RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd', '/home/buildd/filecache-default/ac07c687a15a0d7295406dd36d280ec0e7616d49'] Uncompressing the tarball... Synching the system clock with the buildd NTP service... 2 Apr 01:02:14 ntpdate[3398]: step time server 10.211.37.1 offset -1515161.748619 sec Unpacking chroot for build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd'] Mounting chroot for build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd', 'deb http://ppa.launchpad.net/mok0/ppa/ubuntu lucid main', 'deb http://ftpmaster.internal/ubuntu lucid main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu lucid-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu lucid-updates main restricted universe multiverse'] Overriding sources.list in build-24571f6c6f8f5d5f0200e437a43ea48aa5a091dd RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd', 'amd64'] Updating debian chroot for build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid-security Release.gpg [198B] Get:3 http://ppa.launchpad.net lucid Release.gpg [316B] Get:4 http://ftpmaster.internal lucid-updates Release.gpg [198B] Get:5 http://ftpmaster.internal lucid Release [57.2kB] Get:6 http://ppa.launchpad.net lucid Release [13.9kB] Get:7 http://ftpmaster.internal lucid-security Release [44.7kB] Ign http://ppa.launchpad.net lucid Release Get:8 http://ppa.launchpad.net lucid/main Packages [4802B] Get:9 http://ftpmaster.internal lucid-updates Release [44.7kB] Get:10 http://ftpmaster.internal lucid/main Packages [1383kB] Get:11 http://ftpmaster.internal lucid/restricted Packages [6193B] Get:12 http://ftpmaster.internal lucid/universe Packages [5430kB] Get:13 http://ftpmaster.internal lucid/multiverse Packages [176kB] Get:14 http://ftpmaster.internal lucid-security/main Packages [161kB] Get:15 http://ftpmaster.internal lucid-security/restricted Packages [14B] Get:16 http://ftpmaster.internal lucid-security/universe Packages [62.8kB] Get:17 http://ftpmaster.internal lucid-security/multiverse Packages [1856B] Get:18 http://ftpmaster.internal lucid-updates/main Packages [460kB] Get:19 http://ftpmaster.internal lucid-updates/restricted Packages [3267B] Get:20 http://ftpmaster.internal lucid-updates/universe Packages [186kB] Get:21 http://ftpmaster.internal lucid-updates/multiverse Packages [8346B] Fetched 8045kB in 3s (2625kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net lucid Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 4612340C1DC81A57 Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https base-files binutils bsdutils bzip2 coreutils dpkg dpkg-dev e2fslibs e2fsprogs gzip ifupdown libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libdbus-1-3 libglib2.0-0 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libpam-modules libpam-runtime libpam0g libplymouth2 libpng12-0 libss2 libssl0.9.8 libudev0 libusb-0.1-4 libuuid1 linux-libc-dev login mount mountall openssl passwd pkg-create-dbgsym plymouth tar tzdata udev upstart util-linux 50 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 28.5MB of archives. After this operation, 131kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libpam-modules base-files coreutils dpkg libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev tzdata e2fslibs e2fsprogs gzip login mount tar libdbus-1-3 libudev0 ifupdown libglib2.0-0 libusb-0.1-4 util-linux udev plymouth libpng12-0 libplymouth2 mountall upstart bsdutils apt libssl0.9.8 libpam0g passwd libuuid1 libblkid1 libcomerr2 libpam-runtime libss2 bzip2 libbz2-1.0 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 apt-transport-https binutils dpkg-dev openssl pkg-create-dbgsym Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid-security/main libpam-modules 1.1.1-2ubuntu5 [380kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid-updates/main base-files 5.0.0ubuntu20.10.04.3 [70.2kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid-updates/main coreutils 7.4-2ubuntu3 [2907kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid-security/main dpkg 1.15.5.6ubuntu4.5 [2254kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid-updates/main libc-dev-bin 2.11.1-0ubuntu7.8 [224kB] Get:6 http://ftpmaster.internal/ubuntu/ lucid-updates/main libc6-dev 2.11.1-0ubuntu7.8 [2706kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid-updates/main libc-bin 2.11.1-0ubuntu7.8 [813kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid-updates/main libc6 2.11.1-0ubuntu7.8 [4252kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid-security/main linux-libc-dev 2.6.32-29.58 [827kB] Get:10 http://ftpmaster.internal/ubuntu/ lucid-updates/main tzdata 2011c-0ubuntu0.10.04 [680kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid-updates/main e2fslibs 1.41.11-1ubuntu2.1 [144kB] Get:12 http://ftpmaster.internal/ubuntu/ lucid-updates/main e2fsprogs 1.41.11-1ubuntu2.1 [808kB] Get:13 http://ftpmaster.internal/ubuntu/ lucid-updates/main gzip 1.3.12-9ubuntu1.1 [107kB] Get:14 http://ftpmaster.internal/ubuntu/ lucid-security/main login 1:4.1.4.2-1ubuntu2.2 [324kB] Get:15 http://ftpmaster.internal/ubuntu/ lucid-updates/main mount 2.17.2-0ubuntu1.10.04.2 [183kB] Get:16 http://ftpmaster.internal/ubuntu/ lucid-updates/main tar 1.22-2ubuntu1 [390kB] Get:17 http://ftpmaster.internal/ubuntu/ lucid-security/main libdbus-1-3 1.2.16-2ubuntu4.1 [143kB] Get:18 http://ftpmaster.internal/ubuntu/ lucid-updates/main libudev0 151-12.3 [121kB] Get:19 http://ftpmaster.internal/ubuntu/ lucid-security/main ifupdown 0.6.8ubuntu29.2 [62.1kB] Get:20 http://ftpmaster.internal/ubuntu/ lucid-updates/main libglib2.0-0 2.24.1-0ubuntu1 [1123kB] Get:21 http://ftpmaster.internal/ubuntu/ lucid-updates/main libusb-0.1-4 2:0.1.12-14ubuntu0.2 [22.0kB] Get:22 http://ftpmaster.internal/ubuntu/ lucid-updates/main util-linux 2.17.2-0ubuntu1.10.04.2 [572kB] Get:23 http://ftpmaster.internal/ubuntu/ lucid-updates/main udev 151-12.3 [464kB] Get:24 http://ftpmaster.internal/ubuntu/ lucid-updates/main plymouth 0.8.2-2ubuntu2.2 [124kB] Get:25 http://ftpmaster.internal/ubuntu/ lucid-security/main libpng12-0 1.2.42-1ubuntu2.1 [180kB] Get:26 http://ftpmaster.internal/ubuntu/ lucid-updates/main libplymouth2 0.8.2-2ubuntu2.2 [101kB] Get:27 http://ftpmaster.internal/ubuntu/ lucid-updates/main mountall 2.15.3 [56.1kB] Get:28 http://ftpmaster.internal/ubuntu/ lucid-updates/main upstart 0.6.5-8 [313kB] Get:29 http://ftpmaster.internal/ubuntu/ lucid-updates/main bsdutils 1:2.17.2-0ubuntu1.10.04.2 [83.4kB] Get:30 http://ftpmaster.internal/ubuntu/ lucid-updates/main apt 0.7.25.3ubuntu9.3 [1818kB] Get:31 http://ftpmaster.internal/ubuntu/ lucid-security/main libssl0.9.8 0.9.8k-7ubuntu8.6 [980kB] Get:32 http://ftpmaster.internal/ubuntu/ lucid-security/main libpam0g 1.1.1-2ubuntu5 [126kB] Get:33 http://ftpmaster.internal/ubuntu/ lucid-security/main passwd 1:4.1.4.2-1ubuntu2.2 [953kB] Get:34 http://ftpmaster.internal/ubuntu/ lucid-updates/main libuuid1 2.17.2-0ubuntu1.10.04.2 [62.2kB] Get:35 http://ftpmaster.internal/ubuntu/ lucid-updates/main libblkid1 2.17.2-0ubuntu1.10.04.2 [112kB] Get:36 http://ftpmaster.internal/ubuntu/ lucid-updates/main libcomerr2 1.41.11-1ubuntu2.1 [51.4kB] Get:37 http://ftpmaster.internal/ubuntu/ lucid-security/main libpam-runtime 1.1.1-2ubuntu5 [115kB] Get:38 http://ftpmaster.internal/ubuntu/ lucid-updates/main libss2 1.41.11-1ubuntu2.1 [56.8kB] Get:39 http://ftpmaster.internal/ubuntu/ lucid-security/main bzip2 1.0.5-4ubuntu0.1 [49.6kB] Get:40 http://ftpmaster.internal/ubuntu/ lucid-security/main libbz2-1.0 1.0.5-4ubuntu0.1 [46.6kB] Get:41 http://ftpmaster.internal/ubuntu/ lucid-security/main libk5crypto3 1.8.1+dfsg-2ubuntu0.6 [104kB] Get:42 http://ftpmaster.internal/ubuntu/ lucid-security/main libgssapi-krb5-2 1.8.1+dfsg-2ubuntu0.6 [129kB] Get:43 http://ftpmaster.internal/ubuntu/ lucid-security/main libkrb5-3 1.8.1+dfsg-2ubuntu0.6 [369kB] Get:44 http://ftpmaster.internal/ubuntu/ lucid-security/main libkrb5support0 1.8.1+dfsg-2ubuntu0.6 [44.5kB] Get:45 http://ftpmaster.internal/ubuntu/ lucid-updates/main libldap-2.4-2 2.4.21-0ubuntu5.3 [215kB] Get:46 http://ftpmaster.internal/ubuntu/ lucid-updates/main apt-transport-https 0.7.25.3ubuntu9.3 [81.1kB] Get:47 http://ftpmaster.internal/ubuntu/ lucid-security/main binutils 2.20.1-3ubuntu7.1 [1658kB] Get:48 http://ftpmaster.internal/ubuntu/ lucid-security/main dpkg-dev 1.15.5.6ubuntu4.5 [654kB] Get:49 http://ftpmaster.internal/ubuntu/ lucid-security/main openssl 0.9.8k-7ubuntu8.6 [406kB] Get:50 http://ftpmaster.internal/ubuntu/ lucid-updates/main pkg-create-dbgsym 0.43 [13.1kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.5MB in 1s (16.1MB/s) (Reading database ... 13354 files and directories currently installed.) Preparing to replace libpam-modules 1.1.1-2ubuntu2 (using .../libpam-modules_1.1.1-2ubuntu5_amd64.deb) ... Unpacking replacement libpam-modules ... Setting up libpam-modules (1.1.1-2ubuntu5) ... (Reading database ... 13354 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu20 (using .../base-files_5.0.0ubuntu20.10.04.3_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu20.10.04.3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13354 files and directories currently installed.) Preparing to replace coreutils 7.4-2ubuntu2 (using .../coreutils_7.4-2ubuntu3_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (7.4-2ubuntu3) ... (Reading database ... 13354 files and directories currently installed.) Preparing to replace dpkg 1.15.5.6ubuntu4 (using .../dpkg_1.15.5.6ubuntu4.5_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.5.6ubuntu4.5) ... (Reading database ... 13354 files and directories currently installed.) Preparing to replace libc-dev-bin 2.11.1-0ubuntu7 (using .../libc-dev-bin_2.11.1-0ubuntu7.8_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.11.1-0ubuntu7 (using .../libc6-dev_2.11.1-0ubuntu7.8_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.11.1-0ubuntu7 (using .../libc-bin_2.11.1-0ubuntu7.8_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.11.1-0ubuntu7.8) ... (Reading database ... 13354 files and directories currently installed.) Preparing to replace libc6 2.11.1-0ubuntu7 (using .../libc6_2.11.1-0ubuntu7.8_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.11.1-0ubuntu7.8) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13354 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.32-21.32 (using .../linux-libc-dev_2.6.32-29.58_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace tzdata 2010i-1 (using .../tzdata_2011c-0ubuntu0.10.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2011c-0ubuntu0.10.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Mar 15 12:10:40 UTC 2011. Universal Time is now: Tue Mar 15 12:10:40 UTC 2011. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13372 files and directories currently installed.) Preparing to replace e2fslibs 1.41.11-1ubuntu2 (using .../e2fslibs_1.41.11-1ubuntu2.1_amd64.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.11-1ubuntu2.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13372 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.11-1ubuntu2 (using .../e2fsprogs_1.41.11-1ubuntu2.1_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.11-1ubuntu2.1) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace gzip 1.3.12-9ubuntu1 (using .../gzip_1.3.12-9ubuntu1.1_amd64.deb) ... Unpacking replacement gzip ... Setting up gzip (1.3.12-9ubuntu1.1) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace login 1:4.1.4.2-1ubuntu2 (using .../login_1%3a4.1.4.2-1ubuntu2.2_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.2-1ubuntu2.2) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace mount 2.17.2-0ubuntu1 (using .../mount_2.17.2-0ubuntu1.10.04.2_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.17.2-0ubuntu1.10.04.2) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace tar 1.22-2 (using .../tar_1.22-2ubuntu1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.22-2ubuntu1) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace libdbus-1-3 1.2.16-2ubuntu4 (using .../libdbus-1-3_1.2.16-2ubuntu4.1_amd64.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libudev0 151-12 (using .../libudev0_151-12.3_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace ifupdown 0.6.8ubuntu29 (using .../ifupdown_0.6.8ubuntu29.2_amd64.deb) ... Unpacking replacement ifupdown ... Preparing to replace libglib2.0-0 2.24.0-0ubuntu4 (using .../libglib2.0-0_2.24.1-0ubuntu1_amd64.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libusb-0.1-4 2:0.1.12-14 (using .../libusb-0.1-4_2%3a0.1.12-14ubuntu0.2_amd64.deb) ... Unpacking replacement libusb-0.1-4 ... Preparing to replace util-linux 2.17.2-0ubuntu1 (using .../util-linux_2.17.2-0ubuntu1.10.04.2_amd64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.17.2-0ubuntu1.10.04.2) ... (Reading database ... 13372 files and directories currently installed.) Preparing to replace udev 151-12 (using .../udev_151-12.3_amd64.deb) ... Adding `local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' Unpacking replacement udev ... Preparing to replace plymouth 0.8.2-2ubuntu2 (using .../plymouth_0.8.2-2ubuntu2.2_amd64.deb) ... Unpacking replacement plymouth ... Preparing to replace libpng12-0 1.2.42-1ubuntu2 (using .../libpng12-0_1.2.42-1ubuntu2.1_amd64.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libplymouth2 0.8.2-2ubuntu2 (using .../libplymouth2_0.8.2-2ubuntu2.2_amd64.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace mountall 2.14 (using .../mountall_2.15.3_amd64.deb) ... Unpacking replacement mountall ... Preparing to replace upstart 0.6.5-6 (using .../upstart_0.6.5-8_amd64.deb) ... Unpacking replacement upstart ... Preparing to replace bsdutils 1:2.17.2-0ubuntu1 (using .../bsdutils_1%3a2.17.2-0ubuntu1.10.04.2_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.17.2-0ubuntu1.10.04.2) ... (Reading database ... 13373 files and directories currently installed.) Preparing to replace apt 0.7.25.3ubuntu7 (using .../apt_0.7.25.3ubuntu9.3_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.7.25.3ubuntu9.3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace libssl0.9.8 0.9.8k-7ubuntu8 (using .../libssl0.9.8_0.9.8k-7ubuntu8.6_amd64.deb) ... Unpacking replacement libssl0.9.8 ... Setting up libssl0.9.8 (0.9.8k-7ubuntu8.6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace libpam0g 1.1.1-2ubuntu2 (using .../libpam0g_1.1.1-2ubuntu5_amd64.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.1.1-2ubuntu5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace passwd 1:4.1.4.2-1ubuntu2 (using .../passwd_1%3a4.1.4.2-1ubuntu2.2_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.2-1ubuntu2.2) ... (Reading database ... 13373 files and directories currently installed.) Preparing to replace libuuid1 2.17.2-0ubuntu1 (using .../libuuid1_2.17.2-0ubuntu1.10.04.2_amd64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.17.2-0ubuntu1.10.04.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace libblkid1 2.17.2-0ubuntu1 (using .../libblkid1_2.17.2-0ubuntu1.10.04.2_amd64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.17.2-0ubuntu1.10.04.2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace libcomerr2 1.41.11-1ubuntu2 (using .../libcomerr2_1.41.11-1ubuntu2.1_amd64.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.11-1ubuntu2.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace libpam-runtime 1.1.1-2ubuntu2 (using .../libpam-runtime_1.1.1-2ubuntu5_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.1-2ubuntu5) ... (Reading database ... 13373 files and directories currently installed.) Preparing to replace libss2 1.41.11-1ubuntu2 (using .../libss2_1.41.11-1ubuntu2.1_amd64.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.11-1ubuntu2.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13373 files and directories currently installed.) Preparing to replace bzip2 1.0.5-4 (using .../bzip2_1.0.5-4ubuntu0.1_amd64.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0 1.0.5-4 (using .../libbz2-1.0_1.0.5-4ubuntu0.1_amd64.deb) ... Unpacking replacement libbz2-1.0 ... Preparing to replace libk5crypto3 1.8.1+dfsg-2 (using .../libk5crypto3_1.8.1+dfsg-2ubuntu0.6_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.8.1+dfsg-2 (using .../libgssapi-krb5-2_1.8.1+dfsg-2ubuntu0.6_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.8.1+dfsg-2 (using .../libkrb5-3_1.8.1+dfsg-2ubuntu0.6_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.8.1+dfsg-2 (using .../libkrb5support0_1.8.1+dfsg-2ubuntu0.6_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libldap-2.4-2 2.4.21-0ubuntu5 (using .../libldap-2.4-2_2.4.21-0ubuntu5.3_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace apt-transport-https 0.7.25.3ubuntu7 (using .../apt-transport-https_0.7.25.3ubuntu9.3_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace binutils 2.20.1-3ubuntu5 (using .../binutils_2.20.1-3ubuntu7.1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace dpkg-dev 1.15.5.6ubuntu4 (using .../dpkg-dev_1.15.5.6ubuntu4.5_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace openssl 0.9.8k-7ubuntu8 (using .../openssl_0.9.8k-7ubuntu8.6_amd64.deb) ... Unpacking replacement openssl ... Preparing to replace pkg-create-dbgsym 0.42 (using .../pkg-create-dbgsym_0.43_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Setting up libc-dev-bin (2.11.1-0ubuntu7.8) ... Setting up linux-libc-dev (2.6.32-29.58) ... Setting up libc6-dev (2.11.1-0ubuntu7.8) ... Setting up libdbus-1-3 (1.2.16-2ubuntu4.1) ... Setting up libudev0 (151-12.3) ... Setting up libglib2.0-0 (2.24.1-0ubuntu1) ... Setting up libusb-0.1-4 (2:0.1.12-14ubuntu0.2) ... Setting up libpng12-0 (1.2.42-1ubuntu2.1) ... Setting up libplymouth2 (0.8.2-2ubuntu2.2) ... Setting up libbz2-1.0 (1.0.5-4ubuntu0.1) ... Setting up bzip2 (1.0.5-4ubuntu0.1) ... Setting up libkrb5support0 (1.8.1+dfsg-2ubuntu0.6) ... Setting up libk5crypto3 (1.8.1+dfsg-2ubuntu0.6) ... Setting up libkrb5-3 (1.8.1+dfsg-2ubuntu0.6) ... Setting up libgssapi-krb5-2 (1.8.1+dfsg-2ubuntu0.6) ... Setting up libldap-2.4-2 (2.4.21-0ubuntu5.3) ... Setting up apt-transport-https (0.7.25.3ubuntu9.3) ... Setting up binutils (2.20.1-3ubuntu7.1) ... Setting up dpkg-dev (1.15.5.6ubuntu4.5) ... Setting up openssl (0.9.8k-7ubuntu8.6) ... Setting up pkg-create-dbgsym (0.43) ... Setting up mountall (2.15.3) ... Installing new version of config file /etc/init/mountall.conf ... Setting up upstart (0.6.5-8) ... Setting up ifupdown (0.6.8ubuntu29.2) ... Setting up udev (151-12.3) ... Removing `local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up plymouth (0.8.2-2ubuntu2.2) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd', 'amd64', 'lucid', '--nolog', '--batch', '--archive=ubuntu', '--dist=lucid', '--purpose=PPA', '--architecture=amd64', '--comp=main', 'coot_0.7pre1+svn3406-0ubuntu3~lucid1.dsc'] Initiating build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd with 2 processor cores. Automatic build of coot_0.7pre1+svn3406-0ubuntu3~lucid1 on charichuelo by sbuild/amd64 1.170.5 Build started at 20110315-1211 ****************************************************************************** coot_0.7pre1+svn3406-0ubuntu3~lucid1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), autotools-dev, automake, libtool, quilt, libmmdb-dev (>= 1.23), libclipper-dev, libgpp4-dev, libssm-dev (>= 1.1), libgsl0-dev, libglib2.0-dev, libgtk2.0-dev, libgtkglext1-dev, freeglut3-dev, libgnomecanvas2-dev, libgoocanvas-dev, python-dev, python-gtk2-dev, swig (>= 1.3.36), texinfo, imagemagick, ghostscript, sharutils Checking for already installed source dependencies... debhelper: missing autotools-dev: missing automake: missing libtool: missing quilt: missing libmmdb-dev: missing libclipper-dev: missing libgpp4-dev: missing libssm-dev: missing libgsl0-dev: missing libglib2.0-dev: missing libgtk2.0-dev: missing libgtkglext1-dev: missing freeglut3-dev: missing libgnomecanvas2-dev: missing libgoocanvas-dev: missing python-dev: missing python-gtk2-dev: missing swig: missing texinfo: missing imagemagick: missing ghostscript: missing sharutils: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev automake libtool quilt libmmdb-dev libclipper-dev libgpp4-dev libssm-dev libgsl0-dev libglib2.0-dev libgtk2.0-dev libgtkglext1-dev freeglut3-dev libgnomecanvas2-dev libgoocanvas-dev python-dev python-gtk2-dev swig texinfo imagemagick ghostscript sharutils Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf bsdmainutils defoma diffstat fftw-dev fftw2 file fontconfig fontconfig-config freeglut3 gettext gettext-base groff-base gsfonts html2text intltool-debian libart-2.0-2 libart-2.0-dev libatk1.0-0 libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcairo2-dev libclipper2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdirectfb-1.2-0 libdirectfb-dev libdirectfb-extra libdrm-dev libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgail-common libgail-dev libgail18 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglade2-0 libglu1-mesa libglu1-mesa-dev libgnomecanvas2-0 libgnomecanvas2-common libgoocanvas-common libgoocanvas3 libgpp4-0 libgs8 libgsl0ldbl libgtk2.0-0 libgtk2.0-common libgtkglext1 libice-dev libice6 libjasper1 libjpeg62 libjpeg62-dev liblcms1 libltdl7 libmagic1 libmagickcore2 libmagickwand2 libmmdb0 libmpich1.0gf libncursesw5 libnewt0.52 libpango1.0-0 libpango1.0-common libpango1.0-dev libpaper1 libpixman-1-0 libpixman-1-dev libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libsm-dev libsm6 libsqlite3-0 libssm0 libsysfs-dev libsysfs2 libthai-data libthai0 libtiff4 libts-0.0-0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render-util0 libxcb-render-util0-dev libxcb-render0 libxcb-render0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-cairo python-gobject python-gobject-dev python-gtk2 python-support python2.6 python2.6-dev sfftw-dev sfftw2 shared-mime-info tsconf ttf-dejavu-core ucf whiptail x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make defoma-doc psfontmgr x-ttcidfont-conf dfontmgr libfont-freetype-perl mpich-bin gettext-doc ghostscript-cups ghostscript-x hpijs groff imagemagick-doc transfig libcairo2-doc libclipper-doc cups-common libgail-doc libglib2.0-doc python-subunit libgnomecanvas2-doc libgpp4-doc gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html librsvg2-common gvfs libgtk2.0-doc libjasper-runtime liblcms-utils ttf-japanese-gothic ttf-japanese-mincho ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libpango1.0-doc libtool-doc automaken gfortran fortran95-compiler gcj less www-browser libmail-box-perl python-doc python-tk python-profiler python-gobject-dbg python-gtk2-doc python-numpy python2.6-doc python2.6-profiler procmail graphviz mailx swig-examples swig-doc texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree Recommended packages: curl wget lynx cvs libmagickcore2-extra libatk1.0-data libgl1-mesa-dri hicolor-icon-theme libgtk2.0-bin libgpm2 libfribidi0 libpaper-utils libltdl-dev xml-core libmail-sendmail-perl docbook-xsl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper defoma diffstat fftw-dev fftw2 file fontconfig fontconfig-config freeglut3 freeglut3-dev gettext gettext-base ghostscript groff-base gsfonts html2text imagemagick intltool-debian libart-2.0-2 libart-2.0-dev libatk1.0-0 libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcairo2-dev libclipper-dev libclipper2 libcroco3 libcups2 libcupsimage2 libdatrie1 libdirectfb-1.2-0 libdirectfb-dev libdirectfb-extra libdrm-dev libexpat1 libexpat1-dev libffi-dev libffi5 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgail-common libgail-dev libgail18 libgfortran3 libgl1-mesa-dev libgl1-mesa-glx libglade2-0 libglib2.0-dev libglu1-mesa libglu1-mesa-dev libgnomecanvas2-0 libgnomecanvas2-common libgnomecanvas2-dev libgoocanvas-common libgoocanvas-dev libgoocanvas3 libgpp4-0 libgpp4-dev libgs8 libgsl0-dev libgsl0ldbl libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libgtkglext1 libgtkglext1-dev libice-dev libice6 libjasper1 libjpeg62 libjpeg62-dev liblcms1 libltdl7 libmagic1 libmagickcore2 libmagickwand2 libmmdb-dev libmmdb0 libmpich1.0gf libncursesw5 libnewt0.52 libpango1.0-0 libpango1.0-common libpango1.0-dev libpaper1 libpixman-1-0 libpixman-1-dev libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpython2.6 libsm-dev libsm6 libsqlite3-0 libssm-dev libssm0 libsysfs-dev libsysfs2 libthai-data libthai0 libtiff4 libtool libts-0.0-0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render-util0 libxcb-render-util0-dev libxcb-render0 libxcb-render0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxrandr-dev libxrandr2 libxrender-dev libxrender1 libxt-dev libxt6 libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-cairo python-dev python-gobject python-gobject-dev python-gtk2 python-gtk2-dev python-support python2.6 python2.6-dev quilt sfftw-dev sfftw2 shared-mime-info sharutils swig texinfo tsconf ttf-dejavu-core ucf whiptail x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xtrans-dev zlib1g-dev 0 upgraded, 194 newly installed, 0 to remove and 0 not upgraded. Need to get 74.1MB of archives. After this operation, 269MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libice6 x11proto-core-dev libice-dev libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev libxext6 libxfixes3 libxcomposite1 x11proto-xext-dev x11proto-fixes-dev libxfixes-dev x11proto-composite-dev libxext-dev libxcomposite-dev libxmu-headers libmagic1 file libncursesw5 libnewt0.52 libpopt0 libsqlite3-0 mime-support python2.6 python ucf whiptail bsdmainutils gettext-base groff-base libexpat1 libxml2 man-db python-support m4 autoconf autotools-dev automake html2text libcroco3 gettext intltool-debian po-debconf debhelper defoma diffstat libgfortran3 libmpich1.0gf fftw2 fftw-dev libfreetype6 ttf-dejavu-core fontconfig-config libfontconfig1 fontconfig libxdamage1 libxxf86vm1 libgl1-mesa-glx libxi6 freeglut3 libdrm-dev mesa-common-dev libgl1-mesa-dev libglu1-mesa libglu1-mesa-dev libsm6 libxt6 libsm-dev libxt-dev freeglut3-dev libavahi-common-data libavahi-common3 libavahi-client3 libcups2 libjpeg62 libtiff4 libcupsimage2 libpaper1 libgs8 gsfonts ghostscript liblcms1 libltdl7 libjasper1 libmagickcore2 libmagickwand2 imagemagick libart-2.0-2 pkg-config libart-2.0-dev libatk1.0-0 zlib1g-dev libglib2.0-dev libatk1.0-dev libsysfs2 tsconf libts-0.0-0 libdirectfb-1.2-0 libpixman-1-0 libxcb-render0 libxcb-render-util0 libxrender1 libcairo2 libexpat1-dev libfreetype6-dev libfontconfig1-dev x11proto-render-dev libxrender-dev libpng12-dev libdirectfb-extra libjpeg62-dev libsysfs-dev libdirectfb-dev libpixman-1-dev libxcb-render0-dev libxcb-render-util0-dev libcairo2-dev libgpp4-0 libmmdb0 sfftw2 libclipper2 libmmdb-dev libgpp4-dev sfftw-dev libclipper-dev libdatrie1 libpango1.0-common libthai-data libthai0 libxft2 libpango1.0-0 libxcursor1 libxinerama1 libxrandr2 libgtk2.0-common shared-mime-info libgtk2.0-0 libgail18 libgail-common libxft-dev libpango1.0-dev x11proto-xinerama-dev libxinerama-dev libxi-dev x11proto-randr-dev libxrandr-dev libxcursor-dev x11proto-damage-dev libxdamage-dev libxml2-utils libgtk2.0-dev libgail-dev libglade2-0 libgnomecanvas2-common libgnomecanvas2-0 libgnomecanvas2-dev libgoocanvas-common libgoocanvas3 libgoocanvas-dev libgsl0ldbl libgsl0-dev libxmu6 libgtkglext1 libxmu-dev libgtkglext1-dev libpython2.6 libssm0 libssm-dev libtool python-cairo python2.6-dev python-dev libffi5 python-gobject libffi-dev python-gobject-dev python-gtk2 python-gtk2-dev quilt sharutils swig texinfo Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid/main x11-common 1:7.5+5ubuntu1 [308kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid/main libice6 2:1.0.6-1 [54.3kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-core-dev 7.0.16-1 [92.2kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid/main libice-dev 2:1.0.6-1 [67.1kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid/main libxau6 1:1.0.5-1 [14.5kB] Get:6 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libgpp4-0 1.3.1-0ubuntu1~lucid1 [132kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid/main libxdmcp6 1:1.0.3-1 [19.1kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid/main libxcb1 1.5-2 [42.9kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid/main libx11-data 2:1.3.2-1ubuntu3 [220kB] Get:10 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libmmdb0 1.23.2.1-0ubuntu1~lucid1 [418kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid/main libx11-6 2:1.3.2-1ubuntu3 [844kB] Get:12 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libclipper2 2.1+20100511-0ubuntu1~lucid1 [898kB] Get:13 http://ftpmaster.internal/ubuntu/ lucid/main libxau-dev 1:1.0.5-1 [17.9kB] Get:14 http://ftpmaster.internal/ubuntu/ lucid/main libxdmcp-dev 1:1.0.3-1 [22.6kB] Get:15 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-input-dev 2.0-2 [62.5kB] Get:16 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-kb-dev 1.0.4-1 [27.3kB] Get:17 http://ftpmaster.internal/ubuntu/ lucid/main xtrans-dev 1.2.5-1 [68.5kB] Get:18 http://ftpmaster.internal/ubuntu/ lucid/main libpthread-stubs0 0.3-2 [3202B] Get:19 http://ftpmaster.internal/ubuntu/ lucid/main libpthread-stubs0-dev 0.3-2 [2412B] Get:20 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libmmdb-dev 1.23.2.1-0ubuntu1~lucid1 [608kB] Get:21 http://ftpmaster.internal/ubuntu/ lucid/main libxcb1-dev 1.5-2 [80.0kB] Get:22 http://ftpmaster.internal/ubuntu/ lucid/main libx11-dev 2:1.3.2-1ubuntu3 [3558kB] Get:23 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libgpp4-dev 1.3.1-0ubuntu1~lucid1 [175kB] Get:24 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libclipper-dev 2.1+20100511-0ubuntu1~lucid1 [1268kB] Get:25 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libssm0 1.1-0ubuntu1~lucid1 [74.0kB] Get:26 http://ppa.launchpad.net/mok0/ppa/ubuntu/ lucid/main libssm-dev 1.1-0ubuntu1~lucid1 [87.1kB] Get:27 http://ftpmaster.internal/ubuntu/ lucid/main libxext6 2:1.1.1-2 [43.2kB] Get:28 http://ftpmaster.internal/ubuntu/ lucid/main libxfixes3 1:4.0.4-1 [16.3kB] Get:29 http://ftpmaster.internal/ubuntu/ lucid/main libxcomposite1 1:0.4.1-1 [12.9kB] Get:30 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-xext-dev 7.1.1-2 [27.2kB] Get:31 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-fixes-dev 1:4.1.1-2 [15.5kB] Get:32 http://ftpmaster.internal/ubuntu/ lucid/main libxfixes-dev 1:4.0.4-1 [18.7kB] Get:33 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-composite-dev 1:0.4.1-1 [13.3kB] Get:34 http://ftpmaster.internal/ubuntu/ lucid/main libxext-dev 2:1.1.1-2 [107kB] Get:35 http://ftpmaster.internal/ubuntu/ lucid/main libxcomposite-dev 1:0.4.1-1 [16.1kB] Get:36 http://ftpmaster.internal/ubuntu/ lucid/main libxmu-headers 2:1.0.5-1 [22.7kB] Get:37 http://ftpmaster.internal/ubuntu/ lucid/main libmagic1 5.03-5ubuntu1 [392kB] Get:38 http://ftpmaster.internal/ubuntu/ lucid/main file 5.03-5ubuntu1 [48.0kB] Get:39 http://ftpmaster.internal/ubuntu/ lucid/main libncursesw5 5.7+20090803-2ubuntu3 [229kB] Get:40 http://ftpmaster.internal/ubuntu/ lucid/main libnewt0.52 0.52.10-5ubuntu1 [57.5kB] Get:41 http://ftpmaster.internal/ubuntu/ lucid/main libpopt0 1.15-1 [32.6kB] Get:42 http://ftpmaster.internal/ubuntu/ lucid/main libsqlite3-0 3.6.22-1 [307kB] Get:43 http://ftpmaster.internal/ubuntu/ lucid/main mime-support 3.48-1ubuntu1 [34.6kB] Get:44 http://ftpmaster.internal/ubuntu/ lucid/main python2.6 2.6.5-1ubuntu6 [2531kB] Get:45 http://ftpmaster.internal/ubuntu/ lucid/main python 2.6.5-0ubuntu1 [148kB] Get:46 http://ftpmaster.internal/ubuntu/ lucid/main ucf 3.0025 [68.1kB] Get:47 http://ftpmaster.internal/ubuntu/ lucid/main whiptail 0.52.10-5ubuntu1 [39.8kB] Get:48 http://ftpmaster.internal/ubuntu/ lucid/main bsdmainutils 8.0.1ubuntu1 [199kB] Get:49 http://ftpmaster.internal/ubuntu/ lucid/main gettext-base 0.17-8ubuntu3 [78.0kB] Get:50 http://ftpmaster.internal/ubuntu/ lucid/main groff-base 1.20.1-7 [1130kB] Get:51 http://ftpmaster.internal/ubuntu/ lucid/main libexpat1 2.0.1-7ubuntu1 [138kB] Get:52 http://ftpmaster.internal/ubuntu/ lucid-security/main libxml2 2.7.6.dfsg-1ubuntu1.1 [873kB] Get:53 http://ftpmaster.internal/ubuntu/ lucid-updates/main man-db 2.5.7-2ubuntu1 [1404kB] Get:54 http://ftpmaster.internal/ubuntu/ lucid/main python-support 1.0.4ubuntu1 [32.0kB] Get:55 http://ftpmaster.internal/ubuntu/ lucid/main m4 1.4.13-3 [286kB] Get:56 http://ftpmaster.internal/ubuntu/ lucid/main autoconf 2.65-3ubuntu1 [772kB] Get:57 http://ftpmaster.internal/ubuntu/ lucid/main autotools-dev 20090611.1 [64.1kB] Get:58 http://ftpmaster.internal/ubuntu/ lucid/main automake 1:1.11.1-1 [608kB] Get:59 http://ftpmaster.internal/ubuntu/ lucid/main html2text 1.3.2a-14build1 [104kB] Get:60 http://ftpmaster.internal/ubuntu/ lucid/main libcroco3 0.6.2-1 [101kB] Get:61 http://ftpmaster.internal/ubuntu/ lucid/main gettext 0.17-8ubuntu3 [1805kB] Get:62 http://ftpmaster.internal/ubuntu/ lucid/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:63 http://ftpmaster.internal/ubuntu/ lucid/main po-debconf 1.0.16 [224kB] Get:64 http://ftpmaster.internal/ubuntu/ lucid/main debhelper 7.4.15ubuntu1 [461kB] Get:65 http://ftpmaster.internal/ubuntu/ lucid/main defoma 0.11.10-4ubuntu1 [101kB] Get:66 http://ftpmaster.internal/ubuntu/ lucid/main diffstat 1.47-1build1 [24.8kB] Get:67 http://ftpmaster.internal/ubuntu/ lucid/main libgfortran3 4.4.3-4ubuntu5 [293kB] Get:68 http://ftpmaster.internal/ubuntu/ lucid/universe libmpich1.0gf 1.2.7-9.1ubuntu1 [746kB] Get:69 http://ftpmaster.internal/ubuntu/ lucid/universe fftw2 2.1.3-22 [273kB] Get:70 http://ftpmaster.internal/ubuntu/ lucid/universe fftw-dev 2.1.3-22 [322kB] Get:71 http://ftpmaster.internal/ubuntu/ lucid-security/main libfreetype6 2.3.11-1ubuntu2.4 [435kB] Get:72 http://ftpmaster.internal/ubuntu/ lucid/main ttf-dejavu-core 2.30-2 [1436kB] Get:73 http://ftpmaster.internal/ubuntu/ lucid/main fontconfig-config 2.8.0-2ubuntu1 [205kB] Get:74 http://ftpmaster.internal/ubuntu/ lucid/main libfontconfig1 2.8.0-2ubuntu1 [285kB] Get:75 http://ftpmaster.internal/ubuntu/ lucid/main fontconfig 2.8.0-2ubuntu1 [158kB] Get:76 http://ftpmaster.internal/ubuntu/ lucid/main libxdamage1 1:1.1.2-1 [12.3kB] Get:77 http://ftpmaster.internal/ubuntu/ lucid/main libxxf86vm1 1:1.1.0-2 [15.6kB] Get:78 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgl1-mesa-glx 7.7.1-1ubuntu3 [141kB] Get:79 http://ftpmaster.internal/ubuntu/ lucid/main libxi6 2:1.3-3 [56.0kB] Get:80 http://ftpmaster.internal/ubuntu/ lucid/main freeglut3 2.6.0-0ubuntu2 [140kB] Get:81 http://ftpmaster.internal/ubuntu/ lucid/main libdrm-dev 2.4.18-1ubuntu3 [524kB] Get:82 http://ftpmaster.internal/ubuntu/ lucid-updates/main mesa-common-dev 7.7.1-1ubuntu3 [2339kB] Get:83 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgl1-mesa-dev 7.7.1-1ubuntu3 [31.5kB] Get:84 http://ftpmaster.internal/ubuntu/ lucid-updates/main libglu1-mesa 7.7.1-1ubuntu3 [191kB] Get:85 http://ftpmaster.internal/ubuntu/ lucid-updates/main libglu1-mesa-dev 7.7.1-1ubuntu3 [226kB] Get:86 http://ftpmaster.internal/ubuntu/ lucid/main libsm6 2:1.1.1-1 [25.4kB] Get:87 http://ftpmaster.internal/ubuntu/ lucid/main libxt6 1:1.0.7-1 [195kB] Get:88 http://ftpmaster.internal/ubuntu/ lucid/main libsm-dev 2:1.1.1-1 [28.3kB] Get:89 http://ftpmaster.internal/ubuntu/ lucid/main libxt-dev 1:1.0.7-1 [525kB] Get:90 http://ftpmaster.internal/ubuntu/ lucid/main freeglut3-dev 2.6.0-0ubuntu2 [214kB] Get:91 http://ftpmaster.internal/ubuntu/ lucid-security/main libavahi-common-data 0.6.25-1ubuntu6.2 [34.8kB] Get:92 http://ftpmaster.internal/ubuntu/ lucid-security/main libavahi-common3 0.6.25-1ubuntu6.2 [25.5kB] Get:93 http://ftpmaster.internal/ubuntu/ lucid-security/main libavahi-client3 0.6.25-1ubuntu6.2 [56.7kB] Get:94 http://ftpmaster.internal/ubuntu/ lucid-security/main libcups2 1.4.3-1ubuntu1.3 [224kB] Get:95 http://ftpmaster.internal/ubuntu/ lucid/main libjpeg62 6b-15ubuntu1 [94.5kB] Get:96 http://ftpmaster.internal/ubuntu/ lucid-security/main libtiff4 3.9.2-2ubuntu0.5 [149kB] Get:97 http://ftpmaster.internal/ubuntu/ lucid-security/main libcupsimage2 1.4.3-1ubuntu1.3 [53.1kB] Get:98 http://ftpmaster.internal/ubuntu/ lucid/main libpaper1 1.1.23+nmu1build1 [21.2kB] Get:99 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgs8 8.71.dfsg.1-0ubuntu5.3 [2490kB] Get:100 http://ftpmaster.internal/ubuntu/ lucid/main gsfonts 1:8.11+urwcyr1.0.7~pre44-4 [3322kB] Get:101 http://ftpmaster.internal/ubuntu/ lucid-updates/main ghostscript 8.71.dfsg.1-0ubuntu5.3 [786kB] Get:102 http://ftpmaster.internal/ubuntu/ lucid-security/main liblcms1 1.18.dfsg-1ubuntu2.10.04.1 [111kB] Get:103 http://ftpmaster.internal/ubuntu/ lucid/main libltdl7 2.2.6b-2ubuntu1 [296kB] Get:104 http://ftpmaster.internal/ubuntu/ lucid/main libjasper1 1.900.1-7 [154kB] Get:105 http://ftpmaster.internal/ubuntu/ lucid-security/main libmagickcore2 7:6.5.7.8-1ubuntu1.1 [1744kB] Get:106 http://ftpmaster.internal/ubuntu/ lucid-security/main libmagickwand2 7:6.5.7.8-1ubuntu1.1 [409kB] Get:107 http://ftpmaster.internal/ubuntu/ lucid-security/main imagemagick 7:6.5.7.8-1ubuntu1.1 [103kB] Get:108 http://ftpmaster.internal/ubuntu/ lucid/main libart-2.0-2 2.3.20-2build1 [58.1kB] Get:109 http://ftpmaster.internal/ubuntu/ lucid/main pkg-config 0.22-1build2 [55.8kB] Get:110 http://ftpmaster.internal/ubuntu/ lucid/main libart-2.0-dev 2.3.20-2build1 [75.8kB] Get:111 http://ftpmaster.internal/ubuntu/ lucid-updates/main libatk1.0-0 1.30.0-0ubuntu2.1 [58.3kB] Get:112 http://ftpmaster.internal/ubuntu/ lucid/main zlib1g-dev 1:1.2.3.3.dfsg-15ubuntu1 [167kB] Get:113 http://ftpmaster.internal/ubuntu/ lucid-updates/main libglib2.0-dev 2.24.1-0ubuntu1 [1279kB] Get:114 http://ftpmaster.internal/ubuntu/ lucid-updates/main libatk1.0-dev 1.30.0-0ubuntu2.1 [116kB] Get:115 http://ftpmaster.internal/ubuntu/ lucid/main libsysfs2 2.1.0-6 [23.9kB] Get:116 http://ftpmaster.internal/ubuntu/ lucid/main tsconf 1.0-7build1 [12.8kB] Get:117 http://ftpmaster.internal/ubuntu/ lucid/main libts-0.0-0 1.0-7build1 [29.1kB] Get:118 http://ftpmaster.internal/ubuntu/ lucid/main libdirectfb-1.2-0 1.2.8-5ubuntu2 [1191kB] Get:119 http://ftpmaster.internal/ubuntu/ lucid/main libpixman-1-0 0.16.4-1ubuntu2 [237kB] Get:120 http://ftpmaster.internal/ubuntu/ lucid/main libxcb-render0 1.5-2 [15.5kB] Get:121 http://ftpmaster.internal/ubuntu/ lucid/main libxcb-render-util0 0.3.6-1build1 [10.1kB] Get:122 http://ftpmaster.internal/ubuntu/ lucid/main libxrender1 1:0.9.5-1 [28.8kB] Get:123 http://ftpmaster.internal/ubuntu/ lucid/main libcairo2 1.8.10-2ubuntu1 [530kB] Get:124 http://ftpmaster.internal/ubuntu/ lucid/main libexpat1-dev 2.0.1-7ubuntu1 [220kB] Get:125 http://ftpmaster.internal/ubuntu/ lucid-security/main libfreetype6-dev 2.3.11-1ubuntu2.4 [740kB] Get:126 http://ftpmaster.internal/ubuntu/ lucid/main libfontconfig1-dev 2.8.0-2ubuntu1 [657kB] Get:127 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-render-dev 2:0.11-1 [7404B] Get:128 http://ftpmaster.internal/ubuntu/ lucid/main libxrender-dev 1:0.9.5-1 [36.9kB] Get:129 http://ftpmaster.internal/ubuntu/ lucid-security/main libpng12-dev 1.2.42-1ubuntu2.1 [272kB] Get:130 http://ftpmaster.internal/ubuntu/ lucid/main libdirectfb-extra 1.2.8-5ubuntu2 [36.8kB] Get:131 http://ftpmaster.internal/ubuntu/ lucid/main libjpeg62-dev 6b-15ubuntu1 [199kB] Get:132 http://ftpmaster.internal/ubuntu/ lucid/main libsysfs-dev 2.1.0-6 [37.2kB] Get:133 http://ftpmaster.internal/ubuntu/ lucid/main libdirectfb-dev 1.2.8-5ubuntu2 [924kB] Get:134 http://ftpmaster.internal/ubuntu/ lucid/main libpixman-1-dev 0.16.4-1ubuntu2 [264kB] Get:135 http://ftpmaster.internal/ubuntu/ lucid/main libxcb-render0-dev 1.5-2 [23.2kB] Get:136 http://ftpmaster.internal/ubuntu/ lucid/main libxcb-render-util0-dev 0.3.6-1build1 [7744B] Get:137 http://ftpmaster.internal/ubuntu/ lucid/main libcairo2-dev 1.8.10-2ubuntu1 [632kB] Get:138 http://ftpmaster.internal/ubuntu/ lucid/universe sfftw2 2.1.3-22 [267kB] Get:139 http://ftpmaster.internal/ubuntu/ lucid/universe sfftw-dev 2.1.3-22 [316kB] Get:140 http://ftpmaster.internal/ubuntu/ lucid/main libdatrie1 0.2.2-3 [25.6kB] Get:141 http://ftpmaster.internal/ubuntu/ lucid-security/main libpango1.0-common 1.28.0-0ubuntu2.2 [111kB] Get:142 http://ftpmaster.internal/ubuntu/ lucid/main libthai-data 0.1.13-1build1 [196kB] Get:143 http://ftpmaster.internal/ubuntu/ lucid/main libthai0 0.1.13-1build1 [40.7kB] Get:144 http://ftpmaster.internal/ubuntu/ lucid/main libxft2 2.1.14-1ubuntu1 [56.0kB] Get:145 http://ftpmaster.internal/ubuntu/ lucid-security/main libpango1.0-0 1.28.0-0ubuntu2.2 [326kB] Get:146 http://ftpmaster.internal/ubuntu/ lucid/main libxcursor1 1:1.1.10-1 [25.6kB] Get:147 http://ftpmaster.internal/ubuntu/ lucid/main libxinerama1 2:1.1-2 [12.3kB] Get:148 http://ftpmaster.internal/ubuntu/ lucid/main libxrandr2 2:1.3.0-3 [28.4kB] Get:149 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgtk2.0-common 2.20.1-0ubuntu2 [723kB] Get:150 http://ftpmaster.internal/ubuntu/ lucid/main shared-mime-info 0.71-1ubuntu2 [431kB] Get:151 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgtk2.0-0 2.20.1-0ubuntu2 [2720kB] Get:152 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgail18 2.20.1-0ubuntu2 [341kB] Get:153 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgail-common 2.20.1-0ubuntu2 [469kB] Get:154 http://ftpmaster.internal/ubuntu/ lucid/main libxft-dev 2.1.14-1ubuntu1 [72.1kB] Get:155 http://ftpmaster.internal/ubuntu/ lucid-security/main libpango1.0-dev 1.28.0-0ubuntu2.2 [466kB] Get:156 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-xinerama-dev 1.2-2 [4782B] Get:157 http://ftpmaster.internal/ubuntu/ lucid/main libxinerama-dev 2:1.1-2 [14.9kB] Get:158 http://ftpmaster.internal/ubuntu/ lucid/main libxi-dev 2:1.3-3 [139kB] Get:159 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-randr-dev 1.3.1-1 [38.2kB] Get:160 http://ftpmaster.internal/ubuntu/ lucid/main libxrandr-dev 2:1.3.0-3 [35.9kB] Get:161 http://ftpmaster.internal/ubuntu/ lucid/main libxcursor-dev 1:1.1.10-1 [33.8kB] Get:162 http://ftpmaster.internal/ubuntu/ lucid/main x11proto-damage-dev 1:1.2.0-1 [10.2kB] Get:163 http://ftpmaster.internal/ubuntu/ lucid/main libxdamage-dev 1:1.1.2-1 [11.9kB] Get:164 http://ftpmaster.internal/ubuntu/ lucid-security/main libxml2-utils 2.7.6.dfsg-1ubuntu1.1 [92.8kB] Get:165 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgtk2.0-dev 2.20.1-0ubuntu2 [4177kB] Get:166 http://ftpmaster.internal/ubuntu/ lucid-updates/main libgail-dev 2.20.1-0ubuntu2 [342kB] Get:167 http://ftpmaster.internal/ubuntu/ lucid/main libglade2-0 1:2.6.4-1build1 [54.1kB] Get:168 http://ftpmaster.internal/ubuntu/ lucid/main libgnomecanvas2-common 2.30.1-0ubuntu1 [11.0kB] Get:169 http://ftpmaster.internal/ubuntu/ lucid/main libgnomecanvas2-0 2.30.1-0ubuntu1 [103kB] Get:170 http://ftpmaster.internal/ubuntu/ lucid/main libgnomecanvas2-dev 2.30.1-0ubuntu1 [128kB] Get:171 http://ftpmaster.internal/ubuntu/ lucid/main libgoocanvas-common 0.15-0ubuntu2 [9932B] Get:172 http://ftpmaster.internal/ubuntu/ lucid/main libgoocanvas3 0.15-0ubuntu2 [118kB] Get:173 http://ftpmaster.internal/ubuntu/ lucid/main libgoocanvas-dev 0.15-0ubuntu2 [275kB] Get:174 http://ftpmaster.internal/ubuntu/ lucid/main libgsl0ldbl 1.13+dfsg-1 [974kB] Get:175 http://ftpmaster.internal/ubuntu/ lucid/main libgsl0-dev 1.13+dfsg-1 [1221kB] Get:176 http://ftpmaster.internal/ubuntu/ lucid/main libxmu6 2:1.0.5-1 [57.5kB] Get:177 http://ftpmaster.internal/ubuntu/ lucid/universe libgtkglext1 1.2.0-1ubuntu1 [122kB] Get:178 http://ftpmaster.internal/ubuntu/ lucid/main libxmu-dev 2:1.0.5-1 [66.5kB] Get:179 http://ftpmaster.internal/ubuntu/ lucid/universe libgtkglext1-dev 1.2.0-1ubuntu1 [460kB] Get:180 http://ftpmaster.internal/ubuntu/ lucid/main libpython2.6 2.6.5-1ubuntu6 [1074kB] Get:181 http://ftpmaster.internal/ubuntu/ lucid/main libtool 2.2.6b-2ubuntu1 [524kB] Get:182 http://ftpmaster.internal/ubuntu/ lucid/main python-cairo 1.8.8-1 [51.9kB] Get:183 http://ftpmaster.internal/ubuntu/ lucid/main python2.6-dev 2.6.5-1ubuntu6 [4787kB] Get:184 http://ftpmaster.internal/ubuntu/ lucid/main python-dev 2.6.5-0ubuntu1 [970B] Get:185 http://ftpmaster.internal/ubuntu/ lucid/main libffi5 3.0.9-1 [19.9kB] Get:186 http://ftpmaster.internal/ubuntu/ lucid/main python-gobject 2.21.1-0ubuntu3 [241kB] Get:187 http://ftpmaster.internal/ubuntu/ lucid/main libffi-dev 3.0.9-1 [103kB] Get:188 http://ftpmaster.internal/ubuntu/ lucid/main python-gobject-dev 2.21.1-0ubuntu3 [273kB] Get:189 http://ftpmaster.internal/ubuntu/ lucid/main python-gtk2 2.17.0-0ubuntu2 [895kB] Get:190 http://ftpmaster.internal/ubuntu/ lucid/main python-gtk2-dev 2.17.0-0ubuntu2 [155kB] Get:191 http://ftpmaster.internal/ubuntu/ lucid/main quilt 0.48-5 [318kB] Get:192 http://ftpmaster.internal/ubuntu/ lucid/main sharutils 1:4.6.3-4 [104kB] Get:193 http://ftpmaster.internal/ubuntu/ lucid/main swig 1.3.40-2ubuntu1 [1234kB] Get:194 http://ftpmaster.internal/ubuntu/ lucid/main texinfo 4.13a.dfsg.1-5ubuntu1 [553kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.1MB in 5s (14.6MB/s) Selecting previously deselected package x11-common. (Reading database ... 13372 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.5+5ubuntu1_all.deb) ... Selecting previously deselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.16-1_all.deb) ... Setting up x11-common (1:7.5+5ubuntu1) ... Selecting previously deselected package libice-dev. (Reading database ... 13492 files and directories currently installed.) Unpacking libice-dev (from .../libice-dev_2%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.5-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-1_amd64.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.5-2_amd64.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.3.2-1ubuntu3_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.3.2-1ubuntu3_amd64.deb) ... Selecting previously deselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.5-1_amd64.deb) ... Selecting previously deselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.0.3-1_amd64.deb) ... Selecting previously deselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0-2_all.deb) ... Selecting previously deselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.4-1_all.deb) ... Selecting previously deselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.5-1_all.deb) ... Selecting previously deselected package libpthread-stubs0. 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Unpacking file (from .../file_5.03-5ubuntu1_amd64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090803-2ubuntu3_amd64.deb) ... Selecting previously deselected package libnewt0.52. Unpacking libnewt0.52 (from .../libnewt0.52_0.52.10-5ubuntu1_amd64.deb) ... Selecting previously deselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.15-1_amd64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.22-1_amd64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.5-1ubuntu6_amd64.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.5-0ubuntu1_all.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../archives/ucf_3.0025_all.deb) ... Moving old data out of the way Selecting previously deselected package whiptail. Unpacking whiptail (from .../whiptail_0.52.10-5ubuntu1_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.1ubuntu1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu3_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-7_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu1_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.6.dfsg-1ubuntu1.1_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.7-2ubuntu1_amd64.deb) ... Selecting previously deselected package python-support. 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Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.15ubuntu1_all.deb) ... Selecting previously deselected package defoma. Unpacking defoma (from .../defoma_0.11.10-4ubuntu1_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1build1_amd64.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.3-4ubuntu5_amd64.deb) ... Selecting previously deselected package libmpich1.0gf. Unpacking libmpich1.0gf (from .../libmpich1.0gf_1.2.7-9.1ubuntu1_amd64.deb) ... Selecting previously deselected package fftw2. Unpacking fftw2 (from .../fftw2_2.1.3-22_amd64.deb) ... Selecting previously deselected package fftw-dev. Unpacking fftw-dev (from .../fftw-dev_2.1.3-22_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.3.11-1ubuntu2.4_amd64.deb) ... Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.30-2_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2ubuntu1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2ubuntu1_amd64.deb) ... Selecting previously deselected package fontconfig. Unpacking fontconfig (from .../fontconfig_2.8.0-2ubuntu1_amd64.deb) ... Selecting previously deselected package libxdamage1. Unpacking libxdamage1 (from .../libxdamage1_1%3a1.1.2-1_amd64.deb) ... Selecting previously deselected package libxxf86vm1. Unpacking libxxf86vm1 (from .../libxxf86vm1_1%3a1.1.0-2_amd64.deb) ... 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Setting up libice6 (2:1.0.6-1) ... Setting up x11proto-core-dev (7.0.16-1) ... Setting up libice-dev (2:1.0.6-1) ... Setting up libxau6 (1:1.0.5-1) ... Setting up libxdmcp6 (1:1.0.3-1) ... Setting up libxcb1 (1.5-2) ... Setting up libx11-data (2:1.3.2-1ubuntu3) ... Setting up libx11-6 (2:1.3.2-1ubuntu3) ... Setting up libxau-dev (1:1.0.5-1) ... Setting up libxdmcp-dev (1:1.0.3-1) ... Setting up x11proto-input-dev (2.0-2) ... Setting up x11proto-kb-dev (1.0.4-1) ... Setting up xtrans-dev (1.2.5-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.5-2) ... Setting up libx11-dev (2:1.3.2-1ubuntu3) ... Setting up libxext6 (2:1.1.1-2) ... Setting up libxfixes3 (1:4.0.4-1) ... Setting up libxcomposite1 (1:0.4.1-1) ... Setting up x11proto-xext-dev (7.1.1-2) ... Setting up x11proto-fixes-dev (1:4.1.1-2) ... Setting up libxfixes-dev (1:4.0.4-1) ... Setting up x11proto-composite-dev (1:0.4.1-1) ... 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Setting up libfontconfig1 (2.8.0-2ubuntu1) ... Setting up fontconfig (2.8.0-2ubuntu1) ... Updating font configuration of fontconfig... Cleaning up category cid.. Cleaning up category truetype.. Cleaning up category type1.. Updating category type1.. Updating category truetype.. Updating category cid.. Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libxdamage1 (1:1.1.2-1) ... Setting up libxxf86vm1 (1:1.1.0-2) ... Setting up libgl1-mesa-glx (7.7.1-1ubuntu3) ... update-alternatives: using /usr/lib/mesa/ld.so.conf to provide /etc/ld.so.conf.d/GL.conf (gl_conf) in auto mode. Setting up libxi6 (2:1.3-3) ... Setting up freeglut3 (2.6.0-0ubuntu2) ... Setting up libdrm-dev (2.4.18-1ubuntu3) ... Setting up mesa-common-dev (7.7.1-1ubuntu3) ... Setting up libgl1-mesa-dev (7.7.1-1ubuntu3) ... Setting up libglu1-mesa (7.7.1-1ubuntu3) ... Setting up libglu1-mesa-dev (7.7.1-1ubuntu3) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libxt6 (1:1.0.7-1) ... Setting up libsm-dev (2:1.1.1-1) ... Setting up libxt-dev (1:1.0.7-1) ... Setting up freeglut3-dev (2.6.0-0ubuntu2) ... Setting up libavahi-common-data (0.6.25-1ubuntu6.2) ... Setting up libavahi-common3 (0.6.25-1ubuntu6.2) ... Setting up libavahi-client3 (0.6.25-1ubuntu6.2) ... Setting up libcups2 (1.4.3-1ubuntu1.3) ... Setting up libjpeg62 (6b-15ubuntu1) ... Setting up libtiff4 (3.9.2-2ubuntu0.5) ... Setting up libcupsimage2 (1.4.3-1ubuntu1.3) ... Setting up libpaper1 (1.1.23+nmu1build1) ... Creating config file /etc/papersize with new version Setting up libgs8 (8.71.dfsg.1-0ubuntu5.3) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4) ... (Re-)registering PostScript fonts... Updating fontconfig cache for /usr/share/fonts/type1/gsfonts done. Setting up ghostscript (8.71.dfsg.1-0ubuntu5.3) ... update-alternatives: using /usr/bin/ps2pdf14 to provide /usr/bin/ps2pdf (ps2pdf) in auto mode. Updating font configuration of gs... Cleaning up category psprint.. Cleaning up category cmap.. Cleaning up category cid.. Cleaning up category truetype.. Cleaning up category gsfontderivative.. Cleaning up category type3.. Cleaning up category type1.. Updating category type1.. Updating category type3.. Updating category gsfontderivative.. Updating category truetype.. Updating category cid.. Updating category cmap.. Updating category psprint.. Setting up liblcms1 (1.18.dfsg-1ubuntu2.10.04.1) ... Setting up libltdl7 (2.2.6b-2ubuntu1) ... Setting up libjasper1 (1.900.1-7) ... Setting up libmagickcore2 (7:6.5.7.8-1ubuntu1.1) ... Setting up libmagickwand2 (7:6.5.7.8-1ubuntu1.1) ... Setting up imagemagick (7:6.5.7.8-1ubuntu1.1) ... Setting up libart-2.0-2 (2.3.20-2build1) ... Setting up pkg-config (0.22-1build2) ... Setting up libart-2.0-dev (2.3.20-2build1) ... Setting up libatk1.0-0 (1.30.0-0ubuntu2.1) ... Setting up zlib1g-dev (1:1.2.3.3.dfsg-15ubuntu1) ... Setting up libglib2.0-dev (2.24.1-0ubuntu1) ... Setting up libatk1.0-dev (1.30.0-0ubuntu2.1) ... Setting up libsysfs2 (2.1.0-6) ... Setting up tsconf (1.0-7build1) ... Setting up libts-0.0-0 (1.0-7build1) ... Setting up libdirectfb-1.2-0 (1.2.8-5ubuntu2) ... Setting up libpixman-1-0 (0.16.4-1ubuntu2) ... Setting up libxcb-render0 (1.5-2) ... Setting up libxcb-render-util0 (0.3.6-1build1) ... Setting up libxrender1 (1:0.9.5-1) ... Setting up libcairo2 (1.8.10-2ubuntu1) ... Setting up libexpat1-dev (2.0.1-7ubuntu1) ... Setting up libfreetype6-dev (2.3.11-1ubuntu2.4) ... Setting up libfontconfig1-dev (2.8.0-2ubuntu1) ... Setting up x11proto-render-dev (2:0.11-1) ... Setting up libxrender-dev (1:0.9.5-1) ... Setting up libpng12-dev (1.2.42-1ubuntu2.1) ... Setting up libdirectfb-extra (1.2.8-5ubuntu2) ... Setting up libjpeg62-dev (6b-15ubuntu1) ... Setting up libsysfs-dev (2.1.0-6) ... Setting up libdirectfb-dev (1.2.8-5ubuntu2) ... Setting up libpixman-1-dev (0.16.4-1ubuntu2) ... Setting up libxcb-render0-dev (1.5-2) ... Setting up libxcb-render-util0-dev (0.3.6-1build1) ... Setting up libcairo2-dev (1.8.10-2ubuntu1) ... Setting up libgpp4-0 (1.3.1-0ubuntu1~lucid1) ... Setting up libmmdb0 (1.23.2.1-0ubuntu1~lucid1) ... Setting up sfftw2 (2.1.3-22) ... Setting up libclipper2 (2.1+20100511-0ubuntu1~lucid1) ... Setting up libmmdb-dev (1.23.2.1-0ubuntu1~lucid1) ... Setting up libgpp4-dev (1.3.1-0ubuntu1~lucid1) ... Setting up sfftw-dev (2.1.3-22) ... Setting up libclipper-dev (2.1+20100511-0ubuntu1~lucid1) ... Setting up libdatrie1 (0.2.2-3) ... Setting up libpango1.0-common (1.28.0-0ubuntu2.2) ... Cleaning up font configuration of pango... Updating font configuration of pango... Cleaning up category xfont.. Updating category xfont.. *** You don't have any defomized font packages. *** So we are trying to force to generate pangox.aliases... Setting up libthai-data (0.1.13-1build1) ... Setting up libthai0 (0.1.13-1build1) ... Setting up libxft2 (2.1.14-1ubuntu1) ... Setting up libpango1.0-0 (1.28.0-0ubuntu2.2) ... Setting up libxcursor1 (1:1.1.10-1) ... Setting up libxinerama1 (2:1.1-2) ... Setting up libxrandr2 (2:1.3.0-3) ... Setting up libgtk2.0-common (2.20.1-0ubuntu2) ... Setting up shared-mime-info (0.71-1ubuntu2) ... Setting up libgtk2.0-0 (2.20.1-0ubuntu2) ... Setting up libgail18 (2.20.1-0ubuntu2) ... Setting up libgail-common (2.20.1-0ubuntu2) ... Setting up libxft-dev (2.1.14-1ubuntu1) ... Setting up libpango1.0-dev (1.28.0-0ubuntu2.2) ... Setting up x11proto-xinerama-dev (1.2-2) ... Setting up libxinerama-dev (2:1.1-2) ... Setting up libxi-dev (2:1.3-3) ... Setting up x11proto-randr-dev (1.3.1-1) ... Setting up libxrandr-dev (2:1.3.0-3) ... Setting up libxcursor-dev (1:1.1.10-1) ... Setting up x11proto-damage-dev (1:1.2.0-1) ... Setting up libxdamage-dev (1:1.1.2-1) ... Setting up libxml2-utils (2.7.6.dfsg-1ubuntu1.1) ... Setting up libgtk2.0-dev (2.20.1-0ubuntu2) ... Setting up libgail-dev (2.20.1-0ubuntu2) ... Setting up libglade2-0 (1:2.6.4-1build1) ... Setting up libgnomecanvas2-common (2.30.1-0ubuntu1) ... Setting up libgnomecanvas2-0 (2.30.1-0ubuntu1) ... Setting up libgnomecanvas2-dev (2.30.1-0ubuntu1) ... Setting up libgoocanvas-common (0.15-0ubuntu2) ... Setting up libgoocanvas3 (0.15-0ubuntu2) ... Setting up libgoocanvas-dev (0.15-0ubuntu2) ... Setting up libgsl0ldbl (1.13+dfsg-1) ... Setting up libgsl0-dev (1.13+dfsg-1) ... Setting up libxmu6 (2:1.0.5-1) ... Setting up libgtkglext1 (1.2.0-1ubuntu1) ... Setting up libxmu-dev (2:1.0.5-1) ... Setting up libgtkglext1-dev (1.2.0-1ubuntu1) ... Setting up libpython2.6 (2.6.5-1ubuntu6) ... Setting up libssm0 (1.1-0ubuntu1~lucid1) ... Setting up libssm-dev (1.1-0ubuntu1~lucid1) ... Setting up libtool (2.2.6b-2ubuntu1) ... Setting up python-cairo (1.8.8-1) ... Setting up python2.6-dev (2.6.5-1ubuntu6) ... Setting up python-dev (2.6.5-0ubuntu1) ... Setting up libffi5 (3.0.9-1) ... Setting up python-gobject (2.21.1-0ubuntu3) ... Setting up libffi-dev (3.0.9-1) ... Setting up python-gobject-dev (2.21.1-0ubuntu3) ... Setting up python-gtk2 (2.17.0-0ubuntu2) ... Setting up python-gtk2-dev (2.17.0-0ubuntu2) ... Setting up quilt (0.48-5) ... Setting up sharutils (1:4.6.3-4) ... Setting up swig (1.3.40-2ubuntu1) ... Setting up texinfo (4.13a.dfsg.1-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.11.1-0ubuntu7.8 make_3.81-7ubuntu1 dpkg-dev_1.15.5.6ubuntu4.5 g++-4.4_4.4.3-4ubuntu5 gcc-4.4_4.4.3-4ubuntu5 binutils_2.20.1-3ubuntu7.1 libstdc++6_4.4.3-4ubuntu5 libstdc++6-4.4-dev_4.4.3-4ubuntu5 ------------------------------------------------------------------------------ gpgv: Signature made Tue Mar 15 11:16:14 2011 UTC using DSA key ID 404825E7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./coot_0.7pre1+svn3406-0ubuntu3~lucid1.dsc dpkg-source: info: extracting coot in coot-0.7pre1+svn3406 dpkg-source: info: unpacking coot_0.7pre1+svn3406.orig.tar.gz dpkg-source: info: applying coot_0.7pre1+svn3406-0ubuntu3~lucid1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package coot dpkg-buildpackage: source version 0.7pre1+svn3406-0ubuntu3~lucid1 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp autoconf-stamp # Clean up after the build process. [ ! -f Makefile ] || /usr/bin/make distclean dh_clean rm -f debian/coot.substvars rm -f debian/coot.*.debhelper rm -f debian/coot.debhelper.log rm -rf debian/coot/ rm -f debian/coot-data.substvars rm -f debian/coot-data.*.debhelper rm -f debian/coot-data.debhelper.log rm -rf debian/coot-data/ rm -f debian/coot-docs.substvars rm -f debian/coot-docs.*.debhelper rm -f debian/coot-docs.debhelper.log rm -rf debian/coot-docs/ rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch lbg_makefile.am.diff patching file lbg/Makefile.am Applying patch application_path.diff patching file python/coot_utils.py Applying patch command-line.diff patching file src/command-line.hh Applying patch configure-fftw-prefix.diff patching file configure.in patching file macros/clipper.m4 Applying patch coot-history.diff patching file src/globjects.cc Applying patch splash-screen.diff patching file src/gtk2-interface.c Applying patch ac_init.diff patching file configure.in Applying patch convenience-libraries.diff patching file analysis/Makefile.am patching file angles/Makefile.am patching file build/Makefile.am patching file ccp4mg-utils/Makefile.am patching file compat/Makefile.am patching file coords/Makefile.am patching file coot-surface/Makefile.am patching file coot-utils/Makefile.am patching file cootaneer/Makefile.am patching file db-main/Makefile.am patching file density-contour/Makefile.am patching file geometry/Makefile.am patching file high-res/Makefile.am patching file ideal/Makefile.am patching file lbg/Makefile.am patching file lidia-core/Makefile.am patching file ligand/Makefile.am patching file mini-mol/Makefile.am patching file skeleton/Makefile.am patching file surface/Makefile.am patching file utils/Makefile.am patching file tw/Makefile.am patching file protein_db/Makefile.am Applying patch doc_makefile.am.diff patching file doc/Makefile.am Applying patch refman.diff patching file doc/coot-reference-manual.texi Applying patch userman.diff patching file doc/coot-user-manual.texi Applying patch coot-plain-2.eps.diff patching file doc/coot-plain-2.eps Applying patch check_for_updates.diff patching file python/coot_load_modules.py patching file python/extensions.py Applying patch optparse.diff patching file src/cmdline.ggo patching file src/Makefile.am patching file src/command-line.cc patching file src/cmdline.c patching file src/cmdline.h Now at patch optparse.diff touch debian/stamp-patched autoreconf --install --force libtoolize: putting auxiliary files in `.'. libtoolize: copying file `./config.guess' libtoolize: copying file `./config.sub' libtoolize: copying file `./install-sh' libtoolize: copying file `./ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `macros'. libtoolize: copying file `macros/libtool.m4' libtoolize: copying file `macros/ltoptions.m4' libtoolize: copying file `macros/ltsugar.m4' libtoolize: copying file `macros/ltversion.m4' libtoolize: copying file `macros/lt~obsolete.m4' doc/Makefile.am:2: installing `doc/mdate-sh' touch autoconf-stamp dh_testdir ./configure --prefix=/usr \ --with-gtk2 \ --with-mmdb-prefix=/usr \ --with-ssmlib-prefix=/usr \ --with-fftw-library-prefix=s \ --with-gpp4 \ --with-python \ --with-pygtk=/usr checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for gcc option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for CCP4... yes checking for MMDB... yes checking for SSMLib... /usr checking for Clipper... yes Not using guile checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for guile-gtk... checking libglade... no checking for Goocanvas... yes Not using database checking for curl >= 7.9.7... FAILED configure: WARNING: curl-config was not found checking build type... Linux-x86_64-ubuntu-10.04.2-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating rama-data/Makefile config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: executing depfiles commands config.status: executing libtool commands g++ -o get-svn-revision -I./src debian/get-svn-revision.cpp dh_testdir /usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT" make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' Making all in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making all in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' Making all in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' Making all in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' Making all in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making all in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/scheme' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/scheme' Making all in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python' Making all in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/macros' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/macros' Making all in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/compat' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -fPIC -DPIC -o .libs/getopt.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&1 mv -f .deps/getopt.Tpo .deps/getopt.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -fPIC -DPIC -o .libs/getopt1.o libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -Wall -g -O2 -D_REENTRANT -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o >/dev/null 2>&1 mv -f .deps/getopt1.Tpo .deps/getopt1.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -Wall -g -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o libcoot-compat.la getopt.lo getopt1.lo libtool: link: ar cru .libs/libcoot-compat.a .libs/getopt.o .libs/getopt1.o libtool: link: ranlib .libs/libcoot-compat.a libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/compat' Making all in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o >/dev/null 2>&1 mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o >/dev/null 2>&1 mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -o atomic-numbers.o >/dev/null 2>&1 mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c -o gdk-keysyms.lo gdk-keysyms.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -fPIC -DPIC -o .libs/gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -o gdk-keysyms.o >/dev/null 2>&1 mv -f .deps/gdk-keysyms.Tpo .deps/gdk-keysyms.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-utils.la coot-utils.lo coot-fasta.lo atomic-numbers.lo gdk-keysyms.lo libtool: link: ar cru .libs/libcoot-utils.a .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o .libs/gdk-keysyms.o libtool: link: ranlib .libs/libcoot-utils.a libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/utils' Making all in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c -o protein_db.lo protein_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -fPIC -DPIC -o .libs/protein_db.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -o protein_db.o >/dev/null 2>&1 mv -f .deps/protein_db.Tpo .deps/protein_db.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c -o protein_db_utils.lo protein_db_utils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -fPIC -DPIC -o .libs/protein_db_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -o protein_db_utils.o >/dev/null 2>&1 mv -f .deps/protein_db_utils.Tpo .deps/protein_db_utils.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-protein-db.la protein_db.lo protein_db_utils.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: ar cru .libs/libcoot-protein-db.a .libs/protein_db.o .libs/protein_db_utils.o libtool: link: ranlib .libs/libcoot-protein-db.a libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' Making all in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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"-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT energy-lib.lo -MD -MP -MF .deps/energy-lib.Tpo -c energy-lib.cc -fPIC -DPIC -o .libs/energy-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc -fPIC -DPIC -o .libs/lbg-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-graph.lo -MD -MP -MF .deps/lbg-graph.Tpo -c lbg-graph.cc -o lbg-graph.o >/dev/null 2>&1 mv -f .deps/lbg-graph.Tpo .deps/lbg-graph.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-geometry.la protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo lbg-graph.lo ../utils/libcoot-utils.la -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-geometry.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/geometry/../utils/.libs/libcoot-utils.a") libtool: link: ar cru .libs/libcoot-geometry.a .libs/protein-geometry.o .libs/protein-geometry-mmdb.o .libs/read-sbase.o .libs/energy-lib.o .libs/lbg-graph.o .libs/libcoot-geometry.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-geometry.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-geometry.lax/libcoot-utils.a/coot-fasta.o libtool: link: ranlib .libs/libcoot-geometry.a libtool: link: rm -fr .libs/libcoot-geometry.lax libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-geometry.o -MD -MP -MF .deps/test-geometry.Tpo -c -o test-geometry.o test-geometry.cc mv -f .deps/test-geometry.Tpo .deps/test-geometry.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-geometry test-geometry.o ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I../utils -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-read-components.o -MD -MP -MF .deps/test-read-components.Tpo -c -o test-read-components.o test-read-components.cc mv -f .deps/test-read-components.Tpo .deps/test-read-components.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o ./libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-read-components test-read-components.o ./.libs/libcoot-geometry.a -L/usr/lib -L/usr ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/geometry' Making all in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o >/dev/null 2>&1 mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o >/dev/null 2>&1 mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -fPIC -DPIC -o .libs/atom-quads.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -o atom-quads.o >/dev/null 2>&1 mv -f .deps/atom-quads.Tpo .deps/atom-quads.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-mini-mol.la mini-mol.lo mini-mol-utils.lo atom-quads.lo -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcoot-mini-mol.a .libs/mini-mol.o .libs/mini-mol-utils.o .libs/atom-quads.o libtool: link: ranlib .libs/libcoot-mini-mol.a libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT testminimol.o -MD -MP -MF .deps/testminimol.Tpo -c -o testminimol.o testminimol.cc mv -f .deps/testminimol.Tpo .deps/testminimol.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o testminimol testminimol.o libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o testminimol testminimol.o ./.libs/libcoot-mini-mol.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' Making all in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 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"/build/buildd/coot-0.7pre1+svn3406/coot-utils/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt1-gdk-keysyms.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coord-utils.lax/lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt2-coot-utils.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coord-utils.lax/lt2-coot-utils.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt3-atomic-numbers.o || cp .libs/libcoot-coord-utils.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coord-utils.lax/lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-coord-utils.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coord-utils.lax/lt4-coot-fasta.o || cp 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.libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-shelx.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-shelx.lax/lt2-gdk-keysyms.o .libs/libcoot-shelx.lax/lt3-coot-utils.o .libs/libcoot-shelx.lax/lt4-atomic-numbers.o .libs/libcoot-shelx.lax/lt5-coot-fasta.o libtool: link: ranlib .libs/libcoot-shelx.a libtool: link: rm -fr .libs/libcoot-shelx.lax .libs/libcoot-shelx.lax libtool: link: ( cd ".libs" && rm -f "libcoot-shelx.la" && ln -s "../libcoot-shelx.la" "libcoot-shelx.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c -o coot-coord-extras.lo coot-coord-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" 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-I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c -o coot-coord-lsq.lo coot-coord-lsq.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL 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-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -o coot-fffear.o >/dev/null 2>&1 mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-map-heavy.la coot-map-heavy.lo coot-fffear.lo ../mini-mol/libcoot-mini-mol.la libcoot-map-utils.la libcoot-coord-utils.la ../utils/libcoot-utils.la -L/usr/lib -lgsl -lgslcblas -lm libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coot-utils/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coot-utils/./.libs/libcoot-map-utils.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coot-utils/./.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-map-heavy.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coot-utils/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt2-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt2-gdk-keysyms.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt3-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt4-read-sbase.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-map-heavy.lax/lt4-read-sbase.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt5-coot-coord-utils-nucleotides.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt5-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt6-lt1-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt6-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-map-heavy.lax/lt7-lt4-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-coord-utils.a/lt4-coot-fasta.o 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.libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt21-atomic-numbers.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-map-heavy.lax/lt21-atomic-numbers.o libtool: link: ln .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt22-coot-fasta.o || cp .libs/libcoot-map-heavy.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-map-heavy.lax/lt22-coot-fasta.o libtool: link: ar cru .libs/libcoot-map-heavy.a .libs/coot-map-heavy.o .libs/coot-fffear.o 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.libs/libcoot-map-heavy.lax/libcoot-map-utils.a/peak-search-from-list.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/xmap-stats.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/peak-search.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt2-coot-utils.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/trim.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-map-heavy.lax/libcoot-map-utils.a/lt3-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt2-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt3-coot-utils.o .libs/libcoot-map-heavy.lax/lt4-read-sbase.o .libs/libcoot-map-heavy.lax/lt5-coot-coord-utils-nucleotides.o .libs/libcoot-map-heavy.lax/lt6-lt1-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt7-lt4-coot-fasta.o .libs/libcoot-map-heavy.lax/lt8-protein-geometry-mmdb.o .libs/libcoot-map-heavy.lax/lt9-coot-h-bonds.o .libs/libcoot-map-heavy.lax/lt10-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt11-coot-fasta.o .libs/libcoot-map-heavy.lax/lt12-coot-rama.o .libs/libcoot-map-heavy.lax/lt13-energy-lib.o .libs/libcoot-map-heavy.lax/lt14-protein-geometry.o .libs/libcoot-map-heavy.lax/lt15-coot-coord-utils.o .libs/libcoot-map-heavy.lax/lt16-lt2-coot-utils.o .libs/libcoot-map-heavy.lax/lt17-lbg-graph.o .libs/libcoot-map-heavy.lax/lt18-lt3-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt19-gdk-keysyms.o .libs/libcoot-map-heavy.lax/lt20-coot-utils.o .libs/libcoot-map-heavy.lax/lt21-atomic-numbers.o .libs/libcoot-map-heavy.lax/lt22-coot-fasta.o libtool: link: ranlib .libs/libcoot-map-heavy.a libtool: link: rm -fr .libs/libcoot-map-heavy.lax .libs/libcoot-map-heavy.lax libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-h-bonds.o -MD -MP -MF .deps/test-h-bonds.Tpo -c -o test-h-bonds.o test-h-bonds.cc mv -f .deps/test-h-bonds.Tpo .deps/test-h-bonds.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o test-h-bonds test-h-bonds.o ../geometry/libcoot-geometry.la ./libcoot-coord-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o test-h-bonds test-h-bonds.o ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ./.libs/libcoot-coord-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-shelx-reader.o -MD -MP -MF .deps/test-shelx-reader.Tpo -c -o test-shelx-reader.o test-shelx-reader.cc mv -f .deps/test-shelx-reader.Tpo .deps/test-shelx-reader.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testshelxreader test-shelx-reader.o ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../geometry -I../compat -I../mini-mol -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT test-utils.o -MD -MP -MF .deps/test-utils.Tpo -c -o test-utils.o test-utils.cc mv -f .deps/test-utils.Tpo .deps/test-utils.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-extras.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o testcootutils test-utils.o ./.libs/libcoot-shelx.a -L/usr/lib -L/usr ./.libs/libcoot-coord-extras.a ./.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread ../utils/.libs/libcoot-utils.a make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' Making all in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c -o CXXSphereElement.lo CXXSphereElement.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp -o CXXSphereElement.o >/dev/null 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -o CXXSphereNode.o >/dev/null 2>&1 mv -f .deps/CXXSphereNode.Tpo .deps/CXXSphereNode.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c -o CXXSphereTriangle.lo CXXSphereTriangle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils 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-DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -o CXXCircleNode.o >/dev/null 2>&1 mv -f .deps/CXXCircleNode.Tpo .deps/CXXCircleNode.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c -o CXXSphereTriangleEdge.lo CXXSphereTriangleEdge.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -o CXXSphereTriangleEdge.o >/dev/null 2>&1 mv -f .deps/CXXSphereTriangleEdge.Tpo .deps/CXXSphereTriangleEdge.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c -o CXXCoord.lo CXXCoord.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCoord.lo -MD -MP -MF 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c -o CXXSurface.lo CXXSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb 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-DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c -o CXXTorusElement.lo CXXTorusElement.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. 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-DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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"-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -o CXXQADSurface.o >/dev/null 2>&1 mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo CXXQADSurfaceStaticData.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -o CXXQADSurfaceStaticData.o >/dev/null 2>&1 mv -f .deps/CXXQADSurfaceStaticData.Tpo .deps/CXXQADSurfaceStaticData.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c -o CXXSpace.lo CXXSpace.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o >/dev/null 2>&1 mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c -o CXXUtils.lo CXXUtils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -fPIC -DPIC -o .libs/CXXUtils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -fopenmp -g -O2 -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -o CXXUtils.o >/dev/null 2>&1 mv -f .deps/CXXUtils.Tpo .deps/CXXUtils.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o libccp4mg-surface.la CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: ar cru .libs/libccp4mg-surface.a .libs/CXXSphereElement.o .libs/CXXChargeTable.o .libs/CXXSphereNode.o .libs/CXXCircle.o .libs/CXXSphereTriangle.o .libs/CXXCircleNode.o .libs/CXXSphereTriangleEdge.o .libs/CXXCoord.o .libs/CXXSurface.o .libs/CXXCreator.o .libs/CXXSurfaceVertex.o .libs/CXXException.o .libs/CXXTorusElement.o .libs/CXXFFTSolventMap.o .libs/CXXTorusNode.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXTriangle.o .libs/CXXNode.o .libs/CXXQADSurface.o .libs/CXXBall.o .libs/CXXQADSurfaceStaticData.o .libs/CXXSpace.o .libs/CXXUtils.o libtool: link: ranlib .libs/libccp4mg-surface.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-surface.la" && ln -s "../libccp4mg-surface.la" "libccp4mg-surface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/surface' Making all in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -fPIC -DPIC -o .libs/coot-surface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o >/dev/null 2>&1 mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -fPIC -DPIC -o .libs/rgbreps.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../surface -I../coot-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o >/dev/null 2>&1 mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-surface.la coot-surface.lo rgbreps.lo ../surface/libccp4mg-surface.la -lglut -lXmu -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-surface.lax/libccp4mg-surface.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coot-surface/../surface/.libs/libccp4mg-surface.a") libtool: link: ar cru .libs/libcoot-surface.a .libs/coot-surface.o .libs/rgbreps.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFFTSolventMap.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurface.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXBall.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTorusNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereElement.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCreator.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSphereTriangleEdge.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXUtils.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXFortranFile.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXChargeTable.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCoord.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNewHood.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXCircleNode.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSurfaceVertex.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXSpace.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXQADSurfaceStaticData.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXException.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXTriangle.o .libs/libcoot-surface.lax/libccp4mg-surface.a/CXXNode.o libtool: link: ranlib .libs/libcoot-surface.a libtool: link: rm -fr .libs/libcoot-surface.lax libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' Making all in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c -o lbg-molfile.lo lbg-molfile.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -fPIC -DPIC -o .libs/lbg-molfile.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -o lbg-molfile.o >/dev/null 2>&1 mv -f .deps/lbg-molfile.Tpo .deps/lbg-molfile.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c -o lig-build.lo lig-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -fPIC -DPIC -o .libs/lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O2 -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -o lig-build.o >/dev/null 2>&1 mv -f .deps/lig-build.Tpo .deps/lig-build.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-lidia-core.la lbg-molfile.lo lig-build.lo libtool: link: ar cru .libs/libcoot-lidia-core.a .libs/lbg-molfile.o .libs/lig-build.o libtool: link: ranlib .libs/libcoot-lidia-core.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' Making all in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coords' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c -o Bond_lines.lo Bond_lines.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c Bond_lines.cc -fPIC -DPIC -o .libs/Bond_lines.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 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-DDATADIR=\"/usr/share\" -g -O2 -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -fPIC -DPIC -o .libs/Cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -o Cartesian.o >/dev/null 2>&1 mv -f .deps/Cartesian.Tpo 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-DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -fPIC -DPIC -o .libs/cos-sin.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -o cos-sin.o >/dev/null 2>&1 mv -f .deps/cos-sin.Tpo .deps/cos-sin.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc -o mmdb-crystal.o >/dev/null 2>&1 mv -f .deps/mmdb-crystal.Tpo .deps/mmdb-crystal.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c -o Bond_lines_ext.lo Bond_lines_ext.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../skeleton -I../utils -I../coot-utils -I../geometry -I../mini-mol -I../compat -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o >/dev/null 2>&1 mv -f .deps/coot-close.Tpo .deps/coot-close.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-coords.la Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo ../lidia-core/libcoot-lidia-core.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-coords.lax/libcoot-lidia-core.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../lidia-core/.libs/libcoot-lidia-core.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-shelx.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../coot-utils/.libs/libcoot-shelx.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../utils/.libs/libcoot-utils.a") libtool: link: (cd .libs/libcoot-coords.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/coords/../mini-mol/.libs/libcoot-mini-mol.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt1-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt2-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/coot-utils.o .libs/libcoot-coords.lax/lt2-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt3-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/read-sbase.o .libs/libcoot-coords.lax/lt3-read-sbase.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt4-lt1-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt4-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt5-protein-geometry-mmdb.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt6-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/atomic-numbers.o .libs/libcoot-coords.lax/lt6-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/coot-fasta.o .libs/libcoot-coords.lax/lt7-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/coot-fasta.o .libs/libcoot-coords.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt8-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/energy-lib.o .libs/libcoot-coords.lax/lt8-energy-lib.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o .libs/libcoot-coords.lax/lt9-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/protein-geometry.o .libs/libcoot-coords.lax/lt9-protein-geometry.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt10-lt2-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt10-lt2-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt11-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-shelx.a/lbg-graph.o .libs/libcoot-coords.lax/lt11-lbg-graph.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt12-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt12-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt13-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt13-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt14-read-sbase.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-coords.lax/lt14-read-sbase.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt15-coot-coord-utils-nucleotides.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt15-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt16-lt1-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt16-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-coords.lax/lt17-lt4-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-coords.lax/lt17-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt18-protein-geometry-mmdb.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt18-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt19-coot-h-bonds.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt19-coot-h-bonds.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt20-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt20-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt21-coot-fasta.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt22-coot-rama.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-coords.lax/lt22-coot-rama.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt23-energy-lib.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-coords.lax/lt23-energy-lib.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt24-protein-geometry.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-coords.lax/lt24-protein-geometry.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt25-coot-coord-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt25-coot-coord-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt26-lt2-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-coords.lax/lt26-lt2-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt27-lbg-graph.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-coords.lax/lt27-lbg-graph.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-coords.lax/lt28-lt3-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-coords.lax/lt28-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt29-gdk-keysyms.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-coords.lax/lt29-gdk-keysyms.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-coords.lax/lt30-coot-utils.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt31-atomic-numbers.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-coords.lax/lt31-atomic-numbers.o libtool: link: ln .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt32-coot-fasta.o || cp .libs/libcoot-coords.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-coords.lax/lt32-coot-fasta.o libtool: link: ar cru .libs/libcoot-coords.a .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lig-build.o .libs/libcoot-coords.lax/libcoot-lidia-core.a/lbg-molfile.o .libs/libcoot-coords.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-coords.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-coords.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-coords.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-coords.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-coords.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-coords.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-coords.lax/lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt2-coot-utils.o .libs/libcoot-coords.lax/lt3-read-sbase.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt4-lt1-gdk-keysyms.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-coot-fasta.o .libs/libcoot-coords.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-coot-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-h-bonds.o .libs/libcoot-coords.lax/lt6-atomic-numbers.o .libs/libcoot-coords.lax/lt7-coot-fasta.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-rama.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt5-coot-fasta.o .libs/libcoot-coords.lax/lt8-energy-lib.o .libs/libcoot-coords.lax/lt9-protein-geometry.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-coord-utils.o .libs/libcoot-coords.lax/lt10-lt2-coot-utils.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt2-gdk-keysyms.o .libs/libcoot-coords.lax/lt11-lbg-graph.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt3-atomic-numbers.o .libs/libcoot-coords.lax/libcoot-shelx.a/coot-shelx-ins.o .libs/libcoot-coords.lax/libcoot-shelx.a/lt4-atomic-numbers.o .libs/libcoot-coords.lax/lt12-gdk-keysyms.o .libs/libcoot-coords.lax/lt13-coot-utils.o .libs/libcoot-coords.lax/lt14-read-sbase.o .libs/libcoot-coords.lax/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-coords.lax/lt16-lt1-gdk-keysyms.o .libs/libcoot-coords.lax/lt17-lt4-coot-fasta.o .libs/libcoot-coords.lax/lt18-protein-geometry-mmdb.o .libs/libcoot-coords.lax/lt19-coot-h-bonds.o .libs/libcoot-coords.lax/lt20-atomic-numbers.o .libs/libcoot-coords.lax/lt21-coot-fasta.o .libs/libcoot-coords.lax/lt22-coot-rama.o .libs/libcoot-coords.lax/lt23-energy-lib.o .libs/libcoot-coords.lax/lt24-protein-geometry.o .libs/libcoot-coords.lax/lt25-coot-coord-utils.o .libs/libcoot-coords.lax/lt26-lt2-coot-utils.o .libs/libcoot-coords.lax/lt27-lbg-graph.o .libs/libcoot-coords.lax/lt28-lt3-atomic-numbers.o .libs/libcoot-coords.lax/lt29-gdk-keysyms.o .libs/libcoot-coords.lax/lt30-coot-utils.o .libs/libcoot-coords.lax/lt31-atomic-numbers.o .libs/libcoot-coords.lax/lt32-coot-fasta.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-coords.lax/libcoot-mini-mol.a/mini-mol-utils.o libtool: link: ranlib .libs/libcoot-coords.a libtool: link: rm -fr .libs/libcoot-coords.lax .libs/libcoot-coords.lax libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coords' Making all in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -g -O1 -g -O2 -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o >/dev/null 2>&1 mv -f .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O2 -Wl,-Bsymbolic-functions -o libcoot-AngleInfo.la libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: ar cru .libs/libcoot-AngleInfo.a .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: link: ranlib .libs/libcoot-AngleInfo.a libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/angles' Making all in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c -o dm-utils.lo dm-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -o dm-utils.o >/dev/null 2>&1 mv -f .deps/dm-utils.Tpo .deps/dm-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c -o graphical_skel.lo graphical_skel.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -o graphical_skel.o >/dev/null 2>&1 mv -f .deps/graphical_skel.Tpo .deps/graphical_skel.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../angles -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -g -O2 -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -o BuildCas.o >/dev/null 2>&1 mv -f .deps/BuildCas.Tpo .deps/BuildCas.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-skeleton.la dm-utils.lo graphical_skel.lo BuildCas.lo ../angles/libcoot-AngleInfo.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a && ar x "/build/buildd/coot-0.7pre1+svn3406/skeleton/../angles/.libs/libcoot-AngleInfo.a") libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3406/skeleton/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-skeleton.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3406/skeleton/../coords/.libs/libcoot-coords.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt1-gdk-keysyms.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt2-coot-utils.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-skeleton.lax/lt2-coot-utils.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt3-read-sbase.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-skeleton.lax/lt3-read-sbase.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt4-lt1-gdk-keysyms.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt4-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt6-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-skeleton.lax/lt6-atomic-numbers.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt8-lt4-lt1-gdk-keysyms.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt8-lt4-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt9-lt5-protein-geometry-mmdb.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt9-lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt10-energy-lib.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-skeleton.lax/lt10-energy-lib.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt11-protein-geometry.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-skeleton.lax/lt11-protein-geometry.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt6-atomic-numbers.o .libs/libcoot-skeleton.lax/lt12-lt6-atomic-numbers.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt6-atomic-numbers.o .libs/libcoot-skeleton.lax/lt12-lt6-atomic-numbers.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-skeleton.lax/lt13-lt2-coot-utils.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-skeleton.lax/lt13-lt2-coot-utils.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt14-lbg-graph.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-skeleton.lax/lt14-lbg-graph.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/lt15-lt7-coot-fasta.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/lt15-lt7-coot-fasta.o libtool: link: ln .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-read-sbase.o .libs/libcoot-skeleton.lax/lt16-lt3-read-sbase.o || cp .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-read-sbase.o .libs/libcoot-skeleton.lax/lt16-lt3-read-sbase.o libtool: link: ar cru .libs/libcoot-skeleton.a .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o .libs/libcoot-skeleton.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-skeleton.lax/lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt2-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt18-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/lt3-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/libcoot-coords.a/utils.o .libs/libcoot-skeleton.lax/lt4-lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt28-lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt16-lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt14-read-sbase.o .libs/libcoot-skeleton.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt13-coot-utils.o .libs/libcoot-skeleton.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt31-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-close.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-skeleton.lax/lt6-atomic-numbers.o .libs/libcoot-skeleton.lax/lt7-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt10-lt2-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-skeleton.lax/lt8-lt4-lt1-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt25-coot-coord-utils.o .libs/libcoot-skeleton.lax/lt9-lt5-protein-geometry-mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt5-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt22-coot-rama.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt11-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt12-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt27-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt19-coot-h-bonds.o .libs/libcoot-skeleton.lax/lt10-energy-lib.o .libs/libcoot-skeleton.lax/lt11-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt9-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt8-energy-lib.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt17-lt4-coot-fasta.o .libs/libcoot-skeleton.lax/lt12-lt6-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt26-lt2-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-skeleton.lax/lt13-lt2-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lig-build.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt29-gdk-keysyms.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-skeleton.lax/lt14-lbg-graph.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt4-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-skeleton.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-skeleton.lax/lt15-lt7-coot-fasta.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt20-atomic-numbers.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-skeleton.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt24-protein-geometry.o .libs/libcoot-skeleton.lax/libcoot-coords.a/lt32-coot-fasta.o .libs/libcoot-skeleton.lax/lt16-lt3-read-sbase.o libtool: link: ranlib .libs/libcoot-skeleton.a libtool: link: rm -fr .libs/libcoot-skeleton.lax .libs/libcoot-skeleton.lax libtool: link: ( cd ".libs" && rm -f "libcoot-skeleton.la" && ln -s "../libcoot-skeleton.la" "libcoot-skeleton.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' Making all in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c -o geomutil.lo geomutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -o geomutil.o >/dev/null 2>&1 mv -f .deps/geomutil.Tpo .deps/geomutil.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c -o mgtree.lo mgtree.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -o mgtree.o >/dev/null 2>&1 mv -f .deps/mgtree.Tpo .deps/mgtree.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c -o cartesian.lo cartesian.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -fPIC -DPIC -o .libs/matrix.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -o matrix.o >/dev/null 2>&1 mv -f .deps/matrix.Tpo .deps/matrix.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c -o quat.lo quat.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -fPIC -DPIC -o .libs/quat.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -o quat.o >/dev/null 2>&1 mv -f .deps/quat.Tpo .deps/quat.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O2 -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o >/dev/null 2>&1 mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libccp4mg-utils.la geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng libtool: link: ar cru .libs/libccp4mg-utils.a .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o libtool: link: ranlib .libs/libccp4mg-utils.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' Making all in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo Vectors.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o >/dev/null 2>&1 mv -f .deps/Vectors.Tpo .deps/Vectors.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o >/dev/null 2>&1 mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo density-contour-triangles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -fPIC -DPIC -o .libs/density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coords -I/usr/include/gpp4 -g -O2 -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -o density-contour-triangles.o >/dev/null 2>&1 mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-isosurface.la Vectors.lo CIsoSurface.lo density-contour-triangles.lo ../coords/libcoot-coords.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-isosurface.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3406/density-contour/../coords/.libs/libcoot-coords.a") libtool: link: ar cru .libs/libcoot-isosurface.a .libs/Vectors.o .libs/CIsoSurface.o .libs/density-contour-triangles.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-isosurface.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt18-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt1-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines_ext.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt28-lt3-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt16-lt1-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt14-read-sbase.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt13-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt31-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-close.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Cartesian.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-isosurface.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt10-lt2-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-lt1-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt25-coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt5-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt22-coot-rama.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt11-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt12-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt27-lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt19-coot-h-bonds.o .libs/libcoot-isosurface.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt9-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt8-energy-lib.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt17-lt4-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt6-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt26-lt2-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lig-build.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt29-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/coot-shelx-ins.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-extras.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt4-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/mmdb-crystal.o .libs/libcoot-isosurface.lax/libcoot-coords.a/Bond_lines.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt20-atomic-numbers.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lbg-molfile.o .libs/libcoot-isosurface.lax/libcoot-coords.a/cos-sin.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt24-protein-geometry.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt32-coot-fasta.o .libs/libcoot-isosurface.lax/libcoot-coords.a/lt3-read-sbase.o libtool: link: ranlib .libs/libcoot-isosurface.a libtool: link: rm -fr .libs/libcoot-isosurface.lax libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' Making all in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o >/dev/null 2>&1 mv -f .deps/db-strands.Tpo .deps/db-strands.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-db-main.la db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/db-main/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/db-main/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-db-main.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/db-main/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt2-gdk-keysyms.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/lt2-gdk-keysyms.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt3-coot-utils.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-db-main.lax/lt3-coot-utils.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt4-atomic-numbers.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-db-main.lax/lt4-atomic-numbers.o libtool: link: ln .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt5-coot-fasta.o || cp .libs/libcoot-db-main.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-db-main.lax/lt5-coot-fasta.o libtool: link: ar cru .libs/libcoot-db-main.a .libs/db-main.o .libs/db-strands.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-db-main.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-db-main.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o 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-s "../libcoot-db-main.la" "libcoot-db-main.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT testdbmain.o -MD -MP -MF .deps/testdbmain.Tpo -c -o testdbmain.o testdbmain.cc mv -f .deps/testdbmain.Tpo .deps/testdbmain.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o testdbmain testdbmain.o ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../utils -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -MT train-pepflip.o -MD -MP -MF .deps/train-pepflip.Tpo -c -o train-pepflip.o train-pepflip.cc mv -f .deps/train-pepflip.Tpo .deps/train-pepflip.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -g -O2 -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -g -O2 -Wl,-Bsymbolic-functions -o train-pepflip train-pepflip.o ./.libs/libcoot-db-main.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/db-main' Making all in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ideal' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c -o simple-restraint.lo simple-restraint.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" 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-lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ideal/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ideal/../coot-utils/.libs/libcoot-coord-extras.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ideal/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ideal/../utils/.libs/libcoot-utils.a") libtool: link: (cd .libs/libcoot-ideal.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ideal/../mini-mol/.libs/libcoot-mini-mol.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt1-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt2-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ideal.lax/lt2-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt3-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ideal.lax/lt3-read-sbase.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/lt4-lt1-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/lt4-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt6-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt6-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt8-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ideal.lax/lt8-energy-lib.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt9-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ideal.lax/lt9-protein-geometry.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt10-lt2-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt10-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt11-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ideal.lax/lt11-lbg-graph.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt12-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt12-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt13-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt13-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt14-read-sbase.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ideal.lax/lt14-read-sbase.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt15-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt15-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/lt16-lt1-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/lt16-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-ideal.lax/lt17-lt4-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-ideal.lax/lt17-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt18-protein-geometry-mmdb.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt18-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt19-coot-h-bonds.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt19-coot-h-bonds.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt20-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt20-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt22-coot-rama.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ideal.lax/lt22-coot-rama.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt23-energy-lib.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ideal.lax/lt23-energy-lib.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt24-protein-geometry.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ideal.lax/lt24-protein-geometry.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt26-lt2-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt26-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt27-lbg-graph.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ideal.lax/lt27-lbg-graph.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-ideal.lax/lt28-lt3-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-ideal.lax/lt28-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt29-gdk-keysyms.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ideal.lax/lt29-gdk-keysyms.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ideal.lax/lt30-coot-utils.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt31-atomic-numbers.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ideal.lax/lt31-atomic-numbers.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt32-coot-fasta.o || cp .libs/libcoot-ideal.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ideal.lax/lt32-coot-fasta.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt33-mini-mol.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ideal.lax/lt33-mini-mol.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt34-atom-quads.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ideal.lax/lt34-atom-quads.o libtool: link: ln .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o || cp .libs/libcoot-ideal.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o libtool: link: ar cru .libs/libcoot-ideal.a .libs/simple-restraint.o .libs/extra-restraints.o .libs/pepflip.o .libs/regularize-minimol.o .libs/lograma.o .libs/libcoot-ideal.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ideal.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ideal.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ideal.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ideal.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ideal.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ideal.lax/lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ideal.lax/lt2-coot-utils.o .libs/libcoot-ideal.lax/lt3-read-sbase.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt4-lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ideal.lax/lt5-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ideal.lax/lt6-atomic-numbers.o .libs/libcoot-ideal.lax/lt7-coot-fasta.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt5-coot-fasta.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ideal.lax/lt8-energy-lib.o .libs/libcoot-ideal.lax/lt9-protein-geometry.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ideal.lax/lt10-lt2-coot-utils.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ideal.lax/lt11-lbg-graph.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt3-atomic-numbers.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ideal.lax/libcoot-coord-extras.a/lt4-atomic-numbers.o .libs/libcoot-ideal.lax/lt12-gdk-keysyms.o .libs/libcoot-ideal.lax/lt13-coot-utils.o .libs/libcoot-ideal.lax/lt14-read-sbase.o .libs/libcoot-ideal.lax/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-ideal.lax/lt16-lt1-gdk-keysyms.o .libs/libcoot-ideal.lax/lt17-lt4-coot-fasta.o .libs/libcoot-ideal.lax/lt18-protein-geometry-mmdb.o .libs/libcoot-ideal.lax/lt19-coot-h-bonds.o .libs/libcoot-ideal.lax/lt20-atomic-numbers.o .libs/libcoot-ideal.lax/lt21-coot-fasta.o .libs/libcoot-ideal.lax/lt22-coot-rama.o .libs/libcoot-ideal.lax/lt23-energy-lib.o .libs/libcoot-ideal.lax/lt24-protein-geometry.o .libs/libcoot-ideal.lax/lt25-coot-coord-utils.o .libs/libcoot-ideal.lax/lt26-lt2-coot-utils.o .libs/libcoot-ideal.lax/lt27-lbg-graph.o .libs/libcoot-ideal.lax/lt28-lt3-atomic-numbers.o .libs/libcoot-ideal.lax/lt29-gdk-keysyms.o .libs/libcoot-ideal.lax/lt30-coot-utils.o .libs/libcoot-ideal.lax/lt31-atomic-numbers.o .libs/libcoot-ideal.lax/lt32-coot-fasta.o .libs/libcoot-ideal.lax/lt33-mini-mol.o .libs/libcoot-ideal.lax/lt34-atom-quads.o .libs/libcoot-ideal.lax/lt35-mini-mol-utils.o libtool: link: ranlib .libs/libcoot-ideal.a libtool: link: rm -fr .libs/libcoot-ideal.lax .libs/libcoot-ideal.lax libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT with-geometry.o -MD -MP -MF .deps/with-geometry.Tpo -c -o with-geometry.o with-geometry.cc mv -f .deps/with-geometry.Tpo .deps/with-geometry.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o with-geometry with-geometry.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o with-geometry with-geometry.o -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT with-map.o -MD -MP -MF .deps/with-map.Tpo -c -o with-map.o with-map.cc mv -f .deps/with-map.Tpo .deps/with-map.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o with-map with-map.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la ../mini-mol/libcoot-mini-mol.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o with-map with-map.o -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a ../mini-mol/.libs/libcoot-mini-mol.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../utils -I../lidia-core -I../coot-utils -I../mini-mol -I../geometry -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -MT logramatest.o -MD -MP -MF .deps/logramatest.Tpo -c -o logramatest.o logramatest.cpp mv -f .deps/logramatest.Tpo .deps/logramatest.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -L/usr/lib -lgsl -lgslcblas -lm -L/usr/lib -L/usr -lmmdb -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -Wl,-Bsymbolic-functions -o logramatest logramatest.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O2 -Wl,-Bsymbolic-functions -o logramatest logramatest.o -L/usr/lib -L/usr ./.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -lmmdb /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lgsl -lgslcblas -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ideal' Making all in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ligand' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c -o ligand.lo 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-DPIC -o .libs/richardson-rotamers.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamers.lo -MD -MP -MF .deps/richardson-rotamers.Tpo -c richardson-rotamers.cc -o richardson-rotamers.o >/dev/null 2>&1 mv -f .deps/richardson-rotamers.Tpo 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c richardson-rotamer.cc -fPIC -DPIC -o .libs/richardson-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT richardson-rotamer.lo -MD -MP -MF .deps/richardson-rotamer.Tpo -c richardson-rotamer.cc -o richardson-rotamer.o >/dev/null 2>&1 mv -f .deps/richardson-rotamer.Tpo .deps/richardson-rotamer.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT rotamer.lo -MD -MP -MF .deps/rotamer.Tpo -c -o rotamer.lo rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" 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-I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c -o backrub-rotamer.lo backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -fPIC -DPIC -o .libs/backrub-rotamer.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -o backrub-rotamer.o >/dev/null 2>&1 mv -f .deps/backrub-rotamer.Tpo .deps/backrub-rotamer.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-ligand.la ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo ../ideal/libcoot-ideal.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-ideal.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../ideal/.libs/libcoot-ideal.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-db-main.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../db-main/.libs/libcoot-db-main.a") libtool: link: (cd .libs/libcoot-ligand.lax/libccp4mg-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../ccp4mg-utils/.libs/libccp4mg-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-geometry.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../geometry/.libs/libcoot-geometry.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coords.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../coords/.libs/libcoot-coords.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-extras.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../coot-utils/.libs/libcoot-coord-extras.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-map-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../coot-utils/.libs/libcoot-map-utils.a") libtool: link: (cd .libs/libcoot-ligand.lax/libcoot-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/ligand/../utils/.libs/libcoot-utils.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt1-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol.o .libs/libcoot-ligand.lax/lt1-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt3-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt3-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt4-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-utils.o .libs/libcoot-ligand.lax/lt4-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt5-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/read-sbase.o .libs/libcoot-ligand.lax/lt5-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt6-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt6-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt7-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt7-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt8-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt8-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt9-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atom-quads.o .libs/libcoot-ligand.lax/lt9-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt10-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt10-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt11-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt11-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt12-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt12-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt13-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt13-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt14-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-fasta.o .libs/libcoot-ligand.lax/lt14-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt15-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-rama.o .libs/libcoot-ligand.lax/lt15-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt16-lt5-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt16-lt5-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt17-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/energy-lib.o .libs/libcoot-ligand.lax/lt17-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt18-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/protein-geometry.o .libs/libcoot-ligand.lax/lt18-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt19-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt19-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt20-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt20-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt21-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt21-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt22-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt22-lt2-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt23-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lbg-graph.o .libs/libcoot-ligand.lax/lt23-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt24-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt24-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt25-lt4-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-db-main.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt25-lt4-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt26-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt26-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt27-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-utils.o .libs/libcoot-ligand.lax/lt27-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt28-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/read-sbase.o .libs/libcoot-ligand.lax/lt28-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt29-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt29-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt30-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt30-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt31-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/coot-fasta.o .libs/libcoot-ligand.lax/lt31-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt32-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/energy-lib.o .libs/libcoot-ligand.lax/lt32-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt33-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/protein-geometry.o .libs/libcoot-ligand.lax/lt33-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt34-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-geometry.a/lbg-graph.o .libs/libcoot-ligand.lax/lt34-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt35-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-ligand.lax/lt35-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-ligand.lax/lt36-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt37-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt37-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt38-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol.o .libs/libcoot-ligand.lax/lt38-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt39-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt39-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt40-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-utils.o .libs/libcoot-ligand.lax/lt40-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt41-lt18-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt18-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt41-lt18-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt42-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/read-sbase.o .libs/libcoot-ligand.lax/lt42-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt43-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt43-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt44-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt44-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt45-lt28-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt28-lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt45-lt28-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt46-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt46-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt47-lt16-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt16-lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt47-lt16-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-read-sbase.o .libs/libcoot-ligand.lax/lt48-lt14-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt14-read-sbase.o .libs/libcoot-ligand.lax/lt48-lt14-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt49-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atom-quads.o .libs/libcoot-ligand.lax/lt49-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-coot-utils.o .libs/libcoot-ligand.lax/lt50-lt13-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt13-coot-utils.o .libs/libcoot-ligand.lax/lt50-lt13-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt51-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt51-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt52-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt52-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt31-atomic-numbers.o .libs/libcoot-ligand.lax/lt53-lt31-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt31-atomic-numbers.o .libs/libcoot-ligand.lax/lt53-lt31-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt54-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt54-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt55-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt55-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt56-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-fasta.o .libs/libcoot-ligand.lax/lt56-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt57-lt10-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt10-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt57-lt10-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt58-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-rama.o .libs/libcoot-ligand.lax/lt58-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt59-lt4-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt59-lt4-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-coord-utils.o .libs/libcoot-ligand.lax/lt60-lt25-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt25-coot-coord-utils.o .libs/libcoot-ligand.lax/lt60-lt25-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt61-lt5-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt61-lt5-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt62-lt5-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt62-lt5-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-coot-rama.o .libs/libcoot-ligand.lax/lt63-lt22-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt22-coot-rama.o .libs/libcoot-ligand.lax/lt63-lt22-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-lbg-graph.o .libs/libcoot-ligand.lax/lt64-lt11-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt11-lbg-graph.o .libs/libcoot-ligand.lax/lt64-lt11-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/lt65-lt23-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/lt65-lt23-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-gdk-keysyms.o .libs/libcoot-ligand.lax/lt66-lt12-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt12-gdk-keysyms.o .libs/libcoot-ligand.lax/lt66-lt12-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-lbg-graph.o .libs/libcoot-ligand.lax/lt67-lt27-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt27-lbg-graph.o .libs/libcoot-ligand.lax/lt67-lt27-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-coot-h-bonds.o .libs/libcoot-ligand.lax/lt68-lt19-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt19-coot-h-bonds.o .libs/libcoot-ligand.lax/lt68-lt19-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt69-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/energy-lib.o .libs/libcoot-ligand.lax/lt69-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt70-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/protein-geometry.o .libs/libcoot-ligand.lax/lt70-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt71-lt21-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/lt71-lt21-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-protein-geometry.o .libs/libcoot-ligand.lax/lt72-lt9-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt9-protein-geometry.o .libs/libcoot-ligand.lax/lt72-lt9-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt73-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt73-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-energy-lib.o .libs/libcoot-ligand.lax/lt74-lt8-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt8-energy-lib.o .libs/libcoot-ligand.lax/lt74-lt8-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt75-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt75-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt76-lt17-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt17-lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt76-lt17-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-atomic-numbers.o .libs/libcoot-ligand.lax/lt77-lt6-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt6-atomic-numbers.o .libs/libcoot-ligand.lax/lt77-lt6-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt78-lt26-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt26-lt2-coot-utils.o .libs/libcoot-ligand.lax/lt78-lt26-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt79-lt15-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt15-coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt79-lt15-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt80-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt80-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-gdk-keysyms.o .libs/libcoot-ligand.lax/lt81-lt29-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt29-gdk-keysyms.o .libs/libcoot-ligand.lax/lt81-lt29-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt82-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt82-lt2-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt83-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lbg-graph.o .libs/libcoot-ligand.lax/lt83-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt84-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt84-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt85-lt4-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt85-lt4-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-ligand.lax/lt86-lt7-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt7-coot-fasta.o .libs/libcoot-ligand.lax/lt86-lt7-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-atomic-numbers.o .libs/libcoot-ligand.lax/lt87-lt20-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt20-atomic-numbers.o .libs/libcoot-ligand.lax/lt87-lt20-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt88-lt30-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt30-coot-utils.o .libs/libcoot-ligand.lax/lt88-lt30-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-protein-geometry.o .libs/libcoot-ligand.lax/lt89-lt24-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt24-protein-geometry.o .libs/libcoot-ligand.lax/lt89-lt24-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt32-coot-fasta.o .libs/libcoot-ligand.lax/lt90-lt32-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt32-coot-fasta.o .libs/libcoot-ligand.lax/lt90-lt32-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-read-sbase.o .libs/libcoot-ligand.lax/lt91-lt3-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coords.a/lt3-read-sbase.o .libs/libcoot-ligand.lax/lt91-lt3-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt92-mini-mol.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol.o .libs/libcoot-ligand.lax/lt92-mini-mol.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt93-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt93-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt94-coot-coord-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-extras.o .libs/libcoot-ligand.lax/lt94-coot-coord-extras.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt95-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-utils.o .libs/libcoot-ligand.lax/lt95-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt96-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/read-sbase.o .libs/libcoot-ligand.lax/lt96-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt97-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt97-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt98-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt98-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt99-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt99-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt100-atom-quads.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atom-quads.o .libs/libcoot-ligand.lax/lt100-atom-quads.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt101-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt101-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt102-lt3-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-coot-utils.o .libs/libcoot-ligand.lax/lt102-lt3-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt103-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt103-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt104-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt104-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt105-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-fasta.o .libs/libcoot-ligand.lax/lt105-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt106-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-rama.o .libs/libcoot-ligand.lax/lt106-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt107-lsq-improve.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lsq-improve.o .libs/libcoot-ligand.lax/lt107-lsq-improve.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt108-lt5-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/lt108-lt5-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt109-water-coordination.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/water-coordination.o .libs/libcoot-ligand.lax/lt109-water-coordination.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt110-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/energy-lib.o .libs/libcoot-ligand.lax/lt110-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt111-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/protein-geometry.o .libs/libcoot-ligand.lax/lt111-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt112-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt112-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt113-mini-mol-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/mini-mol-utils.o .libs/libcoot-ligand.lax/lt113-mini-mol-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt114-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt114-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt115-lt2-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt2-gdk-keysyms.o .libs/libcoot-ligand.lax/lt115-lt2-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt116-coot-coord-lsq.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-coord-lsq.o .libs/libcoot-ligand.lax/lt116-coot-coord-lsq.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt117-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lbg-graph.o .libs/libcoot-ligand.lax/lt117-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt118-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt118-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt119-coot-tree-extras.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/coot-tree-extras.o .libs/libcoot-ligand.lax/lt119-coot-tree-extras.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt120-lt4-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-extras.a/lt4-atomic-numbers.o .libs/libcoot-ligand.lax/lt120-lt4-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt121-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt121-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt122-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt122-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt123-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt123-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt124-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt124-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt125-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt125-lt1-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt126-lt4-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-ligand.lax/lt126-lt4-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt127-protein-geometry-mmdb.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-ligand.lax/lt127-protein-geometry-mmdb.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt128-coot-h-bonds.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-ligand.lax/lt128-coot-h-bonds.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt129-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt129-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt130-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt130-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt131-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt131-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt132-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt132-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt133-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt133-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt134-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt134-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt135-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt135-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt136-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt136-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt137-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt137-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt138-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt138-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt139-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt139-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt140-read-sbase.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/read-sbase.o .libs/libcoot-ligand.lax/lt140-read-sbase.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt141-coot-coord-utils-nucleotides.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/lt141-coot-coord-utils-nucleotides.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt142-lt1-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/lt142-lt1-gdk-keysyms.o libtool: link: 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.libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt147-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt147-coot-fasta.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt148-coot-rama.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-rama.o .libs/libcoot-ligand.lax/lt148-coot-rama.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt149-energy-lib.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/energy-lib.o .libs/libcoot-ligand.lax/lt149-energy-lib.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt150-protein-geometry.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/protein-geometry.o .libs/libcoot-ligand.lax/lt150-protein-geometry.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt151-coot-coord-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/coot-coord-utils.o .libs/libcoot-ligand.lax/lt151-coot-coord-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt152-lt2-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt2-coot-utils.o .libs/libcoot-ligand.lax/lt152-lt2-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt153-lbg-graph.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lbg-graph.o .libs/libcoot-ligand.lax/lt153-lbg-graph.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt154-lt3-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-map-utils.a/lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt154-lt3-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt155-gdk-keysyms.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/gdk-keysyms.o .libs/libcoot-ligand.lax/lt155-gdk-keysyms.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt156-coot-utils.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-utils.o .libs/libcoot-ligand.lax/lt156-coot-utils.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt157-atomic-numbers.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/atomic-numbers.o .libs/libcoot-ligand.lax/lt157-atomic-numbers.o libtool: link: ln .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o || cp .libs/libcoot-ligand.lax/libcoot-utils.a/coot-fasta.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o libtool: link: ar cru .libs/libcoot-ligand.a .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/fast-ss-search.o .libs/rigid-body.o .libs/ideal-rna.o .libs/richardson-rotamers.o .libs/richardson-rotamer.o .libs/rotamer.o .libs/torsion-general.o .libs/rotamer-tables.o .libs/primitive-chi-angles.o .libs/dipole.o .libs/base-pairing.o .libs/backrub-rotamer.o .libs/libcoot-ligand.lax/libcoot-ideal.a/mini-mol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-extras.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt18-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-ideal.a/read-sbase.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-utils-nucleotides.o .libs/libcoot-ligand.lax/libcoot-ideal.a/regularize-minimol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt1-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt28-lt3-atomic-numbers.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt4-coot-fasta.o 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.libs/libcoot-ligand.lax/libcoot-ideal.a/lt25-coot-coord-utils.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt5-protein-geometry-mmdb.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt5-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt22-coot-rama.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt11-lbg-graph.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt23-energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt12-gdk-keysyms.o .libs/libcoot-ligand.lax/libcoot-ideal.a/water-coordination.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt27-lbg-graph.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt19-coot-h-bonds.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt33-mini-mol.o .libs/libcoot-ligand.lax/libcoot-ideal.a/energy-lib.o .libs/libcoot-ligand.lax/libcoot-ideal.a/protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt21-coot-fasta.o .libs/libcoot-ligand.lax/libcoot-ideal.a/lt9-protein-geometry.o .libs/libcoot-ligand.lax/libcoot-ideal.a/coot-coord-utils.o 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.libs/libcoot-ligand.lax/libcoot-map-utils.a/peak-search.o .libs/libcoot-ligand.lax/lt149-energy-lib.o .libs/libcoot-ligand.lax/lt150-protein-geometry.o .libs/libcoot-ligand.lax/lt151-coot-coord-utils.o .libs/libcoot-ligand.lax/lt152-lt2-coot-utils.o .libs/libcoot-ligand.lax/libcoot-map-utils.a/trim.o .libs/libcoot-ligand.lax/lt153-lbg-graph.o .libs/libcoot-ligand.lax/lt154-lt3-atomic-numbers.o .libs/libcoot-ligand.lax/lt155-gdk-keysyms.o .libs/libcoot-ligand.lax/lt156-coot-utils.o .libs/libcoot-ligand.lax/lt157-atomic-numbers.o .libs/libcoot-ligand.lax/lt158-coot-fasta.o libtool: link: ranlib .libs/libcoot-ligand.a libtool: link: rm -fr .libs/libcoot-ligand.lax .libs/libcoot-ligand.lax libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o findligand-real find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o findligand-real find-ligand.o ./.libs/libcoot-ligand.a -L/usr/lib -L/usr ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../db-main/.libs/libcoot-db-main.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-shelx.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../lidia-core -I../utils -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc mv -f .deps/find-waters.Tpo .deps/find-waters.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o findwaters-real find-waters.o ./.libs/libcoot-ligand.a -L/usr/lib -L/usr ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../db-main/.libs/libcoot-db-main.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-shelx.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ligand' Making all in high-res make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/high-res' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c -o high-res.lo high-res.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" 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-I/usr/include -g -O2 -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c -o residue-distortions.lo residue-distortions.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -fPIC -DPIC -o 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--mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../utils -I../coot-utils -I../lidia-core -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include/gpp4 -DHAVE_GSL -I/usr/include -g -O2 -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -o sequence-assignment.o >/dev/null 2>&1 mv -f .deps/sequence-assignment.Tpo .deps/sequence-assignment.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/usr/include -g -O2 -Wl,-Bsymbolic-functions -o libcoot-high-res.la high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-mini-mol.a && ar x "/build/buildd/coot-0.7pre1+svn3406/high-res/../mini-mol/.libs/libcoot-mini-mol.a") libtool: link: (cd .libs/libcoot-high-res.lax/libcoot-ligand.a && ar x "/build/buildd/coot-0.7pre1+svn3406/high-res/../ligand/.libs/libcoot-ligand.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt1-mini-mol.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol.o .libs/libcoot-high-res.lax/lt1-mini-mol.o libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt2-atom-quads.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/atom-quads.o .libs/libcoot-high-res.lax/lt2-atom-quads.o libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt3-mini-mol-utils.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/mini-mol-utils.o .libs/libcoot-high-res.lax/lt3-mini-mol-utils.o libtool: link: ln .libs/libcoot-high-res.lax/libcoot-ligand.a/lt1-mini-mol.o .libs/libcoot-high-res.lax/lt4-lt1-mini-mol.o || cp .libs/libcoot-high-res.lax/libcoot-ligand.a/lt1-mini-mol.o .libs/libcoot-high-res.lax/lt4-lt1-mini-mol.o libtool: link: ar cru .libs/libcoot-high-res.a .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/atom-quads.o .libs/libcoot-high-res.lax/libcoot-mini-mol.a/mini-mol-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt158-coot-fasta.o .libs/libcoot-high-res.lax/lt1-mini-mol.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt108-lt5-coot-fasta.o .libs/libcoot-high-res.lax/libcoot-ligand.a/gdk-keysyms.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt13-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt123-read-sbase.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-coord-extras.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt154-lt3-atomic-numbers.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt52-lt3-coot-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt119-coot-tree-extras.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt18-protein-geometry-mmdb.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt151-coot-coord-utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/read-sbase.o .libs/libcoot-high-res.lax/libcoot-ligand.a/residue_by_phi_psi.o .libs/libcoot-high-res.lax/libcoot-ligand.a/coot-coord-utils-nucleotides.o .libs/libcoot-high-res.lax/libcoot-ligand.a/utils.o .libs/libcoot-high-res.lax/libcoot-ligand.a/lt63-lt22-coot-rama.o 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ln -s "../libcoot-high-res.la" "libcoot-high-res.la" ) make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/high-res' Making all in build make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/build' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c -o CalphaBuild.lo CalphaBuild.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c CalphaBuild.cc -fPIC -DPIC -o .libs/CalphaBuild.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c CalphaBuild.cc -o CalphaBuild.o >/dev/null 2>&1 mv -f .deps/CalphaBuild.Tpo .deps/CalphaBuild.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-cabuild.la CalphaBuild.lo ../angles/libcoot-AngleInfo.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: (cd .libs/libcoot-cabuild.lax/libcoot-AngleInfo.a && ar x "/build/buildd/coot-0.7pre1+svn3406/build/../angles/.libs/libcoot-AngleInfo.a") libtool: link: ar cru .libs/libcoot-cabuild.a .libs/CalphaBuild.o .libs/libcoot-cabuild.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot-cabuild.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o .libs/libcoot-cabuild.lax/libcoot-AngleInfo.a/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libtool: link: ranlib .libs/libcoot-cabuild.a libtool: link: rm -fr .libs/libcoot-cabuild.lax libtool: link: ( cd ".libs" && rm -f "libcoot-cabuild.la" && ln -s "../libcoot-cabuild.la" "libcoot-cabuild.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../angles -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT testcabuild.o -MD -MP -MF .deps/testcabuild.Tpo -c -o testcabuild.o testcabuild.cc mv -f .deps/testcabuild.Tpo .deps/testcabuild.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o testcabuild testcabuild.o ./libcoot-cabuild.la ../angles/libcoot-AngleInfo.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o testcabuild testcabuild.o ./.libs/libcoot-cabuild.a -L/usr/lib -L/usr ../angles/.libs/libcoot-AngleInfo.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/build' Making all in greg-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' Making all in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' Making all in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/analysis' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c bfkurt.cc -o bfkurt.o >/dev/null 2>&1 mv -f .deps/bfkurt.Tpo .deps/bfkurt.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcoot-analysis.la bfkurt.lo ../coot-utils/libcoot-coord-utils.la -L/usr/lib -L/usr -lmmdb -lm libtool: link: (cd .libs/libcoot-analysis.lax/libcoot-coord-utils.a && ar x "/build/buildd/coot-0.7pre1+svn3406/analysis/../coot-utils/.libs/libcoot-coord-utils.a") libtool: link: ar cru .libs/libcoot-analysis.a .libs/bfkurt.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/gdk-keysyms.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-utils.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/read-sbase.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-coord-utils-nucleotides.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/lt1-gdk-keysyms.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/lt4-coot-fasta.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/protein-geometry-mmdb.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-h-bonds.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/atomic-numbers.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-fasta.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-rama.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/energy-lib.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/protein-geometry.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/coot-coord-utils.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/lt2-coot-utils.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/lbg-graph.o .libs/libcoot-analysis.lax/libcoot-coord-utils.a/lt3-atomic-numbers.o libtool: link: ranlib .libs/libcoot-analysis.a libtool: link: rm -fr .libs/libcoot-analysis.lax libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o bfactan.cc mv -f .deps/bfactan.Tpo .deps/bfactan.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o bfactan bfactan.o ./.libs/libcoot-analysis.a -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/analysis' Making all in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/tw' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -fPIC -DPIC -o .libs/tw.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o >/dev/null 2>&1 mv -f .deps/tw.Tpo .deps/tw.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-tw.la tw.lo libtool: link: ar cru .libs/libcoot-tw.a .libs/tw.o libtool: link: ranlib .libs/libcoot-tw.a libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT tiddly.o -MD -MP -MF .deps/tiddly.Tpo -c -o tiddly.o tiddly.cc mv -f .deps/tiddly.Tpo .deps/tiddly.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o libcoot-tw.la -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o coot-tiddly tiddly.o -pthread ./.libs/libcoot-tw.a /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libgio-2.0.so /usr/lib/libpangoft2-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm /usr/lib/libpangocairo-1.0.so /usr/lib/libcairo.so /usr/lib/libpango-1.0.so /usr/lib/libfreetype.so -lfontconfig /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so /usr/lib/libgthread-2.0.so -lrt /usr/lib/libglib-2.0.so -pthread make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/tw' Making all in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lbg' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c -o lbg.lo lbg.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc -fPIC -DPIC -o .libs/lbg.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc -o lbg.o >/dev/null 2>&1 mv -f .deps/lbg.Tpo .deps/lbg.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo wmolecule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -fPIC -DPIC -o .libs/wmolecule.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -o wmolecule.o >/dev/null 2>&1 mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo lbg-search.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -fPIC -DPIC -o .libs/lbg-search.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -o lbg-search.o >/dev/null 2>&1 mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c -o residue-circles.lo residue-circles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -fPIC -DPIC -o .libs/residue-circles.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -o residue-circles.o >/dev/null 2>&1 mv -f .deps/residue-circles.Tpo .deps/residue-circles.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c -o rdkit-interface.lo rdkit-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -fPIC -DPIC -o .libs/rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -o rdkit-interface.o >/dev/null 2>&1 mv -f .deps/rdkit-interface.Tpo .deps/rdkit-interface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c -o flev-annotations.lo flev-annotations.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -fPIC -DPIC -o .libs/flev-annotations.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -o flev-annotations.o >/dev/null 2>&1 mv -f .deps/flev-annotations.Tpo .deps/flev-annotations.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o libcoot-lidia.la lbg.lo wmolecule.lo lbg-search.lo residue-circles.lo rdkit-interface.lo flev-annotations.lo libtool: link: ar cru .libs/libcoot-lidia.a .libs/lbg.o .libs/wmolecule.o .libs/lbg-search.o .libs/residue-circles.o .libs/rdkit-interface.o .libs/flev-annotations.o libtool: link: ranlib .libs/libcoot-lidia.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o lidia-main.cc mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../lidia-core -I../coot-utils -I../geometry -I../coot-utils -I../utils -I/usr/include -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/usr/share/coot"' -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -g -O2 -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o ./libcoot-lidia.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm -lgoocanvas -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -g -O2 -Wl,-Bsymbolic-functions -o lidia lidia-main.o lbg-callbacks-outer.o -pthread ./.libs/libcoot-lidia.a ../coot-utils/.libs/libcoot-coord-utils.a -L/usr/lib -L/usr ../geometry/.libs/libcoot-geometry.a ../lidia-core/.libs/libcoot-lidia-core.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lgoocanvas /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libgio-2.0.so /usr/lib/libpangoft2-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm /usr/lib/libpangocairo-1.0.so /usr/lib/libcairo.so /usr/lib/libpango-1.0.so /usr/lib/libfreetype.so -lfontconfig /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so /usr/lib/libgthread-2.0.so -lrt /usr/lib/libglib-2.0.so -pthread make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lbg' Making all in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c -o buccaneer-lib.lo buccaneer-lib.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -fPIC -DPIC -o .libs/buccaneer-lib.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -o buccaneer-lib.o >/dev/null 2>&1 mv -f .deps/buccaneer-lib.Tpo .deps/buccaneer-lib.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c -o buccaneer-prot.lo buccaneer-prot.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -fPIC -DPIC -o .libs/buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -o buccaneer-prot.o >/dev/null 2>&1 mv -f .deps/buccaneer-prot.Tpo .deps/buccaneer-prot.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c -o buccaneer-sequence.lo buccaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -fPIC -DPIC -o .libs/buccaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -o buccaneer-sequence.o >/dev/null 2>&1 mv -f .deps/buccaneer-sequence.Tpo .deps/buccaneer-sequence.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -fPIC -DPIC -o .libs/cootaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" "-DPACKAGE_STRING=\"coot 0.7-pre-1\"" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -o cootaneer-sequence.o >/dev/null 2>&1 mv -f .deps/cootaneer-sequence.Tpo .deps/cootaneer-sequence.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o libcootaneer.la buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcootaneer.a .libs/buccaneer-lib.o .libs/buccaneer-prot.o .libs/buccaneer-sequence.o .libs/cootaneer-sequence.o libtool: link: ranlib .libs/libcootaneer.a libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gpp4 -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O2 -MT cootaneer-demo.o -MD -MP -MF .deps/cootaneer-demo.Tpo -c -o cootaneer-demo.o cootaneer-demo.cpp mv -f .deps/cootaneer-demo.Tpo .deps/cootaneer-demo.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o ./libcootaneer.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -g -O2 -Wl,-Bsymbolic-functions -o cootaneer-demo cootaneer-demo.o ./.libs/libcootaneer.a -L/usr/lib -L/usr -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' Making all in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc mv -f .deps/main.Tpo .deps/main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT svn-revision.o -MD -MP -MF .deps/svn-revision.Tpo -c -o svn-revision.o svn-revision.cc mv -f .deps/svn-revision.Tpo .deps/svn-revision.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT c-inner-main.o -MD -MP -MF .deps/c-inner-main.Tpo -c -o c-inner-main.o c-inner-main.c mv -f .deps/c-inner-main.Tpo .deps/c-inner-main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build.o -MD -MP -MF .deps/c-interface-build.Tpo -c -o c-interface-build.o c-interface-build.cc mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-build-gui.o -MD -MP -MF .deps/c-interface-build-gui.Tpo -c -o c-interface-build-gui.o c-interface-build-gui.cc mv -f .deps/c-interface-build-gui.Tpo .deps/c-interface-build-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-database.o -MD -MP -MF .deps/c-interface-database.Tpo -c -o c-interface-database.o c-interface-database.cc mv -f .deps/c-interface-database.Tpo .deps/c-interface-database.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-pisa.o -MD -MP -MF .deps/c-interface-pisa.Tpo -c -o c-interface-pisa.o c-interface-pisa.cc mv -f .deps/c-interface-pisa.Tpo .deps/c-interface-pisa.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" 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-I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-gtk2.o -MD -MP -MF .deps/c-interface-gtk2.Tpo -c -o c-interface-gtk2.o c-interface-gtk2.cc mv -f .deps/c-interface-gtk2.Tpo .deps/c-interface-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" 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-I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o c-interface-ligands.cc mv -f .deps/c-interface-ligands.Tpo .deps/c-interface-ligands.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o c-interface-ligands-gui.cc mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o c-interface-mmdb.cc mv -f .deps/c-interface-mmdb.Tpo .deps/c-interface-mmdb.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-mutate.o -MD -MP -MF .deps/c-interface-mutate.Tpo -c -o c-interface-mutate.o c-interface-mutate.cc mv -f .deps/c-interface-mutate.Tpo .deps/c-interface-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-ncs.o -MD -MP -MF .deps/c-interface-ncs.Tpo -c -o c-interface-ncs.o c-interface-ncs.cc mv -f .deps/c-interface-ncs.Tpo .deps/c-interface-ncs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-network.o -MD -MP -MF .deps/c-interface-network.Tpo -c -o c-interface-network.o c-interface-network.cc mv -f .deps/c-interface-network.Tpo .deps/c-interface-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-nucleotides.o -MD -MP -MF .deps/c-interface-nucleotides.Tpo -c -o c-interface-nucleotides.o c-interface-nucleotides.cc mv -f .deps/c-interface-nucleotides.Tpo .deps/c-interface-nucleotides.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-python.o -MD -MP -MF .deps/c-interface-python.Tpo -c -o c-interface-python.o c-interface-python.cc mv -f .deps/c-interface-python.Tpo .deps/c-interface-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-preferences.o -MD -MP -MF .deps/c-interface-preferences.Tpo -c -o c-interface-preferences.o c-interface-preferences.cc mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-refine.o -MD -MP -MF .deps/c-interface-refine.Tpo -c -o c-interface-refine.o c-interface-refine.cc mv -f .deps/c-interface-refine.Tpo .deps/c-interface-refine.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o c-interface-scm.cc mv -f .deps/c-interface-scm.Tpo .deps/c-interface-scm.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-superpose.o -MD -MP -MF .deps/c-interface-superpose.Tpo -c -o c-interface-superpose.o c-interface-superpose.cc mv -f .deps/c-interface-superpose.Tpo .deps/c-interface-superpose.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-validate.o -MD -MP -MF .deps/c-interface-validate.Tpo -c -o c-interface-validate.o c-interface-validate.cc mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-view.o -MD -MP -MF .deps/c-interface-view.Tpo -c -o c-interface-view.o c-interface-view.cc In file included from /usr/include/python2.6/Python.h:8, from cc-interface.hh:34, from c-interface-view.cc:8: /usr/include/python2.6/pyconfig.h:1031:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/limits.h:27, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/limits.h:122, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/limits.h:11, from /usr/lib/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:34, from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, from /usr/include/glib-2.0/gobject/gtype.h:26, from /usr/include/glib-2.0/gobject/gboxed.h:26, from /usr/include/glib-2.0/glib-object.h:25, from /usr/include/glib-2.0/gio/gioenums.h:30, from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/include/gtk-2.0/gdk/gdk.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:32, from c-interface-view.cc:2: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/python2.6/Python.h:8, from cc-interface.hh:34, from c-interface-view.cc:8: /usr/include/python2.6/pyconfig.h:1040:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/limits.h:27, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/limits.h:122, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/4.4.3/include-fixed/limits.h:11, from /usr/lib/glib-2.0/include/glibconfig.h:11, from /usr/include/glib-2.0/glib/gtypes.h:34, from /usr/include/glib-2.0/glib/galloca.h:34, from /usr/include/glib-2.0/glib.h:32, from /usr/include/glib-2.0/gobject/gtype.h:26, from /usr/include/glib-2.0/gobject/gboxed.h:26, from /usr/include/glib-2.0/glib-object.h:25, from /usr/include/glib-2.0/gio/gioenums.h:30, from /usr/include/glib-2.0/gio/giotypes.h:30, from /usr/include/glib-2.0/gio/gio.h:28, from /usr/include/gtk-2.0/gdk/gdkapplaunchcontext.h:30, from /usr/include/gtk-2.0/gdk/gdk.h:32, from /usr/include/gtk-2.0/gtk/gtk.h:32, from c-interface-view.cc:2: /usr/include/features.h:160:1: warning: this is the location of the previous definition mv -f .deps/c-interface-view.Tpo .deps/c-interface-view.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-widgets.o -MD -MP -MF .deps/c-interface-widgets.Tpo -c -o c-interface-widgets.o c-interface-widgets.cc mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters.o -MD -MP -MF .deps/c-interface-waters.Tpo -c -o c-interface-waters.o c-interface-waters.cc mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o c-interface-waters-gui.cc mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o c-interface.cc mv -f .deps/c-interface.Tpo .deps/c-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o callbacks.c callbacks.c: In function 'on_ok_button_coordinates_clicked': callbacks.c:204: warning: unused variable 'filename' callbacks.c: In function 'on_ok_button_dataset_clicked': callbacks.c:301: warning: unused variable 'itmp' callbacks.c: In function 'on_about1_activate': callbacks.c:391: warning: unused variable 'text_widget' callbacks.c: In function 'on_show_symmetry_ok_button_clicked': callbacks.c:680: warning: unused variable 'imol' callbacks.c: In function 'on_show_symmetry_apply_button_clicked': callbacks.c:769: warning: unused variable 'imol' callbacks.c: In function 'on_anisotropic_atoms1_activate': callbacks.c:884: warning: unused variable 'imol' callbacks.c: In function 'on_show_aniso_ok_button_clicked': callbacks.c:947: warning: unused variable 'imol' callbacks.c: In function 'on_find_ligand_many_atoms_continue_button_clicked': callbacks.c:2080: warning: implicit declaration of function 'execute_ligand_search_py' callbacks.c: In function 'on_pointer_atom_type_ok_button_clicked': callbacks.c:3787: warning: unused variable 'type' callbacks.c: In function 'on_run_refmac_phase_input_optionmenu_changed': callbacks.c:3956: warning: unused variable 'sad_checkbutton' callbacks.c: In function 'on_run_refmac_twin_checkbutton_toggled': callbacks.c:4037: warning: unused variable 'mtz_file_frame' callbacks.c: In function 'on_run_refmac_mtz_filechooser_button_clicked': callbacks.c:4192: warning: unused variable 'mtz_filename' callbacks.c:4191: warning: unused variable 'mtz_file_label' callbacks.c: In function 'on_centre_atom_label_ok_button_clicked': callbacks.c:5392: warning: unused variable 'off' callbacks.c: In function 'on_column_label_expert_mode_button_clicked': callbacks.c:5631: warning: unused variable 'is_expert_mode_flag' callbacks.c: In function 'on_preferences_destroy': callbacks.c:6469: warning: unused variable 'w' callbacks.c: In function 'on_preferences_model_toolbar_show_radiobutton_toggled': callbacks.c:7636: warning: unused variable 'w' callbacks.c: In function 'on_preferences_model_toolbar_right_radiobutton_toggled': callbacks.c:7650: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_left_radiobutton_toggled': callbacks.c:7664: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_top_radiobutton_toggled': callbacks.c:7678: warning: unused variable 'show' callbacks.c: In function 'on_preferences_model_toolbar_bottom_radiobutton_toggled': callbacks.c:7692: warning: unused variable 'show' callbacks.c: In function 'on_pointer_distances_checkbutton_toggled': callbacks.c:7940: warning: unused variable 'dialog' callbacks.c: In function 'on_delete_item_dialog_destroy': callbacks.c:8125: warning: unused variable 'w' callbacks.c: In function 'on_ncs_controller_molecule_n_display_chain_ich_checkbutton_toggled': callbacks.c:8890: warning: unused variable 'w' callbacks.c: In function 'on_dataset_filechooserdialog1_response': callbacks.c:10492: warning: unused variable 'itmp' mv -f .deps/callbacks.Tpo .deps/callbacks.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT cmtz-interface.o -MD -MP -MF .deps/cmtz-interface.Tpo -c -o cmtz-interface.o cmtz-interface.cc mv -f .deps/cmtz-interface.Tpo .deps/cmtz-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT command-line.o -MD -MP -MF .deps/command-line.Tpo -c -o command-line.o command-line.cc mv -f .deps/command-line.Tpo .deps/command-line.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT cmdline.o -MD -MP -MF .deps/cmdline.Tpo -c -o cmdline.o cmdline.c mv -f .deps/cmdline.Tpo .deps/cmdline.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o coot-align.cc mv -f .deps/coot-align.Tpo .deps/coot-align.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-nomenclature.o -MD -MP -MF .deps/coot-nomenclature.Tpo -c -o coot-nomenclature.o coot-nomenclature.cc mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue.o -MD -MP -MF .deps/coot-glue.Tpo -c -o coot-glue.o coot-glue.c mv -f .deps/coot-glue.Tpo .deps/coot-glue.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o coot-glue-gtk2.c mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o coot-glue-gtk2-python.cc mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o coot-hydrogens.cc mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o coot_pythonmodule.cc mv -f .deps/coot_pythonmodule.Tpo .deps/coot_pythonmodule.Po swig -o coot_wrap_guile_pre_gtk1.cc -DHAVE_SYS_STDTYPES_H=0 -I../src -guile -c++ ../src/coot.i /bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk1 coot_wrap_guile_pre_gtk1.cc coot_wrap_guile_gtk1.cc guile_config: guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found gtk2: gtk1 g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_guile_gtk1.o -MD -MP -MF .deps/coot_wrap_guile_gtk1.Tpo -c -o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk1.cc mv -f .deps/coot_wrap_guile_gtk1.Tpo .deps/coot_wrap_guile_gtk1.Po swig -o coot_wrap_guile_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE -DHAVE_SYS_STDTYPES_H=0 -I../src -guile -c++ ../src/coot.i /bin/bash ../src/post-process-coot-wrap-guile.sh "" gtk2 coot_wrap_guile_pre_gtk2.cc coot_wrap_guile_gtk2.cc guile_config: guile_version: ../src/post-process-coot-wrap-guile.sh: line 40: --version: command not found gtk2: gtk2 g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_guile_gtk2.o -MD -MP -MF .deps/coot_wrap_guile_gtk2.Tpo -c -o coot_wrap_guile_gtk2.o coot_wrap_guile_gtk2.cc mv -f .deps/coot_wrap_guile_gtk2.Tpo .deps/coot_wrap_guile_gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT geometry-graphs.o -MD -MP -MF .deps/geometry-graphs.Tpo -c -o geometry-graphs.o geometry-graphs.cc mv -f .deps/geometry-graphs.Tpo .deps/geometry-graphs.Po g++ -DPACKAGE_NAME=\"coot\" 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.deps/graphics-info-refmac.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-graphs.o -MD -MP -MF .deps/graphics-info-graphs.Tpo -c -o graphics-info-graphs.o graphics-info-graphs.cc mv -f .deps/graphics-info-graphs.Tpo .deps/graphics-info-graphs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 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-DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-gui.o -MD -MP -MF .deps/graphics-info-gui.Tpo -c -o graphics-info-gui.o graphics-info-gui.cc mv -f .deps/graphics-info-gui.Tpo .deps/graphics-info-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-modelling.o -MD -MP -MF .deps/graphics-info-modelling.Tpo -c -o graphics-info-modelling.o graphics-info-modelling.cc mv -f .deps/graphics-info-modelling.Tpo .deps/graphics-info-modelling.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation.o -MD -MP -MF .deps/graphics-info-navigation.Tpo -c -o graphics-info-navigation.o graphics-info-navigation.cc mv -f .deps/graphics-info-navigation.Tpo .deps/graphics-info-navigation.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-navigation-gtk1.o -MD -MP -MF .deps/graphics-info-navigation-gtk1.Tpo -c -o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk1.cc mv -f .deps/graphics-info-navigation-gtk1.Tpo .deps/graphics-info-navigation-gtk1.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' 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-I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb 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graphics-info-preferences.o graphics-info-preferences.cc mv -f .deps/graphics-info-preferences.Tpo .deps/graphics-info-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-network.o -MD -MP -MF .deps/graphics-info-network.Tpo -c -o graphics-info-network.o graphics-info-network.cc mv -f .deps/graphics-info-network.Tpo .deps/graphics-info-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-mutate.o -MD -MP -MF .deps/graphics-info-mutate.Tpo -c -o graphics-info-mutate.o graphics-info-mutate.cc mv -f .deps/graphics-info-mutate.Tpo .deps/graphics-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' 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-I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS 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.deps/graphics-info-pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 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-DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT graphics-info-state.o -MD -MP -MF .deps/graphics-info-state.Tpo -c -o graphics-info-state.o graphics-info-state.cc mv -f .deps/graphics-info-state.Tpo .deps/graphics-info-state.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils 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-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gl-matrix.o -MD -MP -MF .deps/gl-matrix.Tpo -c -o gl-matrix.o gl-matrix.cc mv -f .deps/gl-matrix.Tpo .deps/gl-matrix.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gtk-manual.o -MD -MP -MF .deps/gtk-manual.Tpo -c -o gtk-manual.o gtk-manual.cc mv -f .deps/gtk-manual.Tpo .deps/gtk-manual.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT gtk-widget-conversion-utils.o -MD -MP -MF .deps/gtk-widget-conversion-utils.Tpo -c -o gtk-widget-conversion-utils.o gtk-widget-conversion-utils.cc mv -f .deps/gtk-widget-conversion-utils.Tpo .deps/gtk-widget-conversion-utils.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT gtk2-interface.o -MD -MP -MF .deps/gtk2-interface.Tpo -c -o gtk2-interface.o gtk2-interface.c mv -f .deps/gtk2-interface.Tpo .deps/gtk2-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c mv -f .deps/interface.Tpo .deps/interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT lbg-interface.o -MD -MP -MF .deps/lbg-interface.Tpo -c -o lbg-interface.o lbg-interface.cc mv -f .deps/lbg-interface.Tpo .deps/lbg-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info.o -MD -MP -MF .deps/molecule-class-info.Tpo -c -o molecule-class-info.o molecule-class-info.cc mv -f .deps/molecule-class-info.Tpo .deps/molecule-class-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-maps.o -MD -MP -MF .deps/molecule-class-info-maps.Tpo -c -o molecule-class-info-maps.o molecule-class-info-maps.cc mv -f .deps/molecule-class-info-maps.Tpo .deps/molecule-class-info-maps.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-other.o -MD -MP -MF .deps/molecule-class-info-other.Tpo -c -o molecule-class-info-other.o molecule-class-info-other.cc mv -f .deps/molecule-class-info-other.Tpo .deps/molecule-class-info-other.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-build.o -MD -MP -MF .deps/molecule-class-info-build.Tpo -c -o molecule-class-info-build.o molecule-class-info-build.cc mv -f .deps/molecule-class-info-build.Tpo .deps/molecule-class-info-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT molecule-class-info-mutate.o -MD -MP -MF .deps/molecule-class-info-mutate.Tpo -c -o molecule-class-info-mutate.o molecule-class-info-mutate.cc mv -f .deps/molecule-class-info-mutate.Tpo .deps/molecule-class-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb 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molecule-class-info-residues.o molecule-class-info-residues.cc mv -f .deps/molecule-class-info-residues.Tpo .deps/molecule-class-info-residues.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT 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molecule-class-info-widget-work.o molecule-class-info-widget-work.cc mv -f .deps/molecule-class-info-widget-work.Tpo .deps/molecule-class-info-widget-work.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread 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-DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT pick.o -MD -MP -MF .deps/pick.Tpo -c -o pick.o pick.cc mv -f .deps/pick.Tpo .deps/pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT protein_db-interface.o -MD -MP -MF .deps/protein_db-interface.Tpo -c -o protein_db-interface.o protein_db-interface.cc mv -f .deps/protein_db-interface.Tpo .deps/protein_db-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT read-phs.o -MD -MP -MF .deps/read-phs.Tpo -c -o read-phs.o read-phs.c read-phs.c: In function 'try_read_phs_file': read-phs.c:47: warning: unused variable 'is_pha_extension' mv -f .deps/read-phs.Tpo .deps/read-phs.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT read-cif.o -MD -MP -MF .deps/read-cif.Tpo -c -o read-cif.o read-cif.c mv -f .deps/read-cif.Tpo .deps/read-cif.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT rama_mousey.o -MD -MP -MF .deps/rama_mousey.Tpo -c -o rama_mousey.o rama_mousey.cc mv -f .deps/rama_mousey.Tpo .deps/rama_mousey.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT rama_plot.o -MD -MP -MF .deps/rama_plot.Tpo -c -o rama_plot.o rama_plot.cc mv -f .deps/rama_plot.Tpo .deps/rama_plot.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT restraints-editor.o -MD -MP -MF .deps/restraints-editor.Tpo -c -o restraints-editor.o restraints-editor.cc mv -f .deps/restraints-editor.Tpo .deps/restraints-editor.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.c mv -f .deps/support.Tpo .deps/support.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT support-gtk2-extras.o -MD -MP -MF .deps/support-gtk2-extras.Tpo -c -o support-gtk2-extras.o support-gtk2-extras.c mv -f .deps/support-gtk2-extras.Tpo .deps/support-gtk2-extras.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT testing.o -MD -MP -MF .deps/testing.Tpo -c -o testing.o testing.cc mv -f .deps/testing.Tpo .deps/testing.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c mv -f .deps/trackball.Tpo .deps/trackball.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT sequence-view.o -MD -MP -MF .deps/sequence-view.Tpo -c -o sequence-view.o sequence-view.cc mv -f .deps/sequence-view.Tpo .deps/sequence-view.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -Wall -g -O2 -D_REENTRANT -MT seq-view-interface.o -MD -MP -MF .deps/seq-view-interface.Tpo -c -o seq-view-interface.o seq-view-interface.c mv -f .deps/seq-view-interface.Tpo .deps/seq-view-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT user-mods.o -MD -MP -MF .deps/user-mods.Tpo -c -o user-mods.o user-mods.cc mv -f .deps/user-mods.Tpo .deps/user-mods.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT xmap-utils.o -MD -MP -MF .deps/xmap-utils.Tpo -c -o xmap-utils.o xmap-utils.cc mv -f .deps/xmap-utils.Tpo .deps/xmap-utils.Po swig -o coot_wrap_python_pre_gtk2.cc -DCOOT_USE_GTK2_INTERFACE -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -I../src -shadow -python -c++ ../src/coot.i && mv coot.py coot_gtk2.py /bin/bash ../src/post-process-coot-wrap-python.sh gtk2 coot_wrap_python_pre_gtk2.cc coot_wrap_python_gtk2.cc g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT coot_wrap_python_gtk2.o -MD -MP -MF .deps/coot_wrap_python_gtk2.Tpo -c -o coot_wrap_python_gtk2.o coot_wrap_python_gtk2.cc mv -f .deps/coot_wrap_python_gtk2.Tpo .deps/coot_wrap_python_gtk2.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -lssm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib/python2.6/config -lpython2.6 -lutil -Wl,--export-dynamic -pthread -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -lglut -lXmu -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -pthread -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 -L/usr/lib -lgsl -lgslcblas -lm -lgoocanvas -pthread -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lm -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lrt -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-10.04.2-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o coot-real main.o svn-revision.o c-inner-main.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-mmdb.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-preferences.o c-interface-refine.o c-interface-scm.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o callbacks.o cmtz-interface.o command-line.o cmdline.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk1.o coot_wrap_guile_gtk2.o geometry-graphs.o get-residue.o flev.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-refmac.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-render.o graphics-info-state.o graphics-info-superpose.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o support.o support-gtk2-extras.o testing.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -Wl,--export-dynamic -pthread -pthread -pthread -pthread ../lbg/.libs/libcoot-lidia.a ../ligand/.libs/libcoot-ligand.a -L/usr/lib -L/usr ../lidia-core/.libs/libcoot-lidia-core.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../coot-surface/.libs/libcoot-surface.a ../surface/.libs/libccp4mg-surface.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a ../protein_db/.libs/libcoot-protein-db.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lssm -lmmdb -L/usr/lib/python2.6/config -lpython2.6 -lutil /usr/lib/libgtkglext-x11-1.0.so /usr/lib/libgdkglext-x11-1.0.so -lGLU -lGL -lXt -lSM -lICE /usr/lib/libpangox-1.0.so -lX11 -lglut -lXmu /usr/lib/libgnomecanvas-2.so /usr/lib/libart_lgpl_2.so -lgsl -lgslcblas -lgoocanvas /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libgio-2.0.so /usr/lib/libpangoft2-1.0.so /usr/lib/libgdk_pixbuf-2.0.so -lm /usr/lib/libpangocairo-1.0.so /usr/lib/libcairo.so /usr/lib/libpango-1.0.so /usr/lib/libfreetype.so -lfontconfig /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so /usr/lib/libgthread-2.0.so -lrt /usr/lib/libglib-2.0.so -pthread g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT density-score-by-residue-src.o -MD -MP -MF .deps/density-score-by-residue-src.Tpo -c -o density-score-by-residue-src.o density-score-by-residue-src.cc mv -f .deps/density-score-by-residue-src.Tpo .deps/density-score-by-residue-src.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-10.04.2-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT fix-nomenclature.o -MD -MP -MF .deps/fix-nomenclature.Tpo -c -o fix-nomenclature.o fix-nomenclature.cc mv -f .deps/fix-nomenclature.Tpo .deps/fix-nomenclature.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/libcoot-ligand.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/usr/lib -lgsl -lgslcblas -lm -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-10.04.2-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/.libs/libcoot-ligand.a -L/usr/lib -L/usr ../db-main/.libs/libcoot-db-main.a ../ideal/.libs/libcoot-ideal.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a -lgsl -lgslcblas -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT align.o -MD -MP -MF .deps/align.Tpo -c -o align.o align.cc mv -f .deps/align.Tpo .deps/align.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-10.04.2-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-coot-align align.o coot-align.o ../geometry/.libs/libcoot-geometry.a -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lm g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.7-pre-1\" -DPACKAGE_STRING=\"coot\ 0.7-pre-1\" -DPACKAGE_BUGREPORT=\"paul.emsley@bioch.ox.ac.uk\" -DPACKAGE_URL=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.7-pre-1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../compat -I../coords -I../ccp4mg-utils -I../utils -I../coot-utils -I../protein_db -I../intl -I../skeleton -I../angles -I../db-main -I../mini-mol -I../ligand -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -I../cootaneer -I../lidia-core -I../lbg -DHAVE_SYS_STDTYPES_H=0 -DHAVE_GNOME_CANVAS -pthread -D_REENTRANT -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/directfb -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -D_REENTRANT -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/usr/include/goocanvas-1.0 -pthread -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/usr/include -I/usr/include/gpp4 -pthread -I/usr/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -MT test-chol.o -MD -MP -MF .deps/test-chol.Tpo -c -o test-chol.o test-chol.cc mv -f .deps/test-chol.Tpo .deps/test-chol.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-10.04.2-python-gtk2"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 -L/usr/lib -L/usr -lmmdb -lm -lsrfftw -lsfftw -lz -lm -lpthread -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-10.04.2-python-gtk2\" -DHAVE_SYS_STDTYPES_H=0 -DUSE_PYTHON -I/usr/include/python2.6 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O2 -Wl,-Bsymbolic-functions -o test-cholesky test-chol.o gl-matrix.o ../coords/.libs/libcoot-coords.a -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../geometry/.libs/libcoot-geometry.a ../utils/.libs/libcoot-utils.a -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-mmdb -lclipper-minimol -lclipper-cns -lclipper-core -lgpp4 /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lz -lpthread -lmmdb -lgsl -lgslcblas -lm cp coot_gtk2.py coot.py make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/src' Making all in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/data' Making all in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' Making all in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/doc' Updating ./versuser.texi restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (makeinfo --no-split --version) >/dev/null 2>&1; then \ for f in coot-user-manual.info coot-user-manual.info-[0-9] coot-user-manual.info-[0-9][0-9] coot-user-manual.i[0-9] coot-user-manual.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if makeinfo --no-split -I . \ -o coot-user-manual.info coot-user-manual.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./coot-user-manual.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' sed -e 's/#GTK2 //' ./cootrc.template > cootrc make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' # make ubuntu splash screen sh debian/make-ubuntu-splash.sh # make a nice background image for coots-nest convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png touch build-arch-stamp # Curretly nothing to do to build arch-indep packages, # except make sure config.status is up-to-date touch build-indep-stamp /usr/bin/fakeroot debian/rules binary-arch dh_testdir ./configure --prefix=/usr \ --with-gtk2 \ --with-mmdb-prefix=/usr \ --with-ssmlib-prefix=/usr \ --with-fftw-library-prefix=s \ --with-gpp4 \ --with-python \ --with-pygtk=/usr checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for gcc option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for CCP4... yes checking for MMDB... yes checking for SSMLib... /usr checking for Clipper... yes Not using guile checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for guile-gtk... checking libglade... no checking for Goocanvas... yes Not using database checking for curl >= 7.9.7... FAILED configure: WARNING: curl-config was not found checking build type... Linux-x86_64-ubuntu-10.04.2-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating rama-data/Makefile config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_testdir /usr/bin/make CFLAGS="-Wall -g -O2 -D_REENTRANT" make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' Making all in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making all in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' Making all in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' Making all in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' Making all in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' Making all in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making all in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/scheme' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/scheme' Making all in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python' Making all in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/macros' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/macros' Making all in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/compat' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/compat' Making all in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/utils' Making all in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' Making all in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/geometry' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/geometry' Making all in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' Making all in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' Making all in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/surface' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/surface' Making all in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' Making all in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' Making all in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coords' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coords' Making all in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/angles' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/angles' Making all in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' Making all in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' Making all in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' Making all in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/db-main' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/db-main' Making all in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ideal' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ideal' Making all in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ligand' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ligand' Making all in high-res make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/high-res' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/high-res' Making all in build make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/build' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/build' Making all in greg-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' Making all in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' Making all in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/analysis' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/analysis' Making all in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/tw' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/tw' Making all in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lbg' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lbg' Making all in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' Making all in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/src' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/src' Making all in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/data' Making all in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' Making all in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' # make ubuntu splash screen sh debian/make-ubuntu-splash.sh # make a nice background image for coots-nest convert -scale 200% pixmaps/ubuntu-splash.png pixmaps/coots-nest-background.png touch build-arch-stamp dh_testdir dh_testroot dh_prep rm -f debian/coot.substvars rm -f debian/coot.*.debhelper rm -rf debian/coot/ rm -f debian/coot-data.substvars rm -f debian/coot-data.*.debhelper rm -rf debian/coot-data/ rm -f debian/coot-docs.substvars rm -f debian/coot-docs.*.debhelper rm -rf debian/coot-docs/ # Install the compiled library in debian/tmp tree /usr/bin/make DESTDIR=/build/buildd/coot-0.7pre1+svn3406/debian/tmp install make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' Making install in auxil make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making install in catcheck make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/catcheck' Making install in rama make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/rama' Making install in sec-str make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/sec-str' Making install in strand-analysis make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/strand-analysis' Making install in vectors make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil/vectors' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[4]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/auxil' Making install in scheme make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/scheme' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/scheme' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/scheme" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/scheme" /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm prodrg-import.scm '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/scheme' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/scheme' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/scheme' Making install in python make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/python" /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py coot_toolbuttons.py '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/python' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python' Making install in macros make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/macros' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/macros' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/macros' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/macros' Making install in compat make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/compat' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/compat' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-getopt.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/compat' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/compat' Making install in utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/utils' Making install in protein_db make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' test -z "/usr/share/coot/protein_db" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/protein_db" /usr/bin/install -c -m 644 protein.db '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/protein_db' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/protein_db' Making install in geometry make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/geometry' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/geometry' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/geometry' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/geometry' Making install in mini-mol make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/mini-mol' Making install in coot-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-utils' Making install in surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/surface' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/surface' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/surface' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/surface' Making install in coot-surface make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coot-surface' Making install in lidia-core make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lidia-core' Making install in coords make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coords' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/coords' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coords' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/coords' Making install in angles make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/angles' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/angles' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/angles' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/angles' Making install in skeleton make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/skeleton' Making install in ccp4mg-utils make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ccp4mg-utils' Making install in density-contour make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/density-contour' Making install in db-main make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/db-main' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/db-main' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/db-main' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/db-main' Making install in ideal make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ideal' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ideal' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ideal' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ideal' Making install in ligand make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ligand' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/ligand' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c findligand-real findwaters-real '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c findligand-real /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/findligand-real libtool: install: /usr/bin/install -c findwaters-real /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/findwaters-real test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /usr/bin/install -c findwaters findligand '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ligand' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/ligand' Making install in high-res make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/high-res' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/high-res' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/high-res' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/high-res' Making install in build make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/build' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/build' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 CalphaBuild.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/build' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/build' Making install in greg-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/greg-tests' Making install in python-tests make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/python-tests' Making install in analysis make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/analysis' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/analysis' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c bfactan '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c bfactan /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/bfactan test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 bfkurt.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/analysis' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/analysis' Making install in tw make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/tw' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/tw' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 coot-tw.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/tw' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/tw' Making install in lbg make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lbg' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/lbg' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c lidia '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c lidia /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/lidia test -z "/usr/share/coot/pixmaps" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/pixmaps" /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/pixmaps' test -z "/usr/include" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include" /usr/bin/install -c -m 644 lbg.hh wmolecule.hh rdkit-interface.hh flev-annotations.hh '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/include' test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 lbg.glade '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lbg' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/lbg' Making install in cootaneer make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/cootaneer' Making install in src make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/src' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-real density-score-by-residue-real fix-nomenclature-errors '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c coot-real /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/coot-real libtool: install: /usr/bin/install -c density-score-by-residue-real /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/density-score-by-residue-real libtool: install: /usr/bin/install -c fix-nomenclature-errors /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin/fix-nomenclature-errors test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin" /usr/bin/install -c coot density-score-by-residue '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/bin' test -z "/usr/share/coot/python" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/python" /usr/bin/install -c coot.py '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/python' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/src' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/src' Making install in data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/data' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/data" /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/data' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/data' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/data' Making install in rama-data make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/coot/rama-data" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/rama-data" /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/rama-data' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/rama-data' Making install in doc make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/info" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/info" /usr/bin/install -c -m 644 ./coot-user-manual.info '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/info' install-info --info-dir='/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/info' '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/info/coot-user-manual.info' install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406/doc' make[2]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' make[3]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' make[3]: Nothing to be done for `install-exec-am'. if test -d ./pixmaps; then \ /bin/bash ./mkinstalldirs /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/pixmaps; \ for pixmap in ./pixmaps/*; do \ if test -f $pixmap; then \ /usr/bin/install -c -m 644 $pixmap /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot/pixmaps; \ fi \ done \ fi if test -z "" ; then \ /usr/bin/install -c -m 644 ./syminfo.lib /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot; \ else \ /usr/bin/install -c -m 644 ./windows/syminfo.lib /build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot; \ fi test -z "/usr/share/coot" || /bin/mkdir -p "/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot" /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk theor-helix-70.pdb '/build/buildd/coot-0.7pre1+svn3406/debian/tmp/usr/share/coot' make[3]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' make[2]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' # Override the distributed wrappers with our own for p in coot density-score-by-residue findligand findwaters; do \ m4 -I debian --define=XXX=$p debian/script.m4 > debian/tmp/usr/bin/$p ; \ done # decode image and convert to smaller sizes uudecode < debian/coot-button-64x64.png.uu for g in 22x22 24x24 32x32 48x48; do \ convert -geometry $g coot-button-64x64.png coot-button-$g.png;\ done # install the newly generated png's in the hicolor theme for g in 22x22 24x24 32x32 48x48 64x64; do \ install -D coot-button-$g.png debian/tmp/usr/share/icons/hicolor/$g/apps/coot.png;\ done dh_install -a install -d debian/coot//usr cp -a ./debian/tmp/usr/bin debian/coot//usr/ install -d debian/coot//usr/share cp -a ./debian/tmp/usr/share/icons debian/coot//usr/share/ install -d debian/coot//usr/share/applications cp -a ./debian/coot.desktop debian/coot//usr/share/applications/ cp -a ./debian/coots-nest debian/coot//usr/bin/ dh_testdir dh_testroot dh_installmenu install -d debian/coot/usr/share/menu install -p -m644 debian/coot.menu debian/coot/usr/share/menu/coot echo "# Automatically added by dh_installmenu">> debian/coot.postinst.debhelper sed "" /usr/share/debhelper/autoscripts/postinst-menu >> debian/coot.postinst.debhelper echo '# End automatically added section' >> debian/coot.postinst.debhelper echo "# Automatically added by dh_installmenu">> debian/coot.postrm.debhelper sed "" /usr/share/debhelper/autoscripts/postrm-menu >> debian/coot.postrm.debhelper echo '# End automatically added section' >> debian/coot.postrm.debhelper dh_installman install -d debian/coot/usr/share/man/man1/ install -p -m644 debian/bfactan.1 debian/coot/usr/share/man/man1/bfactan.1 install -p -m644 debian/coot.1 debian/coot/usr/share/man/man1/coot.1 install -p -m644 debian/density-score-by-residue.1 debian/coot/usr/share/man/man1/density-score-by-residue.1 install -p -m644 debian/findligand.1 debian/coot/usr/share/man/man1/findligand.1 install -p -m644 debian/findwaters.1 debian/coot/usr/share/man/man1/findwaters.1 install -p -m644 debian/fix-nomenclature-errors.1 debian/coot/usr/share/man/man1/fix-nomenclature-errors.1 install -p -m644 debian/lidia.1 debian/coot/usr/share/man/man1/lidia.1 install -p -m644 debian/coots-nest.1 debian/coot/usr/share/man/man1/coots-nest.1 man --recode UTF-8 ./lidia\.1 > lidia\.1\.new chmod 644 lidia.1.new mv -f lidia.1.new lidia.1 man --recode UTF-8 ./density\-score\-by\-residue\.1 > density\-score\-by\-residue\.1\.new chmod 644 density-score-by-residue.1.new mv -f density-score-by-residue.1.new density-score-by-residue.1 man --recode UTF-8 ./coots\-nest\.1 > coots\-nest\.1\.new chmod 644 coots-nest.1.new mv -f coots-nest.1.new coots-nest.1 man --recode UTF-8 ./findligand\.1 > findligand\.1\.new chmod 644 findligand.1.new mv -f findligand.1.new findligand.1 man --recode UTF-8 ./coot\.1 > coot\.1\.new chmod 644 coot.1.new mv -f coot.1.new coot.1 man --recode UTF-8 ./findwaters\.1 > findwaters\.1\.new chmod 644 findwaters.1.new mv -f findwaters.1.new findwaters.1 man --recode UTF-8 ./bfactan\.1 > bfactan\.1\.new chmod 644 bfactan.1.new mv -f bfactan.1.new bfactan.1 man --recode UTF-8 ./fix\-nomenclature\-errors\.1 > fix\-nomenclature\-errors\.1\.new chmod 644 fix-nomenclature-errors.1.new mv -f fix-nomenclature-errors.1.new fix-nomenclature-errors.1 dh_installinfo install -d debian/coot/usr/share/info cp debian/tmp/usr/share/info/coot-user-manual.info debian/coot/usr/share/info chmod -R go=rX debian/coot/usr/share/info/ chmod -R u\+rw debian/coot/usr/share/info/ (grep -s -v misc:Depends debian/coot.substvars; echo "misc:Depends=dpkg (>= 1.15.4) | install-info") > debian/coot.substvars.new mv debian/coot.substvars.new debian/coot.substvars dh_strip dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/coot-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findwaters-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/lidia strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/bfactan strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/fix-nomenclature-errors strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/density-score-by-residue-real strip --remove-section=.comment --remove-section=.note debian/coot/usr/bin/findligand-real Can't stat debian/coot-data: No such file or directory at /usr/bin/dh_strip.pkg-create-dbgsym line 204 Can't stat debian/coot-docs: No such file or directory at /usr/bin/dh_strip.pkg-create-dbgsym line 204 dh_makeshlibs rm -f debian/coot/DEBIAN/shlibs rm -f debian/coot-data/DEBIAN/shlibs find: `debian/coot-data': No such file or directory rm -f debian/coot-docs/DEBIAN/shlibs find: `debian/coot-docs': No such file or directory dh_shlibdeps install -o 0 -g 0 -d debian/coot/DEBIAN dpkg-shlibdeps -Tdebian/coot.substvars debian/coot/usr/bin/coot-real debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/lidia debian/coot/usr/bin/bfactan debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/findligand-real dpkg-shlibdeps: warning: dependency on libXt.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libsfftw.so.2 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgslcblas.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfontconfig.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libatk-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangocairo-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfreetype.so.6 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgpp4.so.0 could be avoided if "debian/coot/usr/bin/findligand-real debian/coot/usr/bin/bfactan debian/coot/usr/bin/density-score-by-residue-real debian/coot/usr/bin/fix-nomenclature-errors debian/coot/usr/bin/lidia debian/coot/usr/bin/findwaters-real debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libICE.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangox-1.0.so.0 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libXmu.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libutil.so.1 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on librt.so.1 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgio-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgmodule-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpango-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libSM.so.6 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgthread-2.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libart_lgpl_2.so.2 could be avoided if "debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpangoft2-1.0.so.0 could be avoided if "debian/coot/usr/bin/lidia debian/coot/usr/bin/coot-real" were not uselessly linked against it (they use none of its symbols). install -o 0 -g 0 -d debian/coot-data/DEBIAN install -o 0 -g 0 -d debian/coot-docs/DEBIAN # Now call make recursively to execute the common bits /usr/bin/make -f debian/rules DH_OPTIONS=-a binary-common make[1]: Entering directory `/build/buildd/coot-0.7pre1+svn3406' dh_testdir dh_testroot dh_installchangelogs ChangeLog install -d debian/coot/usr/share/doc/coot install -o 0 -g 0 -p -m644 debian/changelog debian/coot/usr/share/doc/coot/changelog.Debian install -o 0 -g 0 -p -m644 ChangeLog debian/coot/usr/share/doc/coot/changelog dh_installdocs RELEASE-NOTES debian/citation.bib cp -a RELEASE-NOTES debian/coot/usr/share/doc/coot cp -a debian/citation.bib debian/coot/usr/share/doc/coot chown -R 0:0 debian/coot/usr/share/doc chmod -R go=rX debian/coot/usr/share/doc chmod -R u\+rw debian/coot/usr/share/doc install -g 0 -o 0 -m 644 -p debian/copyright debian/coot/usr/share/doc/coot/copyright dh_installdirs dh_compress cd debian/coot chmod a-x usr/share/info/coot-user-manual.info usr/share/man/man1/lidia.1 usr/share/man/man1/density-score-by-residue.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/findligand.1 usr/share/man/man1/coot.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/bfactan.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/doc/coot/changelog usr/share/doc/coot/RELEASE-NOTES usr/share/doc/coot/changelog.Debian gzip -9nf usr/share/info/coot-user-manual.info usr/share/man/man1/lidia.1 usr/share/man/man1/density-score-by-residue.1 usr/share/man/man1/coots-nest.1 usr/share/man/man1/findligand.1 usr/share/man/man1/coot.1 usr/share/man/man1/findwaters.1 usr/share/man/man1/bfactan.1 usr/share/man/man1/fix-nomenclature-errors.1 usr/share/doc/coot/changelog usr/share/doc/coot/RELEASE-NOTES usr/share/doc/coot/changelog.Debian cd '/build/buildd/coot-0.7pre1+svn3406' dh_fixperms find debian/coot -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/coot ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/coot/usr/share/doc -type f ! -regex 'debian/coot/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/coot/usr/share/man debian/coot/usr/man/ debian/coot/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot -perm -5 -type f \( -name '*.so*' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/coot/usr/lib/perl5 debian/coot/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/coot/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x dh_installdeb printf '#!/bin/sh set -e ' > debian/coot/DEBIAN/postinst cat debian/coot.postinst.debhelper >> debian/coot/DEBIAN/postinst chown 0:0 debian/coot/DEBIAN/postinst chmod 755 debian/coot/DEBIAN/postinst printf '#!/bin/sh set -e ' > debian/coot/DEBIAN/postrm cat debian/coot.postrm.debhelper >> debian/coot/DEBIAN/postrm chown 0:0 debian/coot/DEBIAN/postrm chmod 755 debian/coot/DEBIAN/postrm dh_gencontrol dpkg-gencontrol -pcoot -ldebian/changelog -Tdebian/coot.substvars -Pdebian/coot chmod 644 debian/coot/DEBIAN/control chown 0:0 debian/coot/DEBIAN/control dh_md5sums (cd debian/coot >/dev/null ; find . -type f ! -regex '.*/DEBIAN/.*' -printf '%P\0' | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/coot/DEBIAN/md5sums chown 0:0 debian/coot/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/coot .. INFO: Disabling pkgbinarymangler for PPA build WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `coot' in `../coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb'. make[1]: Leaving directory `/build/buildd/coot-0.7pre1+svn3406' dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110315-1229 chroot-autobuild/build/buildd/coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb: new debian package, version 2.0. size 6190504 bytes: control archive= 2181 bytes. 1504 bytes, 18 lines control 2168 bytes, 33 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: coot Version: 0.7pre1+svn3406-0ubuntu3~lucid1 Architecture: amd64 Maintainer: Morten Kjeldgaard Installed-Size: 14060 Depends: freeglut3, libart-2.0-2 (>= 2.3.18), libatk1.0-0 (>= 1.29.3), libc6 (>= 2.4), libcairo2 (>= 1.2.4), libclipper2, libfontconfig1 (>= 2.8.0), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglib2.0-0 (>= 2.12.0), libglu1-mesa | libglu1, libgnomecanvas2-0 (>= 2.11.1), libgomp1 (>= 4.2.1), libgoocanvas3 (>= 0.15), libgpp4-0 (>= 1.0.4), libgsl0ldbl (>= 1.9), libgtk2.0-0 (>= 2.16.0), libgtkglext1, libice6 (>= 1:1.0.0), libmmdb0, libpango1.0-0 (>= 1.14.0), libpng12-0 (>= 1.2.13-4), libpython2.6 (>= 2.6), libsm6, libssm0 (>= 0.1), libstdc++6 (>= 4.4.0), libx11-6, libxmu6, libxt6, sfftw2, zlib1g (>= 1:1.1.4), dpkg (>= 1.15.4) | install-info, coot-data, refmac-dict, python-vte, python Suggests: coot-docs Section: science Priority: optional Homepage: http://www.biop.ox.ac.uk/coot/ Description: model building program for macromolecular crystallography Coot is a program for constructing atomic models of macromolecules from x-ray diffraction data. Coot displays electron density maps and molecular models and allows model manipulations such as idealization, refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers. Validation tools such as Ramachandran and geometry plots are available to the user. This package provides a Coot build with embedded Python support. chroot-autobuild/build/buildd/coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb: drwxr-xr-x root/root 0 2011-03-15 12:29 ./ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/bin/ -rwxr-xr-x root/root 1266 2011-03-15 12:29 ./usr/bin/findwaters -rwxr-xr-x root/root 9066696 2011-03-15 12:29 ./usr/bin/coot-real -rwxr-xr-x root/root 963432 2011-03-15 12:29 ./usr/bin/findwaters-real -rwxr-xr-x root/root 1260 2011-03-15 12:29 ./usr/bin/coot -rwxr-xr-x root/root 1266 2011-03-15 12:29 ./usr/bin/findligand -rwxr-xr-x root/root 331736 2011-03-15 12:29 ./usr/bin/lidia -rwxr-xr-x root/root 1280 2011-03-15 12:29 ./usr/bin/density-score-by-residue -rwxr-xr-x root/root 7033 2011-03-15 12:13 ./usr/bin/coots-nest -rwxr-xr-x root/root 282456 2011-03-15 12:29 ./usr/bin/bfactan -rwxr-xr-x root/root 1318704 2011-03-15 12:29 ./usr/bin/fix-nomenclature-errors -rwxr-xr-x root/root 738040 2011-03-15 12:29 ./usr/bin/density-score-by-residue-real -rwxr-xr-x root/root 1228912 2011-03-15 12:29 ./usr/bin/findligand-real drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/info/ -rw-r--r-- root/root 62002 2011-03-15 12:29 ./usr/share/info/coot-user-manual.info.gz drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/applications/ -rw-r--r-- root/root 145 2011-03-15 12:13 ./usr/share/applications/coot.desktop drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/menu/ -rw-r--r-- root/root 115 2011-03-15 12:13 ./usr/share/menu/coot drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/doc/coot/ -rw-r--r-- root/root 919 2011-03-15 12:13 ./usr/share/doc/coot/citation.bib -rw-r--r-- root/root 44439 2011-03-15 12:13 ./usr/share/doc/coot/copyright -rw-r--r-- root/root 1139 2011-03-15 12:13 ./usr/share/doc/coot/changelog.Debian.gz -rw-r--r-- root/root 21835 2011-02-28 21:25 ./usr/share/doc/coot/RELEASE-NOTES.gz -rw-r--r-- root/root 56743 2011-02-28 21:25 ./usr/share/doc/coot/changelog.gz drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/man/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/man/man1/ -rw-r--r-- root/root 1007 2011-03-15 12:29 ./usr/share/man/man1/findligand.1.gz -rw-r--r-- root/root 3058 2011-03-15 12:29 ./usr/share/man/man1/coot.1.gz -rw-r--r-- root/root 367 2011-03-15 12:29 ./usr/share/man/man1/bfactan.1.gz -rw-r--r-- root/root 413 2011-03-15 12:29 ./usr/share/man/man1/coots-nest.1.gz -rw-r--r-- root/root 867 2011-03-15 12:29 ./usr/share/man/man1/findwaters.1.gz -rw-r--r-- root/root 354 2011-03-15 12:29 ./usr/share/man/man1/lidia.1.gz -rw-r--r-- root/root 386 2011-03-15 12:29 ./usr/share/man/man1/fix-nomenclature-errors.1.gz -rw-r--r-- root/root 655 2011-03-15 12:29 ./usr/share/man/man1/density-score-by-residue.1.gz drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/32x32/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/32x32/apps/ -rwxr-xr-x root/root 3647 2011-03-15 12:29 ./usr/share/icons/hicolor/32x32/apps/coot.png drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/64x64/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/64x64/apps/ -rwxr-xr-x root/root 8476 2011-03-15 12:29 ./usr/share/icons/hicolor/64x64/apps/coot.png drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/24x24/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/24x24/apps/ -rwxr-xr-x root/root 2781 2011-03-15 12:29 ./usr/share/icons/hicolor/24x24/apps/coot.png drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/22x22/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/22x22/apps/ -rwxr-xr-x root/root 2565 2011-03-15 12:29 ./usr/share/icons/hicolor/22x22/apps/coot.png drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2011-03-15 12:29 ./usr/share/icons/hicolor/48x48/apps/ -rwxr-xr-x root/root 5621 2011-03-15 12:29 ./usr/share/icons/hicolor/48x48/apps/coot.png coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.changes: Format: 1.8 Date: Tue, 15 Mar 2011 12:11:45 +0100 Source: coot Binary: coot coot-data coot-docs Architecture: amd64 Version: 0.7pre1+svn3406-0ubuntu3~lucid1 Distribution: lucid Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Morten Kjeldgaard Description: coot - model building program for macromolecular crystallography coot-data - various data files needed by Coot coot-docs - documentation for Coot Changes: coot (0.7pre1+svn3406-0ubuntu3~lucid1) lucid; urgency=low . * Coot's nest now stores working directory and window position in a config file. Checksums-Sha1: 6d44c885ef52a44757cb4505d88293e6d75045cd 6190504 coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb Checksums-Sha256: 1cef2f9dca1fc95386e3986781693d6ae2bc9d4d7f8fd650720600c0315c5db0 6190504 coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb Files: 3568eaadd6e4f662a36bcfb070fc1574 6190504 science optional coot_0.7pre1+svn3406-0ubuntu3~lucid1_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/coot-0.7pre1+svn3406 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base python-gobject-dev libavahi-common3 libxfixes-dev libx11-data m4 fontconfig-config gettext file zlib1g-dev libcairo2 x11-common python2.6 libx11-dev libxi6 sfftw2 libgtkglext1 automake libjpeg62 libxcursor1 python-gtk2 libssm-dev x11proto-input-dev libexpat1-dev sfftw-dev libjasper1 libpixman-1-dev libjpeg62-dev libxcomposite-dev libfontconfig1 libcupsimage2 freeglut3-dev libgtkglext1-dev libgfortran3 libart-2.0-2 libmagickcore2 python-cairo libsysfs-dev libx11-6 xtrans-dev x11proto-randr-dev libnewt0.52 libglu1-mesa libxinerama-dev libpango1.0-common libmpich1.0gf libxdamage1 libxt6 libffi5 libxml2-utils libglib2.0-dev libxcb-render-util0 tsconf swig libpaper1 imagemagick libdirectfb-dev libgs8 libgpp4-0 libxml2 libgail-dev x11proto-xext-dev libclipper2 pkg-config libthai-data libtool libice6 intltool-debian libavahi-client3 libxrender1 libfontconfig1-dev libgail-common libmmdb-dev mesa-common-dev libxrandr-dev libxext-dev libcups2 libdirectfb-extra libxau-dev libdatrie1 libxcb-render-util0-dev libxmu-headers libxrender-dev libpng12-dev libmagickwand2 libavahi-common-data libglu1-mesa-dev libxft2 libmmdb0 x11proto-render-dev libxext6 libsysfs2 libltdl7 libsqlite3-0 libdrm-dev libxinerama1 libgsl0ldbl libxdamage-dev libsm-dev libncursesw5 libxmu6 libxdmcp-dev defoma gsfonts libssm0 ttf-dejavu-core libgnomecanvas2-0 sharutils libcairo2-dev libgail18 fontconfig libxcb-render0-dev libgnomecanvas2-dev ghostscript autotools-dev libcroco3 libgpp4-dev python-support libxt-dev libpopt0 libfreetype6 libffi-dev libice-dev libatk1.0-0 libclipper-dev libgl1-mesa-dev x11proto-fixes-dev libfreetype6-dev libgtk2.0-0 x11proto-damage-dev libgl1-mesa-glx libxcb1 libart-2.0-dev libgoocanvas-common html2text diffstat libglade2-0 python2.6-dev libxrandr2 debhelper libpthread-stubs0 libgnomecanvas2-common libthai0 python libmagic1 python-gobject libtiff4 libexpat1 bsdmainutils libxau6 libpango1.0-dev libxcursor-dev libxcomposite1 x11proto-composite-dev mime-support x11proto-core-dev whiptail libts-0.0-0 libxcb1-dev libxi-dev shared-mime-info libxfixes3 libxdmcp6 python-gtk2-dev libxmu-dev libgtk2.0-dev po-debconf libatk1.0-dev quilt libdirectfb-1.2-0 libgoocanvas3 libxft-dev libgsl0-dev liblcms1 libgoocanvas-dev libpython2.6 python-dev man-db libxxf86vm1 x11proto-kb-dev texinfo fftw2 libpixman-1-0 x11proto-xinerama-dev libpango1.0-0 libpthread-stubs0-dev freeglut3 ucf libgtk2.0-common gettext-base fftw-dev libsm6 libxcb-render0 autoconf (Reading database ... 22918 files and directories currently installed.) 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110315-1231 Build needed 00:15:52, 1750868k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd'] Scanning for processes to kill in build /home/buildd/build-24571f6c6f8f5d5f0200e437a43ea48aa5a091dd/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd'] Unmounting chroot for build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '24571f6c6f8f5d5f0200e437a43ea48aa5a091dd'] Removing build 24571f6c6f8f5d5f0200e437a43ea48aa5a091dd