RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux rhenium 2.6.24-32-xen #1 SMP Mon Dec 3 16:12:25 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_124~0.IS.08.04 python-lpbuildd_124~0.IS.08.04 bzr-builder_0.7.2+bzr156-0ubuntu1~1.IS.8.04 bzr_2.4.0-0ubuntu2~11.IS.8.04 dpkg-dev_1.14.16.6ubuntu4.2. Syncing the system clock with the buildd NTP service... 11 Aug 14:51:20 ntpdate[3405]: step time server 10.211.37.1 offset -1380893.898314 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6214857', '/home/buildd/filecache-default/f5ea41dcc47e9e1dc171aef481863179130c15c7'] Unpacking chroot for build PACKAGEBUILD-6214857 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6214857'] Mounting chroot for build PACKAGEBUILD-6214857 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6214857', 'deb http://ppa.launchpad.net/dilawar/moose/ubuntu utopic main', 'deb http://ftpmaster.internal/ubuntu utopic main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-6214857 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6214857', 'i386'] Updating debian chroot for build PACKAGEBUILD-6214857 Ign http://archive-team.internal utopic InRelease Ign http://ppa.launchpad.net utopic InRelease Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://archive-team.internal utopic Release.gpg Get:1 http://ppa.launchpad.net utopic Release.gpg [836 B] Ign http://ftpmaster.internal utopic-updates InRelease Get:2 http://ppa.launchpad.net utopic Release [14.0 kB] Get:3 http://ftpmaster.internal utopic Release.gpg [933 B] Get:4 http://archive-team.internal utopic Release [723 B] Get:5 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:7 http://ftpmaster.internal utopic Release [58.5 kB] Ign http://ppa.launchpad.net utopic Release Get:8 http://ppa.launchpad.net utopic/main i386 Packages [975 B] Get:9 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:10 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:11 http://ftpmaster.internal utopic/main i386 Packages [1374 kB] Ign http://ppa.launchpad.net utopic/main Translation-en Get:12 http://archive-team.internal utopic/main i386 Packages Ign http://archive-team.internal utopic/main Translation-en Get:13 http://ftpmaster.internal utopic/restricted i386 Packages [13.7 kB] Get:14 http://ftpmaster.internal utopic/universe i386 Packages [6143 kB] Get:15 http://ftpmaster.internal utopic/multiverse i386 Packages [131 kB] Get:16 http://ftpmaster.internal utopic/main Translation-en [773 kB] Get:17 http://ftpmaster.internal utopic/multiverse Translation-en [99.2 kB] Get:18 http://ftpmaster.internal utopic/restricted Translation-en [3548 B] Get:19 http://ftpmaster.internal utopic/universe Translation-en [4254 kB] Get:20 http://ftpmaster.internal utopic-security/main i386 Packages [14 B] Get:21 http://ftpmaster.internal utopic-security/restricted i386 Packages [14 B] Get:22 http://ftpmaster.internal utopic-security/universe i386 Packages [14 B] Get:23 http://ftpmaster.internal utopic-security/multiverse i386 Packages [14 B] Get:24 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:25 http://ftpmaster.internal utopic-security/multiverse Translation-en [14 B] Get:26 http://ftpmaster.internal utopic-security/restricted Translation-en [14 B] Get:27 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:28 http://ftpmaster.internal utopic-updates/main i386 Packages [14 B] Get:29 http://ftpmaster.internal utopic-updates/restricted i386 Packages [14 B] Get:30 http://ftpmaster.internal utopic-updates/universe i386 Packages [14 B] Get:31 http://ftpmaster.internal utopic-updates/multiverse i386 Packages [14 B] Get:32 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:33 http://ftpmaster.internal utopic-updates/multiverse Translation-en [14 B] Get:34 http://ftpmaster.internal utopic-updates/restricted Translation-en [14 B] Get:35 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Fetched 13.0 MB in 9s (1367 kB/s) Reading package lists... W: GPG error: http://ppa.launchpad.net utopic Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 8D4F422A65B26E52 Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: init The following packages will be upgraded: gcc-4.9-base init-system-helpers libatomic1 libgcc1 libgomp1 libitm1 libquadmath0 libstdc++6 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 649 kB of archives. After this operation, 33.8 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main init i386 1.20 [3494 B] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libitm1 i386 4.9.1-2ubuntu2 [32.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libgomp1 i386 4.9.1-2ubuntu2 [39.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.9-base i386 4.9.1-2ubuntu2 [15.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++6 i386 4.9.1-2ubuntu2 [292 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libquadmath0 i386 4.9.1-2ubuntu2 [195 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libatomic1 i386 4.9.1-2ubuntu2 [10.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libgcc1 i386 1:4.9.1-2ubuntu2 [48.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.20 [12.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 649 kB in 0s (8950 kB/s) Selecting previously unselected package init. (Reading database ... 11914 files and directories currently installed.) Preparing to unpack .../archives/init_1.20_i386.deb ... Unpacking init (1.20) ... Setting up init (1.20) ... (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libitm1_4.9.1-2ubuntu2_i386.deb ... Unpacking libitm1:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Preparing to unpack .../libgomp1_4.9.1-2ubuntu2_i386.deb ... Unpacking libgomp1:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9.1-2ubuntu2_i386.deb ... Unpacking gcc-4.9-base:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Setting up gcc-4.9-base:i386 (4.9.1-2ubuntu2) ... (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-2ubuntu2_i386.deb ... Unpacking libstdc++6:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Preparing to unpack .../libgcc1_1%3a4.9.1-2ubuntu2_i386.deb ... Unpacking libgcc1:i386 (1:4.9.1-2ubuntu2) over (1:4.9.1-1ubuntu3) ... Setting up libgcc1:i386 (1:4.9.1-2ubuntu2) ... Setting up libstdc++6:i386 (4.9.1-2ubuntu2) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libquadmath0_4.9.1-2ubuntu2_i386.deb ... Unpacking libquadmath0:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Preparing to unpack .../libatomic1_4.9.1-2ubuntu2_i386.deb ... Unpacking libatomic1:i386 (4.9.1-2ubuntu2) over (4.9.1-1ubuntu3) ... Preparing to unpack .../init-system-helpers_1.20_all.deb ... Unpacking init-system-helpers (1.20) over (1.19) ... Setting up init-system-helpers (1.20) ... Setting up libitm1:i386 (4.9.1-2ubuntu2) ... Setting up libgomp1:i386 (4.9.1-2ubuntu2) ... Setting up libquadmath0:i386 (4.9.1-2ubuntu2) ... Setting up libatomic1:i386 (4.9.1-2ubuntu2) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6214857', 'i386', 'utopic', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic', '-A', '--purpose=PPA', '--architecture=i386', '--comp=main', 'moose_3.0-0~2919~ubuntu14.10.1.dsc'] Initiating build PACKAGEBUILD-6214857 with 2 jobs across 2 processor cores. Kernel reported to sbuild: 2.6.24-32-xen #1 SMP Mon Dec 3 16:12:25 UTC 2012 i686 Automatic build of moose_3.0-0~2919~ubuntu14.10.1 on rhenium by sbuild/i386 1.170.5 Build started at 20140726-1517 ****************************************************************************** moose_3.0-0~2919~ubuntu14.10.1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8.0.0), cdbs, devscripts, libgsl0-dev (>= 1.16), cmake, libhdf5-dev, python-dev, python-numpy, python-setuptools, libopenmpi-dev Checking for already installed source dependencies... debhelper: missing cdbs: missing devscripts: missing libgsl0-dev: missing cmake: missing libhdf5-dev: missing python-dev: missing python-numpy: missing python-setuptools: missing libopenmpi-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs devscripts libgsl0-dev cmake libhdf5-dev python-dev python-numpy python-setuptools libopenmpi-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils cmake-data dh-apparmor dh-python dh-translations file gettext gettext-base groff-base hdf5-helpers intltool intltool-debian libarchive13 libasprintf0c2 libblas3 libcr0 libcroco3 libcurl3 libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libgfortran3 libglib2.0-0 libgsl0ldbl libhdf5-7 libhdf5-cpp-7 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libio-html-perl libio-socket-ssl-perl libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack3 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic1 libmpdec2 libnet-http-perl libnet-ssleay-perl libnuma1 libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libsigsegv2 libtorque2 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 libxml2-dev m4 man-db mime-support netbase openmpi-common po-debconf python python-minimal python-pkg-resources python-scour python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.4 python3.4-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation codeblocks eclipse dh-make bsd-mailx mailx cvs-buildpackage devscripts-el gnuplot libauthen-sasl-perl libfile-desktopentry-perl libnet-smtp-ssl-perl libterm-size-perl libyaml-syck-perl mutt ssh-client svn-buildpackage w3m debian-keyring equivs libsoap-lite-perl apparmor-easyprof gettext-doc groff lrzip blcr-dkms gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html libhdf5-doc libdata-dump-perl libhwloc-contrib-plugins libcrypt-ssleay-perl libauthen-ntlm-perl pkg-config less www-browser libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python-distribute python-distribute-doc python-rsvg python-cairo python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.4-venv python3.4-doc Recommended packages: at dctrl-tools dput dupload libdistro-info-perl libjson-perl libparse-debcontrol-perl lintian patchutils python3-debian python3-magic strace unzip wdiff wget curl libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhtml-format-perl libhwloc-plugins libio-socket-inet6-perl libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs cmake cmake-data debhelper devscripts dh-apparmor dh-python dh-translations file gettext gettext-base groff-base hdf5-helpers intltool intltool-debian libarchive13 libasprintf0c2 libblas3 libcr0 libcroco3 libcurl3 libencode-locale-perl libexpat1 libexpat1-dev libfile-listing-perl libgfortran3 libglib2.0-0 libgsl0-dev libgsl0ldbl libhdf5-7 libhdf5-cpp-7 libhdf5-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libio-html-perl libio-socket-ssl-perl libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack3 libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzo2-2 libmagic1 libmpdec2 libnet-http-perl libnet-ssleay-perl libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libsigsegv2 libtorque2 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 libxml2-dev m4 man-db mime-support netbase openmpi-common po-debconf python python-dev python-minimal python-numpy python-pkg-resources python-scour python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-minimal python3.4 python3.4-minimal zlib1g-dev 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 58.5 MB of archives. After this operation, 197 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1 i386 2.1.0-6 [72.3 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 i386 1:5.19-1ubuntu1 [201 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libmpdec2 i386 2.4.0-6 [73.3 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libpython3.4-minimal i386 3.4.1-7 [453 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main mime-support all 3.55ubuntu1 [31.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libpython3.4-stdlib i386 3.4.1-7 [2022 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main python3.4-minimal i386 3.4.1-7 [1337 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 i386 0.18.3.2-1ubuntu1 [6360 B] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 i386 2.41.1-2 [1040 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libnuma1 i386 2.0.9~rc5-1ubuntu2 [20.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libpci3 i386 1:3.2.1-1ubuntu7 [25.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 i386 1.3.0-1 [23.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 i386 2.9.1+dfsg1-3ubuntu7 [558 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main groff-base i386 1.22.2-6 [1034 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils i386 9.0.5ubuntu1 [197 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main man-db i386 2.6.7.1-1 [851 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main liblzo2-2 i386 2.06-1.2ubuntu2 [50.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libarchive13 i386 3.1.2-7ubuntu2 [275 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 i386 0.6.8-2ubuntu1 [81.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libcurl3 i386 7.36.0-2ubuntu1 [174 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libgfortran3 i386 4.9.1-2ubuntu2 [242 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/universe libhdf5-7 i386 1.8.12+docs-1.1ubuntu1 [887 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libjpeg-turbo8 i386 1.3.0-0ubuntu2 [107 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libltdl7 i386 2.4.2-1.7ubuntu1 [35.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-minimal i386 2.7.8-2 [308 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-stdlib i386 2.7.8-2 [1843 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7 i386 2.7.8-2 [983 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1-dev i386 2.1.0-6 [112 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-dev i386 2.7.8-2 [21.8 MB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libsigsegv2 i386 2.10-4 [14.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 i386 0.9.3-5ubuntu3 [272 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main python2.7-minimal i386 2.7.8-2 [1123 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc5 i386 1.8-1ubuntu1 [76.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main python3.4 i386 3.4.1-7 [168 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main python3-minimal i386 3.4.1-1 [23.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main libpython3-stdlib i386 3.4.1-1 [7030 B] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main python3 i386 3.4.1-1 [8792 B] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main dh-python all 1.20140511-1 [52.2 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main file i386 1:5.19-1ubuntu1 [19.7 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main netbase all 5.2 [12.9 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base i386 0.18.3.2-1ubuntu1 [47.6 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main m4 i386 1.4.17-4 [190 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main autoconf all 2.69-7 [322 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main autotools-dev all 20140510.1 [39.7 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main automake all 1:1.14.1-2ubuntu1 [510 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main gettext i386 0.18.3.2-1ubuntu1 [816 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu3 [207 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.96~2541-0ubuntu1 [11.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140613ubuntu1 [606 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main liburi-perl all 1.64-1 [84.1 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic/main libfile-listing-perl all 6.04-1 [9774 B] Get:55 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-parser-perl i386 3.71-1build1 [97.8 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-tree-perl all 5.03-1 [215 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main libio-html-perl all 1.001-1 [14.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main libnet-ssleay-perl i386 1.65-1 [254 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main libnet-http-perl all 6.06-1 [24.2 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main libwww-perl all 6.07-1 [146 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main libxml-parser-perl i386 2.41-2 [200 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main intltool all 0.50.2-2 [52.0 kB] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main dh-translations all 121 [21.6 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main python2.7 i386 2.7.8-2 [200 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main python-minimal i386 2.7.8-1 [28.2 kB] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libpython-stdlib i386 2.7.8-1 [7720 B] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main python i386 2.7.8-1 [138 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main python-scour all 0.26-3build1 [40.5 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic/main cdbs all 0.4.125ubuntu1 [43.5 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic/main cmake-data all 2.8.12.2-0ubuntu5 [678 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main cmake i386 2.8.12.2-0ubuntu5 [2634 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main devscripts i386 2.14.5 [805 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic/universe hdf5-helpers i386 1.8.12+docs-1.1ubuntu1 [12.5 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic/main libblas3 i386 1.2.20110419-7 [183 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/universe libcr0 i386 0.8.5-2.1 [18.3 kB] Get:84 http://ftpmaster.internal/ubuntu/ utopic/main libgsl0ldbl i386 1.16+dfsg-2 [734 kB] Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libgsl0-dev i386 1.16+dfsg-2 [867 kB] Get:86 http://ftpmaster.internal/ubuntu/ utopic/universe libhdf5-cpp-7 i386 1.8.12+docs-1.1ubuntu1 [85.2 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev i386 1:1.2.8.dfsg-1ubuntu1 [181 kB] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main libjpeg-turbo8-dev i386 1.3.0-0ubuntu2 [247 kB] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main libjpeg8-dev i386 8c-2ubuntu8 [1546 B] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main libjpeg-dev i386 8c-2ubuntu8 [1544 B] Get:92 http://ftpmaster.internal/ubuntu/ utopic/universe libhdf5-dev i386 1.8.12+docs-1.1ubuntu1 [4386 kB] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main liblapack3 i386 3.5.0-2ubuntu1 [1496 kB] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main libpci-dev i386 1:3.2.1-1ubuntu7 [43.8 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main libpython-dev i386 2.7.8-1 [7804 B] Get:96 http://ftpmaster.internal/ubuntu/ utopic/universe libtorque2 i386 2.4.16+dfsg-1.4ubuntu1 [72.8 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic/main libxml2-dev i386 2.9.1+dfsg1-3ubuntu7 [629 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/universe openmpi-common all 1.6.5-8 [101 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main python2.7-dev i386 2.7.8-2 [282 kB] Get:100 http://ftpmaster.internal/ubuntu/ utopic/main python-dev i386 2.7.8-1 [1214 B] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main python-numpy i386 1:1.8.1-1ubuntu1 [1586 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main python-pkg-resources all 5.4.1-1 [62.0 kB] Get:103 http://ftpmaster.internal/ubuntu/ utopic/main python-setuptools all 5.4.1-1 [218 kB] Get:104 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc-dev i386 1.8-1ubuntu1 [129 kB] Get:105 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs1 i386 1.1.7-1ubuntu1 [23.7 kB] Get:106 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs-dev i386 1.1.7-1ubuntu1 [67.7 kB] Get:107 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi1.6 i386 1.6.5-8 [1342 kB] Get:108 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi-dev i386 1.6.5-8 [378 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.5 MB in 4s (13.2 MB/s) Selecting previously unselected package libexpat1:i386. (Reading database ... 11917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6_i386.deb ... Unpacking libexpat1:i386 (2.1.0-6) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1_i386.deb ... Unpacking libmagic1:i386 (1:5.19-1ubuntu1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.0-6_i386.deb ... Unpacking libmpdec2:i386 (2.4.0-6) ... Selecting previously unselected package libpython3.4-minimal:i386. Preparing to unpack .../libpython3.4-minimal_3.4.1-7_i386.deb ... Unpacking libpython3.4-minimal:i386 (3.4.1-7) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.55ubuntu1_all.deb ... Unpacking mime-support (3.55ubuntu1) ... Selecting previously unselected package libpython3.4-stdlib:i386. Preparing to unpack .../libpython3.4-stdlib_3.4.1-7_i386.deb ... Unpacking libpython3.4-stdlib:i386 (3.4.1-7) ... Selecting previously unselected package python3.4-minimal. Preparing to unpack .../python3.4-minimal_3.4.1-7_i386.deb ... Unpacking python3.4-minimal (3.4.1-7) ... Selecting previously unselected package libasprintf0c2:i386. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_i386.deb ... Unpacking libasprintf0c2:i386 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../libglib2.0-0_2.41.1-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.41.1-2) ... Selecting previously unselected package libnuma1:i386. Preparing to unpack .../libnuma1_2.0.9~rc5-1ubuntu2_i386.deb ... Unpacking libnuma1:i386 (2.0.9~rc5-1ubuntu2) ... Selecting previously unselected package libpci3:i386. Preparing to unpack .../libpci3_1%3a3.2.1-1ubuntu7_i386.deb ... Unpacking libpci3:i386 (1:3.2.1-1ubuntu7) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.3.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.3.0-1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu7_i386.deb ... Unpacking libxml2:i386 (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-6_i386.deb ... Unpacking groff-base (1.22.2-6) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_i386.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package liblzo2-2:i386. Preparing to unpack .../liblzo2-2_2.06-1.2ubuntu2_i386.deb ... Unpacking liblzo2-2:i386 (2.06-1.2ubuntu2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../libarchive13_3.1.2-7ubuntu2_i386.deb ... Unpacking libarchive13:i386 (3.1.2-7ubuntu2) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_i386.deb ... Unpacking libcroco3:i386 (0.6.8-2ubuntu1) ... Selecting previously unselected package libcurl3:i386. Preparing to unpack .../libcurl3_7.36.0-2ubuntu1_i386.deb ... Unpacking libcurl3:i386 (7.36.0-2ubuntu1) ... Selecting previously unselected package libgfortran3:i386. Preparing to unpack .../libgfortran3_4.9.1-2ubuntu2_i386.deb ... Unpacking libgfortran3:i386 (4.9.1-2ubuntu2) ... Selecting previously unselected package libhdf5-7:i386. Preparing to unpack .../libhdf5-7_1.8.12+docs-1.1ubuntu1_i386.deb ... Unpacking libhdf5-7:i386 (1.8.12+docs-1.1ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:i386. Preparing to unpack .../libjpeg-turbo8_1.3.0-0ubuntu2_i386.deb ... Unpacking libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../libltdl7_2.4.2-1.7ubuntu1_i386.deb ... Unpacking libltdl7:i386 (2.4.2-1.7ubuntu1) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../libpython2.7-minimal_2.7.8-2_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.8-2) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../libpython2.7-stdlib_2.7.8-2_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.8-2) ... Selecting previously unselected package libpython2.7:i386. Preparing to unpack .../libpython2.7_2.7.8-2_i386.deb ... Unpacking libpython2.7:i386 (2.7.8-2) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../libexpat1-dev_2.1.0-6_i386.deb ... Unpacking libexpat1-dev:i386 (2.1.0-6) ... Selecting previously unselected package libpython2.7-dev:i386. Preparing to unpack .../libpython2.7-dev_2.7.8-2_i386.deb ... Unpacking libpython2.7-dev:i386 (2.7.8-2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../libsigsegv2_2.10-4_i386.deb ... Unpacking libsigsegv2:i386 (2.10-4) ... Selecting previously unselected package libunistring0:i386. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_i386.deb ... Unpacking libunistring0:i386 (0.9.3-5ubuntu3) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.8-2_i386.deb ... Unpacking python2.7-minimal (2.7.8-2) ... Selecting previously unselected package libhwloc5:i386. Preparing to unpack .../libhwloc5_1.8-1ubuntu1_i386.deb ... Unpacking libhwloc5:i386 (1.8-1ubuntu1) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4.1-7_i386.deb ... Unpacking python3.4 (3.4.1-7) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4.1-1_i386.deb ... Unpacking python3-minimal (3.4.1-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.4.1-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.4.1-1) ... Selecting previously unselected package python3. Preparing to unpack .../python3_3.4.1-1_i386.deb ... Unpacking python3 (3.4.1-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_1.20140511-1_all.deb ... Unpacking dh-python (1.20140511-1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.19-1ubuntu1_i386.deb ... Unpacking file (1:5.19-1ubuntu1) ... Selecting previously unselected package netbase. Preparing to unpack .../archives/netbase_5.2_all.deb ... Unpacking netbase (5.2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_i386.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_i386.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-7_all.deb ... Unpacking autoconf (2.69-7) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140510.1_all.deb ... Unpacking autotools-dev (20140510.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.14.1-2ubuntu1_all.deb ... Unpacking automake (1:1.14.1-2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.2-1ubuntu1_i386.deb ... Unpacking gettext (0.18.3.2-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.96~2541-0ubuntu1_all.deb ... Unpacking dh-apparmor (2.8.96~2541-0ubuntu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20140613ubuntu1_all.deb ... Unpacking debhelper (9.20140613ubuntu1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.64-1_all.deb ... Unpacking liburi-perl (1.64-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1build1_i386.deb ... Unpacking libhtml-parser-perl (3.71-1build1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.001-1_all.deb ... Unpacking libio-html-perl (1.001-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.00-2_all.deb ... Unpacking libhttp-cookies-perl (6.00-2) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.65-1_i386.deb ... Unpacking libnet-ssleay-perl (1.65-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_1.965-1ubuntu1_all.deb ... Unpacking libio-socket-ssl-perl (1.965-1ubuntu1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.06-1_all.deb ... Unpacking libnet-http-perl (6.06-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.06-2_all.deb ... Unpacking liblwp-protocol-https-perl (6.06-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.07-1_all.deb ... Unpacking libwww-perl (6.07-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-2_i386.deb ... Unpacking libxml-parser-perl (2.41-2) ... Selecting previously unselected package intltool. Preparing to unpack .../intltool_0.50.2-2_all.deb ... Unpacking intltool (0.50.2-2) ... Selecting previously unselected package dh-translations. Preparing to unpack .../dh-translations_121_all.deb ... Unpacking dh-translations (121) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.8-2_i386.deb ... Unpacking python2.7 (2.7.8-2) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.8-1_i386.deb ... Unpacking python-minimal (2.7.8-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../libpython-stdlib_2.7.8-1_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.8-1) ... Selecting previously unselected package python. Preparing to unpack .../python_2.7.8-1_i386.deb ... Unpacking python (2.7.8-1) ... Selecting previously unselected package python-scour. Preparing to unpack .../python-scour_0.26-3build1_all.deb ... Unpacking python-scour (0.26-3build1) ... Selecting previously unselected package cdbs. Preparing to unpack .../cdbs_0.4.125ubuntu1_all.deb ... Unpacking cdbs (0.4.125ubuntu1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../cmake-data_2.8.12.2-0ubuntu5_all.deb ... Unpacking cmake-data (2.8.12.2-0ubuntu5) ... Selecting previously unselected package cmake. Preparing to unpack .../cmake_2.8.12.2-0ubuntu5_i386.deb ... Unpacking cmake (2.8.12.2-0ubuntu5) ... Selecting previously unselected package devscripts. Preparing to unpack .../devscripts_2.14.5_i386.deb ... Unpacking devscripts (2.14.5) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../hdf5-helpers_1.8.12+docs-1.1ubuntu1_i386.deb ... Unpacking hdf5-helpers (1.8.12+docs-1.1ubuntu1) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-7_i386.deb ... Unpacking libblas3 (1.2.20110419-7) ... Selecting previously unselected package libcr0. Preparing to unpack .../libcr0_0.8.5-2.1_i386.deb ... Unpacking libcr0 (0.8.5-2.1) ... Selecting previously unselected package libgsl0ldbl. Preparing to unpack .../libgsl0ldbl_1.16+dfsg-2_i386.deb ... Unpacking libgsl0ldbl (1.16+dfsg-2) ... Selecting previously unselected package libgsl0-dev. Preparing to unpack .../libgsl0-dev_1.16+dfsg-2_i386.deb ... Unpacking libgsl0-dev (1.16+dfsg-2) ... Selecting previously unselected package libhdf5-cpp-7:i386. Preparing to unpack .../libhdf5-cpp-7_1.8.12+docs-1.1ubuntu1_i386.deb ... Unpacking libhdf5-cpp-7:i386 (1.8.12+docs-1.1ubuntu1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.8.dfsg-1ubuntu1) ... Selecting previously unselected package libjpeg-turbo8-dev:i386. Preparing to unpack .../libjpeg-turbo8-dev_1.3.0-0ubuntu2_i386.deb ... Unpacking libjpeg-turbo8-dev:i386 (1.3.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:i386. Preparing to unpack .../libjpeg8_8c-2ubuntu8_i386.deb ... Unpacking libjpeg8:i386 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg8-dev:i386. Preparing to unpack .../libjpeg8-dev_8c-2ubuntu8_i386.deb ... Unpacking libjpeg8-dev:i386 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:i386. Preparing to unpack .../libjpeg-dev_8c-2ubuntu8_i386.deb ... Unpacking libjpeg-dev:i386 (8c-2ubuntu8) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../libhdf5-dev_1.8.12+docs-1.1ubuntu1_i386.deb ... Unpacking libhdf5-dev (1.8.12+docs-1.1ubuntu1) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-2ubuntu1_i386.deb ... Unpacking liblapack3 (3.5.0-2ubuntu1) ... Selecting previously unselected package libpci-dev. Preparing to unpack .../libpci-dev_1%3a3.2.1-1ubuntu7_i386.deb ... Unpacking libpci-dev (1:3.2.1-1ubuntu7) ... Selecting previously unselected package libpython-dev:i386. Preparing to unpack .../libpython-dev_2.7.8-1_i386.deb ... Unpacking libpython-dev:i386 (2.7.8-1) ... Selecting previously unselected package libtorque2. Preparing to unpack .../libtorque2_2.4.16+dfsg-1.4ubuntu1_i386.deb ... Unpacking libtorque2 (2.4.16+dfsg-1.4ubuntu1) ... Selecting previously unselected package libxml2-dev:i386. Preparing to unpack .../libxml2-dev_2.9.1+dfsg1-3ubuntu7_i386.deb ... Unpacking libxml2-dev:i386 (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-8_all.deb ... Unpacking openmpi-common (1.6.5-8) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../python2.7-dev_2.7.8-2_i386.deb ... Unpacking python2.7-dev (2.7.8-2) ... Selecting previously unselected package python-dev. Preparing to unpack .../python-dev_2.7.8-1_i386.deb ... Unpacking python-dev (2.7.8-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../python-numpy_1%3a1.8.1-1ubuntu1_i386.deb ... Unpacking python-numpy (1:1.8.1-1ubuntu1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../python-pkg-resources_5.4.1-1_all.deb ... Unpacking python-pkg-resources (5.4.1-1) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../python-setuptools_5.4.1-1_all.deb ... Unpacking python-setuptools (5.4.1-1) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../libhwloc-dev_1.8-1ubuntu1_i386.deb ... Unpacking libhwloc-dev:i386 (1.8-1ubuntu1) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.7-1ubuntu1_i386.deb ... Unpacking libibverbs1 (1.1.7-1ubuntu1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../libibverbs-dev_1.1.7-1ubuntu1_i386.deb ... Unpacking libibverbs-dev (1.1.7-1ubuntu1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-8_i386.deb ... Unpacking libopenmpi1.6 (1.6.5-8) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../libopenmpi-dev_1.6.5-8_i386.deb ... Unpacking libopenmpi-dev (1.6.5-8) ... Setting up libexpat1:i386 (2.1.0-6) ... Setting up libmagic1:i386 (1:5.19-1ubuntu1) ... Setting up libmpdec2:i386 (2.4.0-6) ... Setting up libpython3.4-minimal:i386 (3.4.1-7) ... Setting up mime-support (3.55ubuntu1) ... Setting up libpython3.4-stdlib:i386 (3.4.1-7) ... Setting up python3.4-minimal (3.4.1-7) ... Setting up libasprintf0c2:i386 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:i386 (2.41.1-2) ... No schema files found: doing nothing. Setting up libnuma1:i386 (2.0.9~rc5-1ubuntu2) ... Setting up libpci3:i386 (1:3.2.1-1ubuntu7) ... Setting up libpipeline1:i386 (1.3.0-1) ... Setting up libxml2:i386 (2.9.1+dfsg1-3ubuntu7) ... Setting up groff-base (1.22.2-6) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:i386 (2.06-1.2ubuntu2) ... Setting up libarchive13:i386 (3.1.2-7ubuntu2) ... Setting up libcroco3:i386 (0.6.8-2ubuntu1) ... Setting up libcurl3:i386 (7.36.0-2ubuntu1) ... Setting up libgfortran3:i386 (4.9.1-2ubuntu2) ... Setting up libhdf5-7:i386 (1.8.12+docs-1.1ubuntu1) ... Setting up libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Setting up libltdl7:i386 (2.4.2-1.7ubuntu1) ... Setting up libpython2.7-minimal:i386 (2.7.8-2) ... Setting up libpython2.7-stdlib:i386 (2.7.8-2) ... Setting up libpython2.7:i386 (2.7.8-2) ... Setting up libexpat1-dev:i386 (2.1.0-6) ... Setting up libpython2.7-dev:i386 (2.7.8-2) ... Setting up libsigsegv2:i386 (2.10-4) ... Setting up libunistring0:i386 (0.9.3-5ubuntu3) ... Setting up python2.7-minimal (2.7.8-2) ... Linking and byte-compiling packages for runtime python2.7... Setting up libhwloc5:i386 (1.8-1ubuntu1) ... Setting up python3.4 (3.4.1-7) ... Setting up python3-minimal (3.4.1-1) ... Setting up libpython3-stdlib:i386 (3.4.1-1) ... Setting up file (1:5.19-1ubuntu1) ... Setting up netbase (5.2) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-7) ... Setting up autotools-dev (20140510.1) ... Setting up automake (1:1.14.1-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.96~2541-0ubuntu1) ... Setting up debhelper (9.20140613ubuntu1) ... Setting up liburi-perl (1.64-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python2.7 (2.7.8-2) ... Setting up python-minimal (2.7.8-1) ... Setting up libpython-stdlib:i386 (2.7.8-1) ... Setting up python (2.7.8-1) ... Setting up python-scour (0.26-3build1) ... Setting up cmake-data (2.8.12.2-0ubuntu5) ... Setting up cmake (2.8.12.2-0ubuntu5) ... Setting up hdf5-helpers (1.8.12+docs-1.1ubuntu1) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libcr0 (0.8.5-2.1) ... Setting up libgsl0ldbl (1.16+dfsg-2) ... Setting up libgsl0-dev (1.16+dfsg-2) ... Setting up libhdf5-cpp-7:i386 (1.8.12+docs-1.1ubuntu1) ... Setting up zlib1g-dev:i386 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libjpeg-turbo8-dev:i386 (1.3.0-0ubuntu2) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ... Setting up libjpeg-dev:i386 (8c-2ubuntu8) ... Setting up libhdf5-dev (1.8.12+docs-1.1ubuntu1) ... Setting up liblapack3 (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpci-dev (1:3.2.1-1ubuntu7) ... Setting up libpython-dev:i386 (2.7.8-1) ... Setting up libtorque2 (2.4.16+dfsg-1.4ubuntu1) ... Setting up libxml2-dev:i386 (2.9.1+dfsg1-3ubuntu7) ... Setting up openmpi-common (1.6.5-8) ... Setting up python2.7-dev (2.7.8-2) ... Setting up python-dev (2.7.8-1) ... Setting up python-numpy (1:1.8.1-1ubuntu1) ... Setting up python-pkg-resources (5.4.1-1) ... Setting up python-setuptools (5.4.1-1) ... Setting up libhwloc-dev:i386 (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.7-1ubuntu1) ... Setting up libibverbs-dev (1.1.7-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up python3 (3.4.1-1) ... running python rtupdate hooks for python3.4... running python post-rtupdate hooks for python3.4... Setting up dh-python (1.20140511-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.07-1) ... Setting up libxml-parser-perl (2.41-2) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.125ubuntu1) ... Setting up devscripts (2.14.5) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-4ubuntu1 make_4.0-8 dpkg-dev_1.17.10ubuntu1 gcc-4.8_4.8.3-5ubuntu2 g++-4.8_4.8.3-5ubuntu2 binutils_2.24.51.20140709-1ubuntu1 libstdc++-4.8-dev_4.8.3-5ubuntu2 libstdc++6_4.9.1-2ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Native dpkg-source: warning: extracting unsigned source package (moose_3.0-0~2919~ubuntu14.10.1.dsc) dpkg-source: info: extracting moose in moose-3.0 dpkg-source: info: unpacking moose_3.0-0~2919~ubuntu14.10.1.tar.xz dpkg-buildpackage: source package moose dpkg-buildpackage: source version 3.0-0~2919~ubuntu14.10.1 dpkg-buildpackage: source distribution utopic dpkg-source --before-build moose-3.0 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules rmdir obj-i686-linux-gnu rmdir: failed to remove 'obj-i686-linux-gnu': No such file or directory /usr/share/cdbs/1/rules/buildcore.mk:46: recipe for target 'cleanbuilddir' failed make: [cleanbuilddir] Error 1 (ignored) rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C obj-i686-linux-gnu -k clean make[1]: *** obj-i686-linux-gnu: No such file or directory. Stop. /usr/share/cdbs/1/class/makefile.mk:55: recipe for target 'makefile-clean' failed make: [makefile-clean] Error 2 (ignored) rm -rf obj-i686-linux-gnu dh_clean rm -rf debian/python-module-stampdir find "/build/buildd/moose-3.0" -name '*.py[co]' -delete find "/build/buildd/moose-3.0" -name __pycache__ -type d -empty -delete find "/build/buildd/moose-3.0" -prune -name '*.egg-info' -exec rm -rf '{}' ';' debian/rules build test -x debian/rules mkdir -p "obj-i686-linux-gnu" /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_PYTHON_BUILD_ARGS is deprecated since 0.4.89 mkdir -p debian/python-module-stampdir cd obj-i686-linux-gnu && cmake /build/buildd/moose-3.0/. -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_C_COMPILER:FILEPATH="cc" -DCMAKE_CXX_COMPILER:FILEPATH="g++" -DCMAKE_C_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -D_FORTIFY_SOURCE=2" -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" -DCMAKE_MODULE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" -DCMAKE_SHARED_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" -- The C compiler identification is GNU 4.8.3 -- The CXX compiler identification is GNU 4.8.3 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done ++ Unit testing enabled. ++ Moose will print statistics during simulation /usr -- Using GSL from /usr -- Found: /usr/lib/i386-linux-gnu/libhdf5.so -- -- Could NOT find LIBSBML (missing: LIBSBML_LIBRARY LIBSBML_INCLUDE_DIR) -- Could NOT find Curses (missing: CURSES_LIBRARY CURSES_INCLUDE_PATH) -- Could NOT find Readline (missing: Readline_INCLUDE_DIR Readline_LIBRARY) -- Found PythonInterp: /usr/bin/python (found version "2.7.8") -- Found NumPy: version "1.8.1" /usr/lib/python2.7/dist-packages/numpy/core/include -- Found PythonDev: /usr/bin/python-config ++ PYTHONPATH is set to /build/buildd/moose-3.0/python -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/moose-3.0/obj-i686-linux-gnu /usr/bin/make -C obj-i686-linux-gnu make[1]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[2]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target kinetics make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 1%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o [ 2%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o [ 2%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o [ 3%] Building CXX object kinetics/CMakeFiles/kinetics.dir/FuncPool.cpp.o [ 3%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o [ 4%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o [ 4%] Building CXX object kinetics/CMakeFiles/kinetics.dir/EnzBase.cpp.o [ 5%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o [ 5%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o [ 6%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MMenz.cpp.o [ 6%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o [ 7%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o [ 7%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o [ 8%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o [ 8%] Building CXX object kinetics/CMakeFiles/kinetics.dir/SumTotalTerm.cpp.o [ 9%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MathFuncTerm.cpp.o [ 9%] Building CXX object kinetics/CMakeFiles/kinetics.dir/FuncBase.cpp.o [ 10%] Building CXX object kinetics/CMakeFiles/kinetics.dir/MathFunc.cpp.o [ 10%] Building CXX object kinetics/CMakeFiles/kinetics.dir/SumFunc.cpp.o [ 11%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o [ 11%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o Linking CXX static library libkinetics.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 11%] Built target kinetics make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target biophysics make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 12%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeRingBuffer.cpp.o [ 12%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynHandler.cpp.o [ 13%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o [ 13%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Synapse.cpp.o [ 14%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SpikeGen.cpp.o [ 14%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o [ 15%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o [ 15%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o [ 16%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o [ 16%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o [ 17%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o [ 17%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o [ 18%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate2D.cpp.o [ 18%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o [ 19%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o [ 20%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConc.cpp.o [ 20%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o [ 21%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o [ 21%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o [ 22%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChanBase.cpp.o [ 22%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o [ 23%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o [ 23%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o [ 24%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o [ 24%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o [ 25%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o [ 25%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o [ 26%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o [ 26%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovGslSolver.cpp.o [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o /build/buildd/moose-3.0/biophysics/MatrixOps.cpp: In function 'void matInv(Matrix*, std::vector*, Matrix*)': /build/buildd/moose-3.0/biophysics/MatrixOps.cpp:350:9: warning: variable 'pivot' set but not used [-Wunused-but-set-variable] double pivot, rowMultiplier1, rowMultiplier2; ^ /build/buildd/moose-3.0/biophysics/MatrixOps.cpp: In function 'void matMatAdd(Matrix*, Matrix*, double, double, unsigned int)': /build/buildd/moose-3.0/biophysics/MatrixOps.cpp:128:10: warning: 'C' may be used uninitialized in this function [-Wmaybe-uninitialized] Matrix *C; ^ [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o /build/buildd/moose-3.0/biophysics/MarkovSolverBase.cpp: In member function 'void MarkovSolverBase::computeState()': /build/buildd/moose-3.0/biophysics/MarkovSolverBase.cpp:444:28: warning: variable 'useLinear' set but not used [-Wunused-but-set-variable] bool useBilinear = false, useLinear = false; ^ [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o /build/buildd/moose-3.0/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': /build/buildd/moose-3.0/biophysics/MarkovSolver.cpp:154:63: warning: 'padeCoeffs' may be used uninitialized in this function [-Wmaybe-uninitialized] matMatAdd( V, QevenPowers[i/2], 1.0, padeCoeffs[i], FIRST ); ^ [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o Linking CXX static library libbiophysics.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 29%] Built target biophysics make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target utility make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 30%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o [ 30%] Building CXX object utility/CMakeFiles/utility.dir/types.cpp.o [ 31%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o [ 31%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o [ 32%] Building CXX object utility/CMakeFiles/utility.dir/Annotator.cpp.o [ 33%] Building CXX object utility/CMakeFiles/utility.dir/Vec.cpp.o Linking CXX static library libutility.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 33%] Built target utility make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target basecode make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 34%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o [ 34%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o [ 35%] Building CXX object basecode/CMakeFiles/basecode.dir/DataElement.cpp.o [ 35%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o [ 36%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o [ 36%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o [ 37%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o [ 37%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o [ 38%] Building CXX object basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o [ 38%] Building CXX object basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o [ 39%] Building CXX object basecode/CMakeFiles/basecode.dir/ValueFinfo.cpp.o [ 39%] Building CXX object basecode/CMakeFiles/basecode.dir/SharedFinfo.cpp.o [ 40%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o [ 40%] Building CXX object basecode/CMakeFiles/basecode.dir/FieldElement.cpp.o [ 41%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o [ 41%] Building CXX object basecode/CMakeFiles/basecode.dir/PrepackedBuffer.cpp.o [ 42%] Building CXX object basecode/CMakeFiles/basecode.dir/ObjId.cpp.o [ 42%] Building CXX object basecode/CMakeFiles/basecode.dir/global.cpp.o [ 43%] Building CXX object basecode/CMakeFiles/basecode.dir/SetGet.cpp.o [ 43%] Building CXX object basecode/CMakeFiles/basecode.dir/OpFuncBase.cpp.o [ 44%] Building CXX object basecode/CMakeFiles/basecode.dir/EpFunc.cpp.o [ 45%] Building CXX object basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o [ 45%] Building CXX object basecode/CMakeFiles/basecode.dir/SparseMatrix.cpp.o [ 46%] Building CXX object basecode/CMakeFiles/basecode.dir/doubleEq.cpp.o [ 46%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o In file included from /build/buildd/moose-3.0/basecode/testAsync.cpp:22:0: /build/buildd/moose-3.0/basecode/SparseMatrix.h: In member function 'void SparseMatrix::reorderColumns(const std::vector&) [with T = unsigned int]': /build/buildd/moose-3.0/basecode/SparseMatrix.h:469:27: warning: 'entry' may be used uninitialized in this function [-Wmaybe-uninitialized] newEntry[q] = entry[j]; ^ /build/buildd/moose-3.0/basecode/SparseMatrix.h: In member function 'void SparseMatrix::reorderColumns(const std::vector&) [with T = int]': /build/buildd/moose-3.0/basecode/SparseMatrix.h:469:27: warning: 'entry' may be used uninitialized in this function [-Wmaybe-uninitialized] Linking CXX static library libbasecode.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 46%] Built target basecode make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target moosepython make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 46%] Building CXX object pymoose/CMakeFiles/moosepython.dir/vec.cpp.o In file included from /usr/include/python2.7/Python.h:80:0, from /build/buildd/moose-3.0/pymoose/vec.cpp:49: /build/buildd/moose-3.0/pymoose/vec.cpp: In function 'PyObject* moose_Id_richCompare(_Id*, PyObject*, int)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/vec.cpp:705:13: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/vec.cpp:707:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ [ 47%] Building CXX object pymoose/CMakeFiles/moosepython.dir/mfield.cpp.o [ 47%] Building CXX object pymoose/CMakeFiles/moosepython.dir/pymooseinit.cpp.o [ 48%] Building CXX object pymoose/CMakeFiles/moosepython.dir/melement.cpp.o In file included from /usr/include/python2.7/Python.h:80:0, from /build/buildd/moose-3.0/pymoose/melement.cpp:49: /build/buildd/moose-3.0/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_getattro(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/melement.cpp:642:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_True); ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/melement.cpp:645:21: note: in expansion of macro 'Py_INCREF' Py_INCREF(Py_False); ^ /build/buildd/moose-3.0/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_setDestField(_ObjId*, PyObject*)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1382:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1384:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/melement.cpp: In function 'PyObject* setDestFinfo(ObjId, std::string, PyObject*, std::string)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1521:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1523:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/melement.cpp: In function 'PyObject* moose_ObjId_richcompare(_ObjId*, PyObject*, int)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1825:17: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1827:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1849:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1851:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1854:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1856:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1859:17: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/melement.cpp:1861:13: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ In file included from /usr/include/python2.7/Python.h:87:0, from /build/buildd/moose-3.0/pymoose/melement.cpp:49: /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1485:84: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = short int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1488:86: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = long int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1491:85: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = unsigned int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1494:93: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = long unsigned int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1497:94: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = float; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1500:86: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = double; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1503:87: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = std::basic_string; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1506:87: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = Id; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1509:83: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* _set_vector_destFinfo(ObjId, std::string, PyObject*, char) [with A = ObjId; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1512:86: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:571:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:573:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = float; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1540:86: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = double; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1542:80: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = std::basic_string; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1547:84: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1555:83: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = long int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1557:79: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = unsigned int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1566:101: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = long unsigned int; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1568:88: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = Id; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1590:73: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = ObjId; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1611:76: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.h: In instantiation of 'PyObject* setDestFinfo1(ObjId, std::string, PyObject*, char, A) [with A = char; PyObject = _object; std::string = std::basic_string]': /build/buildd/moose-3.0/pymoose/melement.cpp:1624:78: required from here /usr/include/python2.7/boolobject.h:24:46: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_True ((PyObject *) &_Py_TrueStruct) ^ /usr/include/python2.7/boolobject.h:27:51: note: in expansion of macro 'Py_True' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:689:9: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/boolobject.h:23:47: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] #define Py_False ((PyObject *) &_Py_ZeroStruct) ^ /usr/include/python2.7/boolobject.h:28:53: note: in expansion of macro 'Py_False' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.h:691:9: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ [ 48%] Building CXX object pymoose/CMakeFiles/moosepython.dir/test_moosemodule.cpp.o Linking CXX static library libmoosepython.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 48%] Built target moosepython make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target msg make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 49%] Building CXX object msg/CMakeFiles/msg.dir/Msg.cpp.o [ 49%] Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o [ 50%] Building CXX object msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o [ 50%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneMsg.cpp.o [ 51%] Building CXX object msg/CMakeFiles/msg.dir/SingleMsg.cpp.o [ 51%] Building CXX object msg/CMakeFiles/msg.dir/SparseMsg.cpp.o [ 52%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneDataIndexMsg.cpp.o [ 52%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o Linking CXX static library libmsg.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 52%] Built target msg make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target shell make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 52%] Building CXX object shell/CMakeFiles/shell.dir/Shell.cpp.o /build/buildd/moose-3.0/shell/Shell.cpp: In member function 'void Shell::innerCreate(std::string, ObjId, Id, std::string, const NodeBalance&, unsigned int)': /build/buildd/moose-3.0/shell/Shell.cpp:741:16: warning: 'ret' may be used uninitialized in this function [-Wmaybe-uninitialized] assert( ret ); ^ [ 53%] Building CXX object shell/CMakeFiles/shell.dir/ShellCopy.cpp.o [ 53%] Building CXX object shell/CMakeFiles/shell.dir/ShellThreads.cpp.o [ 54%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o [ 54%] Building CXX object shell/CMakeFiles/shell.dir/SaveModels.cpp.o [ 55%] Building CXX object shell/CMakeFiles/shell.dir/Neutral.cpp.o [ 55%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o [ 56%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o Linking CXX static library libshell.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 56%] Built target shell make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target randnum make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 57%] Building CXX object randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o Linking CXX static library librandnum.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 57%] Built target randnum make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target scheduling make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 57%] Building CXX object scheduling/CMakeFiles/scheduling.dir/Clock.cpp.o [ 58%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o Linking CXX static library libscheduling.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 58%] Built target scheduling make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target moose_builtins make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 58%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o [ 59%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o [ 59%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o [ 60%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o [ 60%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o [ 61%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o [ 61%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o [ 62%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o [ 62%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o [ 63%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o [ 63%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o [ 64%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o [ 64%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o Linking CXX static library libmoose_builtins.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 64%] Built target moose_builtins make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target muparser make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 65%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserBase.cpp.o [ 65%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserBytecode.cpp.o [ 66%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserTokenReader.cpp.o [ 66%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParser.cpp.o [ 67%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserError.cpp.o [ 67%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserTest.cpp.o [ 68%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserDLL.cpp.o [ 69%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserCallback.cpp.o [ 69%] Building CXX object external/muparser/CMakeFiles/muparser.dir/muParserInt.cpp.o Linking CXX static library libmuparser.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Built target muparser make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target tinyxml make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Building CXX object external/tinyxml/CMakeFiles/tinyxml.dir/tinyxml2.cpp.o Linking CXX static library libtinyxml.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Built target tinyxml make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target mesh make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o [ 70%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o [ 70%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o [ 71%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o [ 71%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o [ 72%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o [ 73%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o [ 73%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o [ 74%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o [ 74%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o [ 75%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o [ 75%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o Linking CXX static library libmesh.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 75%] Built target mesh make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target moose_mpi make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 76%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o [ 77%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o Linking CXX static library libmoose_mpi.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 77%] Built target moose_mpi make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target signeur make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 77%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o [ 78%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o Linking CXX static library libsigneur.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 78%] Built target signeur make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target ksolve make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 79%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o [ 80%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o [ 81%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFuncPool.cpp.o [ 81%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o [ 82%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o [ 82%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o [ 83%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o [ 83%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o [ 84%] Building CXX object ksolve/CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o [ 84%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o [ 85%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o [ 85%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o [ 86%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyState.cpp.o /build/buildd/moose-3.0/ksolve/SteadyState.cpp: In function 'void print_gsl_mat(gsl_matrix*, const char*)': /build/buildd/moose-3.0/ksolve/SteadyState.cpp:470:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t {aka unsigned int}' [-Wformat=] printf( "%s[%lu, %lu] = \n", name, m->size1, m->size2 ); ^ /build/buildd/moose-3.0/ksolve/SteadyState.cpp:470:59: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=] [ 86%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o [ 87%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o Linking CXX static library libksolve.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 87%] Built target ksolve make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target hsolve make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 88%] Building CXX object hsolve/CMakeFiles/hsolve.dir/Cell.cpp.o [ 88%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HinesMatrix.cpp.o [ 89%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o [ 89%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o [ 90%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o [ 90%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o [ 91%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o [ 91%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o [ 92%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o [ 92%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o [ 93%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o [ 93%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o [ 94%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o [ 94%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o Linking CXX static library libhsolve.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 94%] Built target hsolve make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target diffusion make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 95%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o [ 95%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o [ 96%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o /build/buildd/moose-3.0/diffusion/Dsolve.cpp: In member function 'void Dsolve::makePoolMapFromElist(const std::vector&, std::vector&)': /build/buildd/moose-3.0/diffusion/Dsolve.cpp:366:37: warning: 'maxId' may be used uninitialized in this function [-Wmaybe-uninitialized] poolMap_.resize( 1 + maxId - minId ); ^ /build/buildd/moose-3.0/diffusion/Dsolve.cpp:370:19: warning: 'minId' may be used uninitialized in this function [-Wmaybe-uninitialized] assert( idValue - minId < poolMap_.size() ); ^ [ 96%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o Linking CXX static library libdiffusion.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 96%] Built target diffusion make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target device make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 96%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o [ 97%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o [ 98%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o [ 98%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o Linking CXX static library libdevice.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 98%] Built target device make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target benchmarks make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o [ 99%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o Linking CXX static library libbenchmarks.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Built target benchmarks make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target _moose make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Building CXX object CMakeFiles/_moose.dir/pymoose/moosemodule.cpp.o In file included from /usr/include/python2.7/Python.h:80:0, from /build/buildd/moose-3.0/pymoose/moosemodule.cpp:78: /build/buildd/moose-3.0/pymoose/moosemodule.cpp: In function 'PyObject* to_py(void*, char)': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:27:31: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_TRUE return Py_INCREF(Py_True), Py_True ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:370:21: note: in expansion of macro 'Py_RETURN_TRUE' Py_RETURN_TRUE; ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /usr/include/python2.7/boolobject.h:28:32: note: in expansion of macro 'Py_INCREF' #define Py_RETURN_FALSE return Py_INCREF(Py_False), Py_False ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:372:21: note: in expansion of macro 'Py_RETURN_FALSE' Py_RETURN_FALSE; ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp: In function 'void init_moose()': /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:2762:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&IdType); ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:2772:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&ObjIdType); ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:2782:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_LookupField); ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:2789:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_ElementField); ^ /usr/include/python2.7/object.h:767:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] ((PyObject*)(op))->ob_refcnt++) ^ /build/buildd/moose-3.0/pymoose/moosemodule.cpp:2801:9: note: in expansion of macro 'Py_INCREF' Py_INCREF(&moose_DestField); ^ Linking CXX shared library ../python/moose/_moose.so make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Built target _moose make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target moose.bin make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o Linking CXX executable moose.bin make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target moose.bin make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target simplelogger make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Linking CXX static library libsimplelogger.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target simplelogger make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Scanning dependencies of target simpletest make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Linking CXX static library libsimpletest.a make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target simpletest make[2]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[1]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "obj-i686-linux-gnu" /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_PYTHON_BUILD_ARGS is deprecated since 0.4.89 mkdir -p debian/python-module-stampdir DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C obj-i686-linux-gnu install DESTDIR=/build/buildd/moose-3.0/debian/moose/ make[1]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[2]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 11%] Built target kinetics make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 29%] Built target biophysics make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 33%] Built target utility make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 46%] Built target basecode make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 48%] Built target moosepython make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 52%] Built target msg make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 56%] Built target shell make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 57%] Built target randnum make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 58%] Built target scheduling make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 64%] Built target moose_builtins make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Built target muparser make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 69%] Built target tinyxml make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 75%] Built target mesh make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 77%] Built target moose_mpi make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 78%] Built target signeur make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 87%] Built target ksolve make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 94%] Built target hsolve make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 96%] Built target diffusion make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 98%] Built target device make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Built target benchmarks make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [ 99%] Built target _moose make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target moose.bin make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target simplelogger make[3]: Entering directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' [100%] Built target simpletest make[2]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' Install the project... -- Install configuration: "distribution" -- Installing: /build/buildd/moose-3.0/debian/moose/usr/bin/moose.bin -- Installing: /build/buildd/moose-3.0/debian/moose/usr/bin/moose CPACK_TEMPORARY_INSTALL_DIRECTORY ++ Installing python scripts: /usr +++ Updating PYTHONPATH: /usr/lib/python2.7/dist-packages +++ Creating directory /usr/lib/python2.7/dist-packages running build_py creating /tmp/lib.linux-i686-2.7 creating /tmp/lib.linux-i686-2.7/libmumbl copying libmumbl/main.py -> /tmp/lib.linux-i686-2.7/libmumbl copying libmumbl/util.py -> /tmp/lib.linux-i686-2.7/libmumbl copying libmumbl/__init__.py -> /tmp/lib.linux-i686-2.7/libmumbl creating /tmp/lib.linux-i686-2.7/moose copying moose/print_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/sim_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/constants.py -> /tmp/lib.linux-i686-2.7/moose copying moose/moose_config.py -> /tmp/lib.linux-i686-2.7/moose copying moose/recording.py -> /tmp/lib.linux-i686-2.7/moose copying moose/graph_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/graphutil.py -> /tmp/lib.linux-i686-2.7/moose copying moose/moose.py -> /tmp/lib.linux-i686-2.7/moose copying moose/alternate.py -> /tmp/lib.linux-i686-2.7/moose copying moose/mtypes.py -> /tmp/lib.linux-i686-2.7/moose copying moose/moose_constants.py -> /tmp/lib.linux-i686-2.7/moose copying moose/verification_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/plot_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/hdfutil.py -> /tmp/lib.linux-i686-2.7/moose copying moose/utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/__init__.py -> /tmp/lib.linux-i686-2.7/moose copying moose/methods_utils.py -> /tmp/lib.linux-i686-2.7/moose copying moose/moose_py3k.py -> /tmp/lib.linux-i686-2.7/moose creating /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/NeuroML.py -> /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/ChannelML.py -> /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/MorphML.py -> /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/utils.py -> /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/NetworkML.py -> /tmp/lib.linux-i686-2.7/moose/neuroml copying moose/neuroml/__init__.py -> /tmp/lib.linux-i686-2.7/moose/neuroml creating /tmp/lib.linux-i686-2.7/moose/backend copying moose/backend/graphviz.py -> /tmp/lib.linux-i686-2.7/moose/backend copying moose/backend/spice.py -> /tmp/lib.linux-i686-2.7/moose/backend copying moose/backend/backend.py -> /tmp/lib.linux-i686-2.7/moose/backend copying moose/backend/__init__.py -> /tmp/lib.linux-i686-2.7/moose/backend creating /tmp/lib.linux-i686-2.7/mgui copying mgui/mplugin.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/checkcombobox.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mgui.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/objectedit.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mload.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/configwidget.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/shell.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mtoolbutton.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/config.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/scishell.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/msearch.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/loaderdialog.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mplot.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mtree.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/mexception.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/biomodelsclient.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/defaults.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/newmodeldialog.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/utils.py -> /tmp/lib.linux-i686-2.7/mgui copying mgui/__init__.py -> /tmp/lib.linux-i686-2.7/mgui creating /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/test_plotwidget.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkit.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/buildkkit.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkitCalcArrow.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/modelBuild.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkitUtil.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkitOrdinateUtil.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkitViewcontrol.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/kkitQGraphics.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/default.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying mgui/plugins/__init__.py -> /tmp/lib.linux-i686-2.7/mgui/plugins copying moose/_moose.so -> /tmp/lib.linux-i686-2.7/moose copying mgui/moosegui -> /tmp/lib.linux-i686-2.7/mgui creating /tmp/lib.linux-i686-2.7/mgui/bioModels copying mgui/bioModels/getModelsIdByChEBI.pkl -> /tmp/lib.linux-i686-2.7/mgui/bioModels copying mgui/bioModels/getModelsIdByChEBIId.pkl -> /tmp/lib.linux-i686-2.7/mgui/bioModels copying mgui/bioModels/getAllCuratedModelsId.pkl -> /tmp/lib.linux-i686-2.7/mgui/bioModels creating /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/moose_icon_large.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/squid.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/hopfield.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/help.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/run.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/reset.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/continue.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/moose_icon.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/arrow.png -> /tmp/lib.linux-i686-2.7/mgui/icons copying mgui/icons/QMdiBackground.png -> /tmp/lib.linux-i686-2.7/mgui/icons creating /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/jet -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/grey -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/rainbow2.pkl -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/fire -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/greenfire -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/redhot -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/colormaps/heat -> /tmp/lib.linux-i686-2.7/mgui/colormaps copying mgui/plugins/list.txt -> /tmp/lib.linux-i686-2.7/mgui/plugins running build running install error: can't create or remove files in install directory The following error occurred while trying to add or remove files in the installation directory: [Errno 13] Permission denied: '/usr/lib/python2.7/dist-packages/test-easy-install-7201.write-test' The installation directory you specified (via --install-dir, --prefix, or the distutils default setting) was: /usr/lib/python2.7/dist-packages/ Perhaps your account does not have write access to this directory? If the installation directory is a system-owned directory, you may need to sign in as the administrator or "root" account. If you do not have administrative access to this machine, you may wish to choose a different installation directory, preferably one that is listed in your PYTHONPATH environment variable. For information on other options, you may wish to consult the documentation at: https://pythonhosted.org/setuptools/easy_install.html Please make the appropriate changes for your system and try again. -- Installing: /build/buildd/moose-3.0/debian/moose/usr/bin/moosegui make[1]: Leaving directory '/build/buildd/moose-3.0/obj-i686-linux-gnu' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/moose.substvars dh_installdirs -pmoose dh_installdocs -pmoose ./README dh_installexamples -pmoose dh_installman -pmoose dh_installinfo -pmoose dh_installmenu -pmoose dh_installcron -pmoose dh_installinit -pmoose dh_installdebconf -pmoose dh_installemacsen -pmoose dh_installcatalogs -pmoose dh_installpam -pmoose dh_installlogrotate -pmoose dh_installlogcheck -pmoose dh_installchangelogs -pmoose dh_installudev -pmoose dh_lintian -pmoose dh_bugfiles -pmoose dh_install -pmoose dh_link -pmoose dh_installmime -pmoose dh_installgsettings -pmoose dh_strip -pmoose dh_strip debug symbol extraction: disabling for PPA build dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: not doing anything since NO_PKG_MANGLE is given dh_compress -pmoose dh_fixperms -pmoose dh_makeshlibs -pmoose dh_installdeb -pmoose dh_perl -pmoose dh_shlibdeps -pmoose dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/moose/usr/bin/moose.bin debian/moose/usr/share/moose/python/moose/_moose.so were not linked against libgslcblas.so.0 (they use none of the library's symbols) dh_gencontrol -pmoose dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pmoose ; fi dh_md5sums -pmoose dh_builddeb -pmoose INFO: pkgstriptranslations version 121 INFO: Disabling pkgstriptranslations for PPA build INFO: Disabling pkgmaintainermangler for PPA build INFO: Disabling pkgstripfiles for PPA build dpkg-deb: building package `moose' in `../moose_3.0-0~2919~ubuntu14.10.1_i386.deb'. dpkg-genchanges -b -mUbuntu Build Daemon >../moose_3.0-0~2919~ubuntu14.10.1_i386.changes dpkg-genchanges: warning: the current version (3.0-0~2919~ubuntu14.10.1) is earlier than the previous one (3.0) dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build moose-3.0 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140726-1533 chroot-autobuild/build/buildd/moose_3.0-0~2919~ubuntu14.10.1_i386.deb: new debian package, version 2.0. size 6055720 bytes: control archive= 22504 bytes. 1246 bytes, 23 lines control 55939 bytes, 635 lines md5sums 2020 bytes, 58 lines * postinst #!/bin/sh 1511 bytes, 65 lines * prerm #!/bin/sh Package: moose Version: 3.0-0~2919~ubuntu14.10.1 Architecture: i386 Maintainer: Dilawar Singh Installed-Size: 28870 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libgsl0ldbl (>= 1.9), libpython2.7 (>= 2.7), libstdc++6 (>= 4.6), libhdf5-7, gsl-bin Suggests: libsbml5 Section: science Priority: optional Homepage: http://moose.ncbs.res.in Description: MOOSE is the Multiscale Object-Oriented Simulation Environment. It is the base and numerical core for large, detailed simulations including Computational Neuroscience and Systems Biology. MOOSE spans the range from single molecules to subcellular networks, from single cells to neuronal networks, and to still larger systems. MOOSE uses Python for scripting compatibility with a large range of software and analysis tools. It recognizes model definition standards including SBML, NeuroML, and GENESIS model file formatsGallery . MOOSE is open source software, licensed under the LGPL (Lesser GNU Public License). It has absolutely no warranty. . The MOOSE team is also participating in development of MOOGLI: a library and standalone application for displaying time-course of activity of detailed 3-D network models using OpenGL and also using OpenSceneGraph chroot-autobuild/build/buildd/moose_3.0-0~2919~ubuntu14.10.1_i386.deb: dpkg-deb: file `chroot-autobuild/build/buildd/moose_3.0-0~2919~ubuntu14.10.1_i386.deb' contains ununderstood data member data.tar.xz , giving up moose_3.0-0~2919~ubuntu14.10.1_i386.changes: Format: 1.8 Date: Sat, 26 Jul 2014 15:13:37 +0000 Source: moose Binary: moose Architecture: i386 Version: 3.0-0~2919~ubuntu14.10.1 Distribution: utopic Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Dilawar Singh Description: moose - MOOSE is the Multiscale Object-Oriented Simulation Environment. I Changes: moose (3.0-0~2919~ubuntu14.10.1) utopic; urgency=low . * Auto build. Checksums-Sha1: 4b91bb6af0e05ddefc4848068f18e06b399a4648 6055720 moose_3.0-0~2919~ubuntu14.10.1_i386.deb Checksums-Sha256: 8dfa2cb819359f712faa3a4d50dd58b1c43be9784debab88fb79800b38c0c2d4 6055720 moose_3.0-0~2919~ubuntu14.10.1_i386.deb Files: 7adaaebbc0345a64dcdaa2154d838ba8 6055720 science optional moose_3.0-0~2919~ubuntu14.10.1_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140726-1533 Build needed 00:14:19, 515776k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6214857'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6214857/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6214857'] Unmounting chroot for build PACKAGEBUILD-6214857... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6214857'] Removing build PACKAGEBUILD-6214857