2-8ubuntu3 [236 kB]
Get:23 http://ftpmaster.internal/ubuntu/ natty/main x11-common all 1:7.6+4ubuntu3 [69.2 kB]
Get:24 http://ftpmaster.internal/ubuntu/ natty/main libice6 i386 2:1.0.7-1ubuntu1 [42.0 kB]
Get:25 http://ftpmaster.internal/ubuntu/ natty/main x11proto-core-dev all 7.0.20-1 [294 kB]
Get:26 http://ftpmaster.internal/ubuntu/ natty/main libice-dev i386 2:1.0.7-1ubuntu1 [127 kB]
Get:27 http://ftpmaster.internal/ubuntu/ natty/main libkms1 i386 2.4.23-1ubuntu6 [8936 B]
Get:28 http://ftpmaster.internal/ubuntu/ natty/main libpixman-1-0 i386 0.20.2-0ubuntu1 [180 kB]
Get:29 http://ftpmaster.internal/ubuntu/ natty/main libcairo2 i386 1.10.2-2ubuntu2 [452 kB]
Get:30 http://ftpmaster.internal/ubuntu/ natty/main libdatrie1 i386 0.2.4-1 [25.9 kB]
Get:31 http://ftpmaster.internal/ubuntu/ natty/main libthai-data all 0.1.14-2ubuntu1 [175 kB]
Get:32 http://ftpmaster.internal/ubuntu/ natty/main libthai0 i386 0.1.14-2ubuntu1 [17.5 kB]
Get:33 http://ftpmaster.internal/ubuntu/ natty/main libxft2 i386 2.2.0-2ubuntu2 [38.3 kB]
Get:34 http://ftpmaster.internal/ubuntu/ natty/main fontconfig i386 2.8.0-2.1ubuntu3 [155 kB]
Get:35 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-0 i386 1.28.4-0ubuntu1 [334 kB]
Get:36 http://ftpmaster.internal/ubuntu/ natty/main libsm6 i386 2:1.2.0-1ubuntu1 [16.5 kB]
Get:37 http://ftpmaster.internal/ubuntu/ natty/main libjpeg62 i386 6b1-1ubuntu1 [80.3 kB]
Get:38 http://ftpmaster.internal/ubuntu/ natty/main libtiff4 i386 3.9.4-5ubuntu5 [131 kB]
Get:39 http://ftpmaster.internal/ubuntu/ natty/main libxcomposite1 i386 1:0.4.3-1ubuntu1 [7312 B]
Get:40 http://ftpmaster.internal/ubuntu/ natty/main libxfixes3 i386 1:4.0.5-1ubuntu1 [10.8 kB]
Get:41 http://ftpmaster.internal/ubuntu/ natty/main libxcursor1 i386 1:1.1.11-1ubuntu1 [20.9 kB]
Get:42 http://ftpmaster.internal/ubuntu/ natty/main libxdamage1 i386 1:1.1.3-1ubuntu1 [7048 B]
Get:43 http://ftpmaster.internal/ubuntu/ natty/main libxi6 i386 2:1.4.1-1ubuntu2 [29.6 kB]
Get:44 http://ftpmaster.internal/ubuntu/ natty/main libxinerama1 i386 2:1.1.1-1ubuntu1 [7752 B]
Get:45 http://ftpmaster.internal/ubuntu/ natty/main libxau-dev i386 1:1.0.6-1ubuntu1 [11.2 kB]
Get:46 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp-dev i386 1:1.1.0-1ubuntu1 [46.0 kB]
Get:47 http://ftpmaster.internal/ubuntu/ natty/main x11proto-input-dev all 2.0.1-1ubuntu1 [68.5 kB]
Get:48 http://ftpmaster.internal/ubuntu/ natty/main x11proto-kb-dev all 1.0.5-1 [25.4 kB]
Get:49 http://ftpmaster.internal/ubuntu/ natty/main xtrans-dev all 1.2.6-1 [80.8 kB]
Get:50 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0 i386 0.3-2 [3196 B]
Get:51 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0-dev i386 0.3-2 [2414 B]
Get:52 http://ftpmaster.internal/ubuntu/ natty/main libxcb1-dev i386 1.7-2ubuntu2 [72.6 kB]
Get:53 http://ftpmaster.internal/ubuntu/ natty/main libx11-dev i386 2:1.4.2-1ubuntu3 [3104 kB]
Get:54 http://ftpmaster.internal/ubuntu/ natty/main libxmu-headers all 2:1.1.0-1 [56.3 kB]
Get:55 http://ftpmaster.internal/ubuntu/ natty/main libxrandr2 i386 2:1.3.1-1ubuntu1 [16.4 kB]
Get:56 http://ftpmaster.internal/ubuntu/ natty/main libxt6 i386 1:1.0.9-1ubuntu1 [161 kB]
Get:57 http://ftpmaster.internal/ubuntu/ natty/main libxxf86vm1 i386 1:1.1.1-1ubuntu1 [11.0 kB]
Get:58 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 i386 5.04-5ubuntu2 [204 kB]
Get:59 http://ftpmaster.internal/ubuntu/ natty/main file i386 5.04-5ubuntu2 [22.1 kB]
Get:60 http://ftpmaster.internal/ubuntu/ natty/main libpopt0 i386 1.16-1 [33.9 kB]
Get:61 http://ftpmaster.internal/ubuntu/ natty/main mime-support all 3.51-1ubuntu1 [30.7 kB]
Get:62 http://ftpmaster.internal/ubuntu/ natty/main python2.7 i386 2.7.1-5ubuntu2 [2500 kB]
Get:63 http://ftpmaster.internal/ubuntu/ natty/main python all 2.7.1-0ubuntu5 [163 kB]
Get:64 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils i386 8.2.2 [191 kB]
Get:65 http://ftpmaster.internal/ubuntu/ natty/main gettext-base i386 0.18.1.1-3ubuntu1 [56.6 kB]
Get:66 http://ftpmaster.internal/ubuntu/ natty/main libffi5 i386 3.0.9-3ubuntu1 [15.7 kB]
Get:67 http://ftpmaster.internal/ubuntu/ natty/main libgirepository-1.0-1 i386 0.10.7-0ubuntu1 [90.4 kB]
Get:68 http://ftpmaster.internal/ubuntu/ natty/main gir1.2-glib-2.0 i386 0.10.7-0ubuntu1 [138 kB]
Get:69 http://ftpmaster.internal/ubuntu/ natty/main groff-base i386 1.21-5 [990 kB]
Get:70 http://ftpmaster.internal/ubuntu/ natty/main libpipeline1 i386 1.2.0-1 [23.5 kB]
Get:71 http://ftpmaster.internal/ubuntu/ natty/main libpython2.7 i386 2.7.1-5ubuntu2 [1076 kB]
Get:72 http://ftpmaster.internal/ubuntu/ natty/main libxml2 i386 2.7.8.dfsg-2 [607 kB]
Get:73 http://ftpmaster.internal/ubuntu/ natty/main man-db i386 2.5.9-4 [676 kB]
Get:74 http://ftpmaster.internal/ubuntu/ natty/main python-support all 1.0.10ubuntu3 [25.9 kB]
Get:75 http://ftpmaster.internal/ubuntu/ natty/main python-cairo i386 1.8.8-1ubuntu1 [69.0 kB]
Get:76 http://ftpmaster.internal/ubuntu/ natty/main python-gobject i386 2.28.3-1 [474 kB]
Get:77 http://ftpmaster.internal/ubuntu/ natty/main m4 i386 1.4.14-3 [276 kB]
Get:78 http://ftpmaster.internal/ubuntu/ natty/main autoconf all 2.67-2ubuntu1 [569 kB]
Get:79 http://ftpmaster.internal/ubuntu/ natty/main autotools-dev all 20100122.1 [70.7 kB]
Get:80 http://ftpmaster.internal/ubuntu/ natty/main automake all 1:1.11.1-1ubuntu1 [544 kB]
Get:81 http://ftpmaster.internal/ubuntu/ natty/main html2text i386 1.3.2a-15 [101 kB]
Get:82 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 i386 0.6.2-1 [92.5 kB]
Get:83 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 i386 0.9.3-3 [423 kB]
Get:84 http://ftpmaster.internal/ubuntu/ natty/main gettext i386 0.18.1.1-3ubuntu1 [1180 kB]
Get:85 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB]
Get:86 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16+nmu1 [212 kB]
Get:87 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.1.2ubuntu4 [482 kB]
Get:88 http://ftpmaster.internal/ubuntu/ natty/main diffstat i386 1.54-1 [21.3 kB]
Get:89 http://ftpmaster.internal/ubuntu/ natty/universe libmpich1.0gf i386 1.2.7-9.1ubuntu1 [734 kB]
Get:90 http://ftpmaster.internal/ubuntu/ natty/universe fftw2 i386 2.1.3-22 [223 kB]
Get:91 http://ftpmaster.internal/ubuntu/ natty/universe fftw-dev i386 2.1.3-22 [258 kB]
Get:92 http://ftpmaster.internal/ubuntu/ natty/main libgl1-mesa-glx i386 7.10.2-0ubuntu1 [94.2 kB]
Get:93 http://ftpmaster.internal/ubuntu/ natty/main freeglut3 i386 2.6.0-1ubuntu2 [77.5 kB]
Get:94 http://ftpmaster.internal/ubuntu/ natty/main libdrm-dev i386 2.4.23-1ubuntu6 [114 kB]
Get:95 http://ftpmaster.internal/ubuntu/ natty/main mesa-common-dev i386 7.10.2-0ubuntu1 [226 kB]
Get:96 http://ftpmaster.internal/ubuntu/ natty/main x11proto-xext-dev all 7.1.99.0~git20110111.9df8b776-0ubuntu2 [254 kB]
Get:97 http://ftpmaster.internal/ubuntu/ natty/main libxext-dev i386 2:1.2.0-2ubuntu1 [130 kB]
Get:98 http://ftpmaster.internal/ubuntu/ natty/main libgl1-mesa-dev i386 7.10.2-0ubuntu1 [7600 B]
Get:99 http://ftpmaster.internal/ubuntu/ natty/main libglu1-mesa i386 7.10.2-0ubuntu1 [161 kB]
Get:100 http://ftpmaster.internal/ubuntu/ natty/main libglu1-mesa-dev i386 7.10.2-0ubuntu1 [188 kB]
Get:101 http://ftpmaster.internal/ubuntu/ natty/main libsm-dev i386 2:1.2.0-1ubuntu1 [87.7 kB]
Get:102 http://ftpmaster.internal/ubuntu/ natty/main libxt-dev i386 1:1.0.9-1ubuntu1 [457 kB]
Get:103 http://ftpmaster.internal/ubuntu/ natty/main freeglut3-dev i386 2.6.0-1ubuntu2 [146 kB]
Get:104 http://ftpmaster.internal/ubuntu/ natty/main libcups2 i386 1.4.6-4 [159 kB]
Get:105 http://ftpmaster.internal/ubuntu/ natty/main libcupsimage2 i386 1.4.6-4 [56.1 kB]
Get:106 http://ftpmaster.internal/ubuntu/ natty/main libijs-0.35 i386 0.35-7ubuntu1 [14.7 kB]
Get:107 http://ftpmaster.internal/ubuntu/ natty/main libjasper1 i386 1.900.1-7ubuntu2 [140 kB]
Get:108 http://ftpmaster.internal/ubuntu/ natty/main libjbig2dec0 i386 0.11-1ubuntu1 [38.2 kB]
Get:109 http://ftpmaster.internal/ubuntu/ natty/main liblcms1 i386 1.18.dfsg-1.2ubuntu1 [95.9 kB]
Get:110 http://ftpmaster.internal/ubuntu/ natty/main libpaper1 i386 1.1.24 [20.9 kB]
Get:111 http://ftpmaster.internal/ubuntu/ natty/main libgs9-common all 9.01~dfsg-1ubuntu5 [4393 kB]
Get:112 http://ftpmaster.internal/ubuntu/ natty/main gs-cjk-resource all 1.20100103-2 [1478 kB]
Get:113 http://ftpmaster.internal/ubuntu/ natty/main libgs9 i386 9.01~dfsg-1ubuntu5 [2112 kB]
Get:114 http://ftpmaster.internal/ubuntu/ natty/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB]
Get:115 http://ftpmaster.internal/ubuntu/ natty/main ghostscript i386 9.01~dfsg-1ubuntu5 [44.8 kB]
Get:116 http://ftpmaster.internal/ubuntu/ natty/main liblqr-1-0 i386 0.4.1-1ubuntu2 [34.2 kB]
Get:117 http://ftpmaster.internal/ubuntu/ natty/main libltdl7 i386 2.2.6b-2ubuntu3 [34.3 kB]
Get:118 http://ftpmaster.internal/ubuntu/ natty/main libmagickcore3 i386 7:6.6.2.6-1ubuntu4 [1648 kB]
Get:119 http://ftpmaster.internal/ubuntu/ natty/main libmagickwand3 i386 7:6.6.2.6-1ubuntu4 [304 kB]
Get:120 http://ftpmaster.internal/ubuntu/ natty/main imagemagick i386 7:6.6.2.6-1ubuntu4 [50.1 kB]
Get:121 http://ftpmaster.internal/ubuntu/ natty/main libart-2.0-2 i386 2.3.21-1 [53.3 kB]
Get:122 http://ftpmaster.internal/ubuntu/ natty/main pkg-config i386 0.25-1.1ubuntu1 [39.2 kB]
Get:123 http://ftpmaster.internal/ubuntu/ natty/main libart-2.0-dev i386 2.3.21-1 [68.0 kB]
Get:124 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-data all 2.28.5-0ubuntu1 [69.6 kB]
Get:125 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-bin i386 2.28.5-0ubuntu1 [27.2 kB]
Get:126 http://ftpmaster.internal/ubuntu/ natty/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu3 [160 kB]
Get:127 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-dev i386 2.28.5-0ubuntu1 [1417 kB]
Get:128 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-dev i386 2.0.0-0ubuntu1 [113 kB]
Get:129 http://ftpmaster.internal/ubuntu/ natty/main libcairo-gobject2 i386 1.10.2-2ubuntu2 [111 kB]
Get:130 http://ftpmaster.internal/ubuntu/ natty/main libcairo-script-interpreter2 i386 1.10.2-2ubuntu2 [148 kB]
Get:131 http://ftpmaster.internal/ubuntu/ natty/main libexpat1-dev i386 2.0.1-7ubuntu3 [211 kB]
Get:132 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6-dev i386 2.4.4-1ubuntu2 [726 kB]
Get:133 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1-dev i386 2.8.0-2.1ubuntu3 [641 kB]
Get:134 http://ftpmaster.internal/ubuntu/ natty/main x11proto-render-dev all 2:0.11.1-1 [18.5 kB]
Get:135 http://ftpmaster.internal/ubuntu/ natty/main libxrender-dev i386 1:0.9.6-1ubuntu1 [27.2 kB]
Get:136 http://ftpmaster.internal/ubuntu/ natty/main libpng12-dev i386 1.2.44-1ubuntu3 [208 kB]
Get:137 http://ftpmaster.internal/ubuntu/ natty/main libpixman-1-dev i386 0.20.2-0ubuntu1 [206 kB]
Get:138 http://ftpmaster.internal/ubuntu/ natty/main libxcb-render0-dev i386 1.7-2ubuntu2 [19.4 kB]
Get:139 http://ftpmaster.internal/ubuntu/ natty/main libxcb-shm0-dev i386 1.7-2ubuntu2 [8006 B]
Get:140 http://ftpmaster.internal/ubuntu/ natty/main libcairo2-dev i386 1.10.2-2ubuntu2 [8714 kB]
Get:141 http://ftpmaster.internal/ubuntu/ natty/universe libgpp4-0 i386 1.3.1-0ubuntu1 [121 kB]
Get:142 http://ftpmaster.internal/ubuntu/ natty/universe libmmdb0 i386 1.23.2.1-0ubuntu1 [423 kB]
Get:143 http://ftpmaster.internal/ubuntu/ natty/universe sfftw2 i386 2.1.3-22 [219 kB]
Get:144 http://ftpmaster.internal/ubuntu/ natty/universe libclipper2 i386 2.1+20100511-0ubuntu1 [847 kB]
Get:145 http://ftpmaster.internal/ubuntu/ natty/universe libmmdb-dev i386 1.23.2.1-0ubuntu1 [566 kB]
Get:146 http://ftpmaster.internal/ubuntu/ natty/universe libgpp4-dev i386 1.3.1-0ubuntu1 [157 kB]
Get:147 http://ftpmaster.internal/ubuntu/ natty/universe sfftw-dev i386 2.1.3-22 [252 kB]
Get:148 http://ftpmaster.internal/ubuntu/ natty/universe libclipper-dev i386 2.1+20100511-0ubuntu1 [1234 kB]
Get:149 http://ftpmaster.internal/ubuntu/ natty/main libgdk-pixbuf2.0-0 i386 2.23.3-0ubuntu1 [177 kB]
Get:150 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-common all 2.24.4-0ubuntu1 [115 kB]
Get:151 http://ftpmaster.internal/ubuntu/ natty/main shared-mime-info i386 0.90-1ubuntu1 [435 kB]
Get:152 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-0 i386 2.24.4-0ubuntu1 [2013 kB]
Get:153 http://ftpmaster.internal/ubuntu/ natty/main libgail18 i386 2.24.4-0ubuntu1 [18.6 kB]
Get:154 http://ftpmaster.internal/ubuntu/ natty/main libgail-common i386 2.24.4-0ubuntu1 [130 kB]
Get:155 http://ftpmaster.internal/ubuntu/ natty/main libgdk-pixbuf2.0-dev i386 2.23.3-0ubuntu1 [47.9 kB]
Get:156 http://ftpmaster.internal/ubuntu/ natty/main libxft-dev i386 2.2.0-2ubuntu2 [49.9 kB]
Get:157 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-dev i386 1.28.4-0ubuntu1 [438 kB]
Get:158 http://ftpmaster.internal/ubuntu/ natty/main x11proto-xinerama-dev all 1.2.1-1 [4870 B]
Get:159 http://ftpmaster.internal/ubuntu/ natty/main libxinerama-dev i386 2:1.1.1-1ubuntu1 [10.0 kB]
Get:160 http://ftpmaster.internal/ubuntu/ natty/main xorg-sgml-doctools all 1:1.6-1 [5400 B]
Get:161 http://ftpmaster.internal/ubuntu/ natty/main libxi-dev i386 2:1.4.1-1ubuntu2 [212 kB]
Get:162 http://ftpmaster.internal/ubuntu/ natty/main x11proto-randr-dev all 1.4.0+git20101207.0d32bb07-0ubuntu1 [32.0 kB]
Get:163 http://ftpmaster.internal/ubuntu/ natty/main libxrandr-dev i386 2:1.3.1-1ubuntu1 [24.1 kB]
Get:164 http://ftpmaster.internal/ubuntu/ natty/main x11proto-fixes-dev all 1:4.1.2-1 [11.3 kB]
Get:165 http://ftpmaster.internal/ubuntu/ natty/main libxfixes-dev i386 1:4.0.5-1ubuntu1 [13.1 kB]
Get:166 http://ftpmaster.internal/ubuntu/ natty/main libxcursor-dev i386 1:1.1.11-1ubuntu1 [28.9 kB]
Get:167 http://ftpmaster.internal/ubuntu/ natty/main x11proto-composite-dev all 1:0.4.2-1 [8866 B]
Get:168 http://ftpmaster.internal/ubuntu/ natty/main libxcomposite-dev i386 1:0.4.3-1ubuntu1 [10.8 kB]
Get:169 http://ftpmaster.internal/ubuntu/ natty/main x11proto-damage-dev all 1:1.2.1-1 [6586 B]
Get:170 http://ftpmaster.internal/ubuntu/ natty/main libxdamage-dev i386 1:1.1.3-1ubuntu1 [6804 B]
Get:171 http://ftpmaster.internal/ubuntu/ natty/main libxml2-utils i386 2.7.8.dfsg-2 [77.8 kB]
Get:172 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-dev i386 2.24.4-0ubuntu1 [3394 kB]
Get:173 http://ftpmaster.internal/ubuntu/ natty/main libgail-dev i386 2.24.4-0ubuntu1 [19.3 kB]
Get:174 http://ftpmaster.internal/ubuntu/ natty/main libglade2-0 i386 1:2.6.4-1build1 [51.9 kB]
Get:175 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-common all 2.30.3-0ubuntu1 [8990 B]
Get:176 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-0 i386 2.30.3-0ubuntu1 [83.8 kB]
Get:177 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-dev i386 2.30.3-0ubuntu1 [119 kB]
Get:178 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas-common all 0.15-1 [29.5 kB]
Get:179 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas3 i386 0.15-1 [98.3 kB]
Get:180 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas-dev i386 0.15-1 [247 kB]
Get:181 http://ftpmaster.internal/ubuntu/ natty/main libgsl0ldbl i386 1.14+dfsg-1 [899 kB]
Get:182 http://ftpmaster.internal/ubuntu/ natty/main libgsl0-dev i386 1.14+dfsg-1 [1129 kB]
Get:183 http://ftpmaster.internal/ubuntu/ natty/main libxmu6 i386 2:1.1.0-1 [47.9 kB]
Get:184 http://ftpmaster.internal/ubuntu/ natty/universe libgtkglext1 i386 1.2.0-1.1ubuntu1 [92.4 kB]
Get:185 http://ftpmaster.internal/ubuntu/ natty/main libxmu-dev i386 2:1.1.0-1 [53.1 kB]
Get:186 http://ftpmaster.internal/ubuntu/ natty/universe libgtkglext1-dev i386 1.2.0-1.1ubuntu1 [431 kB]
Get:187 http://ftpmaster.internal/ubuntu/ natty/main libssl-dev i386 0.9.8o-5ubuntu1 [2019 kB]
Get:188 http://ftpmaster.internal/ubuntu/ natty/universe libssm0 i386 1.1-0ubuntu1 [69.9 kB]
Get:189 http://ftpmaster.internal/ubuntu/ natty/universe libssm-dev i386 1.1-0ubuntu1 [77.6 kB]
Get:190 http://ftpmaster.internal/ubuntu/ natty/main libtool i386 2.2.6b-2ubuntu3 [264 kB]
Get:191 http://ftpmaster.internal/ubuntu/ natty/main python2.7-dev i386 2.7.1-5ubuntu2 [4724 kB]
Get:192 http://ftpmaster.internal/ubuntu/ natty/main python-dev all 2.7.1-0ubuntu5 [1012 B]
Get:193 http://ftpmaster.internal/ubuntu/ natty/main libffi-dev i386 3.0.9-3ubuntu1 [83.2 kB]
Get:194 http://ftpmaster.internal/ubuntu/ natty/main python-gobject-dev all 2.28.3-1 [269 kB]
Get:195 http://ftpmaster.internal/ubuntu/ natty/main python-gtk2 i386 2.22.0-0ubuntu1 [1396 kB]
Get:196 http://ftpmaster.internal/ubuntu/ natty/main python-gtk2-dev all 2.22.0-0ubuntu1 [142 kB]
Get:197 http://ftpmaster.internal/ubuntu/ natty/main quilt all 0.48-7 [319 kB]
Get:198 http://ftpmaster.internal/ubuntu/ natty/main sharutils i386 1:4.9-1 [107 kB]
Get:199 http://ftpmaster.internal/ubuntu/ natty/main swig i386 1.3.40-3ubuntu1 [1207 kB]
Get:200 http://ftpmaster.internal/ubuntu/ natty/main texinfo i386 4.13a.dfsg.1-6ubuntu3 [437 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 76.8 MB in 3s (21.8 MB/s)
Selecting previously deselected package libexpat1.
(Reading database ... 13747 files and directories currently installed.)
Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_i386.deb) ...
Selecting previously deselected package libsqlite3-0.
Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.4-2ubuntu5_i386.deb) ...
Selecting previously deselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1ubuntu2_i386.deb) ...
Selecting previously deselected package ucf.
Unpacking ucf (from .../ucf_3.0025+nmu1ubuntu1_all.deb) ...
Moving old data out of the way
Selecting previously deselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.31-1_all.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1ubuntu3_all.deb) ...
Selecting previously deselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1ubuntu3_i386.deb) ...
Selecting previously deselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1ubuntu1_i386.deb) ...
Selecting previously deselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-1ubuntu1_i386.deb) ...
Selecting previously deselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.7-2ubuntu2_i386.deb) ...
Selecting previously deselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.2-1ubuntu3_all.deb) ...
Selecting previously deselected package libx11-6.
Unpacking libx11-6 (from .../libx11-6_2%3a1.4.2-1ubuntu3_i386.deb) ...
Selecting previously deselected package libxcb-render0.
Unpacking libxcb-render0 (from .../libxcb-render0_1.7-2ubuntu2_i386.deb) ...
Selecting previously deselected package libxcb-shm0.
Unpacking libxcb-shm0 (from .../libxcb-shm0_1.7-2ubuntu2_i386.deb) ...
Selecting previously deselected package libxext6.
Unpacking libxext6 (from .../libxext6_2%3a1.2.0-2ubuntu1_i386.deb) ...
Selecting previously deselected package libxrender1.
Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-1ubuntu1_i386.deb) ...
Selecting previously deselected package libatk1.0-data.
Unpacking libatk1.0-data (from .../libatk1.0-data_2.0.0-0ubuntu1_all.deb) ...
Selecting previously deselected package libatk1.0-0.
Unpacking libatk1.0-0 (from .../libatk1.0-0_2.0.0-0ubuntu1_i386.deb) ...
Selecting previously deselected package libavahi-common-data.
Unpacking libavahi-common-data (from .../libavahi-common-data_0.6.30-0ubuntu2_i386.deb) ...
Selecting previously deselected package libavahi-common3.
Unpacking libavahi-common3 (from .../libavahi-common3_0.6.30-0ubuntu2_i386.deb) ...
Selecting previously deselected package libavahi-client3.
Unpacking libavahi-client3 (from .../libavahi-client3_0.6.30-0ubuntu2_i386.deb) ...
Selecting previously deselected package libgfortran3.
Unpacking libgfortran3 (from .../libgfortran3_4.5.2-8ubuntu3_i386.deb) ...
Selecting previously deselected package x11-common.
Unpacking x11-common (from .../x11-common_1%3a7.6+4ubuntu3_all.deb) ...
Selecting previously deselected package libice6.
Unpacking libice6 (from .../libice6_2%3a1.0.7-1ubuntu1_i386.deb) ...
Selecting previously deselected package x11proto-core-dev.
Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.20-1_all.deb) ...
Setting up x11-common (1:7.6+4ubuntu3) ...
Selecting previously deselected package libice-dev.
(Reading database ... 14347 files and directories currently installed.)
Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-1ubuntu1_i386.deb) ...
Selecting previously deselected package libkms1.
Unpacking libkms1 (from .../libkms1_2.4.23-1ubuntu6_i386.deb) ...
Selecting previously deselected package libpixman-1-0.
Unpacking libpixman-1-0 (from .../libpixman-1-0_0.20.2-0ubuntu1_i386.deb) ...
Selecting previously deselected package libcairo2.
Unpacking libcairo2 (from .../libcairo2_1.10.2-2ubuntu2_i386.deb) ...
Selecting previously deselected package libdatrie1.
Unpacking libdatrie1 (from .../libdatrie1_0.2.4-1_i386.deb) ...
Selecting previously deselected package libthai-data.
Unpacking libthai-data (from .../libthai-data_0.1.14-2ubuntu1_all.deb) ...
Selecting previously deselected package libthai0.
Unpacking libthai0 (from .../libthai0_0.1.14-2ubuntu1_i386.deb) ...
Selecting previously deselected package libxft2.
Unpacking libxft2 (from .../libxft2_2.2.0-2ubuntu2_i386.deb) ...
Selecting previously deselected package fontconfig.
Unpacking fontconfig (from .../fontconfig_2.8.0-2.1ubuntu3_i386.deb) ...
Selecting previously deselected package libpango1.0-0.
Unpacking libpango1.0-0 (from .../libpango1.0-0_1.28.4-0ubuntu1_i386.deb) ...
Selecting previously deselected package libsm6.
Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1ubuntu1_i386.deb) ...
Selecting previously deselected package libjpeg62.
Unpacking libjpeg62 (from .../libjpeg62_6b1-1ubuntu1_i386.deb) ...
Selecting previously deselected package libtiff4.
Unpacking libtiff4 (from .../libtiff4_3.9.4-5ubuntu5_i386.deb) ...
Selecting previously deselected package libxcomposite1.
Unpacking libxcomposite1 (from .../libxcomposite1_1%3a0.4.3-1ubuntu1_i386.deb) ...
Selecting previously deselected package libxfixes3.
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Unpacking sharutils (from .../sharutils_1%3a4.9-1_i386.deb) ...
Selecting previously deselected package swig.
Unpacking swig (from .../swig_1.3.40-3ubuntu1_i386.deb) ...
Selecting previously deselected package texinfo.
Unpacking texinfo (from .../texinfo_4.13a.dfsg.1-6ubuntu3_i386.deb) ...
Processing triggers for libglib2.0-0 ...
No schema files found: doing nothing.
Setting up libexpat1 (2.0.1-7ubuntu3) ...
Setting up libsqlite3-0 (3.7.4-2ubuntu5) ...
Setting up libfreetype6 (2.4.4-1ubuntu2) ...
Setting up ucf (3.0025+nmu1ubuntu1) ...
Setting up ttf-dejavu-core (2.31-1) ...
Setting up fontconfig-config (2.8.0-2.1ubuntu3) ...
Setting up libfontconfig1 (2.8.0-2.1ubuntu3) ...
Setting up libxau6 (1:1.0.6-1ubuntu1) ...
Setting up libxdmcp6 (1:1.1.0-1ubuntu1) ...
Setting up libxcb1 (1.7-2ubuntu2) ...
Setting up libx11-data (2:1.4.2-1ubuntu3) ...
Setting up libx11-6 (2:1.4.2-1ubuntu3) ...
Setting up libxcb-render0 (1.7-2ubuntu2) ...
Setting up libxcb-shm0 (1.7-2ubuntu2) ...
Setting up libxext6 (2:1.2.0-2ubuntu1) ...
Setting up libxrender1 (1:0.9.6-1ubuntu1) ...
Setting up libatk1.0-data (2.0.0-0ubuntu1) ...
Setting up libatk1.0-0 (2.0.0-0ubuntu1) ...
Setting up libavahi-common-data (0.6.30-0ubuntu2) ...
Setting up libavahi-common3 (0.6.30-0ubuntu2) ...
Setting up libavahi-client3 (0.6.30-0ubuntu2) ...
Setting up libgfortran3 (4.5.2-8ubuntu3) ...
Setting up libice6 (2:1.0.7-1ubuntu1) ...
Setting up x11proto-core-dev (7.0.20-1) ...
Setting up libice-dev (2:1.0.7-1ubuntu1) ...
Setting up libkms1 (2.4.23-1ubuntu6) ...
Setting up libpixman-1-0 (0.20.2-0ubuntu1) ...
Setting up libcairo2 (1.10.2-2ubuntu2) ...
Setting up libdatrie1 (0.2.4-1) ...
Setting up libthai-data (0.1.14-2ubuntu1) ...
Setting up libthai0 (0.1.14-2ubuntu1) ...
Setting up libxft2 (2.2.0-2ubuntu2) ...
Setting up fontconfig (2.8.0-2.1ubuntu3) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libpango1.0-0 (1.28.4-0ubuntu1) ...
Setting up libsm6 (2:1.2.0-1ubuntu1) ...
Setting up libjpeg62 (6b1-1ubuntu1) ...
Setting up libtiff4 (3.9.4-5ubuntu5) ...
Setting up libxcomposite1 (1:0.4.3-1ubuntu1) ...
Setting up libxfixes3 (1:4.0.5-1ubuntu1) ...
Setting up libxcursor1 (1:1.1.11-1ubuntu1) ...
Setting up libxdamage1 (1:1.1.3-1ubuntu1) ...
Setting up libxi6 (2:1.4.1-1ubuntu2) ...
Setting up libxinerama1 (2:1.1.1-1ubuntu1) ...
Setting up libxau-dev (1:1.0.6-1ubuntu1) ...
Setting up libxdmcp-dev (1:1.1.0-1ubuntu1) ...
Setting up x11proto-input-dev (2.0.1-1ubuntu1) ...
Setting up x11proto-kb-dev (1.0.5-1) ...
Setting up xtrans-dev (1.2.6-1) ...
Setting up libpthread-stubs0 (0.3-2) ...
Setting up libpthread-stubs0-dev (0.3-2) ...
Setting up libxcb1-dev (1.7-2ubuntu2) ...
Setting up libx11-dev (2:1.4.2-1ubuntu3) ...
Setting up libxmu-headers (2:1.1.0-1) ...
Setting up libxrandr2 (2:1.3.1-1ubuntu1) ...
Setting up libxt6 (1:1.0.9-1ubuntu1) ...
Setting up libxxf86vm1 (1:1.1.1-1ubuntu1) ...
Setting up libmagic1 (5.04-5ubuntu2) ...
Setting up file (5.04-5ubuntu2) ...
Setting up libpopt0 (1.16-1) ...
Setting up mime-support (3.51-1ubuntu1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode.
Setting up python2.7 (2.7.1-5ubuntu2) ...
Setting up python (2.7.1-0ubuntu5) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up gettext-base (0.18.1.1-3ubuntu1) ...
Setting up libffi5 (3.0.9-3ubuntu1) ...
Setting up libgirepository-1.0-1 (0.10.7-0ubuntu1) ...
Setting up gir1.2-glib-2.0 (0.10.7-0ubuntu1) ...
Setting up groff-base (1.21-5) ...
Setting up libpipeline1 (1.2.0-1) ...
Setting up libpython2.7 (2.7.1-5ubuntu2) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up man-db (2.5.9-4) ...
Building database of manual pages ...
Setting up python-support (1.0.10ubuntu3) ...
Setting up python-cairo (1.8.8-1ubuntu1) ...
Setting up python-gobject (2.28.3-1) ...
Setting up m4 (1.4.14-3) ...
Setting up autoconf (2.67-2ubuntu1) ...
Setting up autotools-dev (20100122.1) ...
Setting up automake (1:1.11.1-1ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode.
Setting up html2text (1.3.2a-15) ...
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3ubuntu1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.2ubuntu4) ...
Setting up diffstat (1.54-1) ...
Setting up libmpich1.0gf (1.2.7-9.1ubuntu1) ...
Setting up fftw2 (2.1.3-22) ...
Setting up fftw-dev (2.1.3-22) ...
Setting up libgl1-mesa-glx (7.10.2-0ubuntu1) ...
update-alternatives: using /usr/lib/mesa/ld.so.conf to provide /etc/ld.so.conf.d/GL.conf (gl_conf) in auto mode.
Setting up freeglut3 (2.6.0-1ubuntu2) ...
Setting up libdrm-dev (2.4.23-1ubuntu6) ...
Setting up mesa-common-dev (7.10.2-0ubuntu1) ...
Setting up x11proto-xext-dev (7.1.99.0~git20110111.9df8b776-0ubuntu2) ...
Setting up libxext-dev (2:1.2.0-2ubuntu1) ...
Setting up libgl1-mesa-dev (7.10.2-0ubuntu1) ...
Setting up libglu1-mesa (7.10.2-0ubuntu1) ...
Setting up libglu1-mesa-dev (7.10.2-0ubuntu1) ...
Setting up libsm-dev (2:1.2.0-1ubuntu1) ...
Setting up libxt-dev (1:1.0.9-1ubuntu1) ...
Setting up freeglut3-dev (2.6.0-1ubuntu2) ...
Setting up libcups2 (1.4.6-4) ...
Setting up libcupsimage2 (1.4.6-4) ...
Setting up libijs-0.35 (0.35-7ubuntu1) ...
Setting up libjasper1 (1.900.1-7ubuntu2) ...
Setting up libjbig2dec0 (0.11-1ubuntu1) ...
Setting up liblcms1 (1.18.dfsg-1.2ubuntu1) ...
Setting up libpaper1 (1.1.24) ...

Creating config file /etc/papersize with new version
Setting up libgs9-common (9.01~dfsg-1ubuntu5) ...
Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ...
Setting up liblqr-1-0 (0.4.1-1ubuntu2) ...
Setting up libltdl7 (2.2.6b-2ubuntu3) ...
Setting up libmagickcore3 (7:6.6.2.6-1ubuntu4) ...
Setting up libmagickwand3 (7:6.6.2.6-1ubuntu4) ...
Setting up imagemagick (7:6.6.2.6-1ubuntu4) ...
Setting up libart-2.0-2 (2.3.21-1) ...
Setting up pkg-config (0.25-1.1ubuntu1) ...
Setting up libart-2.0-dev (2.3.21-1) ...
Setting up libglib2.0-data (2.28.5-0ubuntu1) ...
Setting up libglib2.0-bin (2.28.5-0ubuntu1) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ...
Setting up libglib2.0-dev (2.28.5-0ubuntu1) ...
Setting up libatk1.0-dev (2.0.0-0ubuntu1) ...
Setting up libcairo-gobject2 (1.10.2-2ubuntu2) ...
Setting up libcairo-script-interpreter2 (1.10.2-2ubuntu2) ...
Setting up libexpat1-dev (2.0.1-7ubuntu3) ...
Setting up libfreetype6-dev (2.4.4-1ubuntu2) ...
Setting up libfontconfig1-dev (2.8.0-2.1ubuntu3) ...
Setting up x11proto-render-dev (2:0.11.1-1) ...
Setting up libxrender-dev (1:0.9.6-1ubuntu1) ...
Setting up libpng12-dev (1.2.44-1ubuntu3) ...
Setting up libpixman-1-dev (0.20.2-0ubuntu1) ...
Setting up libxcb-render0-dev (1.7-2ubuntu2) ...
Setting up libxcb-shm0-dev (1.7-2ubuntu2) ...
Setting up libcairo2-dev (1.10.2-2ubuntu2) ...
Setting up libgpp4-0 (1.3.1-0ubuntu1) ...
Setting up libmmdb0 (1.23.2.1-0ubuntu1) ...
Setting up sfftw2 (2.1.3-22) ...
Setting up libclipper2 (2.1+20100511-0ubuntu1) ...
Setting up libmmdb-dev (1.23.2.1-0ubuntu1) ...
Setting up libgpp4-dev (1.3.1-0ubuntu1) ...
Setting up sfftw-dev (2.1.3-22) ...
Setting up libclipper-dev (2.1+20100511-0ubuntu1) ...
Setting up libgdk-pixbuf2.0-0 (2.23.3-0ubuntu1) ...
Setting up libgtk2.0-common (2.24.4-0ubuntu1) ...
Setting up shared-mime-info (0.90-1ubuntu1) ...
Setting up libgtk2.0-0 (2.24.4-0ubuntu1) ...
Setting up libgail18 (2.24.4-0ubuntu1) ...
Setting up libgail-common (2.24.4-0ubuntu1) ...
Setting up libgdk-pixbuf2.0-dev (2.23.3-0ubuntu1) ...
Setting up libxft-dev (2.2.0-2ubuntu2) ...
Setting up libpango1.0-dev (1.28.4-0ubuntu1) ...
Setting up x11proto-xinerama-dev (1.2.1-1) ...
Setting up libxinerama-dev (2:1.1.1-1ubuntu1) ...
Setting up xorg-sgml-doctools (1:1.6-1) ...
Setting up libxi-dev (2:1.4.1-1ubuntu2) ...
Setting up x11proto-randr-dev (1.4.0+git20101207.0d32bb07-0ubuntu1) ...
Setting up libxrandr-dev (2:1.3.1-1ubuntu1) ...
Setting up x11proto-fixes-dev (1:4.1.2-1) ...
Setting up libxfixes-dev (1:4.0.5-1ubuntu1) ...
Setting up libxcursor-dev (1:1.1.11-1ubuntu1) ...
Setting up x11proto-composite-dev (1:0.4.2-1) ...
Setting up libxcomposite-dev (1:0.4.3-1ubuntu1) ...
Setting up x11proto-damage-dev (1:1.2.1-1) ...
Setting up libxdamage-dev (1:1.1.3-1ubuntu1) ...
Setting up libxml2-utils (2.7.8.dfsg-2) ...
Setting up libgtk2.0-dev (2.24.4-0ubuntu1) ...
Setting up libgail-dev (2.24.4-0ubuntu1) ...
Setting up libglade2-0 (1:2.6.4-1build1) ...
Setting up libgnomecanvas2-common (2.30.3-0ubuntu1) ...
Setting up libgnomecanvas2-0 (2.30.3-0ubuntu1) ...
Setting up libgnomecanvas2-dev (2.30.3-0ubuntu1) ...
Setting up libgoocanvas-common (0.15-1) ...
Setting up libgoocanvas3 (0.15-1) ...
Setting up libgoocanvas-dev (0.15-1) ...
Setting up libgsl0ldbl (1.14+dfsg-1) ...
Setting up libgsl0-dev (1.14+dfsg-1) ...
Setting up libxmu6 (2:1.1.0-1) ...
Setting up libgtkglext1 (1.2.0-1.1ubuntu1) ...
Setting up libxmu-dev (2:1.1.0-1) ...
Setting up libgtkglext1-dev (1.2.0-1.1ubuntu1) ...
Setting up libssl-dev (0.9.8o-5ubuntu1) ...
Setting up libssm0 (1.1-0ubuntu1) ...
Setting up libssm-dev (1.1-0ubuntu1) ...
Setting up libtool (2.2.6b-2ubuntu3) ...
Setting up python2.7-dev (2.7.1-5ubuntu2) ...
Setting up python-dev (2.7.1-0ubuntu5) ...
Setting up libffi-dev (3.0.9-3ubuntu1) ...
Setting up python-gobject-dev (2.28.3-1) ...
Setting up python-gtk2 (2.22.0-0ubuntu1) ...
Setting up python-gtk2-dev (2.22.0-0ubuntu1) ...
Setting up quilt (0.48-7) ...
Setting up sharutils (1:4.9-1) ...
Setting up swig (1.3.40-3ubuntu1) ...
Setting up texinfo (4.13a.dfsg.1-6ubuntu3) ...
Setting up ghostscript (9.01~dfsg-1ubuntu5) ...
Setting up gs-cjk-resource (1.20100103-2) ...
Setting up libgs9 (9.01~dfsg-1ubuntu5) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Processing triggers for python-support ...
Checking correctness of source dependencies...
Toolchain package versions: libc6-dev_2.13-0ubuntu13 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu6 gcc-4.5_4.5.2-8ubuntu3 g++-4.5_4.5.2-8ubuntu3 binutils_2.21.0.20110327-2ubuntu2 libstdc++6-4.5-dev_4.5.2-8ubuntu3 libstdc++6_4.5.2-8ubuntu3
------------------------------------------------------------------------------
gpgv: Signature made Thu Apr 14 10:38:20 2011 UTC using DSA key ID 404825E7
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc
dpkg-source: info: extracting coot in coot-0.7pre1+svn3470
dpkg-source: info: unpacking coot_0.7pre1+svn3470.orig.tar.gz
dpkg-source: info: applying coot_0.7pre1+svn3470-0ubuntu1~natty1.diff.gz
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions
dpkg-buildpackage: source package coot
dpkg-buildpackage: source version 0.7pre1+svn3470-0ubuntu1~natty1
 dpkg-source --before-build coot-0.7pre1+svn3470
dpkg-buildpackage: host architecture i386
 /usr/bin/fakeroot debian/rules clean
QUILT_PATCHES=debian/patches \
		quilt --quiltrc /dev/null pop -a -R || test $? = 2
No patch removed
rm -rf .pc debian/stamp-patched
dh_testdir
dh_testroot
rm -f build-arch-stamp build-indep-stamp autoconf-stamp
# Clean up after the build process.
[ ! -f Makefile ] || /usr/bin/make distclean
dh_clean
	rm -f debian/coot.substvars
	rm -f debian/coot.*.debhelper
	rm -f debian/coot.debhelper.log
	rm -rf debian/coot/
	rm -f debian/coot-data.substvars
	rm -f debian/coot-data.*.debhelper
	rm -f debian/coot-data.debhelper.log
	rm -rf debian/coot-data/
	rm -f debian/coot-docs.substvars
	rm -f debian/coot-docs.*.debhelper
	rm -f debian/coot-docs.debhelper.log
	rm -rf debian/coot-docs/
	rm -f debian/files
	find .  \( \( -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} \; \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
	rm -f *-stamp
 debian/rules build
QUILT_PATCHES=debian/patches \
		quilt --quiltrc /dev/null push -a || test $? = 2
Applying patch lbg_makefile.am.diff
patching file lbg/Makefile.am

Applying patch application_path.diff
patching file python/coot_utils.py

Applying patch command-line.diff
patching file src/command-line.hh

Applying patch configure-fftw-prefix.diff
patching file configure.in
patching file macros/clipper.m4

Applying patch coot-history.diff
patching file src/globjects.cc

Applying patch splash-screen.diff
patching file src/gtk2-interface.c

Applying patch ac_init.diff
patching file configure.in

Applying patch convenience-libraries.diff
patching file analysis/Makefile.am
patching file angles/Makefile.am
patching file build/Makefile.am
patching file ccp4mg-utils/Makefile.am
patching file compat/Makefile.am
patching file coords/Makefile.am
patching file coot-surface/Makefile.am
patching file coot-utils/Makefile.am
patching file cootaneer/Makefile.am
patching file db-main/Makefile.am
patching file density-contour/Makefile.am
patching file geometry/Makefile.am
patching file high-res/Makefile.am
patching file ideal/Makefile.am
patching file lbg/Makefile.am
patching file lidia-core/Makefile.am
patching file ligand/Makefile.am
patching file mini-mol/Makefile.am
patching file skeleton/Makefile.am
patching file surface/Makefile.am
patching file utils/Makefile.am
patching file tw/Makefile.am
patching file protein_db/Makefile.am

Applying patch doc_makefile.am.diff
patching file doc/Makefile.am

Applying patch refman.diff
patching file doc/coot-reference-manual.texi

Applying patch userman.diff
patching file doc/coot-user-manual.texi

Applying patch coot-plain-2.eps.diff
patching file doc/coot-plain-2.eps

Applying patch check_for_updates.diff
patching file python/coot_load_modules.py
patching file python/extensions.py

Applying patch optparse.diff
patching file src/cmdline.ggo
patching file src/Makefile.am
Hunk #2 succeeded at 285 (offset 1 line).
Hunk #3 succeeded at 512 (offset 2 lines).
patching file src/command-line.cc
patching file src/cmdline.c
patching file src/cmdline.h

Now at patch optparse.diff
touch debian/stamp-patched
autoreconf --install --force
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./config.guess'
libtoolize: copying file `./config.sub'
libtoolize: copying file `./install-sh'
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `macros'.
libtoolize: copying file `macros/libtool.m4'
libtoolize: copying file `macros/ltoptions.m4'
libtoolize: copying file `macros/ltsugar.m4'
libtoolize: copying file `macros/ltversion.m4'
libtoolize: copying file `macros/lt~obsolete.m4'
doc/Makefile.am:2: installing `doc/mdate-sh'
touch autoconf-stamp
dh_testdir
./configure --prefix=/usr \
		--with-gtk2 \
		--with-mmdb-prefix=/usr \
		--with-ssmlib-prefix=/usr \
		--with-fftw-library-prefix=s \
		--with-gpp4 \
		--with-python \
		--with-pygtk=/usr
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking sys/stdtypes.h usability... no
checking sys/stdtypes.h presence... no
checking for sys/stdtypes.h... no
checking for gcc option to support OpenMP... -fopenmp
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GLIB... yes
checking if this is MINGW on Windows... no
checking for CCP4... yes
checking for MMDB... yes
checking for SSMLib... /usr
checking for Clipper... yes
Not using guile
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 1.3... yes
checking for GTK... yes
checking for GNOME_CANVAS... yes
checking for pkg-config... /usr/bin/pkg-config
checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0)
checking for GLUT... yes
checking for Python... checking Python.h usability... yes
checking Python.h presence... yes
checking for Python.h... yes
Cool, using Python
checking for PYGTK... yes
Good we have pygtk
checking for guile-gtk... 
checking libglade... no
checking for Goocanvas... yes
Not using database
checking for curl >= 7.9.7... FAILED
configure: WARNING: curl-config was not found
checking build type... Linux-i386-ubuntu-natty-python-gtk2
configure: creating ./config.status
config.status: creating Makefile
config.status: creating macros/Makefile
config.status: creating scheme/Makefile
config.status: creating python/Makefile
config.status: creating compat/Makefile
config.status: creating utils/Makefile
config.status: creating coot-utils/Makefile
config.status: creating protein_db/Makefile
config.status: creating ccp4mg-utils/Makefile
config.status: creating coords/Makefile
config.status: creating db-main/Makefile
config.status: creating density-contour/Makefile
config.status: creating surface/Makefile
config.status: creating coot-surface/Makefile
config.status: creating angles/Makefile
config.status: creating mini-mol/Makefile
config.status: creating skeleton/Makefile
config.status: creating ligand/Makefile
config.status: creating geometry/Makefile
config.status: creating ideal/Makefile
config.status: creating build/Makefile
config.status: creating analysis/Makefile
config.status: creating high-res/Makefile
config.status: creating tw/Makefile
config.status: creating cootaneer/Makefile
config.status: creating greg-tests/Makefile
config.status: creating python-tests/Makefile
config.status: creating lidia-core/Makefile
config.status: creating lbg/Makefile
config.status: creating doc/Makefile
config.status: creating src/Makefile
config.status: creating src/coot
config.status: creating python/coot_load_modules.py
config.status: creating data/Makefile
config.status: creating rama-data/Makefile
config.status: creating auxil/Makefile
config.status: creating auxil/catcheck/Makefile
config.status: creating auxil/rama/Makefile
config.status: creating auxil/sec-str/Makefile
config.status: creating auxil/strand-analysis/Makefile
config.status: creating auxil/vectors/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
g++ -o get-svn-revision -I./src debian/get-svn-revision.cpp
dh_testdir
/usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT"
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
Making all in auxil
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making all in catcheck
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
Making all in rama
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
Making all in sec-str
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
Making all in strand-analysis
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
Making all in vectors
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making all in scheme
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
Making all in python
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
Making all in macros
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros'
Making all in compat
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat'
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I.     -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c  -fPIC -DPIC -o .libs/getopt.o
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&1
mv -f .deps/getopt.Tpo .deps/getopt.Plo
/bin/bash ../libtool --tag=CC   --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I.     -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c  -fPIC -DPIC -o .libs/getopt1.o
libtool: compile:  gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o >/dev/null 2>&1
mv -f .deps/getopt1.Tpo .deps/getopt1.Plo
/bin/bash ../libtool --tag=CC   --mode=link gcc  -Wall -g -O2 -D_REENTRANT  -Wl,-Bsymbolic-functions -o libcoot-compat.la  getopt.lo getopt1.lo  
libtool: link: ar cru .libs/libcoot-compat.a .libs/getopt.o .libs/getopt1.o 
libtool: link: ranlib .libs/libcoot-compat.a
libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat'
Making all in utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat		    -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc  -fPIC -DPIC -o .libs/coot-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o >/dev/null 2>&1
mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat		    -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc  -fPIC -DPIC -o .libs/coot-fasta.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o >/dev/null 2>&1
mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat		    -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc  -fPIC -DPIC -o .libs/atomic-numbers.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -o atomic-numbers.o >/dev/null 2>&1
mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat		    -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c -o gdk-keysyms.lo gdk-keysyms.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc  -fPIC -DPIC -o .libs/gdk-keysyms.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -o gdk-keysyms.o >/dev/null 2>&1
mv -f .deps/gdk-keysyms.Tpo .deps/gdk-keysyms.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-utils.la  coot-utils.lo coot-fasta.lo atomic-numbers.lo gdk-keysyms.lo  
libtool: link: ar cru .libs/libcoot-utils.a .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/gdk-keysyms.o 
libtool: link: ranlib .libs/libcoot-utils.a
libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils'
Making all in protein_db
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4    -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c -o protein_db.lo protein_db.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp  -fPIC -DPIC -o .libs/protein_db.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -o protein_db.o >/dev/null 2>&1
mv -f .deps/protein_db.Tpo .deps/protein_db.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4    -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c -o protein_db_utils.lo protein_db_utils.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp  -fPIC -DPIC -o .libs/protein_db_utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -o protein_db_utils.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4    -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c -o rna_db.lo rna_db.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp  -fPIC -DPIC -o .libs/rna_db.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp -o rna_db.o >/dev/null 2>&1
mv -f .deps/rna_db.Tpo .deps/rna_db.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-protein-db.la  protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: ar cru .libs/libcoot-protein-db.a .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o 
libtool: link: ranlib .libs/libcoot-protein-db.a
libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
Making all in geometry
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c -o protein-geometry.lo protein-geometry.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c protein-geometry.cc  -fPIC -DPIC -o .libs/protein-geometry.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c protein-geometry.cc -o protein-geometry.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c -o protein-geometry-mmdb.lo protein-geometry-mmdb.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc  -fPIC -DPIC -o .libs/protein-geometry-mmdb.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -o protein-geometry-mmdb.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT read-sbase.lo -MD -MP -MF .deps/read-sbase.Tpo -c -o read-sbase.lo read-sbase.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT read-sbase.lo -MD -MP -MF .deps/read-sbase.Tpo -c read-sbase.cc  -fPIC -DPIC -o .libs/read-sbase.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT read-sbase.lo -MD -MP -MF .deps/read-sbase.Tpo -c read-sbase.cc -o read-sbase.o >/dev/null 2>&1
mv -f .deps/read-sbase.Tpo .deps/read-sbase.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c -o energy-lib.lo energy-lib.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c energy-lib.cc  -fPIC -DPIC -o .libs/energy-lib.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c energy-lib.cc -o energy-lib.o >/dev/null 2>&1
mv -f .deps/energy-lib.Tpo .deps/energy-lib.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c -o lbg-graph.lo lbg-graph.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc  -fPIC -DPIC -o .libs/lbg-graph.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc -o lbg-graph.o >/dev/null 2>&1
mv -f .deps/lbg-graph.Tpo .deps/lbg-graph.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-geometry.la  protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo lbg-graph.lo ../utils/libcoot-utils.la -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread 
libtool: link: (cd .libs/libcoot-geometry.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/geometry/../utils/.libs/libcoot-utils.a")
libtool: link: ar cru .libs/libcoot-geometry.a .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/lbg-graph.o   .libs/libcoot-geometry.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-geometry.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-utils.o 
libtool: link: ranlib .libs/libcoot-geometry.a
libtool: link: rm -fr .libs/libcoot-geometry.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT test-geometry.o -MD -MP -MF .deps/test-geometry.Tpo -c -o test-geometry.o test-geometry.cc
mv -f .deps/test-geometry.Tpo .deps/test-geometry.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o  ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT test-read-components.o -MD -MP -MF .deps/test-read-components.Tpo -c -o test-read-components.o test-read-components.cc
mv -f .deps/test-read-components.Tpo .deps/test-read-components.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o  ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
Making all in mini-mol
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc  -fPIC -DPIC -o .libs/mini-mol.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o >/dev/null 2>&1
mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc  -fPIC -DPIC -o .libs/mini-mol-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o >/dev/null 2>&1
mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c -o atom-quads.lo atom-quads.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc  -fPIC -DPIC -o .libs/atom-quads.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -o atom-quads.o >/dev/null 2>&1
mv -f .deps/atom-quads.Tpo .deps/atom-quads.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-mini-mol.la  mini-mol.lo mini-mol-utils.lo atom-quads.lo -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread  
libtool: link: ar cru .libs/libcoot-mini-mol.a .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o 
libtool: link: ranlib .libs/libcoot-mini-mol.a
libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT testminimol.o -MD -MP -MF .deps/testminimol.Tpo -c -o testminimol.o testminimol.cc
mv -f .deps/testminimol.Tpo .deps/testminimol.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o testminimol testminimol.o libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o testminimol testminimol.o  ./.libs/libcoot-mini-mol.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
Making all in coot-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc  -fPIC -DPIC -o .libs/coot-coord-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -o coot-coord-utils.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c coot-coord-utils-nucleotides.cc  -fPIC -DPIC -o .libs/coot-coord-utils-nucleotides.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c coot-coord-utils-nucleotides.cc -o coot-coord-utils-nucleotides.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c -o coot-rama.lo coot-rama.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c coot-rama.cc  -fPIC -DPIC -o .libs/coot-rama.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c coot-rama.cc -o coot-rama.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c -o coot-h-bonds.lo coot-h-bonds.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c coot-h-bonds.cc  -fPIC -DPIC -o .libs/coot-h-bonds.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c coot-h-bonds.cc -o coot-h-bonds.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-coord-utils.la  coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-coord-utils.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-coord-utils.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt1-atomic-numbers.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt2-gdk-keysyms.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-utils.lax/lt3-coot-fasta.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-utils.lax/lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt4-coot-utils.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt4-coot-utils.o
libtool: link: ar cru .libs/libcoot-coord-utils.a .libs/coot-coord-utils.o .libs/coot-coord-utils-nucleotides.o .libs/coot-rama.o .libs/coot-h-bonds.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-coord-utils.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt1-atomic-numbers.o .libs/libcoot-coord-utils.lax/lt2-gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt3-coot-fasta.o .libs/libcoot-coord-utils.lax/lt4-coot-utils.o
libtool: link: ranlib .libs/libcoot-coord-utils.a
libtool: link: rm -fr .libs/libcoot-coord-utils.lax .libs/libcoot-coord-utils.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" )
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c -o coot-shelx-ins.lo coot-shelx-ins.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c coot-shelx-ins.cc  -fPIC -DPIC -o .libs/coot-shelx-ins.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c coot-shelx-ins.cc -o coot-shelx-ins.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-shelx.la  coot-shelx-ins.lo libcoot-coord-utils.la ../utils/libcoot-utils.la 
libtool: link: (cd .libs/libcoot-shelx.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-shelx.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-shelx.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-shelx.lax/lt2-atomic-numbers.o || cp .libs/libcoot-shelx.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-shelx.lax/lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-shelx.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-shelx.lax/lt3-gdk-keysyms.o || cp .libs/libcoot-shelx.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-shelx.lax/lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-shelx.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-shelx.lax/lt4-coot-fasta.o || cp .libs/libcoot-shelx.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-shelx.lax/lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-shelx.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-shelx.lax/lt5-coot-utils.o || cp .libs/libcoot-shelx.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-shelx.lax/lt5-coot-utils.o
libtool: link: ar cru .libs/libcoot-shelx.a .libs/coot-shelx-ins.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-shelx.lax/lt2-atomic-numbers.o .libs/libcoot-shelx.lax/lt3-gdk-keysyms.o .libs/libcoot-shelx.lax/lt4-coot-fasta.o .libs/libcoot-shelx.lax/lt5-coot-utils.o
libtool: link: ranlib .libs/libcoot-shelx.a
libtool: link: rm -fr .libs/libcoot-shelx.lax .libs/libcoot-shelx.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-shelx.la" && ln -s "../libcoot-shelx.la" "libcoot-shelx.la" )
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c -o coot-coord-extras.lo coot-coord-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c coot-coord-extras.cc  -fPIC -DPIC -o .libs/coot-coord-extras.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c coot-coord-extras.cc -o coot-coord-extras.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c -o coot-coord-lsq.lo coot-coord-lsq.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c coot-coord-lsq.cc  -fPIC -DPIC -o .libs/coot-coord-lsq.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c coot-coord-lsq.cc -o coot-coord-lsq.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c -o coot-tree-extras.lo coot-tree-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c coot-tree-extras.cc  -fPIC -DPIC -o .libs/coot-tree-extras.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c coot-tree-extras.cc -o coot-tree-extras.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c -o water-coordination.lo water-coordination.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c water-coordination.cc  -fPIC -DPIC -o .libs/water-coordination.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c water-coordination.cc -o water-coordination.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c -o lsq-improve.lo lsq-improve.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c lsq-improve.cc  -fPIC -DPIC -o .libs/lsq-improve.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c lsq-improve.cc -o lsq-improve.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-coord-extras.la  coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la 
libtool: link: (cd .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-coord-extras.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../mini-mol/.libs/libcoot-mini-mol.a")
libtool: link: (cd .libs/libcoot-coord-extras.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-coord-extras.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-extras.lax/lt2-atomic-numbers.o || cp .libs/libcoot-coord-extras.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-extras.lax/lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-coord-extras.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-extras.lax/lt3-gdk-keysyms.o || cp .libs/libcoot-coord-extras.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-extras.lax/lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coord-extras.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-extras.lax/lt4-coot-fasta.o || cp .libs/libcoot-coord-extras.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-extras.lax/lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-coord-extras.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-extras.lax/lt5-coot-utils.o || cp .libs/libcoot-coord-extras.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-extras.lax/lt5-coot-utils.o
libtool: link: ar cru .libs/libcoot-coord-extras.a .libs/coot-coord-extras.o .libs/coot-coord-lsq.o .libs/coot-tree-extras.o .libs/water-coordination.o .libs/lsq-improve.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coord-extras.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coord-extras.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-coord-extras.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-coord-extras.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-coord-extras.lax/lt2-atomic-numbers.o .libs/libcoot-coord-extras.lax/lt3-gdk-keysyms.o .libs/libcoot-coord-extras.lax/lt4-coot-fasta.o .libs/libcoot-coord-extras.lax/lt5-coot-utils.o
libtool: link: ranlib .libs/libcoot-coord-extras.a
libtool: link: rm -fr .libs/libcoot-coord-extras.lax .libs/libcoot-coord-extras.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" )
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c coot-map-utils.cc  -fPIC -DPIC -o .libs/coot-map-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c coot-map-utils.cc -o coot-map-utils.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c -o peak-search.lo peak-search.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c peak-search.cc  -fPIC -DPIC -o .libs/peak-search.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c peak-search.cc -o peak-search.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT peak-search-from-list.lo -MD -MP -MF .deps/peak-search-from-list.Tpo -c -o peak-search-from-list.lo peak-search-from-list.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT peak-search-from-list.lo -MD -MP -MF .deps/peak-search-from-list.Tpo -c peak-search-from-list.cc  -fPIC -DPIC -o .libs/peak-search-from-list.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c trim.cc  -fPIC -DPIC -o .libs/trim.o
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT xmap-stats.lo -MD -MP -MF .deps/xmap-stats.Tpo -c xmap-stats.cc -o xmap-stats.o >/dev/null 2>&1
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libtool: link: (cd .libs/libcoot-map-utils.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-coord-utils.a")
libtool: link: ar cru .libs/libcoot-map-utils.a .libs/coot-map-utils.o .libs/peak-search.o .libs/peak-search-from-list.o .libs/trim.o .libs/xmap-stats.o   .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-utils.lax/libcoot-coord-utils.a/coot-h-bonds.o 
libtool: link: ranlib .libs/libcoot-map-utils.a
libtool: link: rm -fr .libs/libcoot-map-utils.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" )
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc  -fPIC -DPIC -o .libs/coot-map-heavy.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -o coot-map-heavy.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc  -fPIC -DPIC -o .libs/coot-fffear.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -o coot-fffear.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-map-heavy.la  coot-map-heavy.lo coot-fffear.lo ../mini-mol/libcoot-mini-mol.la libcoot-map-utils.la libcoot-coord-utils.la ../utils/libcoot-utils.la -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../mini-mol/.libs/libcoot-mini-mol.a")
libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-map-utils.a")
libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt1-protein-geometry-mmdb.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt2-coot-coord-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt2-coot-coord-utils.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-map-heavy.lax/lt3-lt4-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-map-heavy.lax/lt3-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/lt4-lbg-graph.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/lt4-lbg-graph.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt5-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt5-atomic-numbers.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/lt6-lt3-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/lt6-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-map-heavy.lax/lt7-coot-rama.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-map-heavy.lax/lt7-coot-rama.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt8-lt2-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt8-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt9-coot-coord-utils-nucleotides.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt9-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/lt10-protein-geometry.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/lt10-protein-geometry.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt11-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt11-gdk-keysyms.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt12-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt12-coot-fasta.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt13-lt1-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt13-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/lt14-energy-lib.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/lt14-energy-lib.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt15-read-sbase.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt15-read-sbase.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt16-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt16-coot-utils.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt17-coot-h-bonds.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt17-coot-h-bonds.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt18-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt18-atomic-numbers.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt20-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt20-coot-fasta.o
libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt21-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt21-coot-utils.o
libtool: link: ar cru .libs/libcoot-map-heavy.a .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/xmap-stats.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt4-coot-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/peak-search.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt2-gdk-keysyms.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/trim.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/peak-search-from-list.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-map-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt1-protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt2-coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt3-lt4-coot-utils.o .libs/libcoot-map-heavy.lax/lt4-lbg-graph.o .libs/libcoot-map-heavy.lax/lt5-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt6-lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/lt7-coot-rama.o .libs/libcoot-map-heavy.lax/lt8-lt2-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt9-coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt10-protein-geometry.o .libs/libcoot-map-heavy.lax/lt11-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt12-coot-fasta.o .libs/libcoot-map-heavy.lax/lt13-lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt14-energy-lib.o .libs/libcoot-map-heavy.lax/lt15-read-sbase.o .libs/libcoot-map-heavy.lax/lt16-coot-utils.o .libs/libcoot-map-heavy.lax/lt17-coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt18-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt20-coot-fasta.o .libs/libcoot-map-heavy.lax/lt21-coot-utils.o
libtool: link: ranlib .libs/libcoot-map-heavy.a
libtool: link: rm -fr .libs/libcoot-map-heavy.lax .libs/libcoot-map-heavy.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-h-bonds.o -MD -MP -MF .deps/test-h-bonds.Tpo -c -o test-h-bonds.o test-h-bonds.cc
mv -f .deps/test-h-bonds.Tpo .deps/test-h-bonds.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o test-h-bonds test-h-bonds.o ../geometry/libcoot-geometry.la ./libcoot-coord-utils.la  
libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-h-bonds test-h-bonds.o  ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ./.libs/libcoot-coord-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-shelx-reader.o -MD -MP -MF .deps/test-shelx-reader.Tpo -c -o test-shelx-reader.o test-shelx-reader.cc
mv -f .deps/test-shelx-reader.Tpo .deps/test-shelx-reader.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la 
libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o  ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include  -DUSE_PYTHON   -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-utils.o -MD -MP -MF .deps/test-utils.Tpo -c -o test-utils.o test-utils.cc
mv -f .deps/test-utils.Tpo .deps/test-utils.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL  -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-extras.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la 
libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testcootutils test-utils.o  ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-extras.a ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
Making all in surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c -o CXXSphereElement.lo CXXSphereElement.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp  -fPIC -DPIC -o .libs/CXXSphereElement.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp -o CXXSphereElement.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c -o CXXChargeTable.lo CXXChargeTable.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp  -fPIC -DPIC -o .libs/CXXChargeTable.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp -o CXXChargeTable.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c -o CXXSphereNode.lo CXXSphereNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp  -fPIC -DPIC -o .libs/CXXSphereNode.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -o CXXSphereNode.o >/dev/null 2>&1
mv -f .deps/CXXSphereNode.Tpo .deps/CXXSphereNode.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c -o CXXCircle.lo CXXCircle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c CXXCircle.cpp  -fPIC -DPIC -o .libs/CXXCircle.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c CXXCircle.cpp -o CXXCircle.o >/dev/null 2>&1
mv -f .deps/CXXCircle.Tpo .deps/CXXCircle.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c -o CXXSphereTriangle.lo CXXSphereTriangle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp  -fPIC -DPIC -o .libs/CXXSphereTriangle.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp -o CXXSphereTriangle.o >/dev/null 2>&1
mv -f .deps/CXXSphereTriangle.Tpo .deps/CXXSphereTriangle.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c -o CXXCircleNode.lo CXXCircleNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp  -fPIC -DPIC -o .libs/CXXCircleNode.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -o CXXCircleNode.o >/dev/null 2>&1
mv -f .deps/CXXCircleNode.Tpo .deps/CXXCircleNode.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c -o CXXSphereTriangleEdge.lo CXXSphereTriangleEdge.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp  -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -o CXXSphereTriangleEdge.o >/dev/null 2>&1
mv -f .deps/CXXSphereTriangleEdge.Tpo .deps/CXXSphereTriangleEdge.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c -o CXXCoord.lo CXXCoord.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp  -fPIC -DPIC -o .libs/CXXCoord.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp -o CXXCoord.o >/dev/null 2>&1
mv -f .deps/CXXCoord.Tpo .deps/CXXCoord.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c -o CXXSurface.lo CXXSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c CXXSurface.cpp  -fPIC -DPIC -o .libs/CXXSurface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c CXXSurface.cpp -o CXXSurface.o >/dev/null 2>&1
mv -f .deps/CXXSurface.Tpo .deps/CXXSurface.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c -o CXXCreator.lo CXXCreator.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp  -fPIC -DPIC -o .libs/CXXCreator.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp -o CXXCreator.o >/dev/null 2>&1
mv -f .deps/CXXCreator.Tpo .deps/CXXCreator.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c -o CXXSurfaceVertex.lo CXXSurfaceVertex.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c CXXSurfaceVertex.cpp  -fPIC -DPIC -o .libs/CXXSurfaceVertex.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c CXXSurfaceVertex.cpp -o CXXSurfaceVertex.o >/dev/null 2>&1
mv -f .deps/CXXSurfaceVertex.Tpo .deps/CXXSurfaceVertex.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c -o CXXException.lo CXXException.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c CXXException.cpp  -fPIC -DPIC -o .libs/CXXException.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c CXXException.cpp -o CXXException.o >/dev/null 2>&1
mv -f .deps/CXXException.Tpo .deps/CXXException.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c -o CXXTorusElement.lo CXXTorusElement.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c CXXTorusElement.cpp  -fPIC -DPIC -o .libs/CXXTorusElement.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c CXXTorusElement.cpp -o CXXTorusElement.o >/dev/null 2>&1
mv -f .deps/CXXTorusElement.Tpo .deps/CXXTorusElement.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c CXXFFTSolventMap.cpp  -fPIC -DPIC -o .libs/CXXFFTSolventMap.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c CXXFFTSolventMap.cpp -o CXXFFTSolventMap.o >/dev/null 2>&1
mv -f .deps/CXXFFTSolventMap.Tpo .deps/CXXFFTSolventMap.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c -o CXXTorusNode.lo CXXTorusNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c CXXTorusNode.cpp  -fPIC -DPIC -o .libs/CXXTorusNode.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c CXXTorusNode.cpp -o CXXTorusNode.o >/dev/null 2>&1
mv -f .deps/CXXTorusNode.Tpo .deps/CXXTorusNode.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c -o CXXFortranFile.lo CXXFortranFile.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c CXXFortranFile.cpp  -fPIC -DPIC -o .libs/CXXFortranFile.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c CXXFortranFile.cpp -o CXXFortranFile.o >/dev/null 2>&1
mv -f .deps/CXXFortranFile.Tpo .deps/CXXFortranFile.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c -o CXXNewHood.lo CXXNewHood.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c CXXNewHood.cpp  -fPIC -DPIC -o .libs/CXXNewHood.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c CXXNewHood.cpp -o CXXNewHood.o >/dev/null 2>&1
mv -f .deps/CXXNewHood.Tpo .deps/CXXNewHood.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c -o CXXTriangle.lo CXXTriangle.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c CXXTriangle.cpp  -fPIC -DPIC -o .libs/CXXTriangle.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c CXXTriangle.cpp -o CXXTriangle.o >/dev/null 2>&1
mv -f .deps/CXXTriangle.Tpo .deps/CXXTriangle.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c -o CXXNode.lo CXXNode.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c CXXNode.cpp  -fPIC -DPIC -o .libs/CXXNode.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c CXXNode.cpp -o CXXNode.o >/dev/null 2>&1
mv -f .deps/CXXNode.Tpo .deps/CXXNode.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c -o CXXQADSurface.lo CXXQADSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp  -fPIC -DPIC -o .libs/CXXQADSurface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -o CXXQADSurface.o >/dev/null 2>&1
mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c -o CXXBall.lo CXXBall.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c CXXBall.cpp  -fPIC -DPIC -o .libs/CXXBall.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c CXXBall.cpp -o CXXBall.o >/dev/null 2>&1
mv -f .deps/CXXBall.Tpo .deps/CXXBall.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo CXXQADSurfaceStaticData.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp  -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -o CXXQADSurfaceStaticData.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c -o CXXSpace.lo CXXSpace.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp  -fPIC -DPIC -o .libs/CXXSpace.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4      -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c -o CXXUtils.lo CXXUtils.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp  -fPIC -DPIC -o .libs/CXXUtils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -o CXXUtils.o >/dev/null 2>&1
mv -f .deps/CXXUtils.Tpo .deps/CXXUtils.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o libccp4mg-surface.la  CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: ar cru .libs/libccp4mg-surface.a .libs/CXXSphereElement.o .libs/CXXChargeTable.o .libs/CXXSphereNode.o .libs/CXXCircle.o .libs/CXXSphereTriangle.o .libs/CXXCircleNode.o .libs/CXXSphereTriangleEdge.o .libs/CXXCoord.o .libs/CXXSurface.o .libs/CXXCreator.o .libs/CXXSurfaceVertex.o .libs/CXXException.o .libs/CXXTorusElement.o .libs/CXXFFTSolventMap.o .libs/CXXTorusNode.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXTriangle.o .libs/CXXNode.o .libs/CXXQADSurface.o .libs/CXXBall.o .libs/CXXQADSurfaceStaticData.o .libs/CXXSpace.o .libs/CXXUtils.o 
libtool: link: ranlib .libs/libccp4mg-surface.a
libtool: link: ( cd ".libs" && rm -f "libccp4mg-surface.la" && ln -s "../libccp4mg-surface.la" "libccp4mg-surface.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface'
Making all in coot-surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4        -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc  -fPIC -DPIC -o .libs/coot-surface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o >/dev/null 2>&1
mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4        -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc  -fPIC -DPIC -o .libs/rgbreps.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o >/dev/null 2>&1
mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-surface.la  coot-surface.lo rgbreps.lo ../surface/libccp4mg-surface.la -lglut  -lXmu -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm  
libtool: link: (cd .libs/libcoot-surface.lax/libccp4mg-surface.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-surface/../surface/.libs/libccp4mg-surface.a")
libtool: link: ar cru .libs/libcoot-surface.a .libs/coot-surface.o .libs/rgbreps.o   .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFortranFile.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurfaceStaticData.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXUtils.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFFTSolventMap.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCreator.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNewHood.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCoord.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSpace.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurfaceVertex.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangleEdge.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXChargeTable.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircleNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXBall.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXException.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNode.o 
libtool: link: ranlib .libs/libcoot-surface.a
libtool: link: rm -fr .libs/libcoot-surface.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
Making all in lidia-core
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c -o lbg-molfile.lo lbg-molfile.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc  -fPIC -DPIC -o .libs/lbg-molfile.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -o lbg-molfile.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c -o lig-build.lo lig-build.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc  -fPIC -DPIC -o .libs/lig-build.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -o lig-build.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-lidia-core.la  lbg-molfile.lo lig-build.lo  
libtool: link: ar cru .libs/libcoot-lidia-core.a .libs/lbg-molfile.o .libs/lig-build.o 
libtool: link: ranlib .libs/libcoot-lidia-core.a
libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
Making all in coords
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c -o Bond_lines.lo Bond_lines.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c Bond_lines.cc  -fPIC -DPIC -o .libs/Bond_lines.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c Bond_lines.cc -o Bond_lines.o >/dev/null 2>&1
mv -f .deps/Bond_lines.Tpo .deps/Bond_lines.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c -o Cartesian.lo Cartesian.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc  -fPIC -DPIC -o .libs/Cartesian.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -o Cartesian.o >/dev/null 2>&1
mv -f .deps/Cartesian.Tpo .deps/Cartesian.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c -o cos-sin.lo cos-sin.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc  -fPIC -DPIC -o .libs/cos-sin.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -o cos-sin.o >/dev/null 2>&1
mv -f .deps/cos-sin.Tpo .deps/cos-sin.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c -o mmdb-extras.lo mmdb-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c mmdb-extras.cc  -fPIC -DPIC -o .libs/mmdb-extras.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c mmdb-extras.cc -o mmdb-extras.o >/dev/null 2>&1
mv -f .deps/mmdb-extras.Tpo .deps/mmdb-extras.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.cc  -fPIC -DPIC -o .libs/utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.cc -o utils.o >/dev/null 2>&1
mv -f .deps/utils.Tpo .deps/utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c -o mmdb.lo mmdb.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c mmdb.cc  -fPIC -DPIC -o .libs/mmdb.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c mmdb.cc -o mmdb.o >/dev/null 2>&1
mv -f .deps/mmdb.Tpo .deps/mmdb.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c -o mmdb-crystal.lo mmdb-crystal.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc  -fPIC -DPIC -o .libs/mmdb-crystal.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc -o mmdb-crystal.o >/dev/null 2>&1
mv -f .deps/mmdb-crystal.Tpo .deps/mmdb-crystal.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c -o Bond_lines_ext.lo Bond_lines_ext.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc  -fPIC -DPIC -o .libs/Bond_lines_ext.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -o Bond_lines_ext.o >/dev/null 2>&1
mv -f .deps/Bond_lines_ext.Tpo .deps/Bond_lines_ext.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c -o coot-close.lo coot-close.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc  -fPIC -DPIC -o .libs/coot-close.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o >/dev/null 2>&1
mv -f .deps/coot-close.Tpo .deps/coot-close.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"'  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-coords.la  Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-lidia-core.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../lidia-core/.libs/libcoot-lidia-core.a")
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-shelx.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../coot-utils/.libs/libcoot-shelx.a")
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../coot-utils/.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../utils/.libs/libcoot-utils.a")
libtool: link: (cd .libs/libcoot-coords.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../mini-mol/.libs/libcoot-mini-mol.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt1-protein-geometry-mmdb.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt2-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt3-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o .libs/libcoot-coords.lax/lt4-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o .libs/libcoot-coords.lax/lt4-protein-geometry.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt5-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt5-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/coot-fasta.o .libs/libcoot-coords.lax/lt6-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/coot-fasta.o .libs/libcoot-coords.lax/lt6-coot-fasta.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt7-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt7-energy-lib.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt8-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt8-read-sbase.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt9-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt9-coot-utils.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt10-protein-geometry-mmdb.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt10-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt11-coot-coord-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt11-coot-coord-utils.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-coords.lax/lt12-lt4-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-coords.lax/lt12-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt13-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt13-lbg-graph.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt14-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt14-atomic-numbers.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/lt15-lt3-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/lt15-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt16-coot-rama.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt16-coot-rama.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-coords.lax/lt17-lt2-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-coords.lax/lt17-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt18-coot-coord-utils-nucleotides.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt18-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt19-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt19-protein-geometry.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt20-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt20-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt22-lt1-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt22-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt23-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt23-energy-lib.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt24-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt24-read-sbase.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt25-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt25-coot-utils.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt26-coot-h-bonds.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt26-coot-h-bonds.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt27-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt27-atomic-numbers.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt28-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt28-gdk-keysyms.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt29-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt29-coot-fasta.o
libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o
libtool: link: ar cru .libs/libcoot-coords.a .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lig-build.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lbg-molfile.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-coords.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-coords.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-coords.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-coords.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-coords.lax/lt1-protein-geometry-mmdb.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-coot-utils.o .libs/libcoot-coords.lax/lt2-lbg-graph.o .libs/libcoot-coords.lax/lt3-atomic-numbers.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-rama.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt5-coot-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-shelx-ins.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt4-protein-geometry.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-coot-fasta.o .libs/libcoot-coords.lax/lt5-gdk-keysyms.o .libs/libcoot-coords.lax/lt6-coot-fasta.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt7-energy-lib.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-atomic-numbers.o .libs/libcoot-coords.lax/lt8-read-sbase.o .libs/libcoot-coords.lax/lt9-coot-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt10-protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt11-coot-coord-utils.o .libs/libcoot-coords.lax/lt12-lt4-coot-utils.o .libs/libcoot-coords.lax/lt13-lbg-graph.o .libs/libcoot-coords.lax/lt14-atomic-numbers.o .libs/libcoot-coords.lax/lt15-lt3-coot-fasta.o .libs/libcoot-coords.lax/lt16-coot-rama.o .libs/libcoot-coords.lax/lt17-lt2-gdk-keysyms.o .libs/libcoot-coords.lax/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt19-protein-geometry.o .libs/libcoot-coords.lax/lt20-gdk-keysyms.o .libs/libcoot-coords.lax/lt21-coot-fasta.o .libs/libcoot-coords.lax/lt22-lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt23-energy-lib.o .libs/libcoot-coords.lax/lt24-read-sbase.o .libs/libcoot-coords.lax/lt25-coot-utils.o .libs/libcoot-coords.lax/lt26-coot-h-bonds.o .libs/libcoot-coords.lax/lt27-atomic-numbers.o .libs/libcoot-coords.lax/lt28-gdk-keysyms.o .libs/libcoot-coords.lax/lt29-coot-fasta.o .libs/libcoot-coords.lax/lt30-coot-utils.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol.o
libtool: link: ranlib .libs/libcoot-coords.a
libtool: link: rm -fr .libs/libcoot-coords.lax .libs/libcoot-coords.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords'
Making all in angles
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles'
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4     -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o >/dev/null 2>&1
mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo
/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4     -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o >/dev/null 2>&1
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/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4     -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc  -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o >/dev/null 2>&1
mv -f .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -g -O1 -g -O2  -Wl,-Bsymbolic-functions -o libcoot-AngleInfo.la  libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo  
libtool: link: ar cru .libs/libcoot-AngleInfo.a .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o 
libtool: link: ranlib .libs/libcoot-AngleInfo.a
libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles'
Making all in skeleton
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4       -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c -o dm-utils.lo dm-utils.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc  -fPIC -DPIC -o .libs/dm-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -o dm-utils.o >/dev/null 2>&1
mv -f .deps/dm-utils.Tpo .deps/dm-utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4       -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c -o graphical_skel.lo graphical_skel.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc  -fPIC -DPIC -o .libs/graphical_skel.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -o graphical_skel.o >/dev/null 2>&1
mv -f .deps/graphical_skel.Tpo .deps/graphical_skel.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4       -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c -o BuildCas.lo BuildCas.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc  -fPIC -DPIC -o .libs/BuildCas.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -o BuildCas.o >/dev/null 2>&1
mv -f .deps/BuildCas.Tpo .deps/BuildCas.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-skeleton.la  dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../angles/.libs/libcoot-AngleInfo.a")
libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../coords/.libs/libcoot-coords.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt1-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt2-lbg-graph.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt3-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt4-lt1-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt4-lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt5-protein-geometry.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt5-protein-geometry.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt6-gdk-keysyms.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt6-gdk-keysyms.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-lbg-graph.o .libs/libcoot-skeleton.lax/lt8-lt2-lbg-graph.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-lbg-graph.o .libs/libcoot-skeleton.lax/lt8-lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt9-energy-lib.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt9-energy-lib.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt10-read-sbase.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt10-read-sbase.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/lt11-lt3-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/lt11-lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt12-coot-utils.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt12-coot-utils.o
libtool: link: ar cru .libs/libcoot-skeleton.a .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt15-lt3-coot-fasta.o .libs/libcoot-skeleton.lax/lt1-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt14-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt20-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt10-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt27-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-coot-utils.o .libs/libcoot-skeleton.lax/lt2-lbg-graph.o .libs/libcoot-skeleton.lax/lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt29-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt6-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt25-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lig-build.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt24-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt8-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt12-lt4-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt9-coot-utils.o .libs/libcoot-skeleton.lax/lt4-lt1-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt17-lt2-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/lt5-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt26-coot-h-bonds.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-skeleton.lax/lt6-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt28-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt8-lt2-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt9-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt7-energy-lib.o .libs/libcoot-skeleton.lax/lt10-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt16-coot-rama.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-skeleton.lax/lt11-lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/lt12-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt13-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt19-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt11-coot-coord-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt22-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-close.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-h-bonds.o
libtool: link: ranlib .libs/libcoot-skeleton.a
libtool: link: rm -fr .libs/libcoot-skeleton.lax .libs/libcoot-skeleton.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
Making all in ccp4mg-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c -o geomutil.lo geomutil.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc  -fPIC -DPIC -o .libs/geomutil.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -o geomutil.o >/dev/null 2>&1
mv -f .deps/geomutil.Tpo .deps/geomutil.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c -o mgtree.lo mgtree.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc  -fPIC -DPIC -o .libs/mgtree.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -o mgtree.o >/dev/null 2>&1
mv -f .deps/mgtree.Tpo .deps/mgtree.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c -o cartesian.lo cartesian.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc  -fPIC -DPIC -o .libs/cartesian.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -o cartesian.o >/dev/null 2>&1
mv -f .deps/cartesian.Tpo .deps/cartesian.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc  -fPIC -DPIC -o .libs/matrix.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -o matrix.o >/dev/null 2>&1
mv -f .deps/matrix.Tpo .deps/matrix.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c -o quat.lo quat.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc  -fPIC -DPIC -o .libs/quat.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -o quat.o >/dev/null 2>&1
mv -f .deps/quat.Tpo .deps/quat.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG    -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo ppmutil.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc  -fPIC -DPIC -o .libs/ppmutil.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o >/dev/null 2>&1
mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libccp4mg-utils.la  geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng 
libtool: link: ar cru .libs/libccp4mg-utils.a .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o 
libtool: link: ranlib .libs/libccp4mg-utils.a
libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
Making all in density-contour
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4       -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo Vectors.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp  -fPIC -DPIC -o .libs/Vectors.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o >/dev/null 2>&1
mv -f .deps/Vectors.Tpo .deps/Vectors.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4       -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp  -fPIC -DPIC -o .libs/CIsoSurface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o >/dev/null 2>&1
mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4       -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo density-contour-triangles.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc  -fPIC -DPIC -o .libs/density-contour-triangles.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -o density-contour-triangles.o >/dev/null 2>&1
mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-isosurface.la  Vectors.lo CIsoSurface.lo density-contour-triangles.lo ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread 
libtool: link: (cd .libs/libcoot-isosurface.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/density-contour/../coords/.libs/libcoot-coords.a")
libtool: link: ar cru .libs/libcoot-isosurface.a .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o   .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt15-lt3-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt14-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt20-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt10-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt27-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt29-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt6-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt25-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lig-build.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt24-read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt8-read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt12-lt4-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt9-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt1-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt17-lt2-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt26-coot-h-bonds.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt28-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt7-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt16-coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt13-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt19-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt11-coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt22-lt1-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-close.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-h-bonds.o 
libtool: link: ranlib .libs/libcoot-isosurface.a
libtool: link: rm -fr .libs/libcoot-isosurface.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" )
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
Making all in db-main
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c -o db-main.lo db-main.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc  -fPIC -DPIC -o .libs/db-main.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -o db-main.o >/dev/null 2>&1
mv -f .deps/db-main.Tpo .deps/db-main.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c -o db-strands.lo db-strands.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc  -fPIC -DPIC -o .libs/db-strands.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o >/dev/null 2>&1
mv -f .deps/db-strands.Tpo .deps/db-strands.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-db-main.la  db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../mini-mol/.libs/libcoot-mini-mol.a")
libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../coot-utils/.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt3-gdk-keysyms.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt5-coot-utils.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt5-coot-utils.o
libtool: link: ar cru .libs/libcoot-db-main.a .libs/db-main.o .libs/db-strands.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o .libs/libcoot-db-main.lax/lt3-gdk-keysyms.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o .libs/libcoot-db-main.lax/lt5-coot-utils.o
libtool: link: ranlib .libs/libcoot-db-main.a
libtool: link: rm -fr .libs/libcoot-db-main.lax .libs/libcoot-db-main.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT testdbmain.o -MD -MP -MF .deps/testdbmain.Tpo -c -o testdbmain.o testdbmain.cc
mv -f .deps/testdbmain.Tpo .deps/testdbmain.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2  -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o  ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT train-pepflip.o -MD -MP -MF .deps/train-pepflip.Tpo -c -o train-pepflip.o train-pepflip.cc
mv -f .deps/train-pepflip.Tpo .deps/train-pepflip.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2  -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o  ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
Making all in ideal
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c -o simple-restraint.lo simple-restraint.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc  -fPIC -DPIC -o .libs/simple-restraint.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc -o simple-restraint.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints.lo -MD -MP -MF .deps/extra-restraints.Tpo -c extra-restraints.cc  -fPIC -DPIC -o .libs/extra-restraints.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints.lo -MD -MP -MF .deps/extra-restraints.Tpo -c extra-restraints.cc -o extra-restraints.o >/dev/null 2>&1
mv -f .deps/extra-restraints.Tpo .deps/extra-restraints.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c -o pepflip.lo pepflip.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc  -fPIC -DPIC -o .libs/pepflip.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc -o pepflip.o >/dev/null 2>&1
mv -f .deps/pepflip.Tpo .deps/pepflip.Plo
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc  -fPIC -DPIC -o .libs/regularize-minimol.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc -o regularize-minimol.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c -o lograma.lo lograma.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c lograma.cpp  -fPIC -DPIC -o .libs/lograma.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c lograma.cpp -o lograma.o >/dev/null 2>&1
mv -f .deps/lograma.Tpo .deps/lograma.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c -o extra-restraints-kk.lo extra-restraints-kk.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c extra-restraints-kk.cc  -fPIC -DPIC -o .libs/extra-restraints-kk.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c extra-restraints-kk.cc -o extra-restraints-kk.o >/dev/null 2>&1
mv -f .deps/extra-restraints-kk.Tpo .deps/extra-restraints-kk.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c -o simple-restraint-kk.lo simple-restraint-kk.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c simple-restraint-kk.cc  -fPIC -DPIC -o .libs/simple-restraint-kk.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c simple-restraint-kk.cc -o simple-restraint-kk.o >/dev/null 2>&1
mv -f .deps/simple-restraint-kk.Tpo .deps/simple-restraint-kk.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o libcoot-ideal.la  simple-restraint.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo extra-restraints-kk.lo simple-restraint-kk.lo ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread 
libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../coot-utils/.libs/libcoot-coord-extras.a")
libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../coot-utils/.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../utils/.libs/libcoot-utils.a")
libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../mini-mol/.libs/libcoot-mini-mol.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt1-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt2-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt3-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt5-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt5-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt6-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt6-coot-fasta.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt7-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt7-energy-lib.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt8-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt8-read-sbase.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt9-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt9-coot-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt10-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt10-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt11-coot-coord-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt11-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-ideal.lax/lt12-lt4-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-ideal.lax/lt12-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt13-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt13-lbg-graph.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt14-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt14-atomic-numbers.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt15-lt3-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt15-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt16-coot-rama.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt16-coot-rama.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ideal.lax/lt17-lt2-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ideal.lax/lt17-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt18-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt18-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt19-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt19-protein-geometry.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt20-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt20-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt22-lt1-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt22-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt23-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt23-energy-lib.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt24-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt24-read-sbase.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt25-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt25-coot-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt26-coot-h-bonds.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt26-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt27-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt27-atomic-numbers.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt28-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt28-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt29-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt29-coot-fasta.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt31-mini-mol-utils.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt31-mini-mol-utils.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt32-atom-quads.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt32-atom-quads.o
libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt33-mini-mol.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt33-mini-mol.o
libtool: link: ar cru .libs/libcoot-ideal.a .libs/simple-restraint.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ideal.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ideal.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ideal.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ideal.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ideal.lax/lt1-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-coot-utils.o .libs/libcoot-ideal.lax/lt2-lbg-graph.o .libs/libcoot-ideal.lax/lt3-atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt5-coot-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ideal.lax/lt5-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ideal.lax/lt6-coot-fasta.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt7-energy-lib.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ideal.lax/lt8-read-sbase.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ideal.lax/lt9-coot-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt10-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt11-coot-coord-utils.o .libs/libcoot-ideal.lax/lt12-lt4-coot-utils.o .libs/libcoot-ideal.lax/lt13-lbg-graph.o .libs/libcoot-ideal.lax/lt14-atomic-numbers.o .libs/libcoot-ideal.lax/lt15-lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt16-coot-rama.o .libs/libcoot-ideal.lax/lt17-lt2-gdk-keysyms.o .libs/libcoot-ideal.lax/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt19-protein-geometry.o .libs/libcoot-ideal.lax/lt20-gdk-keysyms.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o .libs/libcoot-ideal.lax/lt22-lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt23-energy-lib.o .libs/libcoot-ideal.lax/lt24-read-sbase.o .libs/libcoot-ideal.lax/lt25-coot-utils.o .libs/libcoot-ideal.lax/lt26-coot-h-bonds.o .libs/libcoot-ideal.lax/lt27-atomic-numbers.o .libs/libcoot-ideal.lax/lt28-gdk-keysyms.o .libs/libcoot-ideal.lax/lt29-coot-fasta.o .libs/libcoot-ideal.lax/lt30-coot-utils.o .libs/libcoot-ideal.lax/lt31-mini-mol-utils.o .libs/libcoot-ideal.lax/lt32-atom-quads.o .libs/libcoot-ideal.lax/lt33-mini-mol.o
libtool: link: ranlib .libs/libcoot-ideal.a
libtool: link: rm -fr .libs/libcoot-ideal.lax .libs/libcoot-ideal.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT with-geometry.o -MD -MP -MF .deps/with-geometry.Tpo -c -o with-geometry.o with-geometry.cc
mv -f .deps/with-geometry.Tpo .deps/with-geometry.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o with-geometry with-geometry.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o with-geometry with-geometry.o  -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT with-map.o -MD -MP -MF .deps/with-map.Tpo -c -o with-map.o with-map.cc
mv -f .deps/with-map.Tpo .deps/with-map.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o with-map with-map.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la ../mini-mol/libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o with-map with-map.o  -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a ../mini-mol/.libs/libcoot-mini-mol.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP   -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -MT logramatest.o -MD -MP -MF .deps/logramatest.Tpo -c -o logramatest.o logramatest.cpp
mv -f .deps/logramatest.Tpo .deps/logramatest.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/usr/include  -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL  -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o logramatest logramatest.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o logramatest logramatest.o  -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lgsl -lgslcblas -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
Making all in ligand
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c -o ligand.lo ligand.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c ligand.cc  -fPIC -DPIC -o .libs/ligand.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c ligand.cc -o ligand.o >/dev/null 2>&1
mv -f .deps/ligand.Tpo .deps/ligand.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c -o ligand-extras.lo ligand-extras.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc  -fPIC -DPIC -o .libs/ligand-extras.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc -o ligand-extras.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc  -fPIC -DPIC -o .libs/residue_by_phi_psi.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -o residue_by_phi_psi.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c -o wiggly-ligand.lo wiggly-ligand.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c wiggly-ligand.cc  -fPIC -DPIC -o .libs/wiggly-ligand.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c wiggly-ligand.cc -o wiggly-ligand.o >/dev/null 2>&1
mv -f .deps/wiggly-ligand.Tpo .deps/wiggly-ligand.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c -o monomer-utils.lo monomer-utils.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c monomer-utils.cc  -fPIC -DPIC -o .libs/monomer-utils.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c monomer-utils.cc -o monomer-utils.o >/dev/null 2>&1
mv -f .deps/monomer-utils.Tpo .deps/monomer-utils.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c -o dunbrack.lo dunbrack.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c dunbrack.cc  -fPIC -DPIC -o .libs/dunbrack.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c dunbrack.cc -o dunbrack.o >/dev/null 2>&1
mv -f .deps/dunbrack.Tpo .deps/dunbrack.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c -o chi-angles-autogen.lo chi-angles-autogen.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c chi-angles-autogen.cc  -fPIC -DPIC -o .libs/chi-angles-autogen.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c chi-angles-autogen.cc -o chi-angles-autogen.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c chi-angles.cc  -fPIC -DPIC -o .libs/chi-angles.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c chi-angles.cc -o chi-angles.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c helix-placement.cc  -fPIC -DPIC -o .libs/helix-placement.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c helix-placement.cc -o helix-placement.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT fast-ss-search.lo -MD -MP -MF .deps/fast-ss-search.Tpo -c fast-ss-search.cc  -fPIC -DPIC -o .libs/fast-ss-search.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT fast-ss-search.lo -MD -MP -MF .deps/fast-ss-search.Tpo -c fast-ss-search.cc -o fast-ss-search.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c rigid-body.cc  -fPIC -DPIC -o .libs/rigid-body.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c rigid-body.cc -o rigid-body.o >/dev/null 2>&1
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libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c ideal-rna.cc  -fPIC -DPIC -o .libs/ideal-rna.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c ideal-rna.cc -o ideal-rna.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT richardson-rotamers.lo -MD -MP -MF .deps/richardson-rotamers.Tpo -c -o richardson-rotamers.lo richardson-rotamers.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamers.lo -MD -MP -MF .deps/richardson-rotamers.Tpo -c richardson-rotamers.cc  -fPIC -DPIC -o .libs/richardson-rotamers.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamers.lo -MD -MP -MF .deps/richardson-rotamers.Tpo -c richardson-rotamers.cc -o richardson-rotamers.o >/dev/null 2>&1
mv -f .deps/richardson-rotamers.Tpo .deps/richardson-rotamers.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c -o richardson-rotamer.lo richardson-rotamer.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c richardson-rotamer.cc  -fPIC -DPIC -o .libs/richardson-rotamer.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c richardson-rotamer.cc -o richardson-rotamer.o >/dev/null 2>&1
mv -f .deps/richardson-rotamer.Tpo .deps/richardson-rotamer.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT rotamer.lo -MD -MP -MF .deps/rotamer.Tpo -c -o rotamer.lo rotamer.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rotamer.lo -MD -MP -MF .deps/rotamer.Tpo -c rotamer.cc  -fPIC -DPIC -o .libs/rotamer.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rotamer.lo -MD -MP -MF .deps/rotamer.Tpo -c rotamer.cc -o rotamer.o >/dev/null 2>&1
mv -f .deps/rotamer.Tpo .deps/rotamer.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT torsion-general.lo -MD -MP -MF .deps/torsion-general.Tpo -c -o torsion-general.lo torsion-general.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT torsion-general.lo -MD -MP -MF .deps/torsion-general.Tpo -c torsion-general.cc  -fPIC -DPIC -o .libs/torsion-general.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT torsion-general.lo -MD -MP -MF .deps/torsion-general.Tpo -c torsion-general.cc -o torsion-general.o >/dev/null 2>&1
mv -f .deps/torsion-general.Tpo .deps/torsion-general.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT rotamer-tables.lo -MD -MP -MF .deps/rotamer-tables.Tpo -c -o rotamer-tables.lo rotamer-tables.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rotamer-tables.lo -MD -MP -MF .deps/rotamer-tables.Tpo -c rotamer-tables.cc  -fPIC -DPIC -o .libs/rotamer-tables.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rotamer-tables.lo -MD -MP -MF .deps/rotamer-tables.Tpo -c rotamer-tables.cc -o rotamer-tables.o >/dev/null 2>&1
mv -f .deps/rotamer-tables.Tpo .deps/rotamer-tables.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT primitive-chi-angles.lo -MD -MP -MF .deps/primitive-chi-angles.Tpo -c -o primitive-chi-angles.lo primitive-chi-angles.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT primitive-chi-angles.lo -MD -MP -MF .deps/primitive-chi-angles.Tpo -c primitive-chi-angles.cc  -fPIC -DPIC -o .libs/primitive-chi-angles.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT primitive-chi-angles.lo -MD -MP -MF .deps/primitive-chi-angles.Tpo -c primitive-chi-angles.cc -o primitive-chi-angles.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT dipole.lo -MD -MP -MF .deps/dipole.Tpo -c -o dipole.lo dipole.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT dipole.lo -MD -MP -MF .deps/dipole.Tpo -c dipole.cc  -fPIC -DPIC -o .libs/dipole.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT dipole.lo -MD -MP -MF .deps/dipole.Tpo -c dipole.cc -o dipole.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c -o base-pairing.lo base-pairing.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c base-pairing.cc  -fPIC -DPIC -o .libs/base-pairing.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c base-pairing.cc -o base-pairing.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c -o backrub-rotamer.lo backrub-rotamer.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc  -fPIC -DPIC -o .libs/backrub-rotamer.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -o backrub-rotamer.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-ligand.la  ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo ../ideal/libcoot-ideal.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-ideal.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../ideal/.libs/libcoot-ideal.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-db-main.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../db-main/.libs/libcoot-db-main.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libccp4mg-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../ccp4mg-utils/.libs/libccp4mg-utils.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../mini-mol/.libs/libcoot-mini-mol.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coords/.libs/libcoot-coords.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-coord-extras.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-map-utils.a")
libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt2-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt2-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt3-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt3-mini-mol-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt4-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt4-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt5-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt5-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt6-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt6-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt7-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt7-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt8-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt8-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt9-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt9-atom-quads.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt10-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt10-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt11-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt11-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt12-lt5-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt12-lt5-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt13-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt13-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt14-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt14-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt15-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt15-mini-mol.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt16-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt16-lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt17-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt17-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt18-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt18-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt19-lt3-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt19-lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt20-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt20-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt21-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt21-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt22-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt22-lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt23-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt23-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt24-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt24-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt25-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt25-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt26-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt26-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt27-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt27-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt28-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt28-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt29-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt29-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt30-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt30-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt31-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt31-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt32-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt32-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt33-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt33-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt34-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt34-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt35-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt35-mini-mol-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt37-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt37-mini-mol.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt38-lt15-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt38-lt15-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt39-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt39-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-atomic-numbers.o .libs/libcoot-ligand.lax/lt40-lt14-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-atomic-numbers.o .libs/libcoot-ligand.lax/lt40-lt14-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt41-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt41-mini-mol-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-gdk-keysyms.o .libs/libcoot-ligand.lax/lt42-lt20-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-gdk-keysyms.o .libs/libcoot-ligand.lax/lt42-lt20-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt43-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt43-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt44-lt10-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt44-lt10-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-atomic-numbers.o .libs/libcoot-ligand.lax/lt45-lt27-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-atomic-numbers.o .libs/libcoot-ligand.lax/lt45-lt27-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt46-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt46-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt47-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt47-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt48-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt48-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-coot-fasta.o .libs/libcoot-ligand.lax/lt49-lt29-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-coot-fasta.o .libs/libcoot-ligand.lax/lt49-lt29-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt50-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt50-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-coot-fasta.o .libs/libcoot-ligand.lax/lt51-lt6-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-coot-fasta.o .libs/libcoot-ligand.lax/lt51-lt6-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt52-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt52-atom-quads.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-utils.o .libs/libcoot-ligand.lax/lt53-lt25-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-utils.o .libs/libcoot-ligand.lax/lt53-lt25-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt54-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt54-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt55-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt55-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt56-lt5-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt56-lt5-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-read-sbase.o .libs/libcoot-ligand.lax/lt57-lt24-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-read-sbase.o .libs/libcoot-ligand.lax/lt57-lt24-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/lt58-lt23-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/lt58-lt23-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-read-sbase.o .libs/libcoot-ligand.lax/lt59-lt8-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-read-sbase.o .libs/libcoot-ligand.lax/lt59-lt8-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt60-lt12-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt60-lt12-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-coot-utils.o .libs/libcoot-ligand.lax/lt61-lt9-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-coot-utils.o .libs/libcoot-ligand.lax/lt61-lt9-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt62-lt1-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt62-lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt63-lt5-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt63-lt5-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt64-lt30-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt64-lt30-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt65-lt17-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt65-lt17-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt66-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt66-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt67-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt67-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-coot-h-bonds.o .libs/libcoot-ligand.lax/lt68-lt26-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-coot-h-bonds.o .libs/libcoot-ligand.lax/lt68-lt26-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt69-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt69-mini-mol.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt70-lt18-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt70-lt18-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt71-lt21-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt71-lt21-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt72-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt72-lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt73-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt73-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt74-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt74-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-gdk-keysyms.o .libs/libcoot-ligand.lax/lt75-lt28-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-gdk-keysyms.o .libs/libcoot-ligand.lax/lt75-lt28-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt76-lt3-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt76-lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-lbg-graph.o .libs/libcoot-ligand.lax/lt77-lt2-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-lbg-graph.o .libs/libcoot-ligand.lax/lt77-lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-ligand.lax/lt78-lt4-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-ligand.lax/lt78-lt4-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt79-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt79-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt80-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt80-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt81-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt81-lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-energy-lib.o .libs/libcoot-ligand.lax/lt82-lt7-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-energy-lib.o .libs/libcoot-ligand.lax/lt82-lt7-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt83-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt83-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-coot-rama.o .libs/libcoot-ligand.lax/lt84-lt16-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-coot-rama.o .libs/libcoot-ligand.lax/lt84-lt16-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt85-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt85-lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt86-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt86-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-lbg-graph.o .libs/libcoot-ligand.lax/lt87-lt13-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-lbg-graph.o .libs/libcoot-ligand.lax/lt87-lt13-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-protein-geometry.o .libs/libcoot-ligand.lax/lt88-lt19-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-protein-geometry.o .libs/libcoot-ligand.lax/lt88-lt19-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-coot-coord-utils.o .libs/libcoot-ligand.lax/lt89-lt11-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-coot-coord-utils.o .libs/libcoot-ligand.lax/lt89-lt11-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt90-lt22-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt90-lt22-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt91-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt91-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt92-coot-coord-lsq.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt92-coot-coord-lsq.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt93-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt93-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt94-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt94-mini-mol-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt95-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt95-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt96-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt96-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt97-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt97-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt98-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt98-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt99-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt99-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt100-lsq-improve.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt100-lsq-improve.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt101-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt101-atom-quads.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt102-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt102-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt103-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt103-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt104-lt5-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/lt104-lt5-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt105-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt105-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt106-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt106-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt107-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt107-mini-mol.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt108-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt108-lt4-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt109-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt109-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt110-coot-coord-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt110-coot-coord-extras.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt111-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt111-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt112-lt3-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt112-lt3-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt113-water-coordination.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt113-water-coordination.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt114-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt114-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt115-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt115-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt117-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt117-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt118-coot-tree-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt118-coot-tree-extras.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt119-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt119-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt120-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt120-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt121-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt121-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt122-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt122-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt123-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt123-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt124-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt124-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt125-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt125-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt126-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt126-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt127-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt127-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt128-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt128-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt129-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt129-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt130-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt130-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt131-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt131-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt132-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt132-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt133-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt133-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt134-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt134-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt135-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt135-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt136-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt136-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt137-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt137-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt138-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt138-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt139-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt139-coot-coord-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt140-lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/lt140-lt4-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt141-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt141-lbg-graph.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt142-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt142-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt143-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt143-lt3-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt144-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt144-coot-rama.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt145-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt145-lt2-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt146-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt146-coot-coord-utils-nucleotides.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt147-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt147-protein-geometry.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt148-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt148-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt149-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt149-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt150-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt150-lt1-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt151-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt151-energy-lib.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt152-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt152-read-sbase.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt153-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt153-coot-utils.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt154-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt154-coot-h-bonds.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt155-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt155-atomic-numbers.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt156-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt156-gdk-keysyms.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt157-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt157-coot-fasta.o
libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt158-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt158-coot-utils.o
libtool: link: ar cru .libs/libcoot-ligand.a .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt15-lt3-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-ideal.a/simple-restraint-kk.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt14-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/mini-mol-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt20-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/simple-restraint.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt10-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt27-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/regularize-minimol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lbg-graph.o .libs/libcoot-ligand.lax/libcoot-ideal.a/pepflip.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt31-mini-mol-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lograma.o .libs/libcoot-ligand.lax/libcoot-ideal.a/extra-restraints-kk.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt29-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lsq-improve.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt6-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/atom-quads.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt25-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-rama.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt24-read-sbase.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/extra-restraints.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt8-read-sbase.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt12-lt4-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt9-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt1-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt5-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt17-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/libcoot-ideal.a/protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt26-coot-h-bonds.o .libs/libcoot-ligand.lax/libcoot-ideal.a/mini-mol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt18-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt33-mini-mol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-extras.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt28-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/water-coordination.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt32-atom-quads.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt2-lbg-graph.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt7-energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/read-sbase.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt16-coot-rama.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-tree-extras.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt13-lbg-graph.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt19-protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt11-coot-coord-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt22-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-h-bonds.o .libs/libcoot-ligand.lax/libcoot-db-main.a/db-main.o .libs/libcoot-ligand.lax/libcoot-db-main.a/db-strands.o .libs/libcoot-ligand.lax/lt2-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt3-mini-mol-utils.o .libs/libcoot-ligand.lax/lt4-coot-coord-utils.o .libs/libcoot-ligand.lax/lt5-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt6-lbg-graph.o .libs/libcoot-ligand.lax/lt7-atomic-numbers.o .libs/libcoot-ligand.lax/lt8-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt9-atom-quads.o .libs/libcoot-ligand.lax/lt10-coot-rama.o .libs/libcoot-ligand.lax/lt11-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt12-lt5-coot-utils.o .libs/libcoot-ligand.lax/lt13-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt14-protein-geometry.o .libs/libcoot-ligand.lax/lt15-mini-mol.o .libs/libcoot-ligand.lax/lt16-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt17-gdk-keysyms.o .libs/libcoot-ligand.lax/lt18-coot-fasta.o .libs/libcoot-ligand.lax/lt19-lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt20-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt21-energy-lib.o .libs/libcoot-ligand.lax/lt22-lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt23-read-sbase.o .libs/libcoot-ligand.lax/lt24-coot-utils.o .libs/libcoot-ligand.lax/lt25-coot-h-bonds.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/mgtree.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/matrix.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/cartesian.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/ppmutil.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/quat.o .libs/libcoot-ligand.lax/libccp4mg-utils.a/geomutil.o .libs/libcoot-ligand.lax/lt26-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt27-lbg-graph.o .libs/libcoot-ligand.lax/lt28-atomic-numbers.o .libs/libcoot-ligand.lax/lt29-protein-geometry.o .libs/libcoot-ligand.lax/lt30-gdk-keysyms.o .libs/libcoot-ligand.lax/lt31-coot-fasta.o .libs/libcoot-ligand.lax/lt32-energy-lib.o .libs/libcoot-ligand.lax/lt33-read-sbase.o .libs/libcoot-ligand.lax/lt34-coot-utils.o .libs/libcoot-ligand.lax/lt35-mini-mol-utils.o .libs/libcoot-ligand.lax/lt36-atom-quads.o .libs/libcoot-ligand.lax/lt37-mini-mol.o .libs/libcoot-ligand.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-ligand.lax/lt38-lt15-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt39-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt40-lt14-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-ligand.lax/lt41-mini-mol-utils.o .libs/libcoot-ligand.lax/lt42-lt20-gdk-keysyms.o .libs/libcoot-ligand.lax/lt43-coot-coord-utils.o .libs/libcoot-ligand.lax/lt44-lt10-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt45-lt27-atomic-numbers.o .libs/libcoot-ligand.lax/lt46-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt47-lbg-graph.o .libs/libcoot-ligand.lax/lt48-atomic-numbers.o .libs/libcoot-ligand.lax/lt49-lt29-coot-fasta.o .libs/libcoot-ligand.lax/lt50-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt51-lt6-coot-fasta.o .libs/libcoot-ligand.lax/lt52-atom-quads.o .libs/libcoot-ligand.lax/lt53-lt25-coot-utils.o .libs/libcoot-ligand.lax/lt54-coot-rama.o .libs/libcoot-ligand.lax/lt55-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-coords.a/lig-build.o .libs/libcoot-ligand.lax/lt56-lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt57-lt24-read-sbase.o .libs/libcoot-ligand.lax/libcoot-coords.a/utils.o .libs/libcoot-ligand.lax/lt58-lt23-energy-lib.o .libs/libcoot-ligand.lax/lt59-lt8-read-sbase.o .libs/libcoot-ligand.lax/lt60-lt12-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt61-lt9-coot-utils.o .libs/libcoot-ligand.lax/lt62-lt1-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt63-lt5-coot-utils.o .libs/libcoot-ligand.lax/libcoot-coords.a/mmdb.o .libs/libcoot-ligand.lax/lt64-lt30-coot-utils.o .libs/libcoot-ligand.lax/lt65-lt17-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-ligand.lax/lt66-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt67-protein-geometry.o .libs/libcoot-ligand.lax/lt68-lt26-coot-h-bonds.o .libs/libcoot-ligand.lax/lt69-mini-mol.o .libs/libcoot-ligand.lax/lt70-lt18-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt71-lt21-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-ligand.lax/lt72-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt73-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-ligand.lax/lt74-coot-fasta.o .libs/libcoot-ligand.lax/lt75-lt28-gdk-keysyms.o .libs/libcoot-ligand.lax/lt76-lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt77-lt2-lbg-graph.o .libs/libcoot-ligand.lax/lt78-lt4-protein-geometry.o .libs/libcoot-ligand.lax/lt79-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt80-energy-lib.o .libs/libcoot-ligand.lax/lt81-lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt82-lt7-energy-lib.o .libs/libcoot-ligand.lax/lt83-read-sbase.o .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-ligand.lax/lt84-lt16-coot-rama.o .libs/libcoot-ligand.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-ligand.lax/lt85-lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt86-coot-utils.o .libs/libcoot-ligand.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-ligand.lax/lt87-lt13-lbg-graph.o .libs/libcoot-ligand.lax/lt88-lt19-protein-geometry.o .libs/libcoot-ligand.lax/lt89-lt11-coot-coord-utils.o .libs/libcoot-ligand.lax/lt90-lt22-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-coords.a/coot-close.o .libs/libcoot-ligand.lax/lt91-coot-h-bonds.o .libs/libcoot-ligand.lax/lt92-coot-coord-lsq.o .libs/libcoot-ligand.lax/lt93-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt94-mini-mol-utils.o .libs/libcoot-ligand.lax/lt95-coot-coord-utils.o .libs/libcoot-ligand.lax/lt96-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt97-lbg-graph.o .libs/libcoot-ligand.lax/lt98-atomic-numbers.o .libs/libcoot-ligand.lax/lt99-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt100-lsq-improve.o .libs/libcoot-ligand.lax/lt101-atom-quads.o .libs/libcoot-ligand.lax/lt102-coot-rama.o .libs/libcoot-ligand.lax/lt103-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt104-lt5-coot-utils.o .libs/libcoot-ligand.lax/lt105-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt106-protein-geometry.o .libs/libcoot-ligand.lax/lt107-mini-mol.o .libs/libcoot-ligand.lax/lt108-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt109-gdk-keysyms.o .libs/libcoot-ligand.lax/lt110-coot-coord-extras.o .libs/libcoot-ligand.lax/lt111-coot-fasta.o .libs/libcoot-ligand.lax/lt112-lt3-gdk-keysyms.o .libs/libcoot-ligand.lax/lt113-water-coordination.o .libs/libcoot-ligand.lax/lt114-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt115-energy-lib.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt117-read-sbase.o .libs/libcoot-ligand.lax/lt118-coot-tree-extras.o .libs/libcoot-ligand.lax/lt119-coot-utils.o .libs/libcoot-ligand.lax/lt120-coot-h-bonds.o .libs/libcoot-ligand.lax/lt121-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt122-coot-coord-utils.o .libs/libcoot-ligand.lax/lt123-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt124-lbg-graph.o .libs/libcoot-ligand.lax/lt125-atomic-numbers.o .libs/libcoot-ligand.lax/lt126-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt127-coot-rama.o .libs/libcoot-ligand.lax/lt128-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt129-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt130-protein-geometry.o .libs/libcoot-ligand.lax/lt131-gdk-keysyms.o .libs/libcoot-ligand.lax/lt132-coot-fasta.o .libs/libcoot-ligand.lax/lt133-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt134-energy-lib.o .libs/libcoot-ligand.lax/lt135-read-sbase.o .libs/libcoot-ligand.lax/lt136-coot-utils.o .libs/libcoot-ligand.lax/lt137-coot-h-bonds.o .libs/libcoot-ligand.lax/lt138-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt139-coot-coord-utils.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/xmap-stats.o .libs/libcoot-ligand.lax/lt140-lt4-coot-utils.o .libs/libcoot-ligand.lax/lt141-lbg-graph.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/peak-search.o .libs/libcoot-ligand.lax/lt142-atomic-numbers.o .libs/libcoot-ligand.lax/lt143-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt144-coot-rama.o .libs/libcoot-ligand.lax/lt145-lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/trim.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/peak-search-from-list.o .libs/libcoot-ligand.lax/lt146-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt147-protein-geometry.o .libs/libcoot-ligand.lax/lt148-gdk-keysyms.o .libs/libcoot-ligand.lax/lt149-coot-fasta.o .libs/libcoot-ligand.lax/lt150-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt151-energy-lib.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-map-utils.o .libs/libcoot-ligand.lax/lt152-read-sbase.o .libs/libcoot-ligand.lax/lt153-coot-utils.o .libs/libcoot-ligand.lax/lt154-coot-h-bonds.o .libs/libcoot-ligand.lax/lt155-atomic-numbers.o .libs/libcoot-ligand.lax/lt156-gdk-keysyms.o .libs/libcoot-ligand.lax/lt157-coot-fasta.o .libs/libcoot-ligand.lax/lt158-coot-utils.o
libtool: link: ranlib .libs/libcoot-ligand.a
libtool: link: rm -fr .libs/libcoot-ligand.lax .libs/libcoot-ligand.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc
mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o findligand-real find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o findligand-real find-ligand.o  ./.libs/libcoot-ligand.a -L/usr/lib -L/usr ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../db-main/.libs/libcoot-db-main.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-shelx.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP    -DPKGDATADIR='"/usr/share/coot"'  -g -O2 -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc
mv -f .deps/find-waters.Tpo .deps/find-waters.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"'  -g -O2  -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o  ./.libs/libcoot-ligand.a -L/usr/lib -L/usr ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../db-main/.libs/libcoot-db-main.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-shelx.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
Making all in high-res
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DHAVE_GSL -I/usr/include -g -O2 -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c -o high-res.lo high-res.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc  -fPIC -DPIC -o .libs/high-res.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc -o high-res.o >/dev/null 2>&1
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DHAVE_GSL -I/usr/include -g -O2 -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c -o coot-atom-graph.lo coot-atom-graph.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc  -fPIC -DPIC -o .libs/coot-atom-graph.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc -o coot-atom-graph.o >/dev/null 2>&1
mv -f .deps/coot-atom-graph.Tpo .deps/coot-atom-graph.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DHAVE_GSL -I/usr/include -g -O2 -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c -o residue-distortions.lo residue-distortions.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc  -fPIC -DPIC -o .libs/residue-distortions.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -o residue-distortions.o >/dev/null 2>&1
mv -f .deps/residue-distortions.Tpo .deps/residue-distortions.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4     -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c -o sequence-assignment.lo sequence-assignment.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc  -fPIC -DPIC -o .libs/sequence-assignment.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -o sequence-assignment.o >/dev/null 2>&1
mv -f .deps/sequence-assignment.Tpo .deps/sequence-assignment.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DHAVE_GSL -I/usr/include -g -O2  -Wl,-Bsymbolic-functions -o libcoot-high-res.la  high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/high-res/../mini-mol/.libs/libcoot-mini-mol.a")
libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-ligand.a && ar x "/build/buildd/coot-0.7pre1+svn3470/high-res/../ligand/.libs/libcoot-ligand.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt1-mini-mol-utils.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt1-mini-mol-utils.o
libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt2-atom-quads.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt2-atom-quads.o
libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt3-mini-mol.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt3-mini-mol.o
libtool: link: ar cru .libs/libcoot-high-res.a .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt108-lt4-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-coord-lsq.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt143-lt3-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/Bond_lines_ext.o .libs/libcoot-high-res.lax/libcoot-ligand.a/db-main.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt156-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt15-lt3-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/db-strands.o .libs/libcoot-high-res.lax/libcoot-ligand.a/protein-geometry-mmdb.o .libs/libcoot-high-res.lax/libcoot-ligand.a/simple-restraint-kk.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt14-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/cos-sin.o .libs/libcoot-high-res.lax/lt1-mini-mol-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/dunbrack.o .libs/libcoot-high-res.lax/libcoot-ligand.a/chi-angles-autogen.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt85-lt3-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt28-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt65-lt17-lt2-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt120-coot-h-bonds.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt15-mini-mol.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt20-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt54-coot-rama.o .libs/libcoot-high-res.lax/libcoot-ligand.a/simple-restraint.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-coord-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt112-lt3-gdk-keysyms.o 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/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcoot-analysis.la  bfkurt.lo ../coot-utils/libcoot-coord-utils.la -L/usr/lib -L/usr -lmmdb -lm  
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Making all in tw
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/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I.  -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1       -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc  -fPIC -DPIC -o .libs/tw.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o >/dev/null 2>&1
mv -f .deps/tw.Tpo .deps/tw.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-tw.la  tw.lo  
libtool: link: ar cru .libs/libcoot-tw.a .libs/tw.o 
libtool: link: ranlib .libs/libcoot-tw.a
libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I.  -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1       -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tiddly.o -MD -MP -MF .deps/tiddly.Tpo -c -o tiddly.o tiddly.cc
mv -f .deps/tiddly.Tpo .deps/tiddly.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o libcoot-tw.la  -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o -pthread  ./.libs/libcoot-tw.a -L/usr/lib/i386-linux-gnu /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/i386-linux-gnu/libatk-1.0.so /usr/lib/i386-linux-gnu/libgio-2.0.so /usr/lib/i386-linux-gnu/libpangoft2-1.0.so /usr/lib/i386-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/i386-linux-gnu/libpango-1.0.so /usr/lib/i386-linux-gnu/libfreetype.so -lfontconfig /usr/lib/i386-linux-gnu/libgobject-2.0.so /usr/lib/i386-linux-gnu/libgmodule-2.0.so /usr/lib/i386-linux-gnu/libgthread-2.0.so -lrt /usr/lib/i386-linux-gnu/libglib-2.0.so -pthread
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw'
Making all in lbg
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c -o lbg.lo lbg.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc  -fPIC -DPIC -o .libs/lbg.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc -o lbg.o >/dev/null 2>&1
mv -f .deps/lbg.Tpo .deps/lbg.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo wmolecule.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc  -fPIC -DPIC -o .libs/wmolecule.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -o wmolecule.o >/dev/null 2>&1
mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo lbg-search.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc  -fPIC -DPIC -o .libs/lbg-search.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -o lbg-search.o >/dev/null 2>&1
mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c -o residue-circles.lo residue-circles.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc  -fPIC -DPIC -o .libs/residue-circles.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -o residue-circles.o >/dev/null 2>&1
mv -f .deps/residue-circles.Tpo .deps/residue-circles.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c -o rdkit-interface.lo rdkit-interface.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc  -fPIC -DPIC -o .libs/rdkit-interface.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -o rdkit-interface.o >/dev/null 2>&1
mv -f .deps/rdkit-interface.Tpo .deps/rdkit-interface.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c -o flev-annotations.lo flev-annotations.cc
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc  -fPIC -DPIC -o .libs/flev-annotations.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -o flev-annotations.o >/dev/null 2>&1
mv -f .deps/flev-annotations.Tpo .deps/flev-annotations.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o libcoot-lidia.la  lbg.lo wmolecule.lo lbg-search.lo residue-circles.lo rdkit-interface.lo flev-annotations.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm  -lgoocanvas -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   
libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../coot-utils/.libs/libcoot-coord-utils.a")
libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../geometry/.libs/libcoot-geometry.a")
libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-lidia-core.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../lidia-core/.libs/libcoot-lidia-core.a")
libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../utils/.libs/libcoot-utils.a")
copying selected object files to avoid basename conflicts...
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt1-protein-geometry-mmdb.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt1-protein-geometry-mmdb.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-lidia.lax/lt2-lbg-graph.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-lidia.lax/lt2-lbg-graph.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt3-atomic-numbers.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt3-atomic-numbers.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-lidia.lax/lt4-protein-geometry.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-lidia.lax/lt4-protein-geometry.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt5-gdk-keysyms.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt5-gdk-keysyms.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-lidia.lax/lt6-coot-fasta.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-lidia.lax/lt6-coot-fasta.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-lidia.lax/lt7-energy-lib.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-lidia.lax/lt7-energy-lib.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-lidia.lax/lt8-read-sbase.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-lidia.lax/lt8-read-sbase.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-lidia.lax/lt9-coot-utils.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-lidia.lax/lt9-coot-utils.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt10-atomic-numbers.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt10-atomic-numbers.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt11-gdk-keysyms.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt11-gdk-keysyms.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/lt12-coot-fasta.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/lt12-coot-fasta.o
libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-lidia.lax/lt13-coot-utils.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-lidia.lax/lt13-coot-utils.o
libtool: link: ar cru .libs/libcoot-lidia.a .libs/lbg.o .libs/wmolecule.o .libs/lbg-search.o .libs/residue-circles.o .libs/rdkit-interface.o .libs/flev-annotations.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt4-coot-utils.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt2-gdk-keysyms.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-lidia.lax/lt1-protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt2-lbg-graph.o .libs/libcoot-lidia.lax/lt3-atomic-numbers.o .libs/libcoot-lidia.lax/lt4-protein-geometry.o .libs/libcoot-lidia.lax/lt5-gdk-keysyms.o .libs/libcoot-lidia.lax/lt6-coot-fasta.o .libs/libcoot-lidia.lax/lt7-energy-lib.o .libs/libcoot-lidia.lax/lt8-read-sbase.o .libs/libcoot-lidia.lax/lt9-coot-utils.o .libs/libcoot-lidia.lax/libcoot-lidia-core.a/lig-build.o .libs/libcoot-lidia.lax/libcoot-lidia-core.a/lbg-molfile.o .libs/libcoot-lidia.lax/lt10-atomic-numbers.o .libs/libcoot-lidia.lax/lt11-gdk-keysyms.o .libs/libcoot-lidia.lax/lt12-coot-fasta.o .libs/libcoot-lidia.lax/lt13-coot-utils.o
libtool: link: ranlib .libs/libcoot-lidia.a
libtool: link: rm -fr .libs/libcoot-lidia.lax .libs/libcoot-lidia.lax
libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o lidia-main.cc
mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP      -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc
mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2  -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o ./libcoot-lidia.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm  -lgoocanvas -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o -pthread  ./.libs/libcoot-lidia.a -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../lidia-core/.libs/libcoot-lidia-core.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lgoocanvas -L/usr/lib/i386-linux-gnu /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/i386-linux-gnu/libatk-1.0.so /usr/lib/i386-linux-gnu/libgio-2.0.so /usr/lib/i386-linux-gnu/libpangoft2-1.0.so /usr/lib/i386-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/i386-linux-gnu/libpango-1.0.so /usr/lib/i386-linux-gnu/libfreetype.so -lfontconfig /usr/lib/i386-linux-gnu/libgobject-2.0.so /usr/lib/i386-linux-gnu/libgmodule-2.0.so /usr/lib/i386-linux-gnu/libgthread-2.0.so -lrt /usr/lib/i386-linux-gnu/libglib-2.0.so -pthread
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
Making all in cootaneer
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP     -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c -o buccaneer-lib.lo buccaneer-lib.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp  -fPIC -DPIC -o .libs/buccaneer-lib.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -o buccaneer-lib.o >/dev/null 2>&1
mv -f .deps/buccaneer-lib.Tpo .deps/buccaneer-lib.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP     -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c -o buccaneer-prot.lo buccaneer-prot.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp  -fPIC -DPIC -o .libs/buccaneer-prot.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -o buccaneer-prot.o >/dev/null 2>&1
mv -f .deps/buccaneer-prot.Tpo .deps/buccaneer-prot.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP     -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c -o buccaneer-sequence.lo buccaneer-sequence.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp  -fPIC -DPIC -o .libs/buccaneer-sequence.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -o buccaneer-sequence.o >/dev/null 2>&1
mv -f .deps/buccaneer-sequence.Tpo .deps/buccaneer-sequence.Plo
/bin/bash ../libtool --tag=CXX   --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP     -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c -o cootaneer-sequence.lo cootaneer-sequence.cpp
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp  -fPIC -DPIC -o .libs/cootaneer-sequence.o
libtool: compile:  g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -o cootaneer-sequence.o >/dev/null 2>&1
mv -f .deps/cootaneer-sequence.Tpo .deps/cootaneer-sequence.Plo
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o libcootaneer.la  buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread 
libtool: link: ar cru .libs/libcootaneer.a .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o 
libtool: link: ranlib .libs/libcootaneer.a
libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" )
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4   -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP     -g -O2 -MT cootaneer-demo.o -MD -MP -MF .deps/cootaneer-demo.Tpo -c -o cootaneer-demo.o cootaneer-demo.cpp
mv -f .deps/cootaneer-demo.Tpo .deps/cootaneer-demo.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++  -g -O2  -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o ./libcootaneer.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm  
libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o  ./.libs/libcootaneer.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
Making all in src
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src'
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc
mv -f .deps/main.Tpo .deps/main.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT svn-revision.o -MD -MP -MF .deps/svn-revision.Tpo -c -o svn-revision.o svn-revision.cc
mv -f .deps/svn-revision.Tpo .deps/svn-revision.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT c-inner-main.o -MD -MP -MF .deps/c-inner-main.Tpo -c -o c-inner-main.o c-inner-main.c
mv -f .deps/c-inner-main.Tpo .deps/c-inner-main.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build.o -MD -MP -MF .deps/c-interface-build.Tpo -c -o c-interface-build.o c-interface-build.cc
mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build-gui.o -MD -MP -MF .deps/c-interface-build-gui.Tpo -c -o c-interface-build-gui.o c-interface-build-gui.cc
mv -f .deps/c-interface-build-gui.Tpo .deps/c-interface-build-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-database.o -MD -MP -MF .deps/c-interface-database.Tpo -c -o c-interface-database.o c-interface-database.cc
mv -f .deps/c-interface-database.Tpo .deps/c-interface-database.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-pisa.o -MD -MP -MF .deps/c-interface-pisa.Tpo -c -o c-interface-pisa.o c-interface-pisa.cc
mv -f .deps/c-interface-pisa.Tpo .deps/c-interface-pisa.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-pisa-gui.o -MD -MP -MF .deps/c-interface-pisa-gui.Tpo -c -o c-interface-pisa-gui.o c-interface-pisa-gui.cc
mv -f .deps/c-interface-pisa-gui.Tpo .deps/c-interface-pisa-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-gui.o -MD -MP -MF .deps/c-interface-gui.Tpo -c -o c-interface-gui.o c-interface-gui.cc
mv -f .deps/c-interface-gui.Tpo .deps/c-interface-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-gtk2.o -MD -MP -MF .deps/c-interface-gtk2.Tpo -c -o c-interface-gtk2.o c-interface-gtk2.cc
mv -f .deps/c-interface-gtk2.Tpo .deps/c-interface-gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-info.o -MD -MP -MF .deps/c-interface-info.Tpo -c -o c-interface-info.o c-interface-info.cc
mv -f .deps/c-interface-info.Tpo .deps/c-interface-info.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-kk.o -MD -MP -MF .deps/c-interface-kk.Tpo -c -o c-interface-kk.o c-interface-kk.cc
mv -f .deps/c-interface-kk.Tpo .deps/c-interface-kk.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o c-interface-ligands.cc
mv -f .deps/c-interface-ligands.Tpo .deps/c-interface-ligands.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o c-interface-ligands-gui.cc
mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o c-interface-mmdb.cc
mv -f .deps/c-interface-mmdb.Tpo .deps/c-interface-mmdb.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mutate.o -MD -MP -MF .deps/c-interface-mutate.Tpo -c -o c-interface-mutate.o c-interface-mutate.cc
mv -f .deps/c-interface-mutate.Tpo .deps/c-interface-mutate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ncs.o -MD -MP -MF .deps/c-interface-ncs.Tpo -c -o c-interface-ncs.o c-interface-ncs.cc
mv -f .deps/c-interface-ncs.Tpo .deps/c-interface-ncs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-network.o -MD -MP -MF .deps/c-interface-network.Tpo -c -o c-interface-network.o c-interface-network.cc
mv -f .deps/c-interface-network.Tpo .deps/c-interface-network.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-nucleotides.o -MD -MP -MF .deps/c-interface-nucleotides.Tpo -c -o c-interface-nucleotides.o c-interface-nucleotides.cc
mv -f .deps/c-interface-nucleotides.Tpo .deps/c-interface-nucleotides.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-python.o -MD -MP -MF .deps/c-interface-python.Tpo -c -o c-interface-python.o c-interface-python.cc
mv -f .deps/c-interface-python.Tpo .deps/c-interface-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-preferences.o -MD -MP -MF .deps/c-interface-preferences.Tpo -c -o c-interface-preferences.o c-interface-preferences.cc
mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-refine.o -MD -MP -MF .deps/c-interface-refine.Tpo -c -o c-interface-refine.o c-interface-refine.cc
mv -f .deps/c-interface-refine.Tpo .deps/c-interface-refine.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o c-interface-scm.cc
mv -f .deps/c-interface-scm.Tpo .deps/c-interface-scm.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-superpose.o -MD -MP -MF .deps/c-interface-superpose.Tpo -c -o c-interface-superpose.o c-interface-superpose.cc
mv -f .deps/c-interface-superpose.Tpo .deps/c-interface-superpose.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-validate.o -MD -MP -MF .deps/c-interface-validate.Tpo -c -o c-interface-validate.o c-interface-validate.cc
mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-view.o -MD -MP -MF .deps/c-interface-view.Tpo -c -o c-interface-view.o c-interface-view.cc
In file included from /usr/include/python2.7/Python.h:8:0,
                 from cc-interface.hh:34,
                 from c-interface-view.cc:8:
/usr/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
/usr/include/features.h:163:0: note: this is the location of the previous definition
/usr/include/python2.7/pyconfig.h:1177:0: warning: "_XOPEN_SOURCE" redefined
/usr/include/features.h:165:0: note: this is the location of the previous definition
mv -f .deps/c-interface-view.Tpo .deps/c-interface-view.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-widgets.o -MD -MP -MF .deps/c-interface-widgets.Tpo -c -o c-interface-widgets.o c-interface-widgets.cc
mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters.o -MD -MP -MF .deps/c-interface-waters.Tpo -c -o c-interface-waters.o c-interface-waters.cc
mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o c-interface-waters-gui.cc
mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o c-interface.cc
mv -f .deps/c-interface.Tpo .deps/c-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-test.o -MD -MP -MF .deps/c-interface-test.Tpo -c -o c-interface-test.o c-interface-test.cc
mv -f .deps/c-interface-test.Tpo .deps/c-interface-test.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o callbacks.c
callbacks.c: In function 'on_ok_button_coordinates_clicked':
callbacks.c:206:16: warning: unused variable 'filename'
callbacks.c: In function 'on_ok_button_dataset_clicked':
callbacks.c:303:7: warning: unused variable 'itmp'
callbacks.c: In function 'on_about1_activate':
callbacks.c:393:15: warning: unused variable 'text_widget'
callbacks.c: In function 'on_show_symmetry_ok_button_clicked':
callbacks.c:682:8: warning: unused variable 'imol'
callbacks.c: In function 'on_show_symmetry_apply_button_clicked':
callbacks.c:771:8: warning: unused variable 'imol'
callbacks.c: In function 'on_anisotropic_atoms1_activate':
callbacks.c:886:8: warning: unused variable 'imol'
callbacks.c: In function 'on_show_aniso_ok_button_clicked':
callbacks.c:949:8: warning: unused variable 'imol'
callbacks.c: In function 'on_find_ligand_many_atoms_continue_button_clicked':
callbacks.c:2082:4: warning: implicit declaration of function 'execute_ligand_search_py'
callbacks.c: In function 'on_pointer_atom_type_ok_button_clicked':
callbacks.c:3790:9: warning: unused variable 'type'
callbacks.c: In function 'on_run_refmac_phase_input_optionmenu_changed':
callbacks.c:3959:14: warning: unused variable 'sad_checkbutton'
callbacks.c: In function 'on_run_refmac_twin_checkbutton_toggled':
callbacks.c:4040:14: warning: unused variable 'mtz_file_frame'
callbacks.c: In function 'on_run_refmac_mtz_filechooser_button_clicked':
callbacks.c:4195:16: warning: unused variable 'mtz_filename'
callbacks.c:4194:14: warning: unused variable 'mtz_file_label'
callbacks.c: In function 'on_centre_atom_label_ok_button_clicked':
callbacks.c:5395:14: warning: unused variable 'off'
callbacks.c: In function 'on_column_label_expert_mode_button_clicked':
callbacks.c:5634:13: warning: unused variable 'is_expert_mode_flag'
callbacks.c: In function 'on_preferences_destroy':
callbacks.c:6472:14: warning: unused variable 'w'
callbacks.c: In function 'on_preferences_model_toolbar_show_radiobutton_toggled':
callbacks.c:7639:14: warning: unused variable 'w'
callbacks.c: In function 'on_preferences_model_toolbar_right_radiobutton_toggled':
callbacks.c:7653:14: warning: unused variable 'show'
callbacks.c: In function 'on_preferences_model_toolbar_left_radiobutton_toggled':
callbacks.c:7667:14: warning: unused variable 'show'
callbacks.c: In function 'on_preferences_model_toolbar_top_radiobutton_toggled':
callbacks.c:7681:14: warning: unused variable 'show'
callbacks.c: In function 'on_preferences_model_toolbar_bottom_radiobutton_toggled':
callbacks.c:7695:14: warning: unused variable 'show'
callbacks.c: In function 'on_pointer_distances_checkbutton_toggled':
callbacks.c:7943:15: warning: unused variable 'dialog'
callbacks.c: In function 'on_delete_item_dialog_destroy':
callbacks.c:8128:15: warning: unused variable 'w'
callbacks.c: In function 'on_ncs_controller_molecule_n_display_chain_ich_checkbutton_toggled':
callbacks.c:8893:15: warning: unused variable 'w'
callbacks.c: In function 'on_dataset_filechooserdialog1_response':
callbacks.c:10495:7: warning: unused variable 'itmp'
callbacks.c: In function 'on_refine_params_weight_matrix_entry_changed':
callbacks.c:11813:16: warning: unused variable 'text'
mv -f .deps/callbacks.Tpo .deps/callbacks.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT cmtz-interface.o -MD -MP -MF .deps/cmtz-interface.Tpo -c -o cmtz-interface.o cmtz-interface.cc
mv -f .deps/cmtz-interface.Tpo .deps/cmtz-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT command-line.o -MD -MP -MF .deps/command-line.Tpo -c -o command-line.o command-line.cc
mv -f .deps/command-line.Tpo .deps/command-line.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT cmdline.o -MD -MP -MF .deps/cmdline.Tpo -c -o cmdline.o cmdline.c
mv -f .deps/cmdline.Tpo .deps/cmdline.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o coot-align.cc
mv -f .deps/coot-align.Tpo .deps/coot-align.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot-nomenclature.o -MD -MP -MF .deps/coot-nomenclature.Tpo -c -o coot-nomenclature.o coot-nomenclature.cc
mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue.o -MD -MP -MF .deps/coot-glue.Tpo -c -o coot-glue.o coot-glue.c
mv -f .deps/coot-glue.Tpo .deps/coot-glue.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o coot-glue-gtk2.c
mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o coot-glue-gtk2-python.cc
mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o coot-hydrogens.cc
mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o coot_pythonmodule.cc
mv -f .deps/coot_pythonmodule.Tpo .deps/coot_pythonmodule.Po
swig -o coot_wrap_guile_pre_gtk1.cc -DHAVE_SYS_STDTYPES_H=0   -I../src -guile -c++ ../src/coot.i
/bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk1 coot_wrap_guile_pre_gtk1.cc coot_wrap_guile_gtk1.cc
guile_config:
guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found
gtk2: gtk1
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_guile_gtk1.o -MD -MP -MF .deps/coot_wrap_guile_gtk1.Tpo -c -o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk1.cc
mv -f .deps/coot_wrap_guile_gtk1.Tpo .deps/coot_wrap_guile_gtk1.Po
swig -o coot_wrap_guile_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE  -DHAVE_SYS_STDTYPES_H=0    -I../src -guile -c++ ../src/coot.i
/bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk2 coot_wrap_guile_pre_gtk2.cc coot_wrap_guile_gtk2.cc
guile_config:
guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found
gtk2: gtk2
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_guile_gtk2.o -MD -MP -MF .deps/coot_wrap_guile_gtk2.Tpo -c -o coot_wrap_guile_gtk2.o coot_wrap_guile_gtk2.cc
mv -f .deps/coot_wrap_guile_gtk2.Tpo .deps/coot_wrap_guile_gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT geometry-graphs.o -MD -MP -MF .deps/geometry-graphs.Tpo -c -o geometry-graphs.o geometry-graphs.cc
mv -f .deps/geometry-graphs.Tpo .deps/geometry-graphs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT get-residue.o -MD -MP -MF .deps/get-residue.Tpo -c -o get-residue.o get-residue.cc
mv -f .deps/get-residue.Tpo .deps/get-residue.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT flev.o -MD -MP -MF .deps/flev.Tpo -c -o flev.o flev.cc
mv -f .deps/flev.Tpo .deps/flev.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT globjects.o -MD -MP -MF .deps/globjects.Tpo -c -o globjects.o globjects.cc
mv -f .deps/globjects.Tpo .deps/globjects.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info.o -MD -MP -MF .deps/graphics-info.Tpo -c -o graphics-info.o graphics-info.cc
mv -f .deps/graphics-info.Tpo .deps/graphics-info.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-defines.o -MD -MP -MF .deps/graphics-info-defines.Tpo -c -o graphics-info-defines.o graphics-info-defines.cc
mv -f .deps/graphics-info-defines.Tpo .deps/graphics-info-defines.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-refmac.o -MD -MP -MF .deps/graphics-info-refmac.Tpo -c -o graphics-info-refmac.o graphics-info-refmac.cc
mv -f .deps/graphics-info-refmac.Tpo .deps/graphics-info-refmac.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-graphs.o -MD -MP -MF .deps/graphics-info-graphs.Tpo -c -o graphics-info-graphs.o graphics-info-graphs.cc
mv -f .deps/graphics-info-graphs.Tpo .deps/graphics-info-graphs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-gui.o -MD -MP -MF .deps/graphics-info-gui.Tpo -c -o graphics-info-gui.o graphics-info-gui.cc
mv -f .deps/graphics-info-gui.Tpo .deps/graphics-info-gui.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-modelling.o -MD -MP -MF .deps/graphics-info-modelling.Tpo -c -o graphics-info-modelling.o graphics-info-modelling.cc
mv -f .deps/graphics-info-modelling.Tpo .deps/graphics-info-modelling.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation.o -MD -MP -MF .deps/graphics-info-navigation.Tpo -c -o graphics-info-navigation.o graphics-info-navigation.cc
mv -f .deps/graphics-info-navigation.Tpo .deps/graphics-info-navigation.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation-gtk1.o -MD -MP -MF .deps/graphics-info-navigation-gtk1.Tpo -c -o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk1.cc
mv -f .deps/graphics-info-navigation-gtk1.Tpo .deps/graphics-info-navigation-gtk1.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation-gtk2.o -MD -MP -MF .deps/graphics-info-navigation-gtk2.Tpo -c -o graphics-info-navigation-gtk2.o graphics-info-navigation-gtk2.cc
mv -f .deps/graphics-info-navigation-gtk2.Tpo .deps/graphics-info-navigation-gtk2.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-preferences.o -MD -MP -MF .deps/graphics-info-preferences.Tpo -c -o graphics-info-preferences.o graphics-info-preferences.cc
mv -f .deps/graphics-info-preferences.Tpo .deps/graphics-info-preferences.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-network.o -MD -MP -MF .deps/graphics-info-network.Tpo -c -o graphics-info-network.o graphics-info-network.cc
mv -f .deps/graphics-info-network.Tpo .deps/graphics-info-network.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-mutate.o -MD -MP -MF .deps/graphics-info-mutate.Tpo -c -o graphics-info-mutate.o graphics-info-mutate.cc
mv -f .deps/graphics-info-mutate.Tpo .deps/graphics-info-mutate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-lsq.o -MD -MP -MF .deps/graphics-info-lsq.Tpo -c -o graphics-info-lsq.o graphics-info-lsq.cc
mv -f .deps/graphics-info-lsq.Tpo .deps/graphics-info-lsq.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-pick.o -MD -MP -MF .deps/graphics-info-pick.Tpo -c -o graphics-info-pick.o graphics-info-pick.cc
mv -f .deps/graphics-info-pick.Tpo .deps/graphics-info-pick.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-render.o -MD -MP -MF .deps/graphics-info-render.Tpo -c -o graphics-info-render.o graphics-info-render.cc
mv -f .deps/graphics-info-render.Tpo .deps/graphics-info-render.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-state.o -MD -MP -MF .deps/graphics-info-state.Tpo -c -o graphics-info-state.o graphics-info-state.cc
mv -f .deps/graphics-info-state.Tpo .deps/graphics-info-state.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-superpose.o -MD -MP -MF .deps/graphics-info-superpose.Tpo -c -o graphics-info-superpose.o graphics-info-superpose.cc
mv -f .deps/graphics-info-superpose.Tpo .deps/graphics-info-superpose.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT gl-matrix.o -MD -MP -MF .deps/gl-matrix.Tpo -c -o gl-matrix.o gl-matrix.cc
mv -f .deps/gl-matrix.Tpo .deps/gl-matrix.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT gtk-manual.o -MD -MP -MF .deps/gtk-manual.Tpo -c -o gtk-manual.o gtk-manual.cc
mv -f .deps/gtk-manual.Tpo .deps/gtk-manual.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT gtk-widget-conversion-utils.o -MD -MP -MF .deps/gtk-widget-conversion-utils.Tpo -c -o gtk-widget-conversion-utils.o gtk-widget-conversion-utils.cc
mv -f .deps/gtk-widget-conversion-utils.Tpo .deps/gtk-widget-conversion-utils.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT gtk2-interface.o -MD -MP -MF .deps/gtk2-interface.Tpo -c -o gtk2-interface.o gtk2-interface.c
mv -f .deps/gtk2-interface.Tpo .deps/gtk2-interface.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c
mv -f .deps/interface.Tpo .deps/interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc
mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT lbg-interface.o -MD -MP -MF .deps/lbg-interface.Tpo -c -o lbg-interface.o lbg-interface.cc
mv -f .deps/lbg-interface.Tpo .deps/lbg-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info.o -MD -MP -MF .deps/molecule-class-info.Tpo -c -o molecule-class-info.o molecule-class-info.cc
mv -f .deps/molecule-class-info.Tpo .deps/molecule-class-info.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-maps.o -MD -MP -MF .deps/molecule-class-info-maps.Tpo -c -o molecule-class-info-maps.o molecule-class-info-maps.cc
mv -f .deps/molecule-class-info-maps.Tpo .deps/molecule-class-info-maps.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-other.o -MD -MP -MF .deps/molecule-class-info-other.Tpo -c -o molecule-class-info-other.o molecule-class-info-other.cc
mv -f .deps/molecule-class-info-other.Tpo .deps/molecule-class-info-other.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-build.o -MD -MP -MF .deps/molecule-class-info-build.Tpo -c -o molecule-class-info-build.o molecule-class-info-build.cc
mv -f .deps/molecule-class-info-build.Tpo .deps/molecule-class-info-build.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-mutate.o -MD -MP -MF .deps/molecule-class-info-mutate.Tpo -c -o molecule-class-info-mutate.o molecule-class-info-mutate.cc
mv -f .deps/molecule-class-info-mutate.Tpo .deps/molecule-class-info-mutate.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-residues.o -MD -MP -MF .deps/molecule-class-info-residues.Tpo -c -o molecule-class-info-residues.o molecule-class-info-residues.cc
mv -f .deps/molecule-class-info-residues.Tpo .deps/molecule-class-info-residues.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-refine.o -MD -MP -MF .deps/molecule-class-info-refine.Tpo -c -o molecule-class-info-refine.o molecule-class-info-refine.cc
mv -f .deps/molecule-class-info-refine.Tpo .deps/molecule-class-info-refine.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-kk.o -MD -MP -MF .deps/molecule-class-info-kk.Tpo -c -o molecule-class-info-kk.o molecule-class-info-kk.cc
mv -f .deps/molecule-class-info-kk.Tpo .deps/molecule-class-info-kk.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-surface.o -MD -MP -MF .deps/molecule-class-info-surface.Tpo -c -o molecule-class-info-surface.o molecule-class-info-surface.cc
mv -f .deps/molecule-class-info-surface.Tpo .deps/molecule-class-info-surface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-ncs.o -MD -MP -MF .deps/molecule-class-info-ncs.Tpo -c -o molecule-class-info-ncs.o molecule-class-info-ncs.cc
mv -f .deps/molecule-class-info-ncs.Tpo .deps/molecule-class-info-ncs.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-widget-work.o -MD -MP -MF .deps/molecule-class-info-widget-work.Tpo -c -o molecule-class-info-widget-work.o molecule-class-info-widget-work.cc
mv -f .deps/molecule-class-info-widget-work.Tpo .deps/molecule-class-info-widget-work.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT nsv.o -MD -MP -MF .deps/nsv.Tpo -c -o nsv.o nsv.cc
mv -f .deps/nsv.Tpo .deps/nsv.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT pick.o -MD -MP -MF .deps/pick.Tpo -c -o pick.o pick.cc
mv -f .deps/pick.Tpo .deps/pick.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT protein_db-interface.o -MD -MP -MF .deps/protein_db-interface.Tpo -c -o protein_db-interface.o protein_db-interface.cc
mv -f .deps/protein_db-interface.Tpo .deps/protein_db-interface.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT read-phs.o -MD -MP -MF .deps/read-phs.Tpo -c -o read-phs.o read-phs.c
read-phs.c: In function 'try_read_phs_file':
read-phs.c:47:8: warning: unused variable 'is_pha_extension'
mv -f .deps/read-phs.Tpo .deps/read-phs.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT read-cif.o -MD -MP -MF .deps/read-cif.Tpo -c -o read-cif.o read-cif.c
mv -f .deps/read-cif.Tpo .deps/read-cif.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT rama_mousey.o -MD -MP -MF .deps/rama_mousey.Tpo -c -o rama_mousey.o rama_mousey.cc
mv -f .deps/rama_mousey.Tpo .deps/rama_mousey.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT rama_plot.o -MD -MP -MF .deps/rama_plot.Tpo -c -o rama_plot.o rama_plot.cc
mv -f .deps/rama_plot.Tpo .deps/rama_plot.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT restraints-editor.o -MD -MP -MF .deps/restraints-editor.Tpo -c -o restraints-editor.o restraints-editor.cc
mv -f .deps/restraints-editor.Tpo .deps/restraints-editor.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.c
mv -f .deps/support.Tpo .deps/support.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support-gtk2-extras.o -MD -MP -MF .deps/support-gtk2-extras.Tpo -c -o support-gtk2-extras.o support-gtk2-extras.c
mv -f .deps/support-gtk2-extras.Tpo .deps/support-gtk2-extras.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT testing.o -MD -MP -MF .deps/testing.Tpo -c -o testing.o testing.cc
mv -f .deps/testing.Tpo .deps/testing.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c
mv -f .deps/trackball.Tpo .deps/trackball.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT sequence-view.o -MD -MP -MF .deps/sequence-view.Tpo -c -o sequence-view.o sequence-view.cc
mv -f .deps/sequence-view.Tpo .deps/sequence-view.Po
gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT seq-view-interface.o -MD -MP -MF .deps/seq-view-interface.Tpo -c -o seq-view-interface.o seq-view-interface.c
mv -f .deps/seq-view-interface.Tpo .deps/seq-view-interface.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT user-mods.o -MD -MP -MF .deps/user-mods.Tpo -c -o user-mods.o user-mods.cc
mv -f .deps/user-mods.Tpo .deps/user-mods.Po
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT xmap-utils.o -MD -MP -MF .deps/xmap-utils.Tpo -c -o xmap-utils.o xmap-utils.cc
mv -f .deps/xmap-utils.Tpo .deps/xmap-utils.Po
swig -o coot_wrap_python_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK   -I../src -shadow -python -c++ ../src/coot.i && mv coot.py coot_gtk2.py
/bin/bash ../src/post-process-coot-wrap-python.sh  gtk2 coot_wrap_python_pre_gtk2.cc coot_wrap_python_gtk2.cc
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_python_gtk2.o -MD -MP -MF .deps/coot_wrap_python_gtk2.Tpo -c -o coot_wrap_python_gtk2.o coot_wrap_python_gtk2.cc
mv -f .deps/coot_wrap_python_gtk2.Tpo .deps/coot_wrap_python_gtk2.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o  -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la  		   -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lssm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib/python2.7/config -lpython2.7 -lutil  -Wl,--export-dynamic -pthread -L/usr/lib/i386-linux-gnu -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   -lglut  -lXmu -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0    -pthread -L/usr/lib/i386-linux-gnu -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   -L/usr/lib -lgsl -lgslcblas -lm     -lgoocanvas -pthread -L/usr/lib/i386-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0   
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-i386-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -Wl,--export-dynamic -pthread -pthread -pthread -pthread  ../lbg/.libs/libcoot-lidia.a -L/usr/lib -L/usr ../ligand/.libs/libcoot-ligand.a ../lidia-core/.libs/libcoot-lidia-core.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-surface/.libs/libcoot-surface.a ../surface/.libs/libccp4mg-surface.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a ../protein_db/.libs/libcoot-protein-db.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lssm -lmmdb -L/usr/lib/python2.7/config -lpython2.7 -lutil -L/usr/lib/i386-linux-gnu /usr/lib/libgtkglext-x11-1.0.so /usr/lib/libgdkglext-x11-1.0.so -lGLU -lGL -lXt -lSM -lICE /usr/lib/i386-linux-gnu/libpangox-1.0.so -lX11 -lglut -lXmu /usr/lib/libgnomecanvas-2.so /usr/lib/libart_lgpl_2.so -lgsl -lgslcblas -lgoocanvas /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/i386-linux-gnu/libatk-1.0.so /usr/lib/i386-linux-gnu/libgio-2.0.so /usr/lib/i386-linux-gnu/libpangoft2-1.0.so /usr/lib/i386-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/i386-linux-gnu/libpango-1.0.so /usr/lib/i386-linux-gnu/libfreetype.so -lfontconfig /usr/lib/i386-linux-gnu/libgobject-2.0.so /usr/lib/i386-linux-gnu/libgmodule-2.0.so /usr/lib/i386-linux-gnu/libgthread-2.0.so -lrt /usr/lib/i386-linux-gnu/libglib-2.0.so -pthread
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT density-score-by-residue-src.o -MD -MP -MF .deps/density-score-by-residue-src.Tpo -c -o density-score-by-residue-src.o density-score-by-residue-src.cc
mv -f .deps/density-score-by-residue-src.Tpo .deps/density-score-by-residue-src.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-i386-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o  ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT fix-nomenclature.o -MD -MP -MF .deps/fix-nomenclature.Tpo -c -o fix-nomenclature.o fix-nomenclature.cc
mv -f .deps/fix-nomenclature.Tpo .deps/fix-nomenclature.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/libcoot-ligand.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -lgsl -lgslcblas -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm		 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-i386-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o  ../ligand/.libs/libcoot-ligand.a -L/usr/lib -L/usr ../db-main/.libs/libcoot-db-main.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a -lgsl -lgslcblas -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT align.o -MD -MP -MF .deps/align.Tpo -c -o align.o align.cc
mv -f .deps/align.Tpo .deps/align.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-i386-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o  ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm
g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg   -DHAVE_SYS_STDTYPES_H=0      -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1   -DCOOT_USE_GTK2_INTERFACE  -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1    -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1  -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4   -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1                       -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2 -MT test-chol.o -MD -MP -MF .deps/test-chol.Tpo -c -o test-chol.o test-chol.cc
mv -f .deps/test-chol.Tpo .deps/test-chol.Po
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-i386-ubuntu-natty-python-gtk2"'  -DHAVE_SYS_STDTYPES_H=0    -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O2  -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4   -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm 
libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-i386-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o  ../coords/.libs/libcoot-coords.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm
cp coot_gtk2.py coot.py
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src'
Making all in data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
Making all in rama-data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
Making all in doc
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc'
Updating ./versuser.texi
restore=: && backupdir=".am$$" && \
	am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \
	rm -rf $backupdir && mkdir $backupdir && \
	if (makeinfo --no-split --version) >/dev/null 2>&1; then \
	  for f in coot-user-manual.info coot-user-manual.info-[0-9] coot-user-manual.info-[0-9][0-9] coot-user-manual.i[0-9] coot-user-manual.i[0-9][0-9]; do \
	    if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \
	  done; \
	else :; fi && \
	cd "$am__cwd"; \
	if makeinfo --no-split   -I . \
	 -o coot-user-manual.info coot-user-manual.texi; \
	then \
	  rc=0; \
	  CDPATH="${ZSH_VERSION+.}:" && cd .; \
	else \
	  rc=$?; \
	  CDPATH="${ZSH_VERSION+.}:" && cd . && \
	  $restore $backupdir/* `echo "./coot-user-manual.info" | sed 's|[^/]*$||'`; \
	fi; \
	rm -rf $backupdir; exit $rc
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
sed -e 's/#GTK2 //'  ./cootrc.template > cootrc
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
# make ubuntu splash screen
sh debian/make-ubuntu-splash.sh
# make a nice background image for coots-nest
convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png
touch build-arch-stamp
# Curretly nothing to do to build arch-indep packages,
# except make sure config.status is up-to-date
touch build-indep-stamp
 /usr/bin/fakeroot debian/rules binary
dh_testdir
./configure --prefix=/usr \
		--with-gtk2 \
		--with-mmdb-prefix=/usr \
		--with-ssmlib-prefix=/usr \
		--with-fftw-library-prefix=s \
		--with-gpp4 \
		--with-python \
		--with-pygtk=/usr
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for library containing strerror... none required
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking sys/stdtypes.h usability... no
checking sys/stdtypes.h presence... no
checking for sys/stdtypes.h... no
checking for gcc option to support OpenMP... -fopenmp
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GLIB... yes
checking if this is MINGW on Windows... no
checking for CCP4... yes
checking for MMDB... yes
checking for SSMLib... /usr
checking for Clipper... yes
Not using guile
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 1.3... yes
checking for GTK... yes
checking for GNOME_CANVAS... yes
checking for pkg-config... /usr/bin/pkg-config
checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0)
checking for GLUT... yes
checking for Python... checking Python.h usability... yes
checking Python.h presence... yes
checking for Python.h... yes
Cool, using Python
checking for PYGTK... yes
Good we have pygtk
checking for guile-gtk... 
checking libglade... no
checking for Goocanvas... yes
Not using database
checking for curl >= 7.9.7... FAILED
configure: WARNING: curl-config was not found
checking build type... Linux-i386-ubuntu-natty-python-gtk2
configure: creating ./config.status
config.status: creating Makefile
config.status: creating macros/Makefile
config.status: creating scheme/Makefile
config.status: creating python/Makefile
config.status: creating compat/Makefile
config.status: creating utils/Makefile
config.status: creating coot-utils/Makefile
config.status: creating protein_db/Makefile
config.status: creating ccp4mg-utils/Makefile
config.status: creating coords/Makefile
config.status: creating db-main/Makefile
config.status: creating density-contour/Makefile
config.status: creating surface/Makefile
config.status: creating coot-surface/Makefile
config.status: creating angles/Makefile
config.status: creating mini-mol/Makefile
config.status: creating skeleton/Makefile
config.status: creating ligand/Makefile
config.status: creating geometry/Makefile
config.status: creating ideal/Makefile
config.status: creating build/Makefile
config.status: creating analysis/Makefile
config.status: creating high-res/Makefile
config.status: creating tw/Makefile
config.status: creating cootaneer/Makefile
config.status: creating greg-tests/Makefile
config.status: creating python-tests/Makefile
config.status: creating lidia-core/Makefile
config.status: creating lbg/Makefile
config.status: creating doc/Makefile
config.status: creating src/Makefile
config.status: creating src/coot
config.status: creating python/coot_load_modules.py
config.status: creating data/Makefile
config.status: creating rama-data/Makefile
config.status: creating auxil/Makefile
config.status: creating auxil/catcheck/Makefile
config.status: creating auxil/rama/Makefile
config.status: creating auxil/sec-str/Makefile
config.status: creating auxil/strand-analysis/Makefile
config.status: creating auxil/vectors/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
dh_testdir
/usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT"
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
Making all in auxil
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making all in catcheck
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
Making all in rama
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
Making all in sec-str
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
Making all in strand-analysis
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
Making all in vectors
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making all in scheme
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
Making all in python
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
Making all in macros
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros'
Making all in compat
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat'
Making all in utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils'
Making all in protein_db
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
Making all in geometry
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
Making all in mini-mol
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
Making all in coot-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
Making all in surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface'
Making all in coot-surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
Making all in lidia-core
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
Making all in coords
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords'
Making all in angles
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles'
Making all in skeleton
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
Making all in ccp4mg-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
Making all in density-contour
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
Making all in db-main
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
Making all in ideal
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
Making all in ligand
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
Making all in high-res
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
Making all in build
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build'
Making all in greg-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
Making all in python-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
Making all in analysis
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
Making all in tw
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw'
Making all in lbg
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
Making all in cootaneer
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
Making all in src
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src'
Making all in data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
Making all in rama-data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
Making all in doc
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
# make ubuntu splash screen
sh debian/make-ubuntu-splash.sh
# make a nice background image for coots-nest
convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png
touch build-arch-stamp
dh_testdir
dh_testroot
dh_prep
	rm -f debian/coot.substvars
	rm -f debian/coot.*.debhelper
	rm -rf debian/coot/
	rm -f debian/coot-data.substvars
	rm -f debian/coot-data.*.debhelper
	rm -rf debian/coot-data/
	rm -f debian/coot-docs.substvars
	rm -f debian/coot-docs.*.debhelper
	rm -rf debian/coot-docs/
# Install the compiled library in debian/tmp tree
/usr/bin/make DESTDIR=/build/buildd/coot-0.7pre1+svn3470/debian/tmp install
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
Making install in auxil
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making install in catcheck
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
Making install in rama
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
Making install in sec-str
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
Making install in strand-analysis
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
Making install in vectors
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making install in scheme
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/scheme" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme"
 /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme'
 /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm prodrg-import.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
Making install in python
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python"
 /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_toolbuttons.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
Making install in macros
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros'
Making install in compat
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-getopt.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat'
Making install in utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils'
Making install in protein_db
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
test -z "/usr/share/coot/protein_db" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db"
 /usr/bin/install -c -m 644 protein.db '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
Making install in geometry
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
Making install in mini-mol
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
Making install in coot-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
Making install in surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface'
Making install in coot-surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
Making install in lidia-core
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
Making install in coords
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords'
Making install in angles
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles'
Making install in skeleton
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
Making install in ccp4mg-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
Making install in density-contour
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
Making install in db-main
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
Making install in ideal
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
Making install in ligand
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
  /bin/bash ../libtool   --mode=install /usr/bin/install -c findligand-real findwaters-real '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
libtool: install: /usr/bin/install -c findligand-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/findligand-real
libtool: install: /usr/bin/install -c findwaters-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/findwaters-real
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
 /usr/bin/install -c findwaters findligand '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
Making install in high-res
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
Making install in build
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 CalphaBuild.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build'
Making install in greg-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
Making install in python-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
Making install in analysis
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
  /bin/bash ../libtool   --mode=install /usr/bin/install -c bfactan '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
libtool: install: /usr/bin/install -c bfactan /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/bfactan
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 bfkurt.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
Making install in tw
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-tw.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw'
Making install in lbg
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
  /bin/bash ../libtool   --mode=install /usr/bin/install -c lidia '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
libtool: install: /usr/bin/install -c lidia /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/lidia
test -z "/usr/share/coot/pixmaps" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps"
 /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg Trash-hydrogens-Andy_Trash_Can.svg '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 lbg.hh wmolecule.hh rdkit-interface.hh flev-annotations.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 lbg.glade '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
Making install in cootaneer
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
Making install in src
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src'
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
  /bin/bash ../libtool   --mode=install /usr/bin/install -c coot-real density-score-by-residue-real fix-nomenclature-errors '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
libtool: install: /usr/bin/install -c coot-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/coot-real
libtool: install: /usr/bin/install -c density-score-by-residue-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/density-score-by-residue-real
libtool: install: /usr/bin/install -c fix-nomenclature-errors /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/fix-nomenclature-errors
test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin"
 /usr/bin/install -c coot density-score-by-residue '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin'
test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python"
 /usr/bin/install -c coot.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src'
Making install in data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data"
 /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
Making install in rama-data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/rama-data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data"
 /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
Making install in doc
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[3]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/info" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info"
 /usr/bin/install -c -m 644 ./coot-user-manual.info '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info'
 install-info --info-dir='/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info' '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info/coot-user-manual.info'
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
make[3]: Nothing to be done for `install-exec-am'.
if test -d ./pixmaps; then \
	  /bin/bash ./mkinstalldirs /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \
	  for pixmap in ./pixmaps/*; do \
	    if test -f $pixmap; then \
	      /usr/bin/install -c -m 644 $pixmap /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \
	    fi \
	  done \
	fi
if test -z "" ; then \
	  /usr/bin/install -c -m 644 ./syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \
	  else \
	  /usr/bin/install -c -m 644 ./windows/syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \
	fi
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk theor-helix-70.pdb '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
# Override the distributed wrappers with our own
for p in coot density-score-by-residue findligand findwaters; do \
	  m4 -I debian --define=XXX=$p debian/script.m4 > debian/tmp/usr/bin/$p ; \
	done
# decode image and convert to smaller sizes
uudecode < debian/coot-button-64x64.png.uu 
for g in 22x22 24x24 32x32 48x48; do \
	  convert -geometry $g coot-button-64x64.png coot-button-$g.png;\
	done
# install the newly generated png's in the hicolor theme
for g in 22x22 24x24 32x32 48x48 64x64; do \
	   install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\
	done
dh_install -a
	install -d debian/coot//usr
	cp -a ./debian/tmp/usr/bin debian/coot//usr/
	install -d debian/coot//usr/share
	cp -a ./debian/tmp/usr/share/icons debian/coot//usr/share/
	install -d debian/coot//usr/share/applications
	cp -a ./debian/coot.desktop debian/coot//usr/share/applications/
	cp -a ./debian/coots-nest debian/coot//usr/bin/
dh_testdir
dh_testroot
dh_installmenu
	install -d debian/coot/usr/share/menu
	install -p -m644 debian/coot.menu debian/coot/usr/share/menu/coot
	echo "# Automatically added by dh_installmenu">> debian/coot.postinst.debhelper
	sed "" /usr/share/debhelper/autoscripts/postinst-menu >> debian/coot.postinst.debhelper
	echo '# End automatically added section' >> debian/coot.postinst.debhelper
	echo "# Automatically added by dh_installmenu">> debian/coot.postrm.debhelper
	sed "" /usr/share/debhelper/autoscripts/postrm-menu >> debian/coot.postrm.debhelper
	echo '# End automatically added section' >> debian/coot.postrm.debhelper
dh_installman
	install -d debian/coot/usr/share/man/man1/
	install -p -m644 debian/bfactan.1 debian/coot/usr/share/man/man1/bfactan.1
	install -p -m644 debian/coot.1 debian/coot/usr/share/man/man1/coot.1
	install -p -m644 debian/density-score-by-residue.1 debian/coot/usr/share/man/man1/density-score-by-residue.1
	install -p -m644 debian/findligand.1 debian/coot/usr/share/man/man1/findligand.1
	install -p -m644 debian/findwaters.1 debian/coot/usr/share/man/man1/findwaters.1
	install -p -m644 debian/fix-nomenclature-errors.1 debian/coot/usr/share/man/man1/fix-nomenclature-errors.1
	install -p -m644 debian/lidia.1 debian/coot/usr/share/man/man1/lidia.1
	install -p -m644 debian/coots-nest.1 debian/coot/usr/share/man/man1/coots-nest.1
	man --recode UTF-8 ./bfactan\.1 > bfactan\.1\.new
	chmod 644 bfactan.1.new
	mv -f bfactan.1.new bfactan.1
	man --recode UTF-8 ./fix\-nomenclature\-errors\.1 > fix\-nomenclature\-errors\.1\.new
	chmod 644 fix-nomenclature-errors.1.new
	mv -f fix-nomenclature-errors.1.new fix-nomenclature-errors.1
	man --recode UTF-8 ./findligand\.1 > findligand\.1\.new
	chmod 644 findligand.1.new
	mv -f findligand.1.new findligand.1
	man --recode UTF-8 ./lidia\.1 > lidia\.1\.new
	chmod 644 lidia.1.new
	mv -f lidia.1.new lidia.1
	man --recode UTF-8 ./findwaters\.1 > findwaters\.1\.new
	chmod 644 findwaters.1.new
	mv -f findwaters.1.new findwaters.1
	man --recode UTF-8 ./coots\-nest\.1 > coots\-nest\.1\.new
	chmod 644 coots-nest.1.new
	mv -f coots-nest.1.new coots-nest.1
	man --recode UTF-8 ./coot\.1 > coot\.1\.new
	chmod 644 coot.1.new
	mv -f coot.1.new coot.1
	man --recode UTF-8 ./density\-score\-by\-residue\.1 > density\-score\-by\-residue\.1\.new
	chmod 644 density-score-by-residue.1.new
	mv -f density-score-by-residue.1.new density-score-by-residue.1
dh_installinfo
	install -d debian/coot/usr/share/info
	cp debian/tmp/usr/share/info/coot-user-manual.info debian/coot/usr/share/info
	chmod -R go=rX debian/coot/usr/share/info/
	chmod -R u\+rw debian/coot/usr/share/info/
	(grep -s -v misc:Depends debian/coot.substvars; echo "misc:Depends=dpkg (>= 1.15.4) | install-info") > debian/coot.substvars.new
	mv debian/coot.substvars.new debian/coot.substvars
dh_strip
dh_strip debug symbol extraction: disabling for PPA build
dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findwaters-real
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findligand-real
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/coot-real
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/fix-nomenclature-errors
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/bfactan
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/lidia
	strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/density-score-by-residue-real
Can't stat debian/coot-data: No such file or directory
 at /usr/bin/dh_strip.pkg-create-dbgsym line 207
Can't stat debian/coot-docs: No such file or directory
 at /usr/bin/dh_strip.pkg-create-dbgsym line 207
dh_makeshlibs
	rm -f debian/coot/DEBIAN/shlibs
	rm -f debian/coot-data/DEBIAN/shlibs
find: `debian/coot-data': No such file or directory
	rm -f debian/coot-docs/DEBIAN/shlibs
find: `debian/coot-docs': No such file or directory
dh_shlibdeps
	install -o 0 -g 0 -d debian/coot/DEBIAN
	dpkg-shlibdeps -Tdebian/coot.substvars debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/findligand-real debian/coot/usr/bin/coot-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/bfactan debian/coot/usr/bin/lidia debian/coot/usr/bin/density-score-by-residue-real
dpkg-shlibdeps: warning: dependency on libXt.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libsfftw.so.2 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libgslcblas.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libfontconfig.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libatk-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libpangocairo-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libfreetype.so.6 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libgpp4.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libICE.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libpangox-1.0.so.0 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libXmu.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libutil.so.1 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libgio-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libgmodule-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libpango-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libSM.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libgthread-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libart_lgpl_2.so.2 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
dpkg-shlibdeps: warning: dependency on libpangoft2-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols).
	install -o 0 -g 0 -d debian/coot-data/DEBIAN
	install -o 0 -g 0 -d debian/coot-docs/DEBIAN
# Now call make recursively to execute the common bits 
/usr/bin/make -f debian/rules DH_OPTIONS=-a binary-common
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
dh_testdir
dh_testroot
dh_installchangelogs ChangeLog
	install -d debian/coot/usr/share/doc/coot
	install -o 0 -g 0 -p -m644 debian/changelog debian/coot/usr/share/doc/coot/changelog.Debian
	install -o 0 -g 0 -p -m644 ChangeLog debian/coot/usr/share/doc/coot/changelog
dh_installdocs RELEASE-NOTES debian/citation.bib
	cp -a RELEASE-NOTES debian/coot/usr/share/doc/coot
	cp -a debian/citation.bib debian/coot/usr/share/doc/coot
	chown -R 0:0 debian/coot/usr/share/doc
	chmod -R go=rX debian/coot/usr/share/doc
	chmod -R u\+rw debian/coot/usr/share/doc
	install -g 0 -o 0 -m 644 -p debian/copyright debian/coot/usr/share/doc/coot/copyright
dh_installdirs
dh_compress
	cd debian/coot
	chmod a-x usr/share/info/coot-user-manual.info usr/share/man/man1/bfactan.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/man/man1/findligand.1 usr/share/man/man1/lidia.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/coot.1 usr/share/man/man1/density-score-by-residue.1 usr/share/doc/coot/changelog.Debian usr/share/doc/coot/RELEASE-NOTES usr/share/doc/coot/changelog
	gzip -9nf usr/share/info/coot-user-manual.info usr/share/man/man1/bfactan.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/man/man1/findligand.1 usr/share/man/man1/lidia.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/coot.1 usr/share/man/man1/density-score-by-residue.1 usr/share/doc/coot/changelog.Debian usr/share/doc/coot/RELEASE-NOTES usr/share/doc/coot/changelog
	cd '/build/buildd/coot-0.7pre1+svn3470'
dh_fixperms
	find debian/coot  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/coot ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/coot/usr/share/doc -type f  ! -regex 'debian/coot/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/coot/usr/share/man debian/coot/usr/man/ debian/coot/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot/usr/lib/perl5 debian/coot/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/coot/usr/bin -type f  -print0 2>/dev/null | xargs -0r chmod a+x
dh_installdeb
	printf '#!/bin/sh
set -e
' > debian/coot/DEBIAN/postinst
	cat debian/coot.postinst.debhelper >> debian/coot/DEBIAN/postinst
	chown 0:0 debian/coot/DEBIAN/postinst
	chmod 755 debian/coot/DEBIAN/postinst
	printf '#!/bin/sh
set -e
' > debian/coot/DEBIAN/postrm
	cat debian/coot.postrm.debhelper >> debian/coot/DEBIAN/postrm
	chown 0:0 debian/coot/DEBIAN/postrm
	chmod 755 debian/coot/DEBIAN/postrm
dh_gencontrol
	dpkg-gencontrol -pcoot -ldebian/changelog -Tdebian/coot.substvars -Pdebian/coot
	chmod 644 debian/coot/DEBIAN/control
	chown 0:0 debian/coot/DEBIAN/control
dh_md5sums
	(cd debian/coot >/dev/null ; find . -type f  ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/coot/DEBIAN/md5sums
	chown 0:0 debian/coot/DEBIAN/md5sums
dh_builddeb
	dpkg-deb --build debian/coot ..
INFO: pkgstriptranslations version 95
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package `coot' in `../coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.deb'.
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
# Curretly nothing to do to build arch-indep packages,
# except make sure config.status is up-to-date
touch build-indep-stamp
dh_testdir
dh_testroot
dh_prep
	rm -f debian/coot.substvars
	rm -f debian/coot.*.debhelper
	rm -rf debian/coot/
	rm -f debian/coot-data.substvars
	rm -f debian/coot-data.*.debhelper
	rm -rf debian/coot-data/
	rm -f debian/coot-docs.substvars
	rm -f debian/coot-docs.*.debhelper
	rm -rf debian/coot-docs/
	rm -rf debian/tmp
/usr/bin/make DESTDIR=/build/buildd/coot-0.7pre1+svn3470/debian/tmp install-data
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
Making install-data in auxil
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making install-data in catcheck
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
make[3]: Nothing to be done for `install-data'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck'
Making install-data in rama
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
make[3]: Nothing to be done for `install-data'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama'
Making install-data in sec-str
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
make[3]: Nothing to be done for `install-data'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str'
Making install-data in strand-analysis
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
make[3]: Nothing to be done for `install-data'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis'
Making install-data in vectors
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Nothing to be done for `install-data'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors'
make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil'
Making install-data in scheme
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
test -z "/usr/share/coot/scheme" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme"
 /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme'
 /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm prodrg-import.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme'
Making install-data in python
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python"
 /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_toolbuttons.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
Making install-data in macros
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros'
make[2]: Nothing to be done for `install-data'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros'
Making install-data in compat
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-getopt.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat'
Making install-data in utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils'
Making install-data in protein_db
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
test -z "/usr/share/coot/protein_db" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db"
 /usr/bin/install -c -m 644 protein.db '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db'
Making install-data in geometry
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry'
Making install-data in mini-mol
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol'
Making install-data in coot-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils'
Making install-data in surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface'
make[2]: Nothing to be done for `install-data'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface'
Making install-data in coot-surface
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
make[2]: Nothing to be done for `install-data'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface'
Making install-data in lidia-core
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core'
Making install-data in coords
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords'
Making install-data in angles
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles'
Making install-data in skeleton
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton'
Making install-data in ccp4mg-utils
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils'
Making install-data in density-contour
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour'
Making install-data in db-main
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main'
Making install-data in ideal
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal'
Making install-data in ligand
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand'
Making install-data in high-res
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res'
Making install-data in build
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 CalphaBuild.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build'
Making install-data in greg-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
make[2]: Nothing to be done for `install-data'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests'
Making install-data in python-tests
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
make[2]: Nothing to be done for `install-data'.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests'
Making install-data in analysis
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 bfkurt.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis'
Making install-data in tw
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 coot-tw.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw'
Making install-data in lbg
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
test -z "/usr/share/coot/pixmaps" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps"
 /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg Trash-hydrogens-Andy_Trash_Can.svg '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps'
test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include"
 /usr/bin/install -c -m 644 lbg.hh wmolecule.hh rdkit-interface.hh flev-annotations.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include'
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 lbg.glade '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg'
Making install-data in cootaneer
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer'
Making install-data in src
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src'
test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python"
 /usr/bin/install -c coot.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src'
Making install-data in data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
test -z "/usr/share/coot/data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data"
 /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
Making install-data in rama-data
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
test -z "/usr/share/coot/rama-data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data"
 /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
Making install-data in doc
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc'
test -z "/usr/share/info" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info"
 /usr/bin/install -c -m 644 ./coot-user-manual.info '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info'
 install-info --info-dir='/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info' '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info/coot-user-manual.info'
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
if test -d ./pixmaps; then \
	  /bin/bash ./mkinstalldirs /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \
	  for pixmap in ./pixmaps/*; do \
	    if test -f $pixmap; then \
	      /usr/bin/install -c -m 644 $pixmap /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \
	    fi \
	  done \
	fi
if test -z "" ; then \
	  /usr/bin/install -c -m 644 ./syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \
	  else \
	  /usr/bin/install -c -m 644 ./windows/syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \
	fi
test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot"
 /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk theor-helix-70.pdb '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
cd data; /usr/bin/make DESTDIR=../debian/tmp install
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/data" || /bin/mkdir -p "../debian/tmp/usr/share/coot/data"
 /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '../debian/tmp/usr/share/coot/data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data'
cd rama-data; /usr/bin/make DESTDIR=../debian/tmp install
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/rama-data" || /bin/mkdir -p "../debian/tmp/usr/share/coot/rama-data"
 /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '../debian/tmp/usr/share/coot/rama-data'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data'
cd python; /usr/bin/make DESTDIR=../debian/tmp install
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/usr/share/coot/python" || /bin/mkdir -p "../debian/tmp/usr/share/coot/python"
 /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_toolbuttons.py '../debian/tmp/usr/share/coot/python'
make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python'
#cd scheme; /usr/bin/make DESTDIR=../debian/tmp install
dh_install -i --exclude=scheme
	install -d debian/coot-data//usr/share
	cd './debian/tmp/usr/share/coot/..' && find 'coot' ! \( -regex .\*scheme.\* \) \( -type f -or -type l \) -exec cp --parents -dp {} /build/buildd/coot-0.7pre1+svn3470/debian/coot-data//usr/share/ \;
	cd './debian/tmp/usr/share/coot/..' && find 'coot' ! \( -regex .\*scheme.\* \) \( -type d -and -empty \) -exec cp --parents -a {} /build/buildd/coot-0.7pre1+svn3470/debian/coot-data//usr/share/ \;
	cp -a ./debian/pdbget.sh debian/coot-data//usr/share/coot/
chmod 755 debian/coot-data/usr/share/coot/pdbget.sh
dh_testdir
dh_testroot
# Now call make recursively to execute the common bits 
/usr/bin/make -f debian/rules DH_OPTIONS=-i binary-common
make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470'
dh_testdir
dh_testroot
dh_installchangelogs ChangeLog
	install -d debian/coot-data/usr/share/doc/coot-data
	install -o 0 -g 0 -p -m644 debian/changelog debian/coot-data/usr/share/doc/coot-data/changelog.Debian
	install -o 0 -g 0 -p -m644 ChangeLog debian/coot-data/usr/share/doc/coot-data/changelog
	install -d debian/coot-docs/usr/share/doc/coot-docs
	install -o 0 -g 0 -p -m644 debian/changelog debian/coot-docs/usr/share/doc/coot-docs/changelog.Debian
	install -o 0 -g 0 -p -m644 ChangeLog debian/coot-docs/usr/share/doc/coot-docs/changelog
dh_installdocs RELEASE-NOTES debian/citation.bib
	cp -a RELEASE-NOTES debian/coot-data/usr/share/doc/coot-data
	cp -a debian/citation.bib debian/coot-data/usr/share/doc/coot-data
	chown -R 0:0 debian/coot-data/usr/share/doc
	chmod -R go=rX debian/coot-data/usr/share/doc
	chmod -R u\+rw debian/coot-data/usr/share/doc
	install -g 0 -o 0 -m 644 -p debian/copyright debian/coot-data/usr/share/doc/coot-data/copyright
	cd 'doc/..' && find 'doc' \( -type f -or -type l \) -and ! -empty -exec cp --parents -dp {} /build/buildd/coot-0.7pre1+svn3470/debian/coot-docs/usr/share/doc/coot-docs \;
	chown -R 0:0 debian/coot-docs/usr/share/doc
	chmod -R go=rX debian/coot-docs/usr/share/doc
	chmod -R u\+rw debian/coot-docs/usr/share/doc
	install -g 0 -o 0 -m 644 -p debian/copyright debian/coot-docs/usr/share/doc/coot-docs/copyright
dh_installdirs
	install -d debian/coot-data/usr/share/coot/reference-structures
dh_compress
	cd debian/coot-data
	chmod a-x usr/share/doc/coot-data/changelog.Debian usr/share/doc/coot-data/RELEASE-NOTES usr/share/doc/coot-data/changelog
	gzip -9nf usr/share/doc/coot-data/changelog.Debian usr/share/doc/coot-data/RELEASE-NOTES usr/share/doc/coot-data/changelog
	cd '/build/buildd/coot-0.7pre1+svn3470'
	cd debian/coot-docs
	chmod a-x usr/share/doc/coot-docs/doc/Makefile usr/share/doc/coot-docs/doc/derivatives-part.tex usr/share/doc/coot-docs/doc/coot-user-manual.info usr/share/doc/coot-docs/doc/coot-reference-manual.texi usr/share/doc/coot-docs/doc/Makefile.in usr/share/doc/coot-docs/doc/crib-sheet.tex usr/share/doc/coot-docs/doc/coot.tex usr/share/doc/coot-docs/doc/coot-user-manual.texi usr/share/doc/coot-docs/doc/coot-plain-2.ps usr/share/doc/coot-docs/doc/tutorial.tex usr/share/doc/coot-docs/doc/mdate-sh usr/share/doc/coot-docs/doc/reference.tex usr/share/doc/coot-docs/doc/coot-plain-2.eps usr/share/doc/coot-docs/doc/3-amino-benzamide-2.eps usr/share/doc/coot-docs/doc/texinfo.tex usr/share/doc/coot-docs/doc/function-filter.scsh usr/share/doc/coot-docs/doc/derivatives.tex usr/share/doc/coot-docs/changelog.Debian usr/share/doc/coot-docs/changelog
	gzip -9nf usr/share/doc/coot-docs/doc/Makefile usr/share/doc/coot-docs/doc/derivatives-part.tex usr/share/doc/coot-docs/doc/coot-user-manual.info usr/share/doc/coot-docs/doc/coot-reference-manual.texi usr/share/doc/coot-docs/doc/Makefile.in usr/share/doc/coot-docs/doc/crib-sheet.tex usr/share/doc/coot-docs/doc/coot.tex usr/share/doc/coot-docs/doc/coot-user-manual.texi usr/share/doc/coot-docs/doc/coot-plain-2.ps usr/share/doc/coot-docs/doc/tutorial.tex usr/share/doc/coot-docs/doc/mdate-sh usr/share/doc/coot-docs/doc/reference.tex usr/share/doc/coot-docs/doc/coot-plain-2.eps usr/share/doc/coot-docs/doc/3-amino-benzamide-2.eps usr/share/doc/coot-docs/doc/texinfo.tex usr/share/doc/coot-docs/doc/function-filter.scsh usr/share/doc/coot-docs/doc/derivatives.tex usr/share/doc/coot-docs/changelog.Debian usr/share/doc/coot-docs/changelog
	cd '/build/buildd/coot-0.7pre1+svn3470'
dh_fixperms
	find debian/coot-data  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/coot-data ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/coot-data/usr/share/doc -type f  ! -regex 'debian/coot-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/coot-data/usr/share/man debian/coot-data/usr/man/ debian/coot-data/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-data/usr/lib/perl5 debian/coot-data/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/coot-docs  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/coot-docs ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/coot-docs/usr/share/doc -type f  ! -regex 'debian/coot-docs/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/coot-docs/usr/share/man debian/coot-docs/usr/man/ debian/coot-docs/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/coot-docs/usr/lib/perl5 debian/coot-docs/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
dh_installdeb
	install -o 0 -g 0 -d debian/coot-data/DEBIAN
	sed s/#DEBHELPER#// < debian/coot-data.postinst > debian/coot-data/DEBIAN/postinst
	chown 0:0 debian/coot-data/DEBIAN/postinst
	chmod 755 debian/coot-data/DEBIAN/postinst
	sed s/#DEBHELPER#// < debian/coot-data.postrm > debian/coot-data/DEBIAN/postrm
	chown 0:0 debian/coot-data/DEBIAN/postrm
	chmod 755 debian/coot-data/DEBIAN/postrm
	install -o 0 -g 0 -d debian/coot-docs/DEBIAN
dh_gencontrol
	echo misc:Depends= >> debian/coot-data.substvars
	dpkg-gencontrol -pcoot-data -ldebian/changelog -Tdebian/coot-data.substvars -Pdebian/coot-data
	chmod 644 debian/coot-data/DEBIAN/control
	chown 0:0 debian/coot-data/DEBIAN/control
	echo misc:Depends= >> debian/coot-docs.substvars
	dpkg-gencontrol -pcoot-docs -ldebian/changelog -Tdebian/coot-docs.substvars -Pdebian/coot-docs
	chmod 644 debian/coot-docs/DEBIAN/control
	chown 0:0 debian/coot-docs/DEBIAN/control
dh_md5sums
	(cd debian/coot-data >/dev/null ; find . -type f  ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/coot-data/DEBIAN/md5sums
	chown 0:0 debian/coot-data/DEBIAN/md5sums
	(cd debian/coot-docs >/dev/null ; find . -type f  ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/coot-docs/DEBIAN/md5sums
	chown 0:0 debian/coot-docs/DEBIAN/md5sums
dh_builddeb
	dpkg-deb --build debian/coot-data ..
INFO: pkgstriptranslations version 95
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package `coot-data' in `../coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb'.
	dpkg-deb --build debian/coot-docs ..
INFO: pkgstriptranslations version 95
INFO: Disabling pkgstriptranslations for PPA build
INFO: Disabling pkgmaintainermangler for PPA build
INFO: Disabling pkgstripfiles for PPA build
dpkg-deb: building package `coot-docs' in `../coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb'.
make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470'
 dpkg-genchanges -b -mUbuntu Build Daemon <buildd@lemon.ppa> >../coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.changes
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build coot-0.7pre1+svn3470
dpkg-buildpackage: binary only upload (no source included)
******************************************************************************
Build finished at 20110414-1327

chroot-autobuild/build/buildd/coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.deb:
 new debian package, version 2.0.
 size 6562838 bytes: control archive= 2201 bytes.
    1547 bytes,    18 lines      control              
    2168 bytes,    33 lines      md5sums              
     185 bytes,     7 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
 Package: coot
 Version: 0.7pre1+svn3470-0ubuntu1~natty1
 Architecture: i386
 Maintainer: Morten Kjeldgaard <mok0@ubuntu.com>
 Installed-Size: 15312
 Depends: freeglut3, libart-2.0-2 (>= 2.3.18), libatk1.0-0 (>= 1.12.4), libc6 (>= 2.4), libcairo2 (>= 1.2.4), libclipper2, libfontconfig1 (>= 2.8.0), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgdk-pixbuf2.0-0 (>= 2.22.0), libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libgnomecanvas2-0 (>= 2.11.1), libgomp1 (>= 4.2.1), libgoocanvas3 (>= 0.15), libgpp4-0 (>= 1.0.4), libgsl0ldbl (>= 1.9), libgtk2.0-0 (>= 2.16.0), libgtkglext1, libice6 (>= 1:1.0.0), libmmdb0 (>= 1.23.2.1), libpango1.0-0 (>= 1.14.0), libpng12-0 (>= 1.2.13-4), libpython2.7 (>= 2.7), libsm6, libssm0 (>= 0.1), libstdc++6 (>= 4.5), libx11-6, libxmu6, libxt6, sfftw2, zlib1g (>= 1:1.1.4), dpkg (>= 1.15.4) | install-info, coot-data, refmac-dict, python-vte, python
 Suggests: coot-docs
 Section: science
 Priority: optional
 Homepage: http://www.biop.ox.ac.uk/coot/
 Description: model building program for macromolecular crystallography
  Coot is a program for constructing atomic models of macromolecules
  from x-ray diffraction data. Coot displays electron density maps and
  molecular models and allows model manipulations such as idealization,
  refinement, manual rotation/translation, rigid-body fitting, ligand
  search, solvation, mutations, rotamers. Validation tools such as
  Ramachandran and geometry plots are available to the user. This
  package provides a Coot build with embedded Python support.

chroot-autobuild/build/buildd/coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb:
 new debian package, version 2.0.
 size 10880668 bytes: control archive= 7916 bytes.
     445 bytes,    13 lines      control              
   16009 bytes,   221 lines      md5sums              
    1565 bytes,    54 lines   *  postinst             #!/bin/sh
    1023 bytes,    51 lines   *  postrm               #!/bin/sh
 Package: coot-data
 Source: coot
 Version: 0.7pre1+svn3470-0ubuntu1~natty1
 Architecture: all
 Maintainer: Morten Kjeldgaard <mok0@ubuntu.com>
 Installed-Size: 55732
 Section: science
 Priority: optional
 Homepage: http://www.biop.ox.ac.uk/coot/
 Description: various data files needed by Coot
  Coot is an interactive program for fitting atomic models to
  crystallographic electron density maps. This package contains various
  data files needed by Coot.

chroot-autobuild/build/buildd/coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb:
 new debian package, version 2.0.
 size 566036 bytes: control archive= 1187 bytes.
     434 bytes,    13 lines      control              
    1909 bytes,    24 lines      md5sums              
 Package: coot-docs
 Source: coot
 Version: 0.7pre1+svn3470-0ubuntu1~natty1
 Architecture: all
 Maintainer: Morten Kjeldgaard <mok0@ubuntu.com>
 Installed-Size: 680
 Section: science
 Priority: optional
 Homepage: http://www.biop.ox.ac.uk/coot/
 Description: documentation for Coot
  Coot is an interactive program for fitting atomic models to
  crystallographic electron density maps. This package contains
  documentation source files for Coot.

chroot-autobuild/build/buildd/coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.deb:
drwxr-xr-x root/root         0 2011-04-14 13:26 ./
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/doc/coot/
-rw-r--r-- root/root     21920 2011-04-12 10:15 ./usr/share/doc/coot/RELEASE-NOTES.gz
-rw-r--r-- root/root      1203 2011-04-14 12:55 ./usr/share/doc/coot/changelog.Debian.gz
-rw-r--r-- root/root     56743 2011-04-12 10:15 ./usr/share/doc/coot/changelog.gz
-rw-r--r-- root/root     44439 2011-04-14 12:55 ./usr/share/doc/coot/copyright
-rw-r--r-- root/root       919 2011-04-14 12:55 ./usr/share/doc/coot/citation.bib
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/22x22/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/22x22/apps/
-rwxr-xr-x root/root      2565 2011-04-14 13:26 ./usr/share/icons/hicolor/22x22/apps/coot.png
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/48x48/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/48x48/apps/
-rwxr-xr-x root/root      5621 2011-04-14 13:26 ./usr/share/icons/hicolor/48x48/apps/coot.png
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/64x64/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/64x64/apps/
-rwxr-xr-x root/root      8476 2011-04-14 13:26 ./usr/share/icons/hicolor/64x64/apps/coot.png
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/24x24/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/24x24/apps/
-rwxr-xr-x root/root      2781 2011-04-14 13:26 ./usr/share/icons/hicolor/24x24/apps/coot.png
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/32x32/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/icons/hicolor/32x32/apps/
-rwxr-xr-x root/root      3647 2011-04-14 13:26 ./usr/share/icons/hicolor/32x32/apps/coot.png
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/info/
-rw-r--r-- root/root     62002 2011-04-14 13:26 ./usr/share/info/coot-user-manual.info.gz
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/menu/
-rw-r--r-- root/root       115 2011-04-14 12:55 ./usr/share/menu/coot
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/man/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/man/man1/
-rw-r--r-- root/root       487 2011-04-14 13:26 ./usr/share/man/man1/coots-nest.1.gz
-rw-r--r-- root/root       354 2011-04-14 13:26 ./usr/share/man/man1/lidia.1.gz
-rw-r--r-- root/root       386 2011-04-14 13:26 ./usr/share/man/man1/fix-nomenclature-errors.1.gz
-rw-r--r-- root/root       367 2011-04-14 13:26 ./usr/share/man/man1/bfactan.1.gz
-rw-r--r-- root/root      1007 2011-04-14 13:26 ./usr/share/man/man1/findligand.1.gz
-rw-r--r-- root/root       655 2011-04-14 13:26 ./usr/share/man/man1/density-score-by-residue.1.gz
-rw-r--r-- root/root       867 2011-04-14 13:26 ./usr/share/man/man1/findwaters.1.gz
-rw-r--r-- root/root      3058 2011-04-14 13:26 ./usr/share/man/man1/coot.1.gz
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/applications/
-rw-r--r-- root/root       145 2011-04-14 12:55 ./usr/share/applications/coot.desktop
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/bin/
-rwxr-xr-x root/root   1051380 2011-04-14 13:26 ./usr/bin/findwaters-real
-rwxr-xr-x root/root   1370096 2011-04-14 13:26 ./usr/bin/findligand-real
-rwxr-xr-x root/root   9580164 2011-04-14 13:26 ./usr/bin/coot-real
-rwxr-xr-x root/root   1476436 2011-04-14 13:26 ./usr/bin/fix-nomenclature-errors
-rwxr-xr-x root/root    297172 2011-04-14 13:26 ./usr/bin/bfactan
-rwxr-xr-x root/root    637340 2011-04-14 13:26 ./usr/bin/lidia
-rwxr-xr-x root/root      1266 2011-04-14 13:26 ./usr/bin/findligand
-rwxr-xr-x root/root      1266 2011-04-14 13:26 ./usr/bin/findwaters
-rwxr-xr-x root/root      1260 2011-04-14 13:26 ./usr/bin/coot
-rwxr-xr-x root/root      7033 2011-04-14 12:55 ./usr/bin/coots-nest
-rwxr-xr-x root/root    801468 2011-04-14 13:26 ./usr/bin/density-score-by-residue-real
-rwxr-xr-x root/root      1280 2011-04-14 13:26 ./usr/bin/density-score-by-residue

chroot-autobuild/build/buildd/coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb:
drwxr-xr-x root/root         0 2011-04-14 13:27 ./
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/doc/
drwxr-xr-x root/root         0 2011-04-14 13:27 ./usr/share/doc/coot-data/
-rw-r--r-- root/root     21920 2011-04-12 10:15 ./usr/share/doc/coot-data/RELEASE-NOTES.gz
-rw-r--r-- root/root      1203 2011-04-14 12:55 ./usr/share/doc/coot-data/changelog.Debian.gz
-rw-r--r-- root/root     56743 2011-04-12 10:15 ./usr/share/doc/coot-data/changelog.gz
-rw-r--r-- root/root     44439 2011-04-14 12:55 ./usr/share/doc/coot-data/copyright
-rw-r--r-- root/root       919 2011-04-14 12:55 ./usr/share/doc/coot-data/citation.bib
drwxr-xr-x root/root         0 2011-04-14 13:27 ./usr/share/coot/
drwxr-xr-x root/root         0 2011-04-14 13:26 ./usr/share/coot/pixmaps/
-rw-r--r-- root/root      7306 2011-04-14 13:26 ./usr/share/coot/pixmaps/scroll-wheel.svg
-rw-r--r-- root/root      4054 2011-04-14 13:26 ./usr/share/coot/pixmaps/4-c.svg
-rw-r--r-- root/root       810 2011-04-14 13:26 ./usr/share/coot/pixmaps/appointment-new.png
-rw-r--r-- root/root      2753 2011-04-14 13:26 ./usr/share/coot/pixmaps/phenixed.svg
-rw-r--r-- root/root     11156 2011-04-14 13:26 ./usr/share/coot/pixmaps/kevin-orig.jpg
-rw-r--r-- root/root    938102 2011-04-14 13:26 ./usr/share/coot/pixmaps/coot-0.5.xpm
-rw-r--r-- root/root     12111 2011-04-14 13:26 ./usr/share/coot/pixmaps/calculate-ghosts.svg
-rw-r--r-- root/root       828 2011-04-14 13:26 ./usr/share/coot/pixmaps/smiles.png
-rw-r--r-- root/root       355 2011-04-14 13:26 ./usr/share/coot/pixmaps/sequence-view.png
-rw-r--r-- root/root      5441 2011-04-14 13:26 ./usr/share/coot/pixmaps/stereo-out.svg
-rw-r--r-- root/root      1679 2011-04-14 13:26 ./usr/share/coot/pixmaps/reset-view.png
-rw-r--r-- root/root      2849 2011-04-14 13:26 ./usr/share/coot/pixmaps/atom-at-pointer.svg
-rw-r--r-- root/root      6608 2011-04-14 13:26 ./usr/share/coot/pixmaps/6-c-arom.svg
-rw-r--r-- root/root   1176873 2011-04-14 13:26 ./usr/share/coot/pixmaps/coot-0.6-pre-1.xpm
-rw-r--r-- root/root      4000 2011-04-14 13:26 ./usr/share/coot/pixmaps/change-chain-id.svg
-rw-r--r-- root/root       561 2011-04-14 13:26 ./usr/share/coot/pixmaps/add-alt-conf.png
-rw-r--r-- root/root     13043 2011-04-14 13:26 ./usr/share/coot/pixmaps/Trash-hydrogens-Andy_Trash_Can.svg
-rw-r--r-- root/root       626 2011-04-14 13:26 ./usr/share/coot/pixmaps/add-peptide-1.png
-rw-r--r-- root/root       687 2011-04-14 13:26 ./usr/share/coot/pixmaps/panel-screenshot.png
-rw-r--r-- root/root      5202 2011-04-14 13:26 ./usr/share/coot/pixmaps/geom.svg
-rw-r--r-- root/root       822 2011-04-14 13:26 ./usr/share/coot/pixmaps/edit-chi.png
-rw-r--r-- root/root       648 2011-04-14 13:26 ./usr/share/coot/pixmaps/auto-fit-rotamer.png
-rw-r--r-- root/root      8765 2011-04-14 13:26 ./usr/share/coot/pixmaps/add-peptide-1.svg
-rw-r--r-- root/root      4379 2011-04-14 13:26 ./usr/share/coot/pixmaps/coot-icon.png
-rw-r--r-- root/root      4020 2011-04-14 13:26 ./usr/share/coot/pixmaps/aniso-atom.svg
-rw-r--r-- root/root      5990 2011-04-14 13:26 ./usr/share/coot/pixmaps/water-diff-map.svg
-rw-r--r-- root/root       870 2011-04-14 13:26 ./usr/share/coot/pixmaps/residue-info.png
-rw-r--r-- root/root      3242 2011-04-14 13:26 ./usr/share/coot/pixmaps/azerbaijan.svg
-rw-r--r-- root/root       246 2011-04-14 13:26 ./usr/share/coot/pixmaps/gtk-font.png
-rw-r--r-- root/root      6477 2011-04-14 13:26 ./usr/share/coot/pixmaps/merge-molecules.svg
-rw-r--r-- root/root      2600 2011-04-14 13:26 ./usr/share/coot/pixmaps/generic-display-objects.svg
-rw-r--r-- root/root       561 2011-04-14 13:26 ./usr/share/coot/pixmaps/coot-favicon.png
-rw-r--r-- root/root       752 2011-04-14 13:26 ./usr/share/coot/pixmaps/aniso-atom.png
-rw-r--r-- root/root    108372 2011-04-14 13:26 ./usr/share/coot/pixmaps/secondary-structure.svg
-rw-r--r-- root/root      5999 2011-04-14 13:26 ./usr/share/coot/pixmaps/mutate-auto-fit.svg
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chroot-autobuild/build/buildd/coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb:
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-rw-r--r-- root/root     44439 2011-04-14 12:55 ./usr/share/doc/coot-docs/copyright

coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.changes:
Format: 1.8
Date: Thu, 14 Apr 2011 12:37:54 +0200
Source: coot
Binary: coot coot-data coot-docs
Architecture: i386 all
Version: 0.7pre1+svn3470-0ubuntu1~natty1
Distribution: natty
Urgency: low
Maintainer: Ubuntu Build Daemon <buildd@lemon.ppa>
Changed-By: Morten Kjeldgaard <mok0@ubuntu.com>
Description: 
 coot       - model building program for macromolecular crystallography
 coot-data  - various data files needed by Coot
 coot-docs  - documentation for Coot
Changes: 
 coot (0.7pre1+svn3470-0ubuntu1~natty1) natty; urgency=low
 .
   * Build for natty
Checksums-Sha1: 
 1a7ecf703c93f94b6aff7cb97c92eecb5ddab28b 6562838 coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.deb
 6ca23ca83540fe0fac87257f4a11cc34ef7fca06 10880668 coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb
 7f2544664c42e95d0343bc3d9c358545cae35eb1 566036 coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb
Checksums-Sha256: 
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 05687ee0a521ef2d677ad67e8c8257e05f9519f79d412b217432721acad295f6 10880668 coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb
 5588ec6d79e0d5e2c062cefc4049c0cb7e55bf770d0643c3bf459fbcf7f15dbe 566036 coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb
Files: 
 df75b628275a83be39a3ab38b5df26a7 6562838 science optional coot_0.7pre1+svn3470-0ubuntu1~natty1_i386.deb
 069104e586fb38cd0878e55b261874d7 10880668 science optional coot-data_0.7pre1+svn3470-0ubuntu1~natty1_all.deb
 ec923ff6fc2c59bf0a2c433c9568e480 566036 science optional coot-docs_0.7pre1+svn3470-0ubuntu1~natty1_all.deb

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Finished at 20110414-1327
Build needed 00:32:01, 1694288k disk space
Can't open average time db /var/debbuild/avg-build-times
Can't open average space db /var/debbuild/avg-build-space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '106c6649541ec515c09e93d54e99d7ea57d9365b']
Scanning for processes to kill in build /home/buildd/build-106c6649541ec515c09e93d54e99d7ea57d9365b/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '106c6649541ec515c09e93d54e99d7ea57d9365b']
Unmounting chroot for build 106c6649541ec515c09e93d54e99d7ea57d9365b...
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '106c6649541ec515c09e93d54e99d7ea57d9365b']
Removing build 106c6649541ec515c09e93d54e99d7ea57d9365b