shasta binary package in Ubuntu Oracular amd64

 De novo assembly from Oxford Nanopore reads. The goal of the Shasta long
 read assembler is to rapidly produce accurate assembled sequence using
 as input DNA reads generated by Oxford Nanopore flow cells.
 .
 Computational methods used by the Shasta assembler include:
 .
  * Using a run-length representation of the read sequence. This makes
    the assembly process more resilient to errors in homopolymer
    repeat counts, which are the most common type of errors in Oxford
    Nanopore reads.
 .
  * Using in some phases of the computation a representation of the read
    sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
 .
 Shasta assembly quality is comparable or better than assembly quality
 achieved by other long read assemblers.
 .
 This package contains the executable binaries (tools) and
 accommodating scripts.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2024-05-28 12:49:20 UTC Published Ubuntu Oracular amd64 release universe science Optional 0.12.0-1
  • Published
  • Copied from ubuntu oracular-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Oracular amd64 proposed universe science Optional 0.12.0-1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to oracular

  • Published
  2024-05-28 12:51:11 UTC Superseded Ubuntu Oracular amd64 release universe science Optional 0.11.1-5
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of shasta 0.12.0-1 in ubuntu oracular PROPOSED
  • Published
  • Copied from ubuntu oracular-proposed amd64 in Primary Archive for Ubuntu
  2024-05-29 12:10:16 UTC Deleted Ubuntu Oracular amd64 proposed universe science Optional 0.11.1-5
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to oracular

  • Published
  2024-05-17 14:29:19 UTC Superseded Ubuntu Oracular amd64 release universe science Optional 0.11.1-4build4
  • Removal requested .
  • Superseded by amd64 build of shasta 0.11.1-5 in ubuntu oracular PROPOSED
  • Published
  • Copied from ubuntu noble-proposed amd64 in Primary Archive for Ubuntu

Source package