RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055', '/home/buildd/filecache-default/dda6982577be1aa7e8febd1618da289bc7b08991'] Uncompressing the tarball... Synching the system clock with the buildd NTP service... 22 Apr 10:21:58 ntpdate[3400]: step time server 10.211.37.1 offset -673455.574831 sec Unpacking chroot for build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055'] Mounting chroot for build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055', 'deb http://ppa.launchpad.net/mok0/ppa/ubuntu natty main', 'deb http://ftpmaster.internal/ubuntu natty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu natty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu natty-updates main restricted universe multiverse'] Overriding sources.list in build-13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055', 'amd64'] Updating debian chroot for build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055 Get:1 http://ftpmaster.internal natty Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/multiverse Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/restricted Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en Get:2 http://ftpmaster.internal natty-security Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty-security/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-security/multiverse Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-security/restricted Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-security/universe Translation-en Get:3 http://ftpmaster.internal natty-updates Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty-updates/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-updates/multiverse Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-updates/restricted Translation-en Ign http://ftpmaster.internal/ubuntu/ natty-updates/universe Translation-en Get:4 http://ftpmaster.internal natty Release [39.8 kB] Get:5 http://ftpmaster.internal natty-security Release [23.2 kB] Get:6 http://ftpmaster.internal natty-updates Release [23.2 kB] Get:7 http://ftpmaster.internal natty/main amd64 Packages [1556 kB] Get:8 http://ftpmaster.internal natty/restricted amd64 Packages [8980 B] Get:9 http://ftpmaster.internal natty/universe amd64 Packages [6003 kB] Get:10 http://ppa.launchpad.net natty Release.gpg [316 B] Ign http://ppa.launchpad.net/mok0/ppa/ubuntu/ natty/main Translation-en Get:11 http://ppa.launchpad.net natty Release [9738 B] Ign http://ppa.launchpad.net natty Release Get:12 http://ppa.launchpad.net natty/main amd64 Packages [607 B] Get:13 http://ftpmaster.internal natty/multiverse amd64 Packages [180 kB] Get:14 http://ftpmaster.internal natty-security/main amd64 Packages [14 B] Get:15 http://ftpmaster.internal natty-security/restricted amd64 Packages [14 B] Get:16 http://ftpmaster.internal natty-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal natty-security/multiverse amd64 Packages [14 B] Get:18 http://ftpmaster.internal natty-updates/main amd64 Packages [14 B] Get:19 http://ftpmaster.internal natty-updates/restricted amd64 Packages [14 B] Get:20 http://ftpmaster.internal natty-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal natty-updates/multiverse amd64 Packages [14 B] Fetched 7846 kB in 4s (1710 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net natty Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 4612340C1DC81A57 Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libpam-modules-bin multiarch-support The following packages will be upgraded: adduser apt apt-transport-https base-files bash binutils bsdutils busybox-initramfs bzip2 coreutils cpio cpp cpp-4.5 debconf debconf-i18n dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-4.5 gcc gcc-4.5 gcc-4.5-base gnupg gpgv initramfs-tools initramfs-tools-bin initscripts klibc-utils libacl1 libattr1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libdb4.8 libdbus-1-3 libdpkg-perl libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 libdrm2 libgcc1 libgcrypt11 libgdbm3 libglib2.0-0 libgmp3c2 libgmpxx4ldbl libgnutls26 libgomp1 libgpg-error0 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libklibc libkrb5-3 libkrb5support0 libldap-2.4-2 libmpc2 libmpfr4 libnih-dbus1 libnih1 libpam-modules libpam-runtime libpam0g libpcre3 libplymouth2 libpng12-0 libreadline6 libselinux1 libss2 libssl0.9.8 libstdc++6 libstdc++6-4.5-dev libtasn1-3 libudev0 libusb-0.1-4 libuuid1 linux-libc-dev locales login lsb-base make module-init-tools mount mountall netbase openssl passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler plymouth procps python2.7-minimal readline-common sysv-rc sysvinit-utils tzdata udev upstart util-linux zlib1g 110 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 67.6 MB of archives. After this operation, 569 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libnih-dbus1 libnih1 libc6-dev libc-dev-bin libc-bin libc6 multiarch-support libdbus-1-3 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 cpp-4.5 libstdc++6-4.5-dev g++-4.5 gcc-4.5 libstdc++6 libgmp3c2 libgmpxx4ldbl libmpfr4 libmpc2 zlib1g binutils debconf-i18n debconf tzdata libpam0g libselinux1 libpam-modules-bin libpam-modules base-files bash coreutils dpkg e2fslibs e2fsprogs findutils login mount perl-modules bzip2 libbz2-1.0 libdb4.8 libgdbm3 perl perl-base lsb-base sysvinit-utils sysv-rc passwd initscripts libudev0 libattr1 libacl1 libpcre3 libglib2.0-0 libusb-0.1-4 module-init-tools initramfs-tools initramfs-tools-bin klibc-utils libklibc busybox-initramfs cpio procps adduser util-linux udev libdrm2 libdrm-intel1 libdrm-nouveau1a libdrm-radeon1 plymouth libpng12-0 libplymouth2 mountall upstart bsdutils libuuid1 libblkid1 libcomerr2 libss2 libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 libkeyutils1 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 apt libpam-runtime libssl0.9.8 python2.7-minimal readline-common libreadline6 gpgv gnupg netbase locales apt-transport-https libldap-2.4-2 openssl cpp dpkg-dev libdpkg-perl make gcc g++ pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main libnih-dbus1 amd64 1.0.3-1ubuntu1 [14.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main libnih1 amd64 1.0.3-1ubuntu1 [52.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main libc6-dev amd64 2.13-0ubuntu13 [2630 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main libc-dev-bin amd64 2.13-0ubuntu13 [89.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main libc-bin amd64 2.13-0ubuntu13 [994 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libc6 amd64 2.13-0ubuntu13 [4138 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main multiarch-support amd64 2.13-0ubuntu13 [8130 B] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libdbus-1-3 amd64 1.4.6-1ubuntu6 [140 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev amd64 2.6.38-8.42 [792 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main libgomp1 amd64 4.5.2-8ubuntu3 [25.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5-base amd64 4.5.2-8ubuntu3 [13.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main libgcc1 amd64 1:4.5.2-8ubuntu3 [42.3 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.5 amd64 4.5.2-8ubuntu3 [4603 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.5-dev amd64 4.5.2-8ubuntu3 [1552 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main g++-4.5 amd64 4.5.2-8ubuntu3 [6514 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5 amd64 4.5.2-8ubuntu3 [7202 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6 amd64 4.5.2-8ubuntu3 [326 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libgmp3c2 amd64 2:4.3.2+dfsg-1ubuntu3 [301 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main libgmpxx4ldbl amd64 2:4.3.2+dfsg-1ubuntu3 [10.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main libmpfr4 amd64 3.0.0-7 [188 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main libmpc2 amd64 0.9-1 [39.7 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main zlib1g amd64 1:1.2.3.4.dfsg-3ubuntu3 [53.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main binutils amd64 2.21.0.20110327-2ubuntu2 [2524 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main debconf-i18n all 1.5.36ubuntu4 [208 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main debconf all 1.5.36ubuntu4 [140 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main tzdata all 2011e-1 [772 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main libpam0g amd64 1.1.2-2ubuntu7 [54.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libselinux1 amd64 2.0.96-1ubuntu2 [64.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules-bin amd64 1.1.2-2ubuntu7 [43.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules amd64 1.1.2-2ubuntu7 [277 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main base-files amd64 5.0.0ubuntu27 [54.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main bash amd64 4.2-0ubuntu3 [611 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main coreutils amd64 8.5-1ubuntu6 [2289 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main dpkg amd64 1.16.0~ubuntu6 [1916 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main e2fslibs amd64 1.41.14-1ubuntu3 [148 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main e2fsprogs amd64 1.41.14-1ubuntu3 [829 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main findutils amd64 4.4.2-1ubuntu3 [395 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main login amd64 1:4.1.4.2+svn3283-3ubuntu1 [287 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main mount amd64 2.17.2-9.1ubuntu4 [133 kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/main perl-modules all 5.10.1-17ubuntu4 [3442 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main bzip2 amd64 1.0.5-6ubuntu1 [38.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main libbz2-1.0 amd64 1.0.5-6ubuntu1 [34.1 kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main libdb4.8 amd64 4.8.30-5ubuntu2 [678 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main libgdbm3 amd64 1.8.3-9ubuntu1 [35.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main perl amd64 5.10.1-17ubuntu4 [4460 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main perl-base amd64 5.10.1-17ubuntu4 [1015 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main lsb-base all 4.0-0ubuntu10 [10.8 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main sysvinit-utils amd64 2.87dsf-4ubuntu23 [55.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main sysv-rc all 2.87dsf-4ubuntu23 [36.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main passwd amd64 1:4.1.4.2+svn3283-3ubuntu1 [953 kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main initscripts amd64 2.87dsf-4ubuntu23 [33.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main libudev0 amd64 167-0ubuntu3 [28.8 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main libattr1 amd64 1:2.4.44-2ubuntu2 [11.3 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main libacl1 amd64 2.2.49-4ubuntu2 [18.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libpcre3 amd64 8.12-3ubuntu2 [150 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-0 amd64 2.28.5-0ubuntu1 [1117 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main libusb-0.1-4 amd64 2:0.1.12-17 [17.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main module-init-tools amd64 3.12-1ubuntu6 [92.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main initramfs-tools all 0.98.8ubuntu3 [52.6 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main initramfs-tools-bin amd64 0.98.8ubuntu3 [11.5 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main klibc-utils amd64 1.5.20-1ubuntu5 [177 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main libklibc amd64 1.5.20-1ubuntu5 [44.6 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs amd64 1:1.17.1-10ubuntu1 [178 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main cpio amd64 2.11-7ubuntu1 [116 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main procps amd64 1:3.2.8-10ubuntu3 [234 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main adduser all 3.112+nmu1ubuntu5 [99.3 kB] Get:67 http://ftpmaster.internal/ubuntu/ natty/main util-linux amd64 2.17.2-9.1ubuntu4 [518 kB] Get:68 http://ftpmaster.internal/ubuntu/ natty/main udev amd64 167-0ubuntu3 [424 kB] Get:69 http://ftpmaster.internal/ubuntu/ natty/main libdrm2 amd64 2.4.23-1ubuntu6 [25.1 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main libdrm-intel1 amd64 2.4.23-1ubuntu6 [26.3 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main libdrm-nouveau1a amd64 2.4.23-1ubuntu6 [15.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ natty/main libdrm-radeon1 amd64 2.4.23-1ubuntu6 [16.0 kB] Get:73 http://ftpmaster.internal/ubuntu/ natty/main plymouth amd64 0.8.2-2ubuntu21 [126 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main libpng12-0 amd64 1.2.44-1ubuntu3 [131 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main libplymouth2 amd64 0.8.2-2ubuntu21 [91.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main mountall amd64 2.25 [49.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/main upstart amd64 0.9.4-1ubuntu1 [284 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main bsdutils amd64 1:2.17.2-9.1ubuntu4 [34.3 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main libuuid1 amd64 2.17.2-9.1ubuntu4 [13.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ natty/main libblkid1 amd64 2.17.2-9.1ubuntu4 [63.2 kB] Get:81 http://ftpmaster.internal/ubuntu/ natty/main libcomerr2 amd64 1.41.14-1ubuntu3 [53.7 kB] Get:82 http://ftpmaster.internal/ubuntu/ natty/main libss2 amd64 1.41.14-1ubuntu3 [58.8 kB] Get:83 http://ftpmaster.internal/ubuntu/ natty/main libgpg-error0 amd64 1.10-0.2ubuntu1 [14.5 kB] Get:84 http://ftpmaster.internal/ubuntu/ natty/main libgcrypt11 amd64 1.4.6-4ubuntu2 [269 kB] Get:85 http://ftpmaster.internal/ubuntu/ natty/main libtasn1-3 amd64 2.7-1ubuntu1 [43.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ natty/main libgnutls26 amd64 2.8.6-1ubuntu2 [406 kB] Get:87 http://ftpmaster.internal/ubuntu/ natty/main libkeyutils1 amd64 1.4-4ubuntu2 [6694 B] Get:88 http://ftpmaster.internal/ubuntu/ natty/main libk5crypto3 amd64 1.8.3+dfsg-5ubuntu2 [84.8 kB] Get:89 http://ftpmaster.internal/ubuntu/ natty/main libgssapi-krb5-2 amd64 1.8.3+dfsg-5ubuntu2 [109 kB] Get:90 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-3 amd64 1.8.3+dfsg-5ubuntu2 [348 kB] Get:91 http://ftpmaster.internal/ubuntu/ natty/main libkrb5support0 amd64 1.8.3+dfsg-5ubuntu2 [24.5 kB] Get:92 http://ftpmaster.internal/ubuntu/ natty/main apt amd64 0.8.13.2ubuntu2 [2114 kB] Get:93 http://ftpmaster.internal/ubuntu/ natty/main libpam-runtime all 1.1.2-2ubuntu7 [42.7 kB] Get:94 http://ftpmaster.internal/ubuntu/ natty/main libssl0.9.8 amd64 0.9.8o-5ubuntu1 [835 kB] Get:95 http://ftpmaster.internal/ubuntu/ natty/main python2.7-minimal amd64 2.7.1-5ubuntu2 [1621 kB] Get:96 http://ftpmaster.internal/ubuntu/ natty/main readline-common all 6.2-0ubuntu1 [49.8 kB] Get:97 http://ftpmaster.internal/ubuntu/ natty/main libreadline6 amd64 6.2-0ubuntu1 [140 kB] Get:98 http://ftpmaster.internal/ubuntu/ natty/main gpgv amd64 1.4.11-3ubuntu1 [186 kB] Get:99 http://ftpmaster.internal/ubuntu/ natty/main gnupg amd64 1.4.11-3ubuntu1 [811 kB] Get:100 http://ftpmaster.internal/ubuntu/ natty/main netbase all 4.45ubuntu1 [14.8 kB] Get:101 http://ftpmaster.internal/ubuntu/ natty/main locales all 2.13+git20100825-4 [3496 kB] Get:102 http://ftpmaster.internal/ubuntu/ natty/main apt-transport-https amd64 0.8.13.2ubuntu2 [19.2 kB] Get:103 http://ftpmaster.internal/ubuntu/ natty/main libldap-2.4-2 amd64 2.4.23-6ubuntu6 [178 kB] Get:104 http://ftpmaster.internal/ubuntu/ natty/main openssl amd64 0.9.8o-5ubuntu1 [406 kB] Get:105 http://ftpmaster.internal/ubuntu/ natty/main cpp amd64 4:4.5.2-1ubuntu3 [28.0 kB] Get:106 http://ftpmaster.internal/ubuntu/ natty/main dpkg-dev all 1.16.0~ubuntu6 [476 kB] Get:107 http://ftpmaster.internal/ubuntu/ natty/main libdpkg-perl all 1.16.0~ubuntu6 [183 kB] Get:108 http://ftpmaster.internal/ubuntu/ natty/main make amd64 3.81-8ubuntu1 [119 kB] Get:109 http://ftpmaster.internal/ubuntu/ natty/main gcc amd64 4:4.5.2-1ubuntu3 [5062 B] Get:110 http://ftpmaster.internal/ubuntu/ natty/main g++ amd64 4:4.5.2-1ubuntu3 [1444 B] Get:111 http://ftpmaster.internal/ubuntu/ natty/main pkg-create-dbgsym all 0.48 [8096 B] Get:112 http://ftpmaster.internal/ubuntu/ natty/main pkgbinarymangler all 95 [23.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.6 MB in 1s (35.5 MB/s) (Reading database ... 13640 files and directories currently installed.) Preparing to replace libnih-dbus1 1.0.3-1 (using .../libnih-dbus1_1.0.3-1ubuntu1_amd64.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libnih1 1.0.3-1 (using .../libnih1_1.0.3-1ubuntu1_amd64.deb) ... Unpacking replacement libnih1 ... Preparing to replace libc6-dev 2.12.1-0ubuntu14 (using .../libc6-dev_2.13-0ubuntu13_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.12.1-0ubuntu14 (using .../libc-dev-bin_2.13-0ubuntu13_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc-bin 2.12.1-0ubuntu14 (using .../libc-bin_2.13-0ubuntu13_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-0ubuntu13) ... (Reading database ... 13663 files and directories currently installed.) Preparing to replace libc6 2.12.1-0ubuntu14 (using .../libc6_2.13-0ubuntu13_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.13-0ubuntu13) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Selecting previously deselected package multiarch-support. (Reading database ... 13664 files and directories currently installed.) Unpacking multiarch-support (from .../multiarch-support_2.13-0ubuntu13_amd64.deb) ... Setting up multiarch-support (2.13-0ubuntu13) ... (Reading database ... 13667 files and directories currently installed.) Preparing to replace libdbus-1-3 1.4.1-0ubuntu2 (using .../libdbus-1-3_1.4.6-1ubuntu6_amd64.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace linux-libc-dev 2.6.38-1.28 (using .../linux-libc-dev_2.6.38-8.42_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.5.2-2ubuntu1 (using .../libgomp1_4.5.2-8ubuntu3_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.5-base 4.5.2-2ubuntu1 (using .../gcc-4.5-base_4.5.2-8ubuntu3_amd64.deb) ... Unpacking replacement gcc-4.5-base ... Setting up gcc-4.5-base (4.5.2-8ubuntu3) ... (Reading database ... 13676 files and directories currently installed.) Preparing to replace libgcc1 1:4.5.2-2ubuntu1 (using .../libgcc1_1%3a4.5.2-8ubuntu3_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.5.2-8ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13676 files and directories currently installed.) Preparing to replace cpp-4.5 4.5.2-2ubuntu1 (using .../cpp-4.5_4.5.2-8ubuntu3_amd64.deb) ... Unpacking replacement cpp-4.5 ... Preparing to replace libstdc++6-4.5-dev 4.5.2-2ubuntu1 (using .../libstdc++6-4.5-dev_4.5.2-8ubuntu3_amd64.deb) ... Unpacking replacement libstdc++6-4.5-dev ... Preparing to replace g++-4.5 4.5.2-2ubuntu1 (using .../g++-4.5_4.5.2-8ubuntu3_amd64.deb) ... 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Setting up debconf (1.5.36ubuntu4) ... (Reading database ... 13673 files and directories currently installed.) Preparing to replace tzdata 2011a-1 (using .../tzdata_2011e-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2011e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Apr 14 15:20:06 UTC 2011. Universal Time is now: Thu Apr 14 15:20:06 UTC 2011. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13682 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-4ubuntu2 (using .../libpam0g_1.1.2-2ubuntu7_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.2-2ubuntu7) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13682 files and directories currently installed.) 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Unpacking replacement dpkg ... Setting up dpkg (1.16.0~ubuntu6) ... (Reading database ... 13686 files and directories currently installed.) Preparing to replace e2fslibs 1.41.14-1ubuntu1 (using .../e2fslibs_1.41.14-1ubuntu3_amd64.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.14-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13686 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.14-1ubuntu1 (using .../e2fsprogs_1.41.14-1ubuntu3_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.14-1ubuntu3) ... (Reading database ... 13686 files and directories currently installed.) Preparing to replace findutils 4.4.2-1ubuntu2 (using .../findutils_4.4.2-1ubuntu3_amd64.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-1ubuntu3) ... (Reading database ... 13686 files and directories currently installed.) 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Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.5-6ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13684 files and directories currently installed.) Preparing to replace libdb4.8 4.8.30-3 (using .../libdb4.8_4.8.30-5ubuntu2_amd64.deb) ... Unpacking replacement libdb4.8 ... Setting up libdb4.8 (4.8.30-5ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13684 files and directories currently installed.) Preparing to replace libgdbm3 1.8.3-9 (using .../libgdbm3_1.8.3-9ubuntu1_amd64.deb) ... Unpacking replacement libgdbm3 ... Preparing to replace perl 5.10.1-17ubuntu1 (using .../perl_5.10.1-17ubuntu4_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.1-17ubuntu1 (using .../perl-base_5.10.1-17ubuntu4_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.1-17ubuntu4) ... 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Installing new version of config file /etc/cron.daily/apt ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13712 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.1-4ubuntu2 (using .../libpam-runtime_1.1.2-2ubuntu7_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.2-2ubuntu7) ... (Reading database ... 13712 files and directories currently installed.) Preparing to replace libssl0.9.8 0.9.8o-4ubuntu1 (using .../libssl0.9.8_0.9.8o-5ubuntu1_amd64.deb) ... Unpacking replacement libssl0.9.8 ... Setting up libssl0.9.8 (0.9.8o-5ubuntu1) ... 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Preparing to replace libdpkg-perl 1.15.8.7ubuntu2 (using .../libdpkg-perl_1.16.0~ubuntu6_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace make 3.81-8 (using .../make_3.81-8ubuntu1_amd64.deb) ... Unpacking replacement make ... Preparing to replace gcc 4:4.5.1-1ubuntu3 (using .../gcc_4%3a4.5.2-1ubuntu3_amd64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.5.1-1ubuntu3 (using .../g++_4%3a4.5.2-1ubuntu3_amd64.deb) ... Unpacking replacement g++ ... Preparing to replace pkg-create-dbgsym 0.46 (using .../pkg-create-dbgsym_0.48_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 91 (using .../pkgbinarymangler_95_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libnih1 (1.0.3-1ubuntu1) ... Setting up libdbus-1-3 (1.4.6-1ubuntu6) ... Setting up libnih-dbus1 (1.0.3-1ubuntu1) ... Setting up libc-dev-bin (2.13-0ubuntu13) ... Setting up linux-libc-dev (2.6.38-8.42) ... Setting up libc6-dev (2.13-0ubuntu13) ... Setting up libgomp1 (4.5.2-8ubuntu3) ... Setting up libgmp3c2 (2:4.3.2+dfsg-1ubuntu3) ... Setting up libgmpxx4ldbl (2:4.3.2+dfsg-1ubuntu3) ... Setting up libmpfr4 (3.0.0-7) ... Setting up libmpc2 (0.9-1) ... Setting up cpp-4.5 (4.5.2-8ubuntu3) ... Setting up binutils (2.21.0.20110327-2ubuntu2) ... Setting up gcc-4.5 (4.5.2-8ubuntu3) ... Setting up libgdbm3 (1.8.3-9ubuntu1) ... Setting up bzip2 (1.0.5-6ubuntu1) ... Setting up sysvinit-utils (2.87dsf-4ubuntu23) ... Setting up sysv-rc (2.87dsf-4ubuntu23) ... Setting up libudev0 (167-0ubuntu3) ... Setting up libpcre3 (8.12-3ubuntu2) ... Setting up libglib2.0-0 (2.28.5-0ubuntu1) ... Setting up libusb-0.1-4 (2:0.1.12-17) ... Setting up initramfs-tools-bin (0.98.8ubuntu3) ... Setting up libklibc (1.5.20-1ubuntu5) ... Setting up klibc-utils (1.5.20-1ubuntu5) ... Setting up busybox-initramfs (1:1.17.1-10ubuntu1) ... Setting up cpio (2.11-7ubuntu1) ... Setting up adduser (3.112+nmu1ubuntu5) ... Setting up libdrm2 (2.4.23-1ubuntu6) ... Setting up libdrm-intel1 (2.4.23-1ubuntu6) ... Setting up libdrm-nouveau1a (2.4.23-1ubuntu6) ... Setting up libdrm-radeon1 (2.4.23-1ubuntu6) ... Setting up libpng12-0 (1.2.44-1ubuntu3) ... Setting up libplymouth2 (0.8.2-2ubuntu21) ... Setting up libgpg-error0 (1.10-0.2ubuntu1) ... Setting up libgcrypt11 (1.4.6-4ubuntu2) ... Setting up libtasn1-3 (2.7-1ubuntu1) ... Setting up libgnutls26 (2.8.6-1ubuntu2) ... Setting up libkeyutils1 (1.4-4ubuntu2) ... Setting up libkrb5support0 (1.8.3+dfsg-5ubuntu2) ... Setting up libk5crypto3 (1.8.3+dfsg-5ubuntu2) ... Setting up libkrb5-3 (1.8.3+dfsg-5ubuntu2) ... Setting up libgssapi-krb5-2 (1.8.3+dfsg-5ubuntu2) ... Setting up readline-common (6.2-0ubuntu1) ... Setting up libreadline6 (6.2-0ubuntu1) ... Setting up gpgv (1.4.11-3ubuntu1) ... Setting up gnupg (1.4.11-3ubuntu1) ... Setting up locales (2.13+git20100825-4) ... Setting up apt-transport-https (0.8.13.2ubuntu2) ... Setting up libldap-2.4-2 (2.4.23-6ubuntu6) ... Setting up openssl (0.9.8o-5ubuntu1) ... Setting up cpp (4:4.5.2-1ubuntu3) ... Setting up make (3.81-8ubuntu1) ... Setting up gcc (4:4.5.2-1ubuntu3) ... Setting up pkg-create-dbgsym (0.48) ... Setting up pkgbinarymangler (95) ... Setting up libstdc++6-4.5-dev (4.5.2-8ubuntu3) ... Setting up perl-modules (5.10.1-17ubuntu4) ... Setting up mountall (2.25) ... Installing new version of config file /etc/init/mounted-tmp.conf ... Setting up upstart (0.9.4-1ubuntu1) ... Installing new version of config file /etc/init/rc-sysinit.conf ... Installing new version of config file /etc/init/upstart-udev-bridge.conf ... Setting up initscripts (2.87dsf-4ubuntu23) ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/umountnfs.sh ... Installing new version of config file /etc/init.d/umountroot ... Setting up netbase (4.45ubuntu1) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up g++-4.5 (4.5.2-8ubuntu3) ... Setting up perl (5.10.1-17ubuntu4) ... Setting up module-init-tools (3.12-1ubuntu6) ... Installing new version of config file /etc/modprobe.d/blacklist-framebuffer.conf ... Removing obsolete conffile /etc/modprobe.d/intel-5300-iwlagn-disable11n.conf ... Setting up initramfs-tools (0.98.8ubuntu3) ... update-initramfs: deferring update (trigger activated) Setting up procps (1:3.2.8-10ubuntu3) ... Setting up udev (167-0ubuntu3) ... Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up plymouth (0.8.2-2ubuntu21) ... Installing new version of config file /etc/init/plymouth-splash.conf ... update-initramfs: deferring update (trigger activated) Setting up libdpkg-perl (1.16.0~ubuntu6) ... Setting up dpkg-dev (1.16.0~ubuntu6) ... Setting up g++ (4:4.5.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055', 'amd64', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc'] Initiating build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055 with 2 processor cores. Automatic build of coot_0.7pre1+svn3470-0ubuntu1~natty1 on rhenium by sbuild/amd64 1.170.5 Build started at 20110414-1520 ****************************************************************************** coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), autotools-dev, automake, libtool, quilt, libmmdb-dev (>= 1.23), libclipper-dev, libgpp4-dev, libssm-dev (>= 1.1), libgsl0-dev, libglib2.0-dev, libgtk2.0-dev, libgtkglext1-dev, freeglut3-dev, libgnomecanvas2-dev, libgoocanvas-dev, python-dev, python-gtk2-dev, swig (>= 1.3.36), texinfo, imagemagick, ghostscript, sharutils Checking for already installed source dependencies... debhelper: missing autotools-dev: missing automake: missing libtool: missing quilt: missing libmmdb-dev: missing libclipper-dev: missing libgpp4-dev: missing libssm-dev: missing libgsl0-dev: missing libglib2.0-dev: missing libgtk2.0-dev: missing libgtkglext1-dev: missing freeglut3-dev: missing libgnomecanvas2-dev: missing libgoocanvas-dev: missing python-dev: missing python-gtk2-dev: missing swig: missing texinfo: missing imagemagick: missing ghostscript: missing sharutils: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev automake libtool quilt libmmdb-dev libclipper-dev libgpp4-dev libssm-dev libgsl0-dev libglib2.0-dev libgtk2.0-dev libgtkglext1-dev freeglut3-dev libgnomecanvas2-dev libgoocanvas-dev python-dev python-gtk2-dev swig texinfo imagemagick ghostscript sharutils Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf bsdmainutils diffstat fftw-dev fftw2 file fontconfig fontconfig-config freeglut3 gettext gettext-base gir1.2-glib-2.0 groff-base gs-cjk-resource gsfonts html2text intltool-debian libart-2.0-2 libart-2.0-dev libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libclipper2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdrm-dev libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgail-common libgail-dev libgail18 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-dev libgfortran3 libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-glx libglade2-0 libglib2.0-bin libglib2.0-data libglu1-mesa libglu1-mesa-dev libgnomecanvas2-0 libgnomecanvas2-common libgoocanvas-common libgoocanvas3 libgpp4-0 libgs9 libgs9-common libgsl0ldbl libgtk2.0-0 libgtk2.0-common libgtkglext1 libice-dev libice6 libijs-0.35 libjasper1 libjbig2dec0 libjpeg62 libkms1 liblcms1 liblqr-1-0 libltdl7 libmagic1 libmagickcore3 libmagickwand3 libmmdb0 libmpich1.0gf libpango1.0-0 libpango1.0-dev libpaper1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpython2.7 libsm-dev libsm6 libsqlite3-0 libssl-dev libssm0 libthai-data libthai0 libtiff4 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-cairo python-gobject python-gobject-dev python-gtk2 python-support python2.7 python2.7-dev sfftw-dev sfftw2 shared-mime-info ttf-dejavu-core ucf x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make mpich-bin defoma gettext-doc ghostscript-x ghostscript-cups hpijs groff ttf-sazanami-mincho ttf-sazanami-gothic ttf-arphic-ukai ttf-arphic-uming ttf-unfonts-core imagemagick-doc autotrace cups-bsd lpr lprng enscript ffmpeg gimp gnuplot grads hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils texlive-base-bin transfig xdg-utils ufraw-batch libcairo2-doc libclipper-doc cups-common libgail-doc libglib2.0-doc python-subunit libgnomecanvas2-doc libgpp4-doc gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html librsvg2-common gvfs libgtk2.0-doc libjasper-runtime liblcms-utils ttf-japanese-gothic ttf-japanese-mincho ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libpango1.0-doc libtool-doc automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl python-doc python-tk python-profiler python-gobject-dbg python-gtk2-doc python-numpy python2.7-doc python2.7-profiler procmail graphviz bsd-mailx mailx swig-examples swig-doc texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree Recommended packages: curl wget lynx-cur cmap-adobe-japan1 cmap-adobe-cns1 cmap-adobe-gb1 cmap-adobe-korea1 cmap-adobe-japan2 libmagickcore3-extra netpbm libgl1-mesa-dri hicolor-icon-theme libgtk2.0-bin x-ttcidfont-conf libpaper-utils libltdl-dev xml-core libmail-sendmail-perl python-gobject-cairo docbook-xsl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper diffstat fftw-dev fftw2 file fontconfig fontconfig-config freeglut3 freeglut3-dev gettext gettext-base ghostscript gir1.2-glib-2.0 groff-base gs-cjk-resource gsfonts html2text imagemagick intltool-debian libart-2.0-2 libart-2.0-dev libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libclipper-dev libclipper2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdrm-dev libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgail-common libgail-dev libgail18 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-dev libgfortran3 libgirepository-1.0-1 libgl1-mesa-dev libgl1-mesa-glx libglade2-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglu1-mesa libglu1-mesa-dev libgnomecanvas2-0 libgnomecanvas2-common libgnomecanvas2-dev libgoocanvas-common libgoocanvas-dev libgoocanvas3 libgpp4-0 libgpp4-dev libgs9 libgs9-common libgsl0-dev libgsl0ldbl libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libice-dev libice6 libijs-0.35 libjasper1 libjbig2dec0 libjpeg62 libkms1 liblcms1 liblqr-1-0 libltdl7 libmagic1 libmagickcore3 libmagickwand3 libmmdb-dev libmmdb0 libmpich1.0gf libpango1.0-0 libpango1.0-dev libpaper1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpython2.7 libsm-dev libsm6 libsqlite3-0 libssl-dev libssm-dev libssm0 libthai-data libthai0 libtiff4 libtool libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-cairo python-dev python-gobject python-gobject-dev python-gtk2 python-gtk2-dev python-support python2.7 python2.7-dev quilt sfftw-dev sfftw2 shared-mime-info sharutils swig texinfo ttf-dejavu-core ucf x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded. Need to get 81.6 MB of archives. After this operation, 275 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libsqlite3-0 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-shm0 libxext6 libxrender1 libatk1.0-data libatk1.0-0 libavahi-common-data libavahi-common3 libavahi-client3 libgfortran3 x11-common libice6 x11proto-core-dev libice-dev libkms1 libpixman-1-0 libcairo2 libdatrie1 libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libsm6 libjpeg62 libtiff4 libxcomposite1 libxfixes3 libxcursor1 libxdamage1 libxi6 libxinerama1 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev libxmu-headers libxrandr2 libxt6 libxxf86vm1 libmagic1 file libpopt0 mime-support python2.7 python bsdmainutils gettext-base libffi5 libgirepository-1.0-1 gir1.2-glib-2.0 groff-base libpipeline1 libpython2.7 libxml2 man-db python-support python-cairo python-gobject m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper diffstat libmpich1.0gf fftw2 fftw-dev libgl1-mesa-glx freeglut3 libdrm-dev mesa-common-dev x11proto-xext-dev libxext-dev libgl1-mesa-dev libglu1-mesa libglu1-mesa-dev libsm-dev libxt-dev freeglut3-dev libcups2 libcupsimage2 libijs-0.35 libjasper1 libjbig2dec0 liblcms1 libpaper1 libgs9-common gs-cjk-resource libgs9 gsfonts ghostscript liblqr-1-0 libltdl7 libmagickcore3 libmagickwand3 imagemagick libart-2.0-2 pkg-config libart-2.0-dev libglib2.0-data libglib2.0-bin zlib1g-dev libglib2.0-dev libatk1.0-dev libcairo-gobject2 libcairo-script-interpreter2 libexpat1-dev libfreetype6-dev libfontconfig1-dev x11proto-render-dev libxrender-dev libpng12-dev libpixman-1-dev libxcb-render0-dev libxcb-shm0-dev libcairo2-dev libgpp4-0 libmmdb0 sfftw2 libclipper2 libmmdb-dev libgpp4-dev sfftw-dev libclipper-dev libgdk-pixbuf2.0-0 libgtk2.0-common shared-mime-info libgtk2.0-0 libgail18 libgail-common libgdk-pixbuf2.0-dev libxft-dev libpango1.0-dev x11proto-xinerama-dev libxinerama-dev xorg-sgml-doctools libxi-dev x11proto-randr-dev libxrandr-dev x11proto-fixes-dev libxfixes-dev libxcursor-dev x11proto-composite-dev libxcomposite-dev x11proto-damage-dev libxdamage-dev libxml2-utils libgtk2.0-dev libgail-dev libglade2-0 libgnomecanvas2-common libgnomecanvas2-0 libgnomecanvas2-dev libgoocanvas-common libgoocanvas3 libgoocanvas-dev libgsl0ldbl libgsl0-dev libxmu6 libgtkglext1 libxmu-dev libgtkglext1-dev libssl-dev libssm0 libssm-dev libtool python2.7-dev python-dev libffi-dev python-gobject-dev python-gtk2 python-gtk2-dev quilt sharutils swig texinfo Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 amd64 2.0.1-7ubuntu3 [133 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main libsqlite3-0 amd64 3.7.4-2ubuntu5 [328 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6 amd64 2.4.4-1ubuntu2 [336 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main ucf all 3.0025+nmu1ubuntu1 [54.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main ttf-dejavu-core all 2.31-1 [1450 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main fontconfig-config all 2.8.0-2.1ubuntu3 [44.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1 amd64 2.8.0-2.1ubuntu3 [126 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libxau6 amd64 1:1.0.6-1ubuntu1 [8408 B] Get:9 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp6 amd64 1:1.1.0-1ubuntu1 [12.8 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main libxcb1 amd64 1.7-2ubuntu2 [40.9 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main libx11-data all 2:1.4.2-1ubuntu3 [169 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main libx11-6 amd64 2:1.4.2-1ubuntu3 [769 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libxcb-render0 amd64 1.7-2ubuntu2 [13.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main libxcb-shm0 amd64 1.7-2ubuntu2 [6764 B] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libxext6 amd64 2:1.2.0-2ubuntu1 [33.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main libxrender1 amd64 1:0.9.6-1ubuntu1 [20.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-data all 2.0.0-0ubuntu1 [11.7 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-0 amd64 2.0.0-0ubuntu1 [58.2 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common-data amd64 0.6.30-0ubuntu2 [22.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main libavahi-common3 amd64 0.6.30-0ubuntu2 [39.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main libavahi-client3 amd64 0.6.30-0ubuntu2 [44.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main libgfortran3 amd64 4.5.2-8ubuntu3 [287 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main x11-common all 1:7.6+4ubuntu3 [69.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main libice6 amd64 2:1.0.7-1ubuntu1 [46.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main x11proto-core-dev all 7.0.20-1 [294 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main libice-dev amd64 2:1.0.7-1ubuntu1 [135 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main libkms1 amd64 2.4.23-1ubuntu6 [9468 B] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libpixman-1-0 amd64 0.20.2-0ubuntu1 [187 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libcairo2 amd64 1.10.2-2ubuntu2 [474 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main libdatrie1 amd64 0.2.4-1 [27.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main libthai-data all 0.1.14-2ubuntu1 [175 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main libthai0 amd64 0.1.14-2ubuntu1 [18.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main libxft2 amd64 2.2.0-2ubuntu2 [42.9 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main fontconfig amd64 2.8.0-2.1ubuntu3 [158 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-0 amd64 1.28.4-0ubuntu1 [365 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main libsm6 amd64 2:1.2.0-1ubuntu1 [18.4 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main libjpeg62 amd64 6b1-1ubuntu1 [88.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main libtiff4 amd64 3.9.4-5ubuntu5 [144 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main libxcomposite1 amd64 1:0.4.3-1ubuntu1 [7808 B] Get:40 http://ftpmaster.internal/ubuntu/ natty/main libxfixes3 amd64 1:4.0.5-1ubuntu1 [12.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main libxcursor1 amd64 1:1.1.11-1ubuntu1 [22.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main libxdamage1 amd64 1:1.1.3-1ubuntu1 [7632 B] Get:43 http://ftpmaster.internal/ubuntu/ natty/main libxi6 amd64 2:1.4.1-1ubuntu2 [31.8 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main libxinerama1 amd64 2:1.1.1-1ubuntu1 [8080 B] Get:45 http://ftpmaster.internal/ubuntu/ natty/main libxau-dev amd64 1:1.0.6-1ubuntu1 [12.0 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp-dev amd64 1:1.1.0-1ubuntu1 [47.5 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main x11proto-input-dev all 2.0.1-1ubuntu1 [68.5 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main x11proto-kb-dev all 1.0.5-1 [25.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main xtrans-dev all 1.2.6-1 [80.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0 amd64 0.3-2 [3202 B] Get:51 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0-dev amd64 0.3-2 [2412 B] Get:52 http://ftpmaster.internal/ubuntu/ natty/main libxcb1-dev amd64 1.7-2ubuntu2 [79.7 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main libx11-dev amd64 2:1.4.2-1ubuntu3 [3165 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main libxmu-headers all 2:1.1.0-1 [56.3 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libxrandr2 amd64 2:1.3.1-1ubuntu1 [18.4 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main libxt6 amd64 1:1.0.9-1ubuntu1 [183 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main libxxf86vm1 amd64 1:1.1.1-1ubuntu1 [11.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 amd64 5.04-5ubuntu2 [205 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main file amd64 5.04-5ubuntu2 [22.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main libpopt0 amd64 1.16-1 [35.1 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main python2.7 amd64 2.7.1-5ubuntu2 [2585 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main python all 2.7.1-0ubuntu5 [163 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils amd64 8.2.2 [199 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main gettext-base amd64 0.18.1.1-3ubuntu1 [80.6 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main libffi5 amd64 3.0.9-3ubuntu1 [19.3 kB] Get:67 http://ftpmaster.internal/ubuntu/ natty/main libgirepository-1.0-1 amd64 0.10.7-0ubuntu1 [98.9 kB] Get:68 http://ftpmaster.internal/ubuntu/ natty/main gir1.2-glib-2.0 amd64 0.10.7-0ubuntu1 [138 kB] Get:69 http://ftpmaster.internal/ubuntu/ natty/main groff-base amd64 1.21-5 [1052 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main libpipeline1 amd64 1.2.0-1 [26.1 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main libpython2.7 amd64 2.7.1-5ubuntu2 [1196 kB] Get:72 http://ftpmaster.internal/ubuntu/ natty/main libxml2 amd64 2.7.8.dfsg-2 [664 kB] Get:73 http://ftpmaster.internal/ubuntu/ natty/main man-db amd64 2.5.9-4 [741 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main python-support all 1.0.10ubuntu3 [25.9 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main python-cairo amd64 1.8.8-1ubuntu1 [79.3 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main python-gobject amd64 2.28.3-1 [547 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/main m4 amd64 1.4.14-3 [290 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main autoconf all 2.67-2ubuntu1 [569 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main autotools-dev all 20100122.1 [70.7 kB] Get:80 http://ftpmaster.internal/ubuntu/ natty/main automake all 1:1.11.1-1ubuntu1 [544 kB] Get:81 http://ftpmaster.internal/ubuntu/ natty/main html2text amd64 1.3.2a-15 [104 kB] Get:82 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 amd64 0.6.2-1 [101 kB] Get:83 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 amd64 0.9.3-3 [425 kB] Get:84 http://ftpmaster.internal/ubuntu/ natty/main gettext amd64 0.18.1.1-3ubuntu1 [1329 kB] Get:85 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:86 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16+nmu1 [212 kB] Get:87 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.1.2ubuntu4 [482 kB] Get:88 http://ftpmaster.internal/ubuntu/ natty/main diffstat amd64 1.54-1 [22.7 kB] Get:89 http://ftpmaster.internal/ubuntu/ natty/universe libmpich1.0gf amd64 1.2.7-9.1ubuntu1 [746 kB] Get:90 http://ftpmaster.internal/ubuntu/ natty/universe fftw2 amd64 2.1.3-22 [273 kB] Get:91 http://ftpmaster.internal/ubuntu/ natty/universe fftw-dev amd64 2.1.3-22 [322 kB] Get:92 http://ftpmaster.internal/ubuntu/ natty/main libgl1-mesa-glx amd64 7.10.2-0ubuntu1 [115 kB] Get:93 http://ftpmaster.internal/ubuntu/ natty/main freeglut3 amd64 2.6.0-1ubuntu2 [91.5 kB] Get:94 http://ftpmaster.internal/ubuntu/ natty/main libdrm-dev amd64 2.4.23-1ubuntu6 [128 kB] Get:95 http://ftpmaster.internal/ubuntu/ natty/main mesa-common-dev amd64 7.10.2-0ubuntu1 [224 kB] Get:96 http://ftpmaster.internal/ubuntu/ natty/main x11proto-xext-dev all 7.1.99.0~git20110111.9df8b776-0ubuntu2 [254 kB] Get:97 http://ftpmaster.internal/ubuntu/ natty/main libxext-dev amd64 2:1.2.0-2ubuntu1 [139 kB] Get:98 http://ftpmaster.internal/ubuntu/ natty/main libgl1-mesa-dev amd64 7.10.2-0ubuntu1 [7596 B] Get:99 http://ftpmaster.internal/ubuntu/ natty/main libglu1-mesa amd64 7.10.2-0ubuntu1 [165 kB] Get:100 http://ftpmaster.internal/ubuntu/ natty/main libglu1-mesa-dev amd64 7.10.2-0ubuntu1 [201 kB] Get:101 http://ftpmaster.internal/ubuntu/ natty/main libsm-dev amd64 2:1.2.0-1ubuntu1 [89.8 kB] Get:102 http://ftpmaster.internal/ubuntu/ natty/main libxt-dev amd64 1:1.0.9-1ubuntu1 [494 kB] Get:103 http://ftpmaster.internal/ubuntu/ natty/main freeglut3-dev amd64 2.6.0-1ubuntu2 [164 kB] Get:104 http://ftpmaster.internal/ubuntu/ natty/main libcups2 amd64 1.4.6-4 [167 kB] Get:105 http://ftpmaster.internal/ubuntu/ natty/main libcupsimage2 amd64 1.4.6-4 [58.0 kB] Get:106 http://ftpmaster.internal/ubuntu/ natty/main libijs-0.35 amd64 0.35-7ubuntu1 [16.0 kB] Get:107 http://ftpmaster.internal/ubuntu/ natty/main libjasper1 amd64 1.900.1-7ubuntu2 [154 kB] Get:108 http://ftpmaster.internal/ubuntu/ natty/main libjbig2dec0 amd64 0.11-1ubuntu1 [41.2 kB] Get:109 http://ftpmaster.internal/ubuntu/ natty/main liblcms1 amd64 1.18.dfsg-1.2ubuntu1 [105 kB] Get:110 http://ftpmaster.internal/ubuntu/ natty/main libpaper1 amd64 1.1.24 [21.5 kB] Get:111 http://ftpmaster.internal/ubuntu/ natty/main libgs9-common all 9.01~dfsg-1ubuntu5 [4393 kB] Get:112 http://ftpmaster.internal/ubuntu/ natty/main gs-cjk-resource all 1.20100103-2 [1478 kB] Get:113 http://ftpmaster.internal/ubuntu/ natty/main libgs9 amd64 9.01~dfsg-1ubuntu5 [2289 kB] Get:114 http://ftpmaster.internal/ubuntu/ natty/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:115 http://ftpmaster.internal/ubuntu/ natty/main ghostscript amd64 9.01~dfsg-1ubuntu5 [45.0 kB] Get:116 http://ftpmaster.internal/ubuntu/ natty/main liblqr-1-0 amd64 0.4.1-1ubuntu2 [39.7 kB] Get:117 http://ftpmaster.internal/ubuntu/ natty/main libltdl7 amd64 2.2.6b-2ubuntu3 [36.4 kB] Get:118 http://ftpmaster.internal/ubuntu/ natty/main libmagickcore3 amd64 7:6.6.2.6-1ubuntu4 [1752 kB] Get:119 http://ftpmaster.internal/ubuntu/ natty/main libmagickwand3 amd64 7:6.6.2.6-1ubuntu4 [364 kB] Get:120 http://ftpmaster.internal/ubuntu/ natty/main imagemagick amd64 7:6.6.2.6-1ubuntu4 [51.0 kB] Get:121 http://ftpmaster.internal/ubuntu/ natty/main libart-2.0-2 amd64 2.3.21-1 [58.1 kB] Get:122 http://ftpmaster.internal/ubuntu/ natty/main pkg-config amd64 0.25-1.1ubuntu1 [41.8 kB] Get:123 http://ftpmaster.internal/ubuntu/ natty/main libart-2.0-dev amd64 2.3.21-1 [75.8 kB] Get:124 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-data all 2.28.5-0ubuntu1 [69.6 kB] Get:125 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-bin amd64 2.28.5-0ubuntu1 [29.2 kB] Get:126 http://ftpmaster.internal/ubuntu/ natty/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu3 [167 kB] Get:127 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-dev amd64 2.28.5-0ubuntu1 [1653 kB] Get:128 http://ftpmaster.internal/ubuntu/ natty/main libatk1.0-dev amd64 2.0.0-0ubuntu1 [125 kB] Get:129 http://ftpmaster.internal/ubuntu/ natty/main libcairo-gobject2 amd64 1.10.2-2ubuntu2 [113 kB] Get:130 http://ftpmaster.internal/ubuntu/ natty/main libcairo-script-interpreter2 amd64 1.10.2-2ubuntu2 [155 kB] Get:131 http://ftpmaster.internal/ubuntu/ natty/main libexpat1-dev amd64 2.0.1-7ubuntu3 [217 kB] Get:132 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6-dev amd64 2.4.4-1ubuntu2 [770 kB] Get:133 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1-dev amd64 2.8.0-2.1ubuntu3 [659 kB] Get:134 http://ftpmaster.internal/ubuntu/ natty/main x11proto-render-dev all 2:0.11.1-1 [18.5 kB] Get:135 http://ftpmaster.internal/ubuntu/ natty/main libxrender-dev amd64 1:0.9.6-1ubuntu1 [29.9 kB] Get:136 http://ftpmaster.internal/ubuntu/ natty/main libpng12-dev amd64 1.2.44-1ubuntu3 [220 kB] Get:137 http://ftpmaster.internal/ubuntu/ natty/main libpixman-1-dev amd64 0.20.2-0ubuntu1 [216 kB] Get:138 http://ftpmaster.internal/ubuntu/ natty/main libxcb-render0-dev amd64 1.7-2ubuntu2 [20.8 kB] Get:139 http://ftpmaster.internal/ubuntu/ natty/main libxcb-shm0-dev amd64 1.7-2ubuntu2 [8264 B] Get:140 http://ftpmaster.internal/ubuntu/ natty/main libcairo2-dev amd64 1.10.2-2ubuntu2 [8904 kB] Get:141 http://ftpmaster.internal/ubuntu/ natty/universe libgpp4-0 amd64 1.3.1-0ubuntu1 [127 kB] Get:142 http://ftpmaster.internal/ubuntu/ natty/universe libmmdb0 amd64 1.23.2.1-0ubuntu1 [419 kB] Get:143 http://ftpmaster.internal/ubuntu/ natty/universe sfftw2 amd64 2.1.3-22 [267 kB] Get:144 http://ftpmaster.internal/ubuntu/ natty/universe libclipper2 amd64 2.1+20100511-0ubuntu1 [866 kB] Get:145 http://ftpmaster.internal/ubuntu/ natty/universe libmmdb-dev amd64 1.23.2.1-0ubuntu1 [602 kB] Get:146 http://ftpmaster.internal/ubuntu/ natty/universe libgpp4-dev amd64 1.3.1-0ubuntu1 [172 kB] Get:147 http://ftpmaster.internal/ubuntu/ natty/universe sfftw-dev amd64 2.1.3-22 [316 kB] Get:148 http://ftpmaster.internal/ubuntu/ natty/universe libclipper-dev amd64 2.1+20100511-0ubuntu1 [1283 kB] Get:149 http://ftpmaster.internal/ubuntu/ natty/main libgdk-pixbuf2.0-0 amd64 2.23.3-0ubuntu1 [201 kB] Get:150 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-common all 2.24.4-0ubuntu1 [115 kB] Get:151 http://ftpmaster.internal/ubuntu/ natty/main shared-mime-info amd64 0.90-1ubuntu1 [436 kB] Get:152 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-0 amd64 2.24.4-0ubuntu1 [2262 kB] Get:153 http://ftpmaster.internal/ubuntu/ natty/main libgail18 amd64 2.24.4-0ubuntu1 [19.4 kB] Get:154 http://ftpmaster.internal/ubuntu/ natty/main libgail-common amd64 2.24.4-0ubuntu1 [148 kB] Get:155 http://ftpmaster.internal/ubuntu/ natty/main libgdk-pixbuf2.0-dev amd64 2.23.3-0ubuntu1 [48.2 kB] Get:156 http://ftpmaster.internal/ubuntu/ natty/main libxft-dev amd64 2.2.0-2ubuntu2 [57.1 kB] Get:157 http://ftpmaster.internal/ubuntu/ natty/main libpango1.0-dev amd64 1.28.4-0ubuntu1 [493 kB] Get:158 http://ftpmaster.internal/ubuntu/ natty/main x11proto-xinerama-dev all 1.2.1-1 [4870 B] Get:159 http://ftpmaster.internal/ubuntu/ natty/main libxinerama-dev amd64 2:1.1.1-1ubuntu1 [10.4 kB] Get:160 http://ftpmaster.internal/ubuntu/ natty/main xorg-sgml-doctools all 1:1.6-1 [5400 B] Get:161 http://ftpmaster.internal/ubuntu/ natty/main libxi-dev amd64 2:1.4.1-1ubuntu2 [219 kB] Get:162 http://ftpmaster.internal/ubuntu/ natty/main x11proto-randr-dev all 1.4.0+git20101207.0d32bb07-0ubuntu1 [32.0 kB] Get:163 http://ftpmaster.internal/ubuntu/ natty/main libxrandr-dev amd64 2:1.3.1-1ubuntu1 [26.9 kB] Get:164 http://ftpmaster.internal/ubuntu/ natty/main x11proto-fixes-dev all 1:4.1.2-1 [11.3 kB] Get:165 http://ftpmaster.internal/ubuntu/ natty/main libxfixes-dev amd64 1:4.0.5-1ubuntu1 [14.5 kB] Get:166 http://ftpmaster.internal/ubuntu/ natty/main libxcursor-dev amd64 1:1.1.11-1ubuntu1 [31.4 kB] Get:167 http://ftpmaster.internal/ubuntu/ natty/main x11proto-composite-dev all 1:0.4.2-1 [8866 B] Get:168 http://ftpmaster.internal/ubuntu/ natty/main libxcomposite-dev amd64 1:0.4.3-1ubuntu1 [11.3 kB] Get:169 http://ftpmaster.internal/ubuntu/ natty/main x11proto-damage-dev all 1:1.2.1-1 [6586 B] Get:170 http://ftpmaster.internal/ubuntu/ natty/main libxdamage-dev amd64 1:1.1.3-1ubuntu1 [7402 B] Get:171 http://ftpmaster.internal/ubuntu/ natty/main libxml2-utils amd64 2.7.8.dfsg-2 [81.3 kB] Get:172 http://ftpmaster.internal/ubuntu/ natty/main libgtk2.0-dev amd64 2.24.4-0ubuntu1 [3854 kB] Get:173 http://ftpmaster.internal/ubuntu/ natty/main libgail-dev amd64 2.24.4-0ubuntu1 [20.7 kB] Get:174 http://ftpmaster.internal/ubuntu/ natty/main libglade2-0 amd64 1:2.6.4-1build1 [54.1 kB] Get:175 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-common all 2.30.3-0ubuntu1 [8990 B] Get:176 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-0 amd64 2.30.3-0ubuntu1 [101 kB] Get:177 http://ftpmaster.internal/ubuntu/ natty/main libgnomecanvas2-dev amd64 2.30.3-0ubuntu1 [130 kB] Get:178 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas-common all 0.15-1 [29.5 kB] Get:179 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas3 amd64 0.15-1 [138 kB] Get:180 http://ftpmaster.internal/ubuntu/ natty/main libgoocanvas-dev amd64 0.15-1 [275 kB] Get:181 http://ftpmaster.internal/ubuntu/ natty/main libgsl0ldbl amd64 1.14+dfsg-1 [1010 kB] Get:182 http://ftpmaster.internal/ubuntu/ natty/main libgsl0-dev amd64 1.14+dfsg-1 [1257 kB] Get:183 http://ftpmaster.internal/ubuntu/ natty/main libxmu6 amd64 2:1.1.0-1 [52.6 kB] Get:184 http://ftpmaster.internal/ubuntu/ natty/universe libgtkglext1 amd64 1.2.0-1.1ubuntu1 [105 kB] Get:185 http://ftpmaster.internal/ubuntu/ natty/main libxmu-dev amd64 2:1.1.0-1 [62.7 kB] Get:186 http://ftpmaster.internal/ubuntu/ natty/universe libgtkglext1-dev amd64 1.2.0-1.1ubuntu1 [447 kB] Get:187 http://ftpmaster.internal/ubuntu/ natty/main libssl-dev amd64 0.9.8o-5ubuntu1 [2176 kB] Get:188 http://ftpmaster.internal/ubuntu/ natty/universe libssm0 amd64 1.1-0ubuntu1 [72.0 kB] Get:189 http://ftpmaster.internal/ubuntu/ natty/universe libssm-dev amd64 1.1-0ubuntu1 [86.9 kB] Get:190 http://ftpmaster.internal/ubuntu/ natty/main libtool amd64 2.2.6b-2ubuntu3 [264 kB] Get:191 http://ftpmaster.internal/ubuntu/ natty/main python2.7-dev amd64 2.7.1-5ubuntu2 [5204 kB] Get:192 http://ftpmaster.internal/ubuntu/ natty/main python-dev all 2.7.1-0ubuntu5 [1012 B] Get:193 http://ftpmaster.internal/ubuntu/ natty/main libffi-dev amd64 3.0.9-3ubuntu1 [89.8 kB] Get:194 http://ftpmaster.internal/ubuntu/ natty/main python-gobject-dev all 2.28.3-1 [269 kB] Get:195 http://ftpmaster.internal/ubuntu/ natty/main python-gtk2 amd64 2.22.0-0ubuntu1 [1743 kB] Get:196 http://ftpmaster.internal/ubuntu/ natty/main python-gtk2-dev all 2.22.0-0ubuntu1 [142 kB] Get:197 http://ftpmaster.internal/ubuntu/ natty/main quilt all 0.48-7 [319 kB] Get:198 http://ftpmaster.internal/ubuntu/ natty/main sharutils amd64 1:4.9-1 [112 kB] Get:199 http://ftpmaster.internal/ubuntu/ natty/main swig amd64 1.3.40-3ubuntu1 [1233 kB] Get:200 http://ftpmaster.internal/ubuntu/ natty/main texinfo amd64 4.13a.dfsg.1-6ubuntu3 [460 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 81.6 MB in 5s (14.3 MB/s) Selecting previously deselected package libexpat1. (Reading database ... 13710 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.4-2ubuntu5_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1ubuntu2_amd64.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu1ubuntu1_all.deb) ... Moving old data out of the way Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.31-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.1ubuntu3_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.1ubuntu3_amd64.deb) ... Selecting previously deselected package libxau6. 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Selecting previously deselected package python-gtk2. Unpacking python-gtk2 (from .../python-gtk2_2.22.0-0ubuntu1_amd64.deb) ... Selecting previously deselected package python-gtk2-dev. Unpacking python-gtk2-dev (from .../python-gtk2-dev_2.22.0-0ubuntu1_all.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.48-7_all.deb) ... Selecting previously deselected package sharutils. Unpacking sharutils (from .../sharutils_1%3a4.9-1_amd64.deb) ... Selecting previously deselected package swig. Unpacking swig (from .../swig_1.3.40-3ubuntu1_amd64.deb) ... Selecting previously deselected package texinfo. Unpacking texinfo (from .../texinfo_4.13a.dfsg.1-6ubuntu3_amd64.deb) ... Processing triggers for libglib2.0-0 ... No schema files found: doing nothing. Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libsqlite3-0 (3.7.4-2ubuntu5) ... Setting up libfreetype6 (2.4.4-1ubuntu2) ... Setting up ucf (3.0025+nmu1ubuntu1) ... Setting up ttf-dejavu-core (2.31-1) ... Setting up fontconfig-config (2.8.0-2.1ubuntu3) ... Setting up libfontconfig1 (2.8.0-2.1ubuntu3) ... Setting up libxau6 (1:1.0.6-1ubuntu1) ... Setting up libxdmcp6 (1:1.1.0-1ubuntu1) ... Setting up libxcb1 (1.7-2ubuntu2) ... Setting up libx11-data (2:1.4.2-1ubuntu3) ... Setting up libx11-6 (2:1.4.2-1ubuntu3) ... Setting up libxcb-render0 (1.7-2ubuntu2) ... Setting up libxcb-shm0 (1.7-2ubuntu2) ... Setting up libxext6 (2:1.2.0-2ubuntu1) ... Setting up libxrender1 (1:0.9.6-1ubuntu1) ... Setting up libatk1.0-data (2.0.0-0ubuntu1) ... Setting up libatk1.0-0 (2.0.0-0ubuntu1) ... Setting up libavahi-common-data (0.6.30-0ubuntu2) ... Setting up libavahi-common3 (0.6.30-0ubuntu2) ... Setting up libavahi-client3 (0.6.30-0ubuntu2) ... Setting up libgfortran3 (4.5.2-8ubuntu3) ... Setting up libice6 (2:1.0.7-1ubuntu1) ... Setting up x11proto-core-dev (7.0.20-1) ... Setting up libice-dev (2:1.0.7-1ubuntu1) ... Setting up libkms1 (2.4.23-1ubuntu6) ... Setting up libpixman-1-0 (0.20.2-0ubuntu1) ... Setting up libcairo2 (1.10.2-2ubuntu2) ... Setting up libdatrie1 (0.2.4-1) ... Setting up libthai-data (0.1.14-2ubuntu1) ... Setting up libthai0 (0.1.14-2ubuntu1) ... Setting up libxft2 (2.2.0-2ubuntu2) ... Setting up fontconfig (2.8.0-2.1ubuntu3) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-0 (1.28.4-0ubuntu1) ... Setting up libsm6 (2:1.2.0-1ubuntu1) ... Setting up libjpeg62 (6b1-1ubuntu1) ... Setting up libtiff4 (3.9.4-5ubuntu5) ... Setting up libxcomposite1 (1:0.4.3-1ubuntu1) ... Setting up libxfixes3 (1:4.0.5-1ubuntu1) ... Setting up libxcursor1 (1:1.1.11-1ubuntu1) ... Setting up libxdamage1 (1:1.1.3-1ubuntu1) ... Setting up libxi6 (2:1.4.1-1ubuntu2) ... Setting up libxinerama1 (2:1.1.1-1ubuntu1) ... Setting up libxau-dev (1:1.0.6-1ubuntu1) ... Setting up libxdmcp-dev (1:1.1.0-1ubuntu1) ... Setting up x11proto-input-dev (2.0.1-1ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-1) ... Setting up xtrans-dev (1.2.6-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.7-2ubuntu2) ... Setting up libx11-dev (2:1.4.2-1ubuntu3) ... Setting up libxmu-headers (2:1.1.0-1) ... Setting up libxrandr2 (2:1.3.1-1ubuntu1) ... Setting up libxt6 (1:1.0.9-1ubuntu1) ... Setting up libxxf86vm1 (1:1.1.1-1ubuntu1) ... Setting up libmagic1 (5.04-5ubuntu2) ... Setting up file (5.04-5ubuntu2) ... Setting up libpopt0 (1.16-1) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.7 (2.7.1-5ubuntu2) ... Setting up python (2.7.1-0ubuntu5) ... Setting up bsdmainutils (8.2.2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up libffi5 (3.0.9-3ubuntu1) ... Setting up libgirepository-1.0-1 (0.10.7-0ubuntu1) ... Setting up gir1.2-glib-2.0 (0.10.7-0ubuntu1) ... Setting up groff-base (1.21-5) ... Setting up libpipeline1 (1.2.0-1) ... Setting up libpython2.7 (2.7.1-5ubuntu2) ... Setting up libxml2 (2.7.8.dfsg-2) ... Setting up man-db (2.5.9-4) ... Building database of manual pages ... Setting up python-support (1.0.10ubuntu3) ... Setting up python-cairo (1.8.8-1ubuntu1) ... Setting up python-gobject (2.28.3-1) ... Setting up m4 (1.4.14-3) ... Setting up autoconf (2.67-2ubuntu1) ... Setting up autotools-dev (20100122.1) ... Setting up automake (1:1.11.1-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-3) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.1.2ubuntu4) ... Setting up diffstat (1.54-1) ... Setting up libmpich1.0gf (1.2.7-9.1ubuntu1) ... Setting up fftw2 (2.1.3-22) ... Setting up fftw-dev (2.1.3-22) ... Setting up libgl1-mesa-glx (7.10.2-0ubuntu1) ... update-alternatives: using /usr/lib/mesa/ld.so.conf to provide /etc/ld.so.conf.d/GL.conf (gl_conf) in auto mode. Setting up freeglut3 (2.6.0-1ubuntu2) ... Setting up libdrm-dev (2.4.23-1ubuntu6) ... Setting up mesa-common-dev (7.10.2-0ubuntu1) ... Setting up x11proto-xext-dev (7.1.99.0~git20110111.9df8b776-0ubuntu2) ... Setting up libxext-dev (2:1.2.0-2ubuntu1) ... Setting up libgl1-mesa-dev (7.10.2-0ubuntu1) ... Setting up libglu1-mesa (7.10.2-0ubuntu1) ... Setting up libglu1-mesa-dev (7.10.2-0ubuntu1) ... Setting up libsm-dev (2:1.2.0-1ubuntu1) ... Setting up libxt-dev (1:1.0.9-1ubuntu1) ... Setting up freeglut3-dev (2.6.0-1ubuntu2) ... Setting up libcups2 (1.4.6-4) ... Setting up libcupsimage2 (1.4.6-4) ... Setting up libijs-0.35 (0.35-7ubuntu1) ... Setting up libjasper1 (1.900.1-7ubuntu2) ... Setting up libjbig2dec0 (0.11-1ubuntu1) ... Setting up liblcms1 (1.18.dfsg-1.2ubuntu1) ... Setting up libpaper1 (1.1.24) ... Creating config file /etc/papersize with new version Setting up libgs9-common (9.01~dfsg-1ubuntu5) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... Setting up liblqr-1-0 (0.4.1-1ubuntu2) ... Setting up libltdl7 (2.2.6b-2ubuntu3) ... Setting up libmagickcore3 (7:6.6.2.6-1ubuntu4) ... Setting up libmagickwand3 (7:6.6.2.6-1ubuntu4) ... Setting up imagemagick (7:6.6.2.6-1ubuntu4) ... Setting up libart-2.0-2 (2.3.21-1) ... Setting up pkg-config (0.25-1.1ubuntu1) ... Setting up libart-2.0-dev (2.3.21-1) ... Setting up libglib2.0-data (2.28.5-0ubuntu1) ... Setting up libglib2.0-bin (2.28.5-0ubuntu1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libglib2.0-dev (2.28.5-0ubuntu1) ... Setting up libatk1.0-dev (2.0.0-0ubuntu1) ... Setting up libcairo-gobject2 (1.10.2-2ubuntu2) ... Setting up libcairo-script-interpreter2 (1.10.2-2ubuntu2) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up libfreetype6-dev (2.4.4-1ubuntu2) ... Setting up libfontconfig1-dev (2.8.0-2.1ubuntu3) ... Setting up x11proto-render-dev (2:0.11.1-1) ... Setting up libxrender-dev (1:0.9.6-1ubuntu1) ... Setting up libpng12-dev (1.2.44-1ubuntu3) ... Setting up libpixman-1-dev (0.20.2-0ubuntu1) ... Setting up libxcb-render0-dev (1.7-2ubuntu2) ... Setting up libxcb-shm0-dev (1.7-2ubuntu2) ... Setting up libcairo2-dev (1.10.2-2ubuntu2) ... Setting up libgpp4-0 (1.3.1-0ubuntu1) ... Setting up libmmdb0 (1.23.2.1-0ubuntu1) ... Setting up sfftw2 (2.1.3-22) ... Setting up libclipper2 (2.1+20100511-0ubuntu1) ... Setting up libmmdb-dev (1.23.2.1-0ubuntu1) ... Setting up libgpp4-dev (1.3.1-0ubuntu1) ... Setting up sfftw-dev (2.1.3-22) ... Setting up libclipper-dev (2.1+20100511-0ubuntu1) ... Setting up libgdk-pixbuf2.0-0 (2.23.3-0ubuntu1) ... Setting up libgtk2.0-common (2.24.4-0ubuntu1) ... Setting up shared-mime-info (0.90-1ubuntu1) ... Setting up libgtk2.0-0 (2.24.4-0ubuntu1) ... Setting up libgail18 (2.24.4-0ubuntu1) ... Setting up libgail-common (2.24.4-0ubuntu1) ... Setting up libgdk-pixbuf2.0-dev (2.23.3-0ubuntu1) ... Setting up libxft-dev (2.2.0-2ubuntu2) ... Setting up libpango1.0-dev (1.28.4-0ubuntu1) ... Setting up x11proto-xinerama-dev (1.2.1-1) ... Setting up libxinerama-dev (2:1.1.1-1ubuntu1) ... Setting up xorg-sgml-doctools (1:1.6-1) ... Setting up libxi-dev (2:1.4.1-1ubuntu2) ... Setting up x11proto-randr-dev (1.4.0+git20101207.0d32bb07-0ubuntu1) ... Setting up libxrandr-dev (2:1.3.1-1ubuntu1) ... Setting up x11proto-fixes-dev (1:4.1.2-1) ... Setting up libxfixes-dev (1:4.0.5-1ubuntu1) ... Setting up libxcursor-dev (1:1.1.11-1ubuntu1) ... Setting up x11proto-composite-dev (1:0.4.2-1) ... Setting up libxcomposite-dev (1:0.4.3-1ubuntu1) ... Setting up x11proto-damage-dev (1:1.2.1-1) ... Setting up libxdamage-dev (1:1.1.3-1ubuntu1) ... Setting up libxml2-utils (2.7.8.dfsg-2) ... Setting up libgtk2.0-dev (2.24.4-0ubuntu1) ... Setting up libgail-dev (2.24.4-0ubuntu1) ... Setting up libglade2-0 (1:2.6.4-1build1) ... Setting up libgnomecanvas2-common (2.30.3-0ubuntu1) ... Setting up libgnomecanvas2-0 (2.30.3-0ubuntu1) ... Setting up libgnomecanvas2-dev (2.30.3-0ubuntu1) ... Setting up libgoocanvas-common (0.15-1) ... Setting up libgoocanvas3 (0.15-1) ... Setting up libgoocanvas-dev (0.15-1) ... Setting up libgsl0ldbl (1.14+dfsg-1) ... Setting up libgsl0-dev (1.14+dfsg-1) ... Setting up libxmu6 (2:1.1.0-1) ... Setting up libgtkglext1 (1.2.0-1.1ubuntu1) ... Setting up libxmu-dev (2:1.1.0-1) ... Setting up libgtkglext1-dev (1.2.0-1.1ubuntu1) ... Setting up libssl-dev (0.9.8o-5ubuntu1) ... Setting up libssm0 (1.1-0ubuntu1) ... Setting up libssm-dev (1.1-0ubuntu1) ... Setting up libtool (2.2.6b-2ubuntu3) ... Setting up python2.7-dev (2.7.1-5ubuntu2) ... Setting up python-dev (2.7.1-0ubuntu5) ... Setting up libffi-dev (3.0.9-3ubuntu1) ... Setting up python-gobject-dev (2.28.3-1) ... Setting up python-gtk2 (2.22.0-0ubuntu1) ... Setting up python-gtk2-dev (2.22.0-0ubuntu1) ... Setting up quilt (0.48-7) ... Setting up sharutils (1:4.9-1) ... Setting up swig (1.3.40-3ubuntu1) ... Setting up texinfo (4.13a.dfsg.1-6ubuntu3) ... Setting up ghostscript (9.01~dfsg-1ubuntu5) ... Setting up gs-cjk-resource (1.20100103-2) ... Setting up libgs9 (9.01~dfsg-1ubuntu5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-0ubuntu13 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu6 gcc-4.5_4.5.2-8ubuntu3 g++-4.5_4.5.2-8ubuntu3 binutils_2.21.0.20110327-2ubuntu2 libstdc++6-4.5-dev_4.5.2-8ubuntu3 libstdc++6_4.5.2-8ubuntu3 ------------------------------------------------------------------------------ gpgv: Signature made Thu Apr 14 10:38:20 2011 UTC using DSA key ID 404825E7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./coot_0.7pre1+svn3470-0ubuntu1~natty1.dsc dpkg-source: info: extracting coot in coot-0.7pre1+svn3470 dpkg-source: info: unpacking coot_0.7pre1+svn3470.orig.tar.gz dpkg-source: info: applying coot_0.7pre1+svn3470-0ubuntu1~natty1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package coot dpkg-buildpackage: source version 0.7pre1+svn3470-0ubuntu1~natty1 dpkg-source --before-build coot-0.7pre1+svn3470 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp autoconf-stamp # Clean up after the build process. [ ! -f Makefile ] || /usr/bin/make distclean dh_clean rm -f debian/coot.substvars rm -f debian/coot.*.debhelper rm -f debian/coot.debhelper.log rm -rf debian/coot/ rm -f debian/coot-data.substvars rm -f debian/coot-data.*.debhelper rm -f debian/coot-data.debhelper.log rm -rf debian/coot-data/ rm -f debian/coot-docs.substvars rm -f debian/coot-docs.*.debhelper rm -f debian/coot-docs.debhelper.log rm -rf debian/coot-docs/ rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build QUILT_PATCHES=debian/patches \ quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch lbg_makefile.am.diff patching file lbg/Makefile.am Applying patch application_path.diff patching file python/coot_utils.py Applying patch command-line.diff patching file src/command-line.hh Applying patch configure-fftw-prefix.diff patching file configure.in patching file macros/clipper.m4 Applying patch coot-history.diff patching file src/globjects.cc Applying patch splash-screen.diff patching file src/gtk2-interface.c Applying patch ac_init.diff patching file configure.in Applying patch convenience-libraries.diff patching file analysis/Makefile.am patching file angles/Makefile.am patching file build/Makefile.am patching file ccp4mg-utils/Makefile.am patching file compat/Makefile.am patching file coords/Makefile.am patching file coot-surface/Makefile.am patching file coot-utils/Makefile.am patching file cootaneer/Makefile.am patching file db-main/Makefile.am patching file density-contour/Makefile.am patching file geometry/Makefile.am patching file high-res/Makefile.am patching file ideal/Makefile.am patching file lbg/Makefile.am patching file lidia-core/Makefile.am patching file ligand/Makefile.am patching file mini-mol/Makefile.am patching file skeleton/Makefile.am patching file surface/Makefile.am patching file utils/Makefile.am patching file tw/Makefile.am patching file protein_db/Makefile.am Applying patch doc_makefile.am.diff patching file doc/Makefile.am Applying patch refman.diff patching file doc/coot-reference-manual.texi Applying patch userman.diff patching file doc/coot-user-manual.texi Applying patch coot-plain-2.eps.diff patching file doc/coot-plain-2.eps Applying patch check_for_updates.diff patching file python/coot_load_modules.py patching file python/extensions.py Applying patch optparse.diff patching file src/cmdline.ggo patching file src/Makefile.am Hunk #2 succeeded at 285 (offset 1 line). Hunk #3 succeeded at 512 (offset 2 lines). patching file src/command-line.cc patching file src/cmdline.c patching file src/cmdline.h Now at patch optparse.diff touch debian/stamp-patched autoreconf --install --force libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./config.guess' libtoolize: copying file `./config.sub' libtoolize: copying file `./install-sh' libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `macros'. libtoolize: copying file `macros/libtool.m4' libtoolize: copying file `macros/ltoptions.m4' libtoolize: copying file `macros/ltsugar.m4' libtoolize: copying file `macros/ltversion.m4' libtoolize: copying file `macros/lt~obsolete.m4' doc/Makefile.am:2: installing `doc/mdate-sh' touch autoconf-stamp dh_testdir ./configure --prefix=/usr \ --with-gtk2 \ --with-mmdb-prefix=/usr \ --with-ssmlib-prefix=/usr \ --with-fftw-library-prefix=s \ --with-gpp4 \ --with-python \ --with-pygtk=/usr checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for gcc option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for CCP4... yes checking for MMDB... yes checking for SSMLib... /usr checking for Clipper... yes Not using guile checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for guile-gtk... checking libglade... no checking for Goocanvas... yes Not using database checking for curl >= 7.9.7... FAILED configure: WARNING: curl-config was not found checking build type... Linux-x86_64-ubuntu-natty-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating rama-data/Makefile config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: executing depfiles commands config.status: executing libtool commands g++ -o get-svn-revision -I./src debian/get-svn-revision.cpp dh_testdir /usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT" make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' Making all in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making all in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' Making all in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' Making all in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' Making all in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making all in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme' Making all in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python' Making all in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros' Making all in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -fPIC -DPIC -o .libs/getopt.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&1 mv -f .deps/getopt.Tpo .deps/getopt.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -fPIC -DPIC -o .libs/getopt1.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o >/dev/null 2>&1 mv -f .deps/getopt1.Tpo .deps/getopt1.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o libcoot-compat.la getopt.lo getopt1.lo libtool: link: ar cru .libs/libcoot-compat.a .libs/getopt.o .libs/getopt1.o libtool: link: ranlib .libs/libcoot-compat.a libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat' Making all in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o >/dev/null 2>&1 mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o >/dev/null 2>&1 mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -o atomic-numbers.o >/dev/null 2>&1 mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c -o gdk-keysyms.lo gdk-keysyms.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -o gdk-keysyms.o >/dev/null 2>&1 mv -f .deps/gdk-keysyms.Tpo .deps/gdk-keysyms.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-utils.la coot-utils.lo coot-fasta.lo atomic-numbers.lo gdk-keysyms.lo libtool: link: ar cru .libs/libcoot-utils.a .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/gdk-keysyms.o libtool: link: ranlib .libs/libcoot-utils.a libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils' Making all in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c -o protein_db.lo protein_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -o protein_db.o >/dev/null 2>&1 mv -f .deps/protein_db.Tpo .deps/protein_db.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c -o protein_db_utils.lo protein_db_utils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -o protein_db_utils.o >/dev/null 2>&1 mv -f .deps/protein_db_utils.Tpo .deps/protein_db_utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp -fPIC -DPIC -o .libs/rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp -o rna_db.o >/dev/null 2>&1 mv -f .deps/rna_db.Tpo .deps/rna_db.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-protein-db.la protein_db.lo protein_db_utils.lo rna_db.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: ar cru .libs/libcoot-protein-db.a .libs/protein_db.o .libs/protein_db_utils.o .libs/rna_db.o libtool: link: ranlib .libs/libcoot-protein-db.a libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' Making all in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" 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-DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c energy-lib.cc -o energy-lib.o >/dev/null 2>&1 mv -f .deps/energy-lib.Tpo .deps/energy-lib.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc -o lbg-graph.o >/dev/null 2>&1 mv -f .deps/lbg-graph.Tpo .deps/lbg-graph.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-geometry.la protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo lbg-graph.lo ../utils/libcoot-utils.la -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-geometry.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/geometry/../utils/.libs/libcoot-utils.a") libtool: link: ar cru .libs/libcoot-geometry.a .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/lbg-graph.o .libs/libcoot-geometry.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-geometry.lax/libcoot-utils.a/gdk-keysyms.o libtool: link: ranlib .libs/libcoot-geometry.a libtool: link: rm -fr .libs/libcoot-geometry.lax libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-geometry.o -MD -MP -MF .deps/test-geometry.Tpo -c -o test-geometry.o test-geometry.cc mv -f .deps/test-geometry.Tpo .deps/test-geometry.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-read-components.o -MD -MP -MF .deps/test-read-components.Tpo -c -o test-read-components.o test-read-components.cc mv -f .deps/test-read-components.Tpo .deps/test-read-components.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry' Making all in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o >/dev/null 2>&1 mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o >/dev/null 2>&1 mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -o atom-quads.o >/dev/null 2>&1 mv -f .deps/atom-quads.Tpo .deps/atom-quads.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-mini-mol.la mini-mol.lo mini-mol-utils.lo atom-quads.lo -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcoot-mini-mol.a .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o libtool: link: ranlib .libs/libcoot-mini-mol.a libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT testminimol.o -MD -MP -MF .deps/testminimol.Tpo -c -o testminimol.o testminimol.cc mv -f .deps/testminimol.Tpo .deps/testminimol.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o testminimol testminimol.o libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o testminimol testminimol.o ./.libs/libcoot-mini-mol.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' Making all in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c -o coot-coord-utils.lo coot-coord-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" 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"/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt1-atomic-numbers.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt2-coot-utils.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt2-coot-utils.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-utils.lax/lt3-coot-fasta.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-utils.lax/lt3-coot-fasta.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt4-gdk-keysyms.o || cp 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.deps/lsq-improve.Tpo -c -o lsq-improve.lo lsq-improve.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c lsq-improve.cc -fPIC -DPIC -o .libs/lsq-improve.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 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-I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -o coot-map-heavy.o >/dev/null 2>&1 mv -f .deps/coot-map-heavy.Tpo .deps/coot-map-heavy.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c -o coot-fffear.lo coot-fffear.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -o coot-fffear.o >/dev/null 2>&1 mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-map-heavy.la coot-map-heavy.lo coot-fffear.lo ../mini-mol/libcoot-mini-mol.la libcoot-map-utils.la libcoot-coord-utils.la ../utils/libcoot-utils.la -L/usr/lib -lgsl -lgslcblas -lm libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-map-utils.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/./.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-utils/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt2-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/lt3-energy-lib.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/lt3-energy-lib.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt4-lt4-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt4-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt5-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt5-coot-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/lt6-protein-geometry.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/lt6-protein-geometry.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt7-coot-coord-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt7-coot-coord-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/lt8-lt3-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/lt8-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt9-protein-geometry-mmdb.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt9-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt10-lt1-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt10-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt11-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt11-coot-fasta.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt12-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt12-gdk-keysyms.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/lt13-lbg-graph.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/lt13-lbg-graph.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt14-coot-h-bonds.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt14-coot-h-bonds.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt15-coot-coord-utils-nucleotides.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt15-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt16-read-sbase.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt16-read-sbase.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-map-heavy.lax/lt17-coot-rama.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-map-heavy.lax/lt17-coot-rama.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-map-heavy.lax/lt18-lt2-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-map-heavy.lax/lt18-lt2-coot-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt19-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt19-atomic-numbers.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt21-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt21-coot-fasta.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt22-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt22-gdk-keysyms.o libtool: link: ar cru .libs/libcoot-map-heavy.a .libs/coot-map-heavy.o .libs/coot-fffear.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-map-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/peak-search-from-list.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt4-gdk-keysyms.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/trim.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt1-atomic-numbers.o 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.libs/libcoot-map-heavy.lax/lt9-protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt10-lt1-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt11-coot-fasta.o .libs/libcoot-map-heavy.lax/lt12-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt13-lbg-graph.o .libs/libcoot-map-heavy.lax/lt14-coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt16-read-sbase.o .libs/libcoot-map-heavy.lax/lt17-coot-rama.o .libs/libcoot-map-heavy.lax/lt18-lt2-coot-utils.o .libs/libcoot-map-heavy.lax/lt19-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o .libs/libcoot-map-heavy.lax/lt21-coot-fasta.o .libs/libcoot-map-heavy.lax/lt22-gdk-keysyms.o libtool: link: ranlib .libs/libcoot-map-heavy.a libtool: link: rm -fr .libs/libcoot-map-heavy.lax .libs/libcoot-map-heavy.lax libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-shelx-reader.o -MD -MP -MF .deps/test-shelx-reader.Tpo -c -o test-shelx-reader.o test-shelx-reader.cc mv -f .deps/test-shelx-reader.Tpo .deps/test-shelx-reader.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-utils.o -MD -MP -MF .deps/test-utils.Tpo -c -o test-utils.o test-utils.cc mv -f .deps/test-utils.Tpo .deps/test-utils.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-extras.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testcootutils test-utils.o ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-extras.a ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' Making all in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" 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-DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -o CXXSphereNode.o >/dev/null 2>&1 mv -f .deps/CXXSphereNode.Tpo .deps/CXXSphereNode.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c -o CXXSphereTriangle.lo CXXSphereTriangle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp -o CXXSphereTriangle.o >/dev/null 2>&1 mv -f 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-DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -o CXXCircleNode.o >/dev/null 2>&1 mv -f .deps/CXXCircleNode.Tpo .deps/CXXCircleNode.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c -o CXXSphereTriangleEdge.lo CXXSphereTriangleEdge.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -o CXXSphereTriangleEdge.o >/dev/null 2>&1 mv -f .deps/CXXSphereTriangleEdge.Tpo .deps/CXXSphereTriangleEdge.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c -o CXXCoord.lo CXXCoord.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp -fPIC -DPIC -o .libs/CXXCoord.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp -o CXXCoord.o >/dev/null 2>&1 mv -f .deps/CXXCoord.Tpo .deps/CXXCoord.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c -o CXXSurface.lo CXXSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c CXXTriangle.cpp -fPIC -DPIC -o .libs/CXXTriangle.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils 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"-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -o CXXQADSurface.o >/dev/null 2>&1 mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c -o CXXBall.lo CXXBall.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o >/dev/null 2>&1 mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c -o CXXUtils.lo CXXUtils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -o CXXUtils.o >/dev/null 2>&1 mv -f .deps/CXXUtils.Tpo .deps/CXXUtils.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o libccp4mg-surface.la CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: ar cru .libs/libccp4mg-surface.a .libs/CXXSphereElement.o .libs/CXXChargeTable.o .libs/CXXSphereNode.o .libs/CXXCircle.o .libs/CXXSphereTriangle.o .libs/CXXCircleNode.o .libs/CXXSphereTriangleEdge.o .libs/CXXCoord.o .libs/CXXSurface.o .libs/CXXCreator.o .libs/CXXSurfaceVertex.o .libs/CXXException.o .libs/CXXTorusElement.o .libs/CXXFFTSolventMap.o .libs/CXXTorusNode.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXTriangle.o .libs/CXXNode.o .libs/CXXQADSurface.o .libs/CXXBall.o .libs/CXXQADSurfaceStaticData.o .libs/CXXSpace.o .libs/CXXUtils.o libtool: link: ranlib .libs/libccp4mg-surface.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-surface.la" && ln -s "../libccp4mg-surface.la" "libccp4mg-surface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface' Making all in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -fPIC -DPIC -o .libs/coot-surface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o >/dev/null 2>&1 mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -fPIC -DPIC -o .libs/rgbreps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o >/dev/null 2>&1 mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-surface.la coot-surface.lo rgbreps.lo ../surface/libccp4mg-surface.la -lglut -lXmu -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-surface.lax/libccp4mg-surface.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coot-surface/../surface/.libs/libccp4mg-surface.a") libtool: link: ar cru .libs/libcoot-surface.a .libs/coot-surface.o .libs/rgbreps.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFortranFile.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangleEdge.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFFTSolventMap.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXChargeTable.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCreator.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurfaceStaticData.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNewHood.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircleNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurfaceVertex.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXBall.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXUtils.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSpace.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXException.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCoord.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereNode.o libtool: link: ranlib .libs/libcoot-surface.a libtool: link: rm -fr .libs/libcoot-surface.lax libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' Making all in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c -o lbg-molfile.lo lbg-molfile.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -fPIC -DPIC -o .libs/lbg-molfile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -o lbg-molfile.o >/dev/null 2>&1 mv -f .deps/lbg-molfile.Tpo .deps/lbg-molfile.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c -o lig-build.lo lig-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -o lig-build.o >/dev/null 2>&1 mv -f .deps/lig-build.Tpo .deps/lig-build.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-lidia-core.la lbg-molfile.lo lig-build.lo libtool: link: ar cru .libs/libcoot-lidia-core.a .libs/lbg-molfile.o .libs/lig-build.o libtool: link: ranlib .libs/libcoot-lidia-core.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' Making all in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH 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-DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c -o Bond_lines_ext.lo Bond_lines_ext.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -o Bond_lines_ext.o >/dev/null 2>&1 mv -f .deps/Bond_lines_ext.Tpo .deps/Bond_lines_ext.Plo /bin/bash ../libtool --tag=CXX 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o >/dev/null 2>&1 mv -f .deps/coot-close.Tpo .deps/coot-close.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-coords.la Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-coords.lax/libcoot-lidia-core.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../lidia-core/.libs/libcoot-lidia-core.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-shelx.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../coot-utils/.libs/libcoot-shelx.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../utils/.libs/libcoot-utils.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/coords/../mini-mol/.libs/libcoot-mini-mol.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt1-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt2-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt2-energy-lib.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt3-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o .libs/libcoot-coords.lax/lt4-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o 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link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-coot-utils.o .libs/libcoot-coords.lax/lt9-lt3-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-coot-utils.o .libs/libcoot-coords.lax/lt9-lt3-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt10-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt10-lbg-graph.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt11-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt11-read-sbase.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt12-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt12-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt13-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt13-energy-lib.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-coords.lax/lt14-lt4-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-coords.lax/lt14-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt15-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt15-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt16-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt16-protein-geometry.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt17-coot-coord-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt17-coot-coord-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/lt18-lt3-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/lt18-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt19-protein-geometry-mmdb.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt19-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt20-lt1-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt20-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt22-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt22-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt23-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt23-lbg-graph.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt24-coot-h-bonds.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt24-coot-h-bonds.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt25-coot-coord-utils-nucleotides.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt25-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt26-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt26-read-sbase.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt27-coot-rama.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt27-coot-rama.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt28-lt2-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt28-lt2-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt29-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt29-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt31-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt31-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt32-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt32-gdk-keysyms.o libtool: link: ar cru .libs/libcoot-coords.a .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lbg-molfile.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lig-build.o .libs/libcoot-coords.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-coords.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-coords.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-coords.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-coords.lax/lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt2-energy-lib.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-coot-fasta.o .libs/libcoot-coords.lax/lt3-coot-utils.o .libs/libcoot-coords.lax/lt4-protein-geometry.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt5-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-coot-fasta.o .libs/libcoot-coords.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt6-lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt7-coot-fasta.o .libs/libcoot-coords.lax/lt8-gdk-keysyms.o .libs/libcoot-coords.lax/lt9-lt3-coot-utils.o .libs/libcoot-coords.lax/lt10-lbg-graph.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-h-bonds.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-shelx-ins.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-atomic-numbers.o .libs/libcoot-coords.lax/lt11-read-sbase.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-rama.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt12-atomic-numbers.o .libs/libcoot-coords.lax/lt13-energy-lib.o .libs/libcoot-coords.lax/lt14-lt4-gdk-keysyms.o .libs/libcoot-coords.lax/lt15-coot-utils.o .libs/libcoot-coords.lax/lt16-protein-geometry.o .libs/libcoot-coords.lax/lt17-coot-coord-utils.o .libs/libcoot-coords.lax/lt18-lt3-coot-fasta.o .libs/libcoot-coords.lax/lt19-protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt20-lt1-atomic-numbers.o .libs/libcoot-coords.lax/lt21-coot-fasta.o .libs/libcoot-coords.lax/lt22-gdk-keysyms.o .libs/libcoot-coords.lax/lt23-lbg-graph.o .libs/libcoot-coords.lax/lt24-coot-h-bonds.o .libs/libcoot-coords.lax/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt26-read-sbase.o .libs/libcoot-coords.lax/lt27-coot-rama.o .libs/libcoot-coords.lax/lt28-lt2-coot-utils.o .libs/libcoot-coords.lax/lt29-atomic-numbers.o .libs/libcoot-coords.lax/lt30-coot-utils.o .libs/libcoot-coords.lax/lt31-coot-fasta.o .libs/libcoot-coords.lax/lt32-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol-utils.o libtool: link: ranlib .libs/libcoot-coords.a libtool: link: rm -fr .libs/libcoot-coords.lax .libs/libcoot-coords.lax libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords' Making all in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -Wl,-Bsymbolic-functions -o libcoot-AngleInfo.la libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: ar cru .libs/libcoot-AngleInfo.a .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: link: ranlib .libs/libcoot-AngleInfo.a libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles' Making all in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c -o dm-utils.lo dm-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -o dm-utils.o >/dev/null 2>&1 mv -f .deps/dm-utils.Tpo .deps/dm-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c -o graphical_skel.lo graphical_skel.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -o graphical_skel.o >/dev/null 2>&1 mv -f .deps/graphical_skel.Tpo .deps/graphical_skel.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -o BuildCas.o >/dev/null 2>&1 mv -f .deps/BuildCas.Tpo .deps/BuildCas.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-skeleton.la dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../angles/.libs/libcoot-AngleInfo.a") libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/skeleton/../coords/.libs/libcoot-coords.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt1-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt2-energy-lib.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt2-energy-lib.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt3-coot-utils.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt4-protein-geometry.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt4-protein-geometry.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt6-lt1-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt6-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt9-gdk-keysyms.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt9-gdk-keysyms.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt6-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt10-lt6-lt1-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt6-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt10-lt6-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-skeleton.lax/lt11-lt3-coot-utils.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-skeleton.lax/lt11-lt3-coot-utils.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt12-lbg-graph.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt12-lbg-graph.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-skeleton.lax/lt13-lt4-protein-geometry.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-skeleton.lax/lt13-lt4-protein-geometry.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt14-lt5-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt14-lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-energy-lib.o .libs/libcoot-skeleton.lax/lt15-lt2-energy-lib.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-energy-lib.o .libs/libcoot-skeleton.lax/lt15-lt2-energy-lib.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt16-read-sbase.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt16-read-sbase.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/lt17-lt7-coot-fasta.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/lt17-lt7-coot-fasta.o libtool: link: ar cru .libs/libcoot-skeleton.a .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-skeleton.lax/lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt15-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt18-lt3-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt16-protein-geometry.o .libs/libcoot-skeleton.lax/lt2-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt14-lt4-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-skeleton.lax/lt3-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt29-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt9-lt3-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt31-coot-fasta.o .libs/libcoot-skeleton.lax/lt4-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt26-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt27-coot-rama.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt8-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt11-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt20-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt17-coot-coord-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt13-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt32-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt6-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt10-lbg-graph.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-skeleton.lax/lt9-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt22-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt10-lt6-lt1-atomic-numbers.o .libs/libcoot-skeleton.lax/lt11-lt3-coot-utils.o .libs/libcoot-skeleton.lax/lt12-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt24-coot-h-bonds.o .libs/libcoot-skeleton.lax/lt13-lt4-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-skeleton.lax/lt14-lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-close.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt19-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-skeleton.lax/lt15-lt2-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt12-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/utils.o .libs/libcoot-skeleton.lax/lt16-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lig-build.o .libs/libcoot-skeleton.lax/lt17-lt7-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt23-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt28-lt2-coot-utils.o libtool: link: ranlib .libs/libcoot-skeleton.a libtool: link: rm -fr .libs/libcoot-skeleton.lax .libs/libcoot-skeleton.lax libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' Making all in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c -o cartesian.lo cartesian.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -o cartesian.o >/dev/null 2>&1 mv -f .deps/cartesian.Tpo .deps/cartesian.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o >/dev/null 2>&1 mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libccp4mg-utils.la geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng libtool: link: ar cru .libs/libccp4mg-utils.a .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o libtool: link: ranlib .libs/libccp4mg-utils.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' Making all in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo Vectors.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o >/dev/null 2>&1 mv -f .deps/Vectors.Tpo .deps/Vectors.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o >/dev/null 2>&1 mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo density-contour-triangles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -o density-contour-triangles.o >/dev/null 2>&1 mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-isosurface.la Vectors.lo CIsoSurface.lo density-contour-triangles.lo ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-isosurface.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/density-contour/../coords/.libs/libcoot-coords.a") libtool: link: ar cru .libs/libcoot-isosurface.a .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt15-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt18-lt3-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt16-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt14-lt4-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt29-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt9-lt3-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt31-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt26-read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt27-coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt8-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt11-read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt20-lt1-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt17-coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt13-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt32-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt10-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-isosurface.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt22-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt6-lt1-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt24-coot-h-bonds.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-close.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt19-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt12-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lig-build.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt23-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt28-lt2-coot-utils.o libtool: link: ranlib .libs/libcoot-isosurface.a libtool: link: rm -fr .libs/libcoot-isosurface.lax libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' Making all in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c -o db-main.lo db-main.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -fPIC -DPIC -o .libs/db-main.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -o db-main.o >/dev/null 2>&1 mv -f .deps/db-main.Tpo .deps/db-main.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c -o db-strands.lo db-strands.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o >/dev/null 2>&1 mv -f .deps/db-strands.Tpo .deps/db-strands.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-db-main.la db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/db-main/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt3-coot-utils.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt5-gdk-keysyms.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt5-gdk-keysyms.o libtool: link: ar cru .libs/libcoot-db-main.a .libs/db-main.o .libs/db-strands.o 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.libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-db-main.lax/lt2-atomic-numbers.o .libs/libcoot-db-main.lax/lt3-coot-utils.o .libs/libcoot-db-main.lax/lt4-coot-fasta.o .libs/libcoot-db-main.lax/lt5-gdk-keysyms.o libtool: link: ranlib .libs/libcoot-db-main.a libtool: link: rm -fr .libs/libcoot-db-main.lax .libs/libcoot-db-main.lax libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT testdbmain.o -MD -MP -MF .deps/testdbmain.Tpo -c -o testdbmain.o testdbmain.cc mv -f .deps/testdbmain.Tpo .deps/testdbmain.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT train-pepflip.o -MD -MP -MF .deps/train-pepflip.Tpo -c -o train-pepflip.o train-pepflip.cc mv -f .deps/train-pepflip.Tpo .deps/train-pepflip.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main' Making all in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints.lo -MD -MP -MF .deps/extra-restraints.Tpo -c extra-restraints.cc -o extra-restraints.o >/dev/null 2>&1 mv -f .deps/extra-restraints.Tpo .deps/extra-restraints.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c -o pepflip.lo pepflip.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc -o pepflip.o >/dev/null 2>&1 mv -f .deps/pepflip.Tpo .deps/pepflip.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c -o regularize-minimol.lo regularize-minimol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc -o regularize-minimol.o >/dev/null 2>&1 mv -f .deps/regularize-minimol.Tpo .deps/regularize-minimol.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c -o lograma.lo lograma.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c lograma.cpp -fPIC -DPIC -o .libs/lograma.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT lograma.lo -MD -MP -MF .deps/lograma.Tpo -c lograma.cpp -o lograma.o >/dev/null 2>&1 mv -f .deps/lograma.Tpo .deps/lograma.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c -o extra-restraints-kk.lo extra-restraints-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c extra-restraints-kk.cc -fPIC -DPIC -o .libs/extra-restraints-kk.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT extra-restraints-kk.lo -MD -MP -MF .deps/extra-restraints-kk.Tpo -c extra-restraints-kk.cc -o extra-restraints-kk.o >/dev/null 2>&1 mv -f .deps/extra-restraints-kk.Tpo .deps/extra-restraints-kk.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c -o simple-restraint-kk.lo simple-restraint-kk.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c simple-restraint-kk.cc -fPIC -DPIC -o .libs/simple-restraint-kk.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint-kk.lo -MD -MP -MF .deps/simple-restraint-kk.Tpo -c simple-restraint-kk.cc -o simple-restraint-kk.o >/dev/null 2>&1 mv -f .deps/simple-restraint-kk.Tpo .deps/simple-restraint-kk.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o libcoot-ideal.la simple-restraint.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo extra-restraints-kk.lo simple-restraint-kk.lo ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../coot-utils/.libs/libcoot-coord-extras.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../utils/.libs/libcoot-utils.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ideal/../mini-mol/.libs/libcoot-mini-mol.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt1-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt2-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt2-energy-lib.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt3-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt6-lt1-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt6-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt8-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt8-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ideal.lax/lt9-lt3-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ideal.lax/lt9-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt10-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt10-lbg-graph.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt11-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt11-read-sbase.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt12-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt12-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt13-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt13-energy-lib.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ideal.lax/lt14-lt4-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ideal.lax/lt14-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt15-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt15-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt16-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt16-protein-geometry.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt17-coot-coord-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt17-coot-coord-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt18-lt3-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt18-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt19-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt19-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt20-lt1-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt20-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt22-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt22-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt23-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt23-lbg-graph.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt24-coot-h-bonds.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt24-coot-h-bonds.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt26-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt26-read-sbase.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt27-coot-rama.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt27-coot-rama.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt28-lt2-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt28-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt29-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt29-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt31-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt31-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt32-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt32-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt33-atom-quads.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt33-atom-quads.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt34-mini-mol.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt34-mini-mol.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o libtool: link: ar cru .libs/libcoot-ideal.a .libs/simple-restraint.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/extra-restraints-kk.o .libs/simple-restraint-kk.o .libs/libcoot-ideal.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ideal.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ideal.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ideal.lax/lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt2-energy-lib.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ideal.lax/lt3-coot-utils.o .libs/libcoot-ideal.lax/lt4-protein-geometry.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt5-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt6-lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o .libs/libcoot-ideal.lax/lt8-gdk-keysyms.o .libs/libcoot-ideal.lax/lt9-lt3-coot-utils.o .libs/libcoot-ideal.lax/lt10-lbg-graph.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ideal.lax/lt11-read-sbase.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt12-atomic-numbers.o .libs/libcoot-ideal.lax/lt13-energy-lib.o .libs/libcoot-ideal.lax/lt14-lt4-gdk-keysyms.o .libs/libcoot-ideal.lax/lt15-coot-utils.o .libs/libcoot-ideal.lax/lt16-protein-geometry.o .libs/libcoot-ideal.lax/lt17-coot-coord-utils.o .libs/libcoot-ideal.lax/lt18-lt3-coot-fasta.o .libs/libcoot-ideal.lax/lt19-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt20-lt1-atomic-numbers.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o .libs/libcoot-ideal.lax/lt22-gdk-keysyms.o .libs/libcoot-ideal.lax/lt23-lbg-graph.o .libs/libcoot-ideal.lax/lt24-coot-h-bonds.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt26-read-sbase.o .libs/libcoot-ideal.lax/lt27-coot-rama.o .libs/libcoot-ideal.lax/lt28-lt2-coot-utils.o .libs/libcoot-ideal.lax/lt29-atomic-numbers.o .libs/libcoot-ideal.lax/lt30-coot-utils.o .libs/libcoot-ideal.lax/lt31-coot-fasta.o .libs/libcoot-ideal.lax/lt32-gdk-keysyms.o .libs/libcoot-ideal.lax/lt33-atom-quads.o .libs/libcoot-ideal.lax/lt34-mini-mol.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o libtool: link: ranlib .libs/libcoot-ideal.a libtool: link: rm -fr .libs/libcoot-ideal.lax .libs/libcoot-ideal.lax libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT with-geometry.o -MD -MP -MF .deps/with-geometry.Tpo -c -o with-geometry.o with-geometry.cc mv -f .deps/with-geometry.Tpo .deps/with-geometry.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib 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../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la ../mini-mol/libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o with-map with-map.o -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a ../mini-mol/.libs/libcoot-mini-mol.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT logramatest.o -MD -MP -MF .deps/logramatest.Tpo -c -o logramatest.o logramatest.cpp mv -f .deps/logramatest.Tpo .deps/logramatest.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o logramatest logramatest.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o logramatest logramatest.o -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lgsl -lgslcblas -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal' Making all in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" 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libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c ideal-rna.cc -o ideal-rna.o >/dev/null 2>&1 mv -f .deps/ideal-rna.Tpo .deps/ideal-rna.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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"-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rotamer-tables.lo -MD -MP -MF .deps/rotamer-tables.Tpo -c rotamer-tables.cc -o rotamer-tables.o >/dev/null 2>&1 mv -f .deps/rotamer-tables.Tpo .deps/rotamer-tables.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" 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-I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c -o base-pairing.lo base-pairing.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c base-pairing.cc -fPIC -DPIC -o .libs/base-pairing.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c 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backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -o backrub-rotamer.o >/dev/null 2>&1 mv -f .deps/backrub-rotamer.Tpo .deps/backrub-rotamer.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-ligand.la ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo ../ideal/libcoot-ideal.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-ideal.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../ideal/.libs/libcoot-ideal.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-db-main.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../db-main/.libs/libcoot-db-main.a") libtool: link: (cd .libs/libcoot-ligand.lax/libccp4mg-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../ccp4mg-utils/.libs/libccp4mg-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coords/.libs/libcoot-coords.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-coord-extras.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../coot-utils/.libs/libcoot-map-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/ligand/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt4-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt4-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt5-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt5-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt6-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt6-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt7-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt7-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt8-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt8-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt9-lt5-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt9-lt5-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt10-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt10-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt11-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt11-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt12-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt12-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt13-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt13-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt14-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt14-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt15-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt15-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt16-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt16-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt17-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt17-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt18-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt18-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt19-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt19-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt20-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt20-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt21-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt21-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt22-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt22-lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt23-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt23-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt24-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt24-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt25-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt25-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt26-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt26-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt27-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt27-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt28-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt28-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt29-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt29-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt30-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt30-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt31-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt31-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt32-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt32-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt33-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt33-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt34-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt34-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt35-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt35-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt37-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt37-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt38-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt38-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt39-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt39-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-coot-utils.o .libs/libcoot-ligand.lax/lt40-lt15-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-coot-utils.o .libs/libcoot-ligand.lax/lt40-lt15-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt41-lt18-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt41-lt18-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-protein-geometry.o .libs/libcoot-ligand.lax/lt42-lt16-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-protein-geometry.o .libs/libcoot-ligand.lax/lt42-lt16-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt43-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt43-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt44-lt14-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt44-lt14-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt45-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt45-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt46-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt46-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt47-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt47-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-atomic-numbers.o .libs/libcoot-ligand.lax/lt48-lt29-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-atomic-numbers.o .libs/libcoot-ligand.lax/lt48-lt29-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-lt3-coot-utils.o .libs/libcoot-ligand.lax/lt49-lt9-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-lt3-coot-utils.o .libs/libcoot-ligand.lax/lt49-lt9-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt31-coot-fasta.o .libs/libcoot-ligand.lax/lt50-lt31-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt31-coot-fasta.o .libs/libcoot-ligand.lax/lt50-lt31-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt51-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt51-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt52-lt5-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt52-lt5-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-read-sbase.o .libs/libcoot-ligand.lax/lt53-lt26-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-read-sbase.o .libs/libcoot-ligand.lax/lt53-lt26-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-coot-rama.o .libs/libcoot-ligand.lax/lt54-lt27-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-coot-rama.o .libs/libcoot-ligand.lax/lt54-lt27-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-gdk-keysyms.o .libs/libcoot-ligand.lax/lt55-lt8-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-gdk-keysyms.o .libs/libcoot-ligand.lax/lt55-lt8-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-read-sbase.o .libs/libcoot-ligand.lax/lt56-lt11-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-read-sbase.o .libs/libcoot-ligand.lax/lt56-lt11-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt57-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt57-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt58-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt58-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt59-lt20-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt59-lt20-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt60-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt60-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-coot-coord-utils.o .libs/libcoot-ligand.lax/lt61-lt17-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-coot-coord-utils.o .libs/libcoot-ligand.lax/lt61-lt17-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-energy-lib.o .libs/libcoot-ligand.lax/lt62-lt13-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-energy-lib.o .libs/libcoot-ligand.lax/lt62-lt13-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt32-gdk-keysyms.o .libs/libcoot-ligand.lax/lt63-lt32-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt32-gdk-keysyms.o .libs/libcoot-ligand.lax/lt63-lt32-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt64-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt64-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-lbg-graph.o .libs/libcoot-ligand.lax/lt65-lt10-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-lbg-graph.o .libs/libcoot-ligand.lax/lt65-lt10-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt66-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt66-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt67-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt67-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-gdk-keysyms.o .libs/libcoot-ligand.lax/lt68-lt22-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-gdk-keysyms.o .libs/libcoot-ligand.lax/lt68-lt22-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt69-lt6-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt69-lt6-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt70-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt70-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt71-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt71-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-coot-h-bonds.o .libs/libcoot-ligand.lax/lt72-lt24-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-coot-h-bonds.o .libs/libcoot-ligand.lax/lt72-lt24-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-ligand.lax/lt73-lt4-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-protein-geometry.o .libs/libcoot-ligand.lax/lt73-lt4-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt74-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt74-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt75-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt75-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt76-lt5-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt76-lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt77-lt21-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt77-lt21-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt78-lt25-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt78-lt25-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt79-lt19-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt79-lt19-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-energy-lib.o .libs/libcoot-ligand.lax/lt80-lt2-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-energy-lib.o .libs/libcoot-ligand.lax/lt80-lt2-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt81-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt81-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt82-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt82-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt83-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt83-lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-atomic-numbers.o .libs/libcoot-ligand.lax/lt84-lt12-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-atomic-numbers.o .libs/libcoot-ligand.lax/lt84-lt12-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt85-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt85-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt86-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt86-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt87-lt30-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt87-lt30-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt88-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt88-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-ligand.lax/lt89-lt7-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-ligand.lax/lt89-lt7-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt90-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt90-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-lbg-graph.o .libs/libcoot-ligand.lax/lt91-lt23-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-lbg-graph.o .libs/libcoot-ligand.lax/lt91-lt23-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt92-lt28-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt92-lt28-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt93-coot-coord-lsq.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt93-coot-coord-lsq.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt94-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt94-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt95-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt95-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt96-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt96-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt97-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt97-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt98-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt98-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt99-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt99-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt100-lt5-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt100-lt5-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt101-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt101-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt102-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt102-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt103-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt103-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt104-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt104-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt105-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt105-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt106-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt106-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt107-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt107-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt108-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt108-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt109-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt109-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt110-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt110-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt111-water-coordination.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt111-water-coordination.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt112-coot-tree-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt112-coot-tree-extras.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt113-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt113-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt114-lsq-improve.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt114-lsq-improve.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt115-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt115-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt117-coot-coord-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt117-coot-coord-extras.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt118-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt118-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt119-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt119-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt120-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt120-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt121-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt121-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt122-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt122-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt123-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt123-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt124-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt124-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt125-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt125-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt126-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt126-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt127-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt127-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt128-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt128-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt129-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt129-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt130-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt130-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt131-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt131-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt132-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt132-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt133-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt133-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt134-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt134-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt135-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt135-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt136-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt136-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt137-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt137-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt138-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt138-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt139-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt139-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt140-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt140-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt141-lt4-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt141-lt4-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt142-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt142-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt143-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt143-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt144-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt144-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt145-lt3-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt145-lt3-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt146-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt146-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt147-lt1-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt147-lt1-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt148-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt148-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt149-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt149-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt150-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt150-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt151-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt151-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt152-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt152-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt153-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt153-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt154-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt154-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt155-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt155-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt156-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt156-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt157-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt157-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt159-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt159-gdk-keysyms.o libtool: link: ar cru .libs/libcoot-ligand.a .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/libcoot-ideal.a/atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt15-coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt18-lt3-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt16-protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/regularize-minimol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/simple-restraint.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt34-mini-mol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt14-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt29-atomic-numbers.o 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.libs/libcoot-ligand.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-ligand.lax/libcoot-coords.a/coot-close.o .libs/libcoot-ligand.lax/lt79-lt19-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-ligand.lax/lt80-lt2-energy-lib.o .libs/libcoot-ligand.lax/lt81-mini-mol.o .libs/libcoot-ligand.lax/lt82-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt83-lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt84-lt12-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-coords.a/utils.o .libs/libcoot-ligand.lax/lt85-read-sbase.o .libs/libcoot-ligand.lax/lt86-mini-mol-utils.o .libs/libcoot-ligand.lax/lt87-lt30-coot-utils.o .libs/libcoot-ligand.lax/lt88-coot-rama.o .libs/libcoot-ligand.lax/libcoot-coords.a/lig-build.o .libs/libcoot-ligand.lax/lt89-lt7-coot-fasta.o .libs/libcoot-ligand.lax/lt90-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt91-lt23-lbg-graph.o .libs/libcoot-ligand.lax/lt92-lt28-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt93-coot-coord-lsq.o .libs/libcoot-ligand.lax/lt94-atomic-numbers.o .libs/libcoot-ligand.lax/lt95-energy-lib.o .libs/libcoot-ligand.lax/lt96-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt97-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt98-coot-utils.o .libs/libcoot-ligand.lax/lt99-protein-geometry.o .libs/libcoot-ligand.lax/lt100-lt5-gdk-keysyms.o .libs/libcoot-ligand.lax/lt101-coot-coord-utils.o .libs/libcoot-ligand.lax/lt102-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt103-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt104-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt105-coot-fasta.o .libs/libcoot-ligand.lax/lt106-gdk-keysyms.o .libs/libcoot-ligand.lax/lt107-lt3-coot-utils.o .libs/libcoot-ligand.lax/lt108-lbg-graph.o .libs/libcoot-ligand.lax/lt109-atom-quads.o .libs/libcoot-ligand.lax/lt110-coot-h-bonds.o .libs/libcoot-ligand.lax/lt111-water-coordination.o .libs/libcoot-ligand.lax/lt112-coot-tree-extras.o .libs/libcoot-ligand.lax/lt113-mini-mol.o .libs/libcoot-ligand.lax/lt114-lsq-improve.o .libs/libcoot-ligand.lax/lt115-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt116-lt2-atomic-numbers.o .libs/libcoot-ligand.lax/lt117-coot-coord-extras.o .libs/libcoot-ligand.lax/lt118-read-sbase.o .libs/libcoot-ligand.lax/lt119-mini-mol-utils.o .libs/libcoot-ligand.lax/lt120-coot-rama.o .libs/libcoot-ligand.lax/lt121-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt122-atomic-numbers.o .libs/libcoot-ligand.lax/lt123-energy-lib.o .libs/libcoot-ligand.lax/lt124-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt125-coot-utils.o .libs/libcoot-ligand.lax/lt126-protein-geometry.o .libs/libcoot-ligand.lax/lt127-coot-coord-utils.o .libs/libcoot-ligand.lax/lt128-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt129-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt130-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt131-coot-fasta.o .libs/libcoot-ligand.lax/lt132-gdk-keysyms.o .libs/libcoot-ligand.lax/lt133-lbg-graph.o .libs/libcoot-ligand.lax/lt134-coot-h-bonds.o .libs/libcoot-ligand.lax/lt135-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt136-read-sbase.o .libs/libcoot-ligand.lax/lt137-coot-rama.o .libs/libcoot-ligand.lax/lt138-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt139-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-map-utils.o .libs/libcoot-ligand.lax/lt140-energy-lib.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/peak-search-from-list.o .libs/libcoot-ligand.lax/lt141-lt4-gdk-keysyms.o .libs/libcoot-ligand.lax/lt142-coot-utils.o .libs/libcoot-ligand.lax/lt143-protein-geometry.o .libs/libcoot-ligand.lax/lt144-coot-coord-utils.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/trim.o .libs/libcoot-ligand.lax/lt145-lt3-coot-fasta.o .libs/libcoot-ligand.lax/lt146-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt147-lt1-atomic-numbers.o .libs/libcoot-ligand.lax/lt148-coot-fasta.o .libs/libcoot-ligand.lax/lt149-gdk-keysyms.o .libs/libcoot-ligand.lax/lt150-lbg-graph.o .libs/libcoot-ligand.lax/lt151-coot-h-bonds.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/peak-search.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/xmap-stats.o .libs/libcoot-ligand.lax/lt152-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt153-read-sbase.o .libs/libcoot-ligand.lax/lt154-coot-rama.o .libs/libcoot-ligand.lax/lt155-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt156-atomic-numbers.o .libs/libcoot-ligand.lax/lt157-coot-utils.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o .libs/libcoot-ligand.lax/lt159-gdk-keysyms.o libtool: link: ranlib .libs/libcoot-ligand.a libtool: link: rm -fr .libs/libcoot-ligand.lax .libs/libcoot-ligand.lax libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o findligand-real find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la 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-DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc mv -f .deps/find-waters.Tpo .deps/find-waters.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o ./.libs/libcoot-ligand.a -L/usr/lib -L/usr ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../db-main/.libs/libcoot-db-main.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-shelx.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand' Making all in high-res make[2]: Entering directory 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -o sequence-assignment.o >/dev/null 2>&1 mv -f .deps/sequence-assignment.Tpo .deps/sequence-assignment.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -g -O2 -Wl,-Bsymbolic-functions -o libcoot-high-res.la high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3470/high-res/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-ligand.a && ar x "/build/buildd/coot-0.7pre1+svn3470/high-res/../ligand/.libs/libcoot-ligand.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt1-atom-quads.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt1-atom-quads.o libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt2-mini-mol.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt2-mini-mol.o libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt3-mini-mol-utils.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt3-mini-mol-utils.o libtool: link: ar cru .libs/libcoot-high-res.a .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-coord-lsq.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt33-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt123-energy-lib.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt16-lt3-coot-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt105-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt135-coot-coord-utils-nucleotides.o 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.libs/libcoot-high-res.lax/libcoot-ligand.a/lt101-coot-coord-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt96-lt4-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt103-protein-geometry-mmdb.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt81-mini-mol.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt17-coot-coord-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt13-energy-lib.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt145-lt3-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt143-protein-geometry.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt13-lt1-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt32-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt1-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt17-lbg-graph.o .libs/libcoot-high-res.lax/libcoot-ligand.a/rigid-body.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt10-lbg-graph.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt134-coot-h-bonds.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/mmdb-extras.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt109-atom-quads.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt65-lt10-lbg-graph.o .libs/libcoot-high-res.lax/libcoot-ligand.a/gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt102-lt3-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt110-coot-h-bonds.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt22-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt5-lt4-gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt35-mini-mol-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt150-lbg-graph.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt6-lt1-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt3-coot-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lbg-graph.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt79-lt19-protein-geometry-mmdb.o 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c CalphaBuild.cc -fPIC -DPIC -o .libs/CalphaBuild.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 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.libs/libcoot-cabuild.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: link: ranlib .libs/libcoot-cabuild.a libtool: link: rm -fr .libs/libcoot-cabuild.lax libtool: link: ( cd ".libs" && rm -f "libcoot-cabuild.la" && ln -s "../libcoot-cabuild.la" "libcoot-cabuild.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT testcabuild.o -MD -MP -MF .deps/testcabuild.Tpo -c -o testcabuild.o testcabuild.cc mv -f .deps/testcabuild.Tpo 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`/build/buildd/coot-0.7pre1+svn3470/greg-tests' Making all in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' Making all in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT 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.libs/libcoot-analysis.lax/libcoot-coord-utils.a/lt2-coot-utils.o libtool: link: ranlib .libs/libcoot-analysis.a libtool: link: rm -fr .libs/libcoot-analysis.lax libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o bfactan.cc mv -f .deps/bfactan.Tpo .deps/bfactan.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o bfactan bfactan.o ./.libs/libcoot-analysis.a -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis' Making all in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -fPIC -DPIC -o .libs/tw.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o >/dev/null 2>&1 mv -f .deps/tw.Tpo .deps/tw.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-tw.la tw.lo libtool: link: ar cru .libs/libcoot-tw.a .libs/tw.o libtool: link: ranlib .libs/libcoot-tw.a libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tiddly.o -MD -MP -MF .deps/tiddly.Tpo -c -o tiddly.o tiddly.cc mv -f .deps/tiddly.Tpo .deps/tiddly.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o libcoot-tw.la -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o -pthread ./.libs/libcoot-tw.a -L/usr/lib/x86_64-linux-gnu /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/x86_64-linux-gnu/libatk-1.0.so /usr/lib/x86_64-linux-gnu/libgio-2.0.so /usr/lib/x86_64-linux-gnu/libpangoft2-1.0.so /usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/x86_64-linux-gnu/libpango-1.0.so /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig /usr/lib/x86_64-linux-gnu/libgobject-2.0.so /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so /usr/lib/x86_64-linux-gnu/libgthread-2.0.so -lrt /usr/lib/x86_64-linux-gnu/libglib-2.0.so -pthread make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw' Making all in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS 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-DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc -o lbg.o >/dev/null 2>&1 mv -f .deps/lbg.Tpo .deps/lbg.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo wmolecule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -fPIC -DPIC -o .libs/wmolecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -o wmolecule.o >/dev/null 2>&1 mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo lbg-search.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -fPIC -DPIC -o .libs/lbg-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -o lbg-search.o >/dev/null 2>&1 mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c -o residue-circles.lo residue-circles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -fPIC -DPIC -o .libs/residue-circles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -o residue-circles.o >/dev/null 2>&1 mv -f .deps/residue-circles.Tpo .deps/residue-circles.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c -o rdkit-interface.lo rdkit-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -o rdkit-interface.o >/dev/null 2>&1 mv -f .deps/rdkit-interface.Tpo .deps/rdkit-interface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c -o flev-annotations.lo flev-annotations.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -o flev-annotations.o >/dev/null 2>&1 mv -f .deps/flev-annotations.Tpo .deps/flev-annotations.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-lidia.la lbg.lo wmolecule.lo lbg-search.lo residue-circles.lo rdkit-interface.lo flev-annotations.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm -lgoocanvas -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-lidia-core.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../lidia-core/.libs/libcoot-lidia-core.a") libtool: link: (cd .libs/libcoot-lidia.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3470/lbg/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt2-atomic-numbers.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt2-atomic-numbers.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-lidia.lax/lt3-energy-lib.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-lidia.lax/lt3-energy-lib.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-lidia.lax/lt4-coot-utils.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-lidia.lax/lt4-coot-utils.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-lidia.lax/lt5-protein-geometry.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-lidia.lax/lt5-protein-geometry.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt6-protein-geometry-mmdb.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt6-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-lidia.lax/lt7-coot-fasta.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-lidia.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt8-gdk-keysyms.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt8-gdk-keysyms.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-lidia.lax/lt9-lbg-graph.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-lidia.lax/lt9-lbg-graph.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-lidia.lax/lt10-read-sbase.o || cp .libs/libcoot-lidia.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-lidia.lax/lt10-read-sbase.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt11-atomic-numbers.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/lt11-atomic-numbers.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-lidia.lax/lt12-coot-utils.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-lidia.lax/lt12-coot-utils.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/lt13-coot-fasta.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/lt13-coot-fasta.o libtool: link: ln .libs/libcoot-lidia.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt14-gdk-keysyms.o || cp .libs/libcoot-lidia.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/lt14-gdk-keysyms.o libtool: link: ar cru .libs/libcoot-lidia.a .libs/lbg.o .libs/wmolecule.o .libs/lbg-search.o .libs/residue-circles.o .libs/rdkit-interface.o .libs/flev-annotations.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt4-gdk-keysyms.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt3-coot-fasta.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt1-atomic-numbers.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-lidia.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-lidia.lax/lt2-atomic-numbers.o .libs/libcoot-lidia.lax/lt3-energy-lib.o .libs/libcoot-lidia.lax/lt4-coot-utils.o .libs/libcoot-lidia.lax/lt5-protein-geometry.o .libs/libcoot-lidia.lax/lt6-protein-geometry-mmdb.o .libs/libcoot-lidia.lax/lt7-coot-fasta.o .libs/libcoot-lidia.lax/lt8-gdk-keysyms.o .libs/libcoot-lidia.lax/lt9-lbg-graph.o .libs/libcoot-lidia.lax/lt10-read-sbase.o .libs/libcoot-lidia.lax/libcoot-lidia-core.a/lbg-molfile.o .libs/libcoot-lidia.lax/libcoot-lidia-core.a/lig-build.o .libs/libcoot-lidia.lax/lt11-atomic-numbers.o .libs/libcoot-lidia.lax/lt12-coot-utils.o .libs/libcoot-lidia.lax/lt13-coot-fasta.o .libs/libcoot-lidia.lax/lt14-gdk-keysyms.o libtool: link: ranlib .libs/libcoot-lidia.a libtool: link: rm -fr .libs/libcoot-lidia.lax .libs/libcoot-lidia.lax libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o lidia-main.cc mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o ./libcoot-lidia.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm -lgoocanvas -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o -pthread ./.libs/libcoot-lidia.a -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../lidia-core/.libs/libcoot-lidia-core.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lgoocanvas -L/usr/lib/x86_64-linux-gnu /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/x86_64-linux-gnu/libatk-1.0.so /usr/lib/x86_64-linux-gnu/libgio-2.0.so /usr/lib/x86_64-linux-gnu/libpangoft2-1.0.so /usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/x86_64-linux-gnu/libpango-1.0.so /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig /usr/lib/x86_64-linux-gnu/libgobject-2.0.so /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so /usr/lib/x86_64-linux-gnu/libgthread-2.0.so -lrt /usr/lib/x86_64-linux-gnu/libglib-2.0.so -pthread make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg' Making all in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c -o buccaneer-lib.lo buccaneer-lib.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -fPIC -DPIC -o .libs/buccaneer-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -o buccaneer-lib.o >/dev/null 2>&1 mv -f .deps/buccaneer-lib.Tpo .deps/buccaneer-lib.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c -o buccaneer-prot.lo buccaneer-prot.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -o buccaneer-prot.o >/dev/null 2>&1 mv -f .deps/buccaneer-prot.Tpo .deps/buccaneer-prot.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c -o buccaneer-sequence.lo buccaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -o buccaneer-sequence.o >/dev/null 2>&1 mv -f .deps/buccaneer-sequence.Tpo .deps/buccaneer-sequence.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -fPIC -DPIC -o .libs/cootaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -o cootaneer-sequence.o >/dev/null 2>&1 mv -f .deps/cootaneer-sequence.Tpo .deps/cootaneer-sequence.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcootaneer.la buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcootaneer.a .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o libtool: link: ranlib .libs/libcootaneer.a libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-demo.o -MD -MP -MF .deps/cootaneer-demo.Tpo -c -o cootaneer-demo.o cootaneer-demo.cpp mv -f .deps/cootaneer-demo.Tpo .deps/cootaneer-demo.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o ./libcootaneer.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o ./.libs/libcootaneer.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' Making all in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc mv -f .deps/main.Tpo .deps/main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT svn-revision.o -MD -MP -MF .deps/svn-revision.Tpo -c -o svn-revision.o svn-revision.cc mv -f .deps/svn-revision.Tpo .deps/svn-revision.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT c-inner-main.o -MD -MP -MF .deps/c-inner-main.Tpo -c -o c-inner-main.o c-inner-main.c mv -f .deps/c-inner-main.Tpo .deps/c-inner-main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build.o -MD -MP -MF .deps/c-interface-build.Tpo -c -o c-interface-build.o c-interface-build.cc mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build-gui.o -MD -MP -MF .deps/c-interface-build-gui.Tpo -c -o c-interface-build-gui.o c-interface-build-gui.cc mv -f .deps/c-interface-build-gui.Tpo .deps/c-interface-build-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-database.o -MD -MP -MF .deps/c-interface-database.Tpo -c -o c-interface-database.o c-interface-database.cc mv -f .deps/c-interface-database.Tpo .deps/c-interface-database.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-pisa.o -MD -MP -MF .deps/c-interface-pisa.Tpo -c -o c-interface-pisa.o c-interface-pisa.cc mv -f .deps/c-interface-pisa.Tpo .deps/c-interface-pisa.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-pisa-gui.o -MD -MP -MF .deps/c-interface-pisa-gui.Tpo -c -o c-interface-pisa-gui.o c-interface-pisa-gui.cc mv -f .deps/c-interface-pisa-gui.Tpo .deps/c-interface-pisa-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-gui.o -MD -MP -MF .deps/c-interface-gui.Tpo -c -o c-interface-gui.o c-interface-gui.cc mv -f .deps/c-interface-gui.Tpo .deps/c-interface-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-gtk2.o -MD -MP -MF .deps/c-interface-gtk2.Tpo -c -o c-interface-gtk2.o c-interface-gtk2.cc mv -f .deps/c-interface-gtk2.Tpo .deps/c-interface-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-info.o -MD -MP -MF .deps/c-interface-info.Tpo -c -o c-interface-info.o c-interface-info.cc mv -f .deps/c-interface-info.Tpo .deps/c-interface-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-kk.o -MD -MP -MF .deps/c-interface-kk.Tpo -c -o c-interface-kk.o c-interface-kk.cc mv -f .deps/c-interface-kk.Tpo .deps/c-interface-kk.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o c-interface-ligands.cc mv -f .deps/c-interface-ligands.Tpo .deps/c-interface-ligands.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o c-interface-ligands-gui.cc mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o c-interface-mmdb.cc mv -f .deps/c-interface-mmdb.Tpo .deps/c-interface-mmdb.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mutate.o -MD -MP -MF .deps/c-interface-mutate.Tpo -c -o c-interface-mutate.o c-interface-mutate.cc mv -f .deps/c-interface-mutate.Tpo .deps/c-interface-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' 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-I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-network.o -MD -MP -MF .deps/c-interface-network.Tpo -c -o c-interface-network.o c-interface-network.cc mv -f .deps/c-interface-network.Tpo .deps/c-interface-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-nucleotides.o -MD -MP -MF .deps/c-interface-nucleotides.Tpo -c -o c-interface-nucleotides.o c-interface-nucleotides.cc mv -f .deps/c-interface-nucleotides.Tpo .deps/c-interface-nucleotides.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-python.o -MD -MP -MF .deps/c-interface-python.Tpo -c -o c-interface-python.o c-interface-python.cc mv -f .deps/c-interface-python.Tpo .deps/c-interface-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-preferences.o -MD -MP -MF .deps/c-interface-preferences.Tpo -c -o c-interface-preferences.o c-interface-preferences.cc mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-refine.o -MD -MP -MF .deps/c-interface-refine.Tpo -c -o c-interface-refine.o c-interface-refine.cc mv -f .deps/c-interface-refine.Tpo .deps/c-interface-refine.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o c-interface-scm.cc mv -f .deps/c-interface-scm.Tpo .deps/c-interface-scm.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-superpose.o -MD -MP -MF .deps/c-interface-superpose.Tpo -c -o c-interface-superpose.o c-interface-superpose.cc mv -f .deps/c-interface-superpose.Tpo .deps/c-interface-superpose.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-validate.o -MD -MP -MF .deps/c-interface-validate.Tpo -c -o c-interface-validate.o c-interface-validate.cc mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-view.o -MD -MP -MF .deps/c-interface-view.Tpo -c -o c-interface-view.o c-interface-view.cc In file included from /usr/include/python2.7/Python.h:8:0, from cc-interface.hh:34, from c-interface-view.cc:8: /usr/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined /usr/include/features.h:163:0: note: this is the location of the previous definition /usr/include/python2.7/pyconfig.h:1177:0: warning: "_XOPEN_SOURCE" redefined /usr/include/features.h:165:0: note: this is the location of the previous definition mv -f .deps/c-interface-view.Tpo .deps/c-interface-view.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-widgets.o -MD -MP -MF .deps/c-interface-widgets.Tpo -c -o c-interface-widgets.o c-interface-widgets.cc mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters.o -MD -MP -MF .deps/c-interface-waters.Tpo -c -o c-interface-waters.o c-interface-waters.cc mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o c-interface-waters-gui.cc mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o c-interface.cc mv -f .deps/c-interface.Tpo .deps/c-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-test.o -MD -MP -MF .deps/c-interface-test.Tpo -c -o c-interface-test.o c-interface-test.cc mv -f .deps/c-interface-test.Tpo .deps/c-interface-test.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o callbacks.c callbacks.c: In function 'on_ok_button_coordinates_clicked': callbacks.c:206:16: warning: unused variable 'filename' callbacks.c: In function 'on_ok_button_dataset_clicked': callbacks.c:303:7: warning: unused variable 'itmp' callbacks.c: In function 'on_about1_activate': callbacks.c:393:15: warning: unused variable 'text_widget' callbacks.c: In function 'on_show_symmetry_ok_button_clicked': callbacks.c:682:8: warning: unused variable 'imol' callbacks.c: In function 'on_show_symmetry_apply_button_clicked': callbacks.c:771:8: warning: unused variable 'imol' callbacks.c: In function 'on_anisotropic_atoms1_activate': callbacks.c:886:8: warning: unused variable 'imol' callbacks.c: In function 'on_show_aniso_ok_button_clicked': callbacks.c:949:8: warning: unused variable 'imol' callbacks.c: In function 'on_find_ligand_many_atoms_continue_button_clicked': callbacks.c:2082:4: warning: implicit declaration of function 'execute_ligand_search_py' callbacks.c: In function 'on_pointer_atom_type_ok_button_clicked': callbacks.c:3790:9: warning: unused variable 'type' callbacks.c: In function 'on_run_refmac_phase_input_optionmenu_changed': callbacks.c:3959:14: warning: unused variable 'sad_checkbutton' callbacks.c: In function 'on_run_refmac_twin_checkbutton_toggled': callbacks.c:4040:14: warning: unused variable 'mtz_file_frame' callbacks.c: In function 'on_run_refmac_mtz_filechooser_button_clicked': callbacks.c:4195:16: warning: unused variable 'mtz_filename' callbacks.c:4194:14: warning: unused variable 'mtz_file_label' callbacks.c: In function 'on_centre_atom_label_ok_button_clicked': callbacks.c:5395:14: warning: unused variable 'off' callbacks.c: In function 'on_column_label_expert_mode_button_clicked': callbacks.c:5634:13: warning: unused variable 'is_expert_mode_flag' callbacks.c: In function 'on_preferences_destroy': callbacks.c:6472:14: warning: unused variable 'w' callbacks.c: In function 'on_preferences_model_toolbar_show_radiobutton_toggled': callbacks.c:7639:14: warning: unused variable 'w' callbacks.c: In function 'on_preferences_model_toolbar_right_radiobutton_toggled': callbacks.c:7653:14: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_left_radiobutton_toggled': callbacks.c:7667:14: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_top_radiobutton_toggled': callbacks.c:7681:14: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_bottom_radiobutton_toggled': callbacks.c:7695:14: warning: unused variable 'show' callbacks.c: In function 'on_pointer_distances_checkbutton_toggled': callbacks.c:7943:15: warning: unused variable 'dialog' callbacks.c: In function 'on_delete_item_dialog_destroy': callbacks.c:8128:15: warning: unused variable 'w' callbacks.c: In function 'on_ncs_controller_molecule_n_display_chain_ich_checkbutton_toggled': callbacks.c:8893:15: warning: unused variable 'w' callbacks.c: In function 'on_dataset_filechooserdialog1_response': callbacks.c:10495:7: warning: unused variable 'itmp' callbacks.c: In function 'on_refine_params_weight_matrix_entry_changed': callbacks.c:11813:16: warning: unused variable 'text' mv -f .deps/callbacks.Tpo .deps/callbacks.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT cmtz-interface.o -MD -MP -MF .deps/cmtz-interface.Tpo -c -o cmtz-interface.o cmtz-interface.cc mv -f .deps/cmtz-interface.Tpo .deps/cmtz-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT command-line.o -MD -MP -MF .deps/command-line.Tpo -c -o command-line.o command-line.cc mv -f .deps/command-line.Tpo .deps/command-line.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT cmdline.o -MD -MP -MF .deps/cmdline.Tpo -c -o cmdline.o cmdline.c mv -f .deps/cmdline.Tpo .deps/cmdline.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o coot-align.cc mv -f .deps/coot-align.Tpo .deps/coot-align.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-nomenclature.o -MD -MP -MF .deps/coot-nomenclature.Tpo -c -o coot-nomenclature.o coot-nomenclature.cc mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords 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-I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue.o -MD -MP -MF .deps/coot-glue.Tpo -c -o coot-glue.o coot-glue.c mv -f .deps/coot-glue.Tpo .deps/coot-glue.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o coot-glue-gtk2.c mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o coot-glue-gtk2-python.cc mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o coot-hydrogens.cc mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o coot_pythonmodule.cc mv -f .deps/coot_pythonmodule.Tpo .deps/coot_pythonmodule.Po swig -o coot_wrap_guile_pre_gtk1.cc -DHAVE_SYS_STDTYPES_H=0 -I../src -guile -c++ ../src/coot.i /bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk1 coot_wrap_guile_pre_gtk1.cc coot_wrap_guile_gtk1.cc guile_config: guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found gtk2: gtk1 g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_guile_gtk1.o -MD -MP -MF .deps/coot_wrap_guile_gtk1.Tpo -c -o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk1.cc mv -f .deps/coot_wrap_guile_gtk1.Tpo .deps/coot_wrap_guile_gtk1.Po swig -o coot_wrap_guile_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE -DHAVE_SYS_STDTYPES_H=0 -I../src -guile -c++ ../src/coot.i /bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk2 coot_wrap_guile_pre_gtk2.cc coot_wrap_guile_gtk2.cc guile_config: guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found gtk2: gtk2 g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH 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-I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-refmac.o -MD -MP -MF .deps/graphics-info-refmac.Tpo -c -o graphics-info-refmac.o graphics-info-refmac.cc mv -f .deps/graphics-info-refmac.Tpo .deps/graphics-info-refmac.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ 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-I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-gui.o -MD -MP -MF .deps/graphics-info-gui.Tpo -c -o graphics-info-gui.o graphics-info-gui.cc mv -f .deps/graphics-info-gui.Tpo .deps/graphics-info-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-modelling.o -MD -MP -MF .deps/graphics-info-modelling.Tpo -c -o graphics-info-modelling.o graphics-info-modelling.cc mv -f .deps/graphics-info-modelling.Tpo .deps/graphics-info-modelling.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation.o -MD -MP -MF .deps/graphics-info-navigation.Tpo -c -o graphics-info-navigation.o graphics-info-navigation.cc mv -f .deps/graphics-info-navigation.Tpo .deps/graphics-info-navigation.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation-gtk1.o -MD -MP -MF .deps/graphics-info-navigation-gtk1.Tpo -c -o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk1.cc mv -f .deps/graphics-info-navigation-gtk1.Tpo .deps/graphics-info-navigation-gtk1.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation-gtk2.o -MD -MP -MF .deps/graphics-info-navigation-gtk2.Tpo -c -o graphics-info-navigation-gtk2.o graphics-info-navigation-gtk2.cc mv -f .deps/graphics-info-navigation-gtk2.Tpo .deps/graphics-info-navigation-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-preferences.o -MD -MP -MF .deps/graphics-info-preferences.Tpo -c -o graphics-info-preferences.o graphics-info-preferences.cc mv -f .deps/graphics-info-preferences.Tpo .deps/graphics-info-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-network.o -MD -MP -MF .deps/graphics-info-network.Tpo -c -o graphics-info-network.o graphics-info-network.cc mv -f .deps/graphics-info-network.Tpo .deps/graphics-info-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-mutate.o -MD -MP -MF .deps/graphics-info-mutate.Tpo -c -o graphics-info-mutate.o graphics-info-mutate.cc mv -f .deps/graphics-info-mutate.Tpo .deps/graphics-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-lsq.o -MD -MP -MF .deps/graphics-info-lsq.Tpo -c -o graphics-info-lsq.o graphics-info-lsq.cc mv -f .deps/graphics-info-lsq.Tpo .deps/graphics-info-lsq.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-pick.o -MD -MP -MF .deps/graphics-info-pick.Tpo -c -o graphics-info-pick.o graphics-info-pick.cc mv -f .deps/graphics-info-pick.Tpo .deps/graphics-info-pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-render.o -MD -MP -MF .deps/graphics-info-render.Tpo -c -o graphics-info-render.o graphics-info-render.cc mv -f .deps/graphics-info-render.Tpo .deps/graphics-info-render.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-state.o -MD -MP -MF .deps/graphics-info-state.Tpo -c -o graphics-info-state.o graphics-info-state.cc mv -f .deps/graphics-info-state.Tpo .deps/graphics-info-state.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-superpose.o -MD -MP -MF .deps/graphics-info-superpose.Tpo -c -o graphics-info-superpose.o graphics-info-superpose.cc mv -f .deps/graphics-info-superpose.Tpo .deps/graphics-info-superpose.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gl-matrix.o -MD -MP -MF .deps/gl-matrix.Tpo -c -o gl-matrix.o gl-matrix.cc mv -f .deps/gl-matrix.Tpo .deps/gl-matrix.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gtk-manual.o -MD -MP -MF .deps/gtk-manual.Tpo -c -o gtk-manual.o gtk-manual.cc mv -f .deps/gtk-manual.Tpo .deps/gtk-manual.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gtk-widget-conversion-utils.o -MD -MP -MF .deps/gtk-widget-conversion-utils.Tpo -c -o gtk-widget-conversion-utils.o gtk-widget-conversion-utils.cc mv -f .deps/gtk-widget-conversion-utils.Tpo .deps/gtk-widget-conversion-utils.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT gtk2-interface.o -MD -MP -MF .deps/gtk2-interface.Tpo -c -o gtk2-interface.o gtk2-interface.c mv -f .deps/gtk2-interface.Tpo .deps/gtk2-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c mv -f .deps/interface.Tpo .deps/interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT lbg-interface.o -MD -MP -MF .deps/lbg-interface.Tpo -c -o lbg-interface.o lbg-interface.cc mv -f .deps/lbg-interface.Tpo .deps/lbg-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info.o -MD -MP -MF .deps/molecule-class-info.Tpo -c -o molecule-class-info.o molecule-class-info.cc mv -f .deps/molecule-class-info.Tpo .deps/molecule-class-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-maps.o -MD -MP -MF .deps/molecule-class-info-maps.Tpo -c -o molecule-class-info-maps.o molecule-class-info-maps.cc mv -f .deps/molecule-class-info-maps.Tpo .deps/molecule-class-info-maps.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-other.o -MD -MP -MF .deps/molecule-class-info-other.Tpo -c -o molecule-class-info-other.o molecule-class-info-other.cc mv -f .deps/molecule-class-info-other.Tpo .deps/molecule-class-info-other.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-build.o -MD -MP -MF .deps/molecule-class-info-build.Tpo -c -o molecule-class-info-build.o molecule-class-info-build.cc mv -f .deps/molecule-class-info-build.Tpo .deps/molecule-class-info-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-mutate.o -MD -MP -MF .deps/molecule-class-info-mutate.Tpo -c -o molecule-class-info-mutate.o molecule-class-info-mutate.cc mv -f .deps/molecule-class-info-mutate.Tpo .deps/molecule-class-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-residues.o -MD -MP -MF .deps/molecule-class-info-residues.Tpo -c -o molecule-class-info-residues.o molecule-class-info-residues.cc mv -f .deps/molecule-class-info-residues.Tpo .deps/molecule-class-info-residues.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-refine.o -MD -MP -MF .deps/molecule-class-info-refine.Tpo -c -o molecule-class-info-refine.o molecule-class-info-refine.cc mv -f .deps/molecule-class-info-refine.Tpo .deps/molecule-class-info-refine.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-kk.o -MD -MP -MF .deps/molecule-class-info-kk.Tpo -c -o molecule-class-info-kk.o molecule-class-info-kk.cc mv -f .deps/molecule-class-info-kk.Tpo .deps/molecule-class-info-kk.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-surface.o -MD -MP -MF .deps/molecule-class-info-surface.Tpo -c -o molecule-class-info-surface.o molecule-class-info-surface.cc mv -f .deps/molecule-class-info-surface.Tpo .deps/molecule-class-info-surface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-ncs.o -MD -MP -MF .deps/molecule-class-info-ncs.Tpo -c -o molecule-class-info-ncs.o molecule-class-info-ncs.cc mv -f .deps/molecule-class-info-ncs.Tpo .deps/molecule-class-info-ncs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-widget-work.o -MD -MP -MF .deps/molecule-class-info-widget-work.Tpo -c -o molecule-class-info-widget-work.o molecule-class-info-widget-work.cc mv -f .deps/molecule-class-info-widget-work.Tpo .deps/molecule-class-info-widget-work.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT nsv.o -MD -MP -MF .deps/nsv.Tpo -c -o nsv.o nsv.cc mv -f .deps/nsv.Tpo .deps/nsv.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT pick.o -MD -MP -MF .deps/pick.Tpo -c -o pick.o pick.cc mv -f .deps/pick.Tpo .deps/pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT protein_db-interface.o -MD -MP -MF .deps/protein_db-interface.Tpo -c -o protein_db-interface.o protein_db-interface.cc mv -f .deps/protein_db-interface.Tpo .deps/protein_db-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT read-phs.o -MD -MP -MF .deps/read-phs.Tpo -c -o read-phs.o read-phs.c read-phs.c: In function 'try_read_phs_file': read-phs.c:47:8: warning: unused variable 'is_pha_extension' mv -f .deps/read-phs.Tpo .deps/read-phs.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH 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-I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.c mv -f .deps/support.Tpo .deps/support.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support-gtk2-extras.o -MD -MP -MF .deps/support-gtk2-extras.Tpo -c -o support-gtk2-extras.o support-gtk2-extras.c mv -f .deps/support-gtk2-extras.Tpo .deps/support-gtk2-extras.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT testing.o -MD -MP -MF .deps/testing.Tpo -c -o testing.o testing.cc mv -f .deps/testing.Tpo .deps/testing.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c mv -f .deps/trackball.Tpo .deps/trackball.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT sequence-view.o -MD -MP -MF .deps/sequence-view.Tpo -c -o sequence-view.o sequence-view.cc mv -f .deps/sequence-view.Tpo .deps/sequence-view.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT seq-view-interface.o -MD -MP -MF .deps/seq-view-interface.Tpo -c -o seq-view-interface.o seq-view-interface.c mv -f .deps/seq-view-interface.Tpo .deps/seq-view-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT user-mods.o -MD -MP -MF .deps/user-mods.Tpo -c -o user-mods.o user-mods.cc mv -f .deps/user-mods.Tpo .deps/user-mods.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT xmap-utils.o -MD -MP -MF .deps/xmap-utils.Tpo -c -o xmap-utils.o xmap-utils.cc mv -f .deps/xmap-utils.Tpo .deps/xmap-utils.Po swig -o coot_wrap_python_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -I../src -shadow -python -c++ ../src/coot.i && mv coot.py coot_gtk2.py /bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre_gtk2.cc coot_wrap_python_gtk2.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_python_gtk2.o -MD -MP -MF .deps/coot_wrap_python_gtk2.Tpo -c -o coot_wrap_python_gtk2.o coot_wrap_python_gtk2.cc mv -f .deps/coot_wrap_python_gtk2.Tpo .deps/coot_wrap_python_gtk2.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lssm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib/python2.7/config -lpython2.7 -lutil -Wl,--export-dynamic -pthread -L/usr/lib/x86_64-linux-gnu -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -lglut -lXmu -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -pthread -L/usr/lib/x86_64-linux-gnu -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -L/usr/lib -lgsl -lgslcblas -lm -lgoocanvas -pthread -L/usr/lib/x86_64-linux-gnu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lm -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -Wl,--export-dynamic -pthread -pthread -pthread -pthread ../lbg/.libs/libcoot-lidia.a -L/usr/lib -L/usr ../ligand/.libs/libcoot-ligand.a ../lidia-core/.libs/libcoot-lidia-core.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-surface/.libs/libcoot-surface.a ../surface/.libs/libccp4mg-surface.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a ../protein_db/.libs/libcoot-protein-db.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lssm -lmmdb -L/usr/lib/python2.7/config -lpython2.7 -lutil -L/usr/lib/x86_64-linux-gnu /usr/lib/libgtkglext-x11-1.0.so /usr/lib/libgdkglext-x11-1.0.so -lGLU -lGL -lXt -lSM -lICE /usr/lib/x86_64-linux-gnu/libpangox-1.0.so -lX11 -lglut -lXmu /usr/lib/libgnomecanvas-2.so /usr/lib/libart_lgpl_2.so -lgsl -lgslcblas -lgoocanvas /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/x86_64-linux-gnu/libatk-1.0.so /usr/lib/x86_64-linux-gnu/libgio-2.0.so /usr/lib/x86_64-linux-gnu/libpangoft2-1.0.so /usr/lib/x86_64-linux-gnu/libpangocairo-1.0.so -lgdk_pixbuf-2.0 -lm /usr/lib/libcairo.so /usr/lib/x86_64-linux-gnu/libpango-1.0.so /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig /usr/lib/x86_64-linux-gnu/libgobject-2.0.so /usr/lib/x86_64-linux-gnu/libgmodule-2.0.so /usr/lib/x86_64-linux-gnu/libgthread-2.0.so -lrt /usr/lib/x86_64-linux-gnu/libglib-2.0.so -pthread g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT density-score-by-residue-src.o -MD -MP -MF .deps/density-score-by-residue-src.Tpo -c -o density-score-by-residue-src.o density-score-by-residue-src.cc mv -f .deps/density-score-by-residue-src.Tpo .deps/density-score-by-residue-src.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT fix-nomenclature.o -MD -MP -MF .deps/fix-nomenclature.Tpo -c -o fix-nomenclature.o fix-nomenclature.cc mv -f .deps/fix-nomenclature.Tpo .deps/fix-nomenclature.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/libcoot-ligand.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -lgsl -lgslcblas -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/.libs/libcoot-ligand.a -L/usr/lib -L/usr ../db-main/.libs/libcoot-db-main.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a -lgsl -lgslcblas -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT align.o -MD -MP -MF .deps/align.Tpo -c -o align.o align.cc mv -f .deps/align.Tpo .deps/align.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/libpng12 -I/usr/include/libgnomecanvas-2.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DCOOT_USE_GTK2_INTERFACE -pthread -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/pygtk-2.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pixman-1 -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT test-chol.o -MD -MP -MF .deps/test-chol.Tpo -c -o test-chol.o test-chol.cc mv -f .deps/test-chol.Tpo .deps/test-chol.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-natty-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-natty-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o ../coords/.libs/libcoot-coords.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm cp coot_gtk2.py coot.py make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src' Making all in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data' Making all in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' Making all in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc' Updating ./versuser.texi restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (makeinfo --no-split --version) >/dev/null 2>&1; then \ for f in coot-user-manual.info coot-user-manual.info-[0-9] coot-user-manual.info-[0-9][0-9] coot-user-manual.i[0-9] coot-user-manual.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if makeinfo --no-split -I . \ -o coot-user-manual.info coot-user-manual.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./coot-user-manual.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' sed -e 's/#GTK2 //' ./cootrc.template > cootrc make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' # make ubuntu splash screen sh debian/make-ubuntu-splash.sh # make a nice background image for coots-nest convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png touch build-arch-stamp # Curretly nothing to do to build arch-indep packages, # except make sure config.status is up-to-date touch build-indep-stamp /usr/bin/fakeroot debian/rules binary-arch dh_testdir ./configure --prefix=/usr \ --with-gtk2 \ --with-mmdb-prefix=/usr \ --with-ssmlib-prefix=/usr \ --with-fftw-library-prefix=s \ --with-gpp4 \ --with-python \ --with-pygtk=/usr checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for gcc option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for CCP4... yes checking for MMDB... yes checking for SSMLib... /usr checking for Clipper... yes Not using guile checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for guile-gtk... checking libglade... no checking for Goocanvas... yes Not using database checking for curl >= 7.9.7... FAILED configure: WARNING: curl-config was not found checking build type... Linux-x86_64-ubuntu-natty-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating rama-data/Makefile config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_testdir /usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT" make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' Making all in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making all in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' Making all in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' Making all in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' Making all in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making all in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme' Making all in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python' Making all in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros' Making all in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat' Making all in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils' Making all in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' Making all in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry' Making all in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' Making all in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' Making all in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface' Making all in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' Making all in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' Making all in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords' Making all in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles' Making all in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' Making all in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' Making all in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' Making all in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main' Making all in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal' Making all in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand' Making all in high-res make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res' Making all in build make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build' Making all in greg-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' Making all in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' Making all in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis' Making all in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw' Making all in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg' Making all in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' Making all in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src' Making all in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data' Making all in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' Making all in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' # make ubuntu splash screen sh debian/make-ubuntu-splash.sh # make a nice background image for coots-nest convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png touch build-arch-stamp dh_testdir dh_testroot dh_prep rm -f debian/coot.substvars rm -f debian/coot.*.debhelper rm -rf debian/coot/ rm -f debian/coot-data.substvars rm -f debian/coot-data.*.debhelper rm -rf debian/coot-data/ rm -f debian/coot-docs.substvars rm -f debian/coot-docs.*.debhelper rm -rf debian/coot-docs/ # Install the compiled library in debian/tmp tree /usr/bin/make DESTDIR=/build/buildd/coot-0.7pre1+svn3470/debian/tmp install make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' Making install in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making install in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/catcheck' Making install in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/rama' Making install in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/sec-str' Making install in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/strand-analysis' Making install in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/auxil' Making install in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/scheme' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/scheme" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme" /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm prodrg-import.scm '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/scheme' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/scheme' Making install in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python" /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_toolbuttons.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python' Making install in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/macros' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/macros' Making install in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/compat' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-getopt.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/compat' Making install in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/utils' Making install in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' test -z "/usr/share/coot/protein_db" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db" /usr/bin/install -c -m 644 protein.db '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/protein_db' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/protein_db' Making install in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/geometry' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/geometry' Making install in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/mini-mol' Making install in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-utils' Making install in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/surface' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/surface' Making install in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coot-surface' Making install in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lidia-core' Making install in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/coords' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/coords' Making install in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/angles' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/angles' Making install in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/skeleton' Making install in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ccp4mg-utils' Making install in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/density-contour' Making install in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/db-main' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/db-main' Making install in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ideal' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ideal' Making install in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/ligand' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c findligand-real findwaters-real '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c findligand-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/findligand-real libtool: install: /usr/bin/install -c findwaters-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/findwaters-real test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /usr/bin/install -c findwaters findligand '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/ligand' Making install in high-res make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/high-res' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/high-res' Making install in build make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/build' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 CalphaBuild.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/build' Making install in greg-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/greg-tests' Making install in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/python-tests' Making install in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/analysis' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c bfactan '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c bfactan /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/bfactan test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 bfkurt.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/analysis' Making install in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/tw' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-tw.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/tw' Making install in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/lbg' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c lidia '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c lidia /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/lidia test -z "/usr/share/coot/pixmaps" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps" /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg Trash-hydrogens-Andy_Trash_Can.svg '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps' test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include" /usr/bin/install -c -m 644 lbg.hh wmolecule.hh rdkit-interface.hh flev-annotations.hh '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/include' test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 lbg.glade '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/lbg' Making install in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/cootaneer' Making install in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-real density-score-by-residue-real fix-nomenclature-errors '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c coot-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/coot-real libtool: install: /usr/bin/install -c density-score-by-residue-real /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/density-score-by-residue-real libtool: install: /usr/bin/install -c fix-nomenclature-errors /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin/fix-nomenclature-errors test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin" /usr/bin/install -c coot density-score-by-residue '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/bin' test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python" /usr/bin/install -c coot.py '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/python' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/src' Making install in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data" /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/data' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/data' Making install in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/rama-data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data" /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/rama-data' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/rama-data' Making install in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/info" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info" /usr/bin/install -c -m 644 ./coot-user-manual.info '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info' install-info --info-dir='/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info' '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/info/coot-user-manual.info' install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' make[3]: Nothing to be done for `install-exec-am'. if test -d ./pixmaps; then \ /bin/bash ./mkinstalldirs /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \ for pixmap in ./pixmaps/*; do \ if test -f $pixmap; then \ /usr/bin/install -c -m 644 $pixmap /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot/pixmaps; \ fi \ done \ fi if test -z "" ; then \ /usr/bin/install -c -m 644 ./syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \ else \ /usr/bin/install -c -m 644 ./windows/syminfo.lib /build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot; \ fi test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk theor-helix-70.pdb '/build/buildd/coot-0.7pre1+svn3470/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' # Override the distributed wrappers with our own for p in coot density-score-by-residue findligand findwaters; do \ m4 -I debian --define=XXX=$p debian/script.m4 > debian/tmp/usr/bin/$p ; \ done # decode image and convert to smaller sizes uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done dh_install -a install -d debian/coot//usr cp -a ./debian/tmp/usr/bin debian/coot//usr/ install -d debian/coot//usr/share cp -a ./debian/tmp/usr/share/icons debian/coot//usr/share/ install -d debian/coot//usr/share/applications cp -a ./debian/coot.desktop debian/coot//usr/share/applications/ cp -a ./debian/coots-nest debian/coot//usr/bin/ dh_testdir dh_testroot dh_installmenu install -d debian/coot/usr/share/menu install -p -m644 debian/coot.menu debian/coot/usr/share/menu/coot echo "# Automatically added by dh_installmenu">> debian/coot.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-menu >> debian/coot.postinst.debhelper echo '# End automatically added section' >> debian/coot.postinst.debhelper echo "# Automatically added by dh_installmenu">> debian/coot.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-menu >> debian/coot.postrm.debhelper echo '# End automatically added section' >> debian/coot.postrm.debhelper dh_installman install -d debian/coot/usr/share/man/man1/ install -p -m644 debian/bfactan.1 debian/coot/usr/share/man/man1/bfactan.1 install -p -m644 debian/coot.1 debian/coot/usr/share/man/man1/coot.1 install -p -m644 debian/density-score-by-residue.1 debian/coot/usr/share/man/man1/density-score-by-residue.1 install -p -m644 debian/findligand.1 debian/coot/usr/share/man/man1/findligand.1 install -p -m644 debian/findwaters.1 debian/coot/usr/share/man/man1/findwaters.1 install -p -m644 debian/fix-nomenclature-errors.1 debian/coot/usr/share/man/man1/fix-nomenclature-errors.1 install -p -m644 debian/lidia.1 debian/coot/usr/share/man/man1/lidia.1 install -p -m644 debian/coots-nest.1 debian/coot/usr/share/man/man1/coots-nest.1 man --recode UTF-8 ./findligand\.1 > findligand\.1\.new chmod 644 findligand.1.new mv -f findligand.1.new findligand.1 man --recode UTF-8 ./fix\-nomenclature\-errors\.1 > fix\-nomenclature\-errors\.1\.new chmod 644 fix-nomenclature-errors.1.new mv -f fix-nomenclature-errors.1.new fix-nomenclature-errors.1 man --recode UTF-8 ./bfactan\.1 > bfactan\.1\.new chmod 644 bfactan.1.new mv -f bfactan.1.new bfactan.1 man --recode UTF-8 ./coot\.1 > coot\.1\.new chmod 644 coot.1.new mv -f coot.1.new coot.1 man --recode UTF-8 ./coots\-nest\.1 > coots\-nest\.1\.new chmod 644 coots-nest.1.new mv -f coots-nest.1.new coots-nest.1 man --recode UTF-8 ./findwaters\.1 > findwaters\.1\.new chmod 644 findwaters.1.new mv -f findwaters.1.new findwaters.1 man --recode UTF-8 ./density\-score\-by\-residue\.1 > density\-score\-by\-residue\.1\.new chmod 644 density-score-by-residue.1.new mv -f density-score-by-residue.1.new density-score-by-residue.1 man --recode UTF-8 ./lidia\.1 > lidia\.1\.new chmod 644 lidia.1.new mv -f lidia.1.new lidia.1 dh_installinfo install -d debian/coot/usr/share/info cp debian/tmp/usr/share/info/coot-user-manual.info debian/coot/usr/share/info chmod -R go=rX debian/coot/usr/share/info/ chmod -R u\+rw debian/coot/usr/share/info/ (grep -s -v misc:Depends debian/coot.substvars; echo "misc:Depends=dpkg (>= 1.15.4) | install-info") > debian/coot.substvars.new mv debian/coot.substvars.new debian/coot.substvars dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/lidia strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/bfactan strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/density-score-by-residue-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/fix-nomenclature-errors strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/coot-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findligand-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findwaters-real Can't stat debian/coot-data: No such file or directory at /usr/bin/dh_strip.pkg-create-dbgsym line 207 Can't stat debian/coot-docs: No such file or directory at /usr/bin/dh_strip.pkg-create-dbgsym line 207 dh_makeshlibs rm -f debian/coot/DEBIAN/shlibs rm -f debian/coot-data/DEBIAN/shlibs find: `debian/coot-data': No such file or directory rm -f debian/coot-docs/DEBIAN/shlibs find: `debian/coot-docs': No such file or directory dh_shlibdeps install -o 0 -g 0 -d debian/coot/DEBIAN dpkg-shlibdeps -Tdebian/coot.substvars debian/coot/usr/bin/lidia debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/coot-real debian/coot/usr/bin/findligand-real debian/coot/usr/bin/findwaters-real dpkg-shlibdeps: warning: dependency on libXt.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libsfftw.so.2 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgslcblas.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfontconfig.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libatk-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangocairo-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfreetype.so.6 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgpp4.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libICE.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangox-1.0.so.0 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libXmu.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libutil.so.1 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgio-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgmodule-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpango-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libSM.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgthread-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libart_lgpl_2.so.2 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangoft2-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). install -o 0 -g 0 -d debian/coot-data/DEBIAN install -o 0 -g 0 -d debian/coot-docs/DEBIAN # Now call make recursively to execute the common bits /usr/bin/make -f debian/rules DH_OPTIONS=-a binary-common make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3470' dh_testdir dh_testroot dh_installchangelogs ChangeLog install -d debian/coot/usr/share/doc/coot install -o 0 -g 0 -p -m644 debian/changelog debian/coot/usr/share/doc/coot/changelog.Debian install -o 0 -g 0 -p -m644 ChangeLog debian/coot/usr/share/doc/coot/changelog dh_installdocs RELEASE-NOTES debian/citation.bib cp -a RELEASE-NOTES debian/coot/usr/share/doc/coot cp -a debian/citation.bib debian/coot/usr/share/doc/coot chown -R 0:0 debian/coot/usr/share/doc chmod -R go=rX debian/coot/usr/share/doc chmod -R u\+rw debian/coot/usr/share/doc install -g 0 -o 0 -m 644 -p debian/copyright debian/coot/usr/share/doc/coot/copyright dh_installdirs dh_compress cd debian/coot chmod a-x usr/share/info/coot-user-manual.info usr/share/man/man1/findligand.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/man/man1/bfactan.1 usr/share/man/man1/coot.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/density-score-by-residue.1 usr/share/man/man1/lidia.1 usr/share/doc/coot/changelog usr/share/doc/coot/changelog.Debian usr/share/doc/coot/RELEASE-NOTES gzip -9nf usr/share/info/coot-user-manual.info usr/share/man/man1/findligand.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/man/man1/bfactan.1 usr/share/man/man1/coot.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/density-score-by-residue.1 usr/share/man/man1/lidia.1 usr/share/doc/coot/changelog usr/share/doc/coot/changelog.Debian usr/share/doc/coot/RELEASE-NOTES cd '/build/buildd/coot-0.7pre1+svn3470' dh_fixperms find debian/coot -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/coot ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/coot/usr/share/doc -type f ! -regex 'debian/coot/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/coot/usr/share/man debian/coot/usr/man/ debian/coot/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/lib/perl5 debian/coot/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/coot/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x dh_installdeb printf '#!/bin/sh set -e ' > debian/coot/DEBIAN/postinst cat debian/coot.postinst.debhelper >> debian/coot/DEBIAN/postinst chown 0:0 debian/coot/DEBIAN/postinst chmod 755 debian/coot/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/coot/DEBIAN/postrm cat debian/coot.postrm.debhelper >> debian/coot/DEBIAN/postrm chown 0:0 debian/coot/DEBIAN/postrm chmod 755 debian/coot/DEBIAN/postrm dh_gencontrol dpkg-gencontrol -pcoot -ldebian/changelog -Tdebian/coot.substvars -Pdebian/coot chmod 644 debian/coot/DEBIAN/control chown 0:0 debian/coot/DEBIAN/control dh_md5sums (cd debian/coot >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/coot/DEBIAN/md5sums chown 0:0 debian/coot/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/coot .. INFO: pkgstriptranslations version 95 grep: /etc/apt/sources.list: Permission denied INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build grep: /etc/apt/sources.list: Permission denied INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `coot' in `../coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb'. make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3470' dpkg-genchanges -B -mUbuntu/lpia Build Daemon >../coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build coot-0.7pre1+svn3470 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110414-1553 chroot-autobuild/build/buildd/coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb: new debian package, version 2.0. size 6645048 bytes: control archive= 2191 bytes. 1548 bytes, 18 lines control 2168 bytes, 33 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: coot Version: 0.7pre1+svn3470-0ubuntu1~natty1 Architecture: amd64 Maintainer: Morten Kjeldgaard Installed-Size: 15572 Depends: freeglut3, libart-2.0-2 (>= 2.3.18), libatk1.0-0 (>= 1.12.4), libc6 (>= 2.4), libcairo2 (>= 1.2.4), libclipper2, libfontconfig1 (>= 2.8.0), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgdk-pixbuf2.0-0 (>= 2.22.0), libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libgnomecanvas2-0 (>= 2.11.1), libgomp1 (>= 4.2.1), libgoocanvas3 (>= 0.15), libgpp4-0 (>= 1.0.4), libgsl0ldbl (>= 1.9), libgtk2.0-0 (>= 2.16.0), libgtkglext1, libice6 (>= 1:1.0.0), libmmdb0 (>= 1.23.2.1), libpango1.0-0 (>= 1.14.0), libpng12-0 (>= 1.2.13-4), libpython2.7 (>= 2.7), libsm6, libssm0 (>= 0.1), libstdc++6 (>= 4.5), libx11-6, libxmu6, libxt6, sfftw2, zlib1g (>= 1:1.1.4), dpkg (>= 1.15.4) | install-info, coot-data, refmac-dict, python-vte, python Suggests: coot-docs Section: science Priority: optional Homepage: http://www.biop.ox.ac.uk/coot/ Description: model building program for macromolecular crystallography Coot is a program for constructing atomic models of macromolecules from x-ray diffraction data. Coot displays electron density maps and molecular models and allows model manipulations such as idealization, refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers. Validation tools such as Ramachandran and geometry plots are available to the user. This package provides a Coot build with embedded Python support. chroot-autobuild/build/buildd/coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb: drwxr-xr-x root/root 0 2011-04-14 15:52 ./ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/menu/ -rw-r--r-- root/root 115 2011-04-14 15:22 ./usr/share/menu/coot drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/man/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/man/man1/ -rw-r--r-- root/root 367 2011-04-14 15:52 ./usr/share/man/man1/bfactan.1.gz -rw-r--r-- root/root 3058 2011-04-14 15:52 ./usr/share/man/man1/coot.1.gz -rw-r--r-- root/root 354 2011-04-14 15:52 ./usr/share/man/man1/lidia.1.gz -rw-r--r-- root/root 867 2011-04-14 15:52 ./usr/share/man/man1/findwaters.1.gz -rw-r--r-- root/root 655 2011-04-14 15:52 ./usr/share/man/man1/density-score-by-residue.1.gz -rw-r--r-- root/root 386 2011-04-14 15:52 ./usr/share/man/man1/fix-nomenclature-errors.1.gz -rw-r--r-- root/root 487 2011-04-14 15:52 ./usr/share/man/man1/coots-nest.1.gz -rw-r--r-- root/root 1007 2011-04-14 15:52 ./usr/share/man/man1/findligand.1.gz drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/64x64/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/64x64/apps/ -rwxr-xr-x root/root 8476 2011-04-14 15:52 ./usr/share/icons/hicolor/64x64/apps/coot.png drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/24x24/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/24x24/apps/ -rwxr-xr-x root/root 2781 2011-04-14 15:52 ./usr/share/icons/hicolor/24x24/apps/coot.png drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/22x22/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/22x22/apps/ -rwxr-xr-x root/root 2565 2011-04-14 15:52 ./usr/share/icons/hicolor/22x22/apps/coot.png drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/32x32/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/32x32/apps/ -rwxr-xr-x root/root 3647 2011-04-14 15:52 ./usr/share/icons/hicolor/32x32/apps/coot.png drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/icons/hicolor/48x48/apps/ -rwxr-xr-x root/root 5621 2011-04-14 15:52 ./usr/share/icons/hicolor/48x48/apps/coot.png drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/doc/coot/ -rw-r--r-- root/root 21920 2011-04-12 10:15 ./usr/share/doc/coot/RELEASE-NOTES.gz -rw-r--r-- root/root 56743 2011-04-12 10:15 ./usr/share/doc/coot/changelog.gz -rw-r--r-- root/root 44439 2011-04-14 15:22 ./usr/share/doc/coot/copyright -rw-r--r-- root/root 919 2011-04-14 15:22 ./usr/share/doc/coot/citation.bib -rw-r--r-- root/root 1203 2011-04-14 15:22 ./usr/share/doc/coot/changelog.Debian.gz drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/applications/ -rw-r--r-- root/root 145 2011-04-14 15:22 ./usr/share/applications/coot.desktop drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/share/info/ -rw-r--r-- root/root 62002 2011-04-14 15:52 ./usr/share/info/coot-user-manual.info.gz drwxr-xr-x root/root 0 2011-04-14 15:52 ./usr/bin/ -rwxr-xr-x root/root 643184 2011-04-14 15:52 ./usr/bin/lidia -rwxr-xr-x root/root 302800 2011-04-14 15:52 ./usr/bin/bfactan -rwxr-xr-x root/root 1266 2011-04-14 15:52 ./usr/bin/findligand -rwxr-xr-x root/root 803464 2011-04-14 15:52 ./usr/bin/density-score-by-residue-real -rwxr-xr-x root/root 1280 2011-04-14 15:52 ./usr/bin/density-score-by-residue -rwxr-xr-x root/root 1266 2011-04-14 15:52 ./usr/bin/findwaters -rwxr-xr-x root/root 7033 2011-04-14 15:22 ./usr/bin/coots-nest -rwxr-xr-x root/root 1466064 2011-04-14 15:52 ./usr/bin/fix-nomenclature-errors -rwxr-xr-x root/root 9796456 2011-04-14 15:52 ./usr/bin/coot-real -rwxr-xr-x root/root 1392656 2011-04-14 15:52 ./usr/bin/findligand-real -rwxr-xr-x root/root 1260 2011-04-14 15:52 ./usr/bin/coot -rwxr-xr-x root/root 1069816 2011-04-14 15:52 ./usr/bin/findwaters-real coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.changes: Format: 1.8 Date: Thu, 14 Apr 2011 12:37:54 +0200 Source: coot Binary: coot coot-data coot-docs Architecture: amd64 Version: 0.7pre1+svn3470-0ubuntu1~natty1 Distribution: natty Urgency: low Maintainer: Ubuntu/lpia Build Daemon Changed-By: Morten Kjeldgaard Description: coot - model building program for macromolecular crystallography coot-data - various data files needed by Coot coot-docs - documentation for Coot Changes: coot (0.7pre1+svn3470-0ubuntu1~natty1) natty; urgency=low . * Build for natty Checksums-Sha1: 5c3cfa494468419a393f9856e861407bb8b72d30 6645048 coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb Checksums-Sha256: fe20dc812149132eb78af197f9fb39d4fc3a70b68106b27afaf6849341e6606b 6645048 coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb Files: 41f3be507ee81699d7ffa1b3c5d45e79 6645048 science optional coot_0.7pre1+svn3470-0ubuntu1~natty1_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/coot-0.7pre1+svn3470 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libmagickwand3 groff-base python-gobject-dev libavahi-common3 libxfixes-dev libx11-data m4 fontconfig-config gettext file zlib1g-dev libcairo2 x11-common libcairo-gobject2 libx11-dev libxi6 libatk1.0-data sfftw2 libgtkglext1 automake libjpeg62 libxcursor1 python-gtk2 libssm-dev x11proto-input-dev libexpat1-dev libgdk-pixbuf2.0-0 sfftw-dev libjasper1 libgs9-common libpixman-1-dev libxcomposite-dev libfontconfig1 libcupsimage2 freeglut3-dev libgtkglext1-dev libgfortran3 libart-2.0-2 libxcb-shm0-dev python-cairo libx11-6 xtrans-dev x11proto-randr-dev xorg-sgml-doctools libglu1-mesa libxinerama-dev libmpich1.0gf libglib2.0-data libxdamage1 libxt6 libffi5 libxml2-utils libgdk-pixbuf2.0-dev libglib2.0-dev swig libpaper1 imagemagick libgpp4-0 libxml2 libgail-dev x11proto-xext-dev libclipper2 pkg-config libthai-data libtool libice6 intltool-debian python2.7-dev libavahi-client3 libxrender1 libfontconfig1-dev libgail-common libpython2.7 libmmdb-dev mesa-common-dev libxrandr-dev libxext-dev libcups2 libxau-dev libdatrie1 libxmu-headers libxrender-dev libpng12-dev libglu1-mesa-dev libavahi-common-data libxft2 libmmdb0 x11proto-render-dev libxext6 libpipeline1 libltdl7 libsqlite3-0 libdrm-dev libxinerama1 libgsl0ldbl libxdamage-dev libsm-dev libxmu6 libxdmcp-dev gsfonts libssm0 ttf-dejavu-core libgnomecanvas2-0 sharutils libcairo2-dev libgail18 fontconfig libxcb-render0-dev libgnomecanvas2-dev ghostscript autotools-dev libcroco3 libgpp4-dev python-support libxt-dev libpopt0 gir1.2-glib-2.0 libfreetype6 libffi-dev libice-dev libatk1.0-0 libclipper-dev libgl1-mesa-dev x11proto-fixes-dev libfreetype6-dev libgtk2.0-0 python2.7 x11proto-damage-dev libxcb1 libgl1-mesa-glx libart-2.0-dev libijs-0.35 gs-cjk-resource libgoocanvas-common html2text diffstat libglade2-0 libxrandr2 debhelper libpthread-stubs0 libgnomecanvas2-common libgs9 libthai0 python libmagic1 python-gobject libtiff4 libxcb-shm0 libexpat1 libssl-dev bsdmainutils libxau6 libpango1.0-dev libxcursor-dev libxcomposite1 x11proto-composite-dev mime-support x11proto-core-dev libxcb1-dev libxi-dev shared-mime-info libxfixes3 libxdmcp6 python-gtk2-dev libxmu-dev libgtk2.0-dev po-debconf libatk1.0-dev quilt libgoocanvas3 libmagickcore3 libxft-dev liblqr-1-0 libgsl0-dev liblcms1 libgoocanvas-dev python-dev man-db libxxf86vm1 x11proto-kb-dev texinfo fftw2 libpixman-1-0 x11proto-xinerama-dev libpango1.0-0 libpthread-stubs0-dev freeglut3 ucf libgirepository-1.0-1 libgtk2.0-common gettext-base libunistring0 libjbig2dec0 fftw-dev libsm6 libcairo-script-interpreter2 libxcb-render0 libkms1 libglib2.0-bin autoconf (Reading database ... 24693 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055'] Unmounting chroot for build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055'] Removing build 13ab7e8b5b9aa62a89de7e9aea8acbb8ecf9a055