concavity 0.1+dfsg-1 (amd64 binary) in ubuntu yakkety
ConCavity predicts protein ligand binding sites by combining evolutionary
sequence conservation and 3D structure.
.
ConCavity takes as input a PDB format protein structure and optionally
files that characterize the evolutionary sequence conservation of the chains
in the structure file.
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The following result files are produced by default:
* Residue ligand binding predictions for each chain (*.scores).
* Residue ligand binding predictions in a PDB format file (residue
scores placed in the temp. factor field, *_residue.pdb).
* Pocket prediction locations in a DX format file (*.dx).
* PyMOL script to visualize the predictions (*.pml).
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ConCavity has many features. The default run of concavity is equivalent to
ConCavity in the paper:
'Capra JA, Laskowski RA, Thornton JM, Singh M, and Funkhouser TA(2009)
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence
Conservation and 3D Structure. PLoS Comput Biol, 5(12).'.
.
score_
calculate evolutionary sequence conservation for concavity.
Details
- Package version:
- 0.1+dfsg-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Extra
Downloadable files
- concavity_0.1+dfsg-1_amd64.deb (279.0 KiB)
Package relationships
- Depends on:
- Suggests: