Copyright for cbflib source package in Oracular

Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: CBFlib
Upstream-Contact: Herbert J. Bernstein 
Source: The upstream sources obtained from https://github.com/yayahjb/cbflib/
 have been modified by removing files which were unnecessary and of
 unknown copyright and licence status. See the get-orig-source target in
 debian/rules for exact list of removed files.
Files-Excluded: drel-ply
                dREL-ply-0.5
                external_packages
                libtool
                ply-3.2
                pycbf/pycbf_0.7.7.zip
                pycbf/_pycbf.pyd
                pycbf/pycbf.aux
                pycbf/pycbf.dvi
                pycbf/pycbf.log
                pycbf/pycbf.out
                pycbf/pycbf.pdf
                pycbf/pycbf.toc

Files: *
Copyright: 2006, 2007, 2008, 2010, 2014, 2020 Herbert J. Bernstein
License: GPL-2 or LGPL-2.1
 YOU MAY REDISTRIBUTE THE CBFLIB PACKAGE UNDER THE TERMS OF THE GPL
 ALTERNATIVELY YOU MAY REDISTRIBUTE THE CBFLIB API UNDER THE TERMS
 OF THE LGPL
 .
 On Debian systems, the complete text of the GNU General
 Public License can be found in '/usr/share/common-licenses/GPL-2' and the
 complete text of the GNU Lesser General Public License in
 '/usr/share/common-licenses/LGPL-2.1'.
 .
 ---------------------------------------------------------------------
 .
                       Stanford University Notices
 for the CBFlib software package that incorporates SLAC software on which
                         copyright is disclaimed
 .
 This software
 .
   The term 'this software', as used in these Notices, refers to those
   portions of the software package CBFlib that were created by employees of
   the Stanford Linear Accelerator Center, Stanford University.
 .
 Stanford disclaimer of copyright
 .
   Stanford University, owner of the copyright, hereby disclaims its
   copyright and all other rights in this software. Hence, anyone may freely
   use it for any purpose without restriction.
 .
 Acknowledgement of sponsorship
 .
   This software was produced by the Stanford Linear Accelerator Center,
   Stanford University, under Contract DE-AC03-76SFO0515 with the Department
   of Energy.
 .
 Government disclaimer of liability
 .
   Neither the United States nor the United States Department of Energy, nor
   any of their employees, makes any warranty, express or implied, or assumes
   any legal liability or responsibility for the accuracy, completeness, or
   usefulness of any data, apparatus, product, or process disclosed, or
   represents that its use would not infringe privately owned rights.
 .
 Stanford disclaimer of liability
 .
   Stanford University makes no representations or warranties, express or
   implied, nor assumes any liability for the use of this software.
 .
 Maintenance of notices
 .
   In the interest of clarity regarding the origin and status of this
   software, this and all the preceding Stanford University notices are to
   remain affixed to any copy or derivative of this software made or
   distributed by the recipient and are to be affixed to any copy of software
   made or distributed by the recipient that contains a copy or derivative of
   this software.
 .
   Based on SLAC Software Notices, Set 4 OTT.002a, 2004 FEB 03
 .
 ----------------------------------------------------------------------
 .
                              The IUCr Policy
         for the Protection and the Promotion of the STAR File and
         CIF Standards for Exchanging and Archiving Electronic Data
 .
  Overview
 .
 The Crystallographic Information File (CIF)[1] is a standard for
 information interchange promulgated by the International Union of
 Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the recommended
 method for submitting publications to Acta Crystallographica Section C and
 reports of crystal structure determinations to other sections of Acta
 Crystallographica and many other journals. The syntax of a CIF is a subset
 of the more general STAR File[2] format. The CIF and STAR File approaches
 are used increasingly in the structural sciences for data exchange and
 archiving, and are having a significant influence on these activities in
 other fields.
 .
  Statement of intent
 .
 The IUCr's interest in the STAR File is as a general data interchange
 standard for science, and its interest in the CIF, a conformant derivative
 of the STAR File, is as a concise data exchange and archival standard for
 crystallography and structural science.
 .
  Protection of the standards
 .
 To protect the STAR File and the CIF as standards for interchanging and
 archiving electronic data, the IUCr, on behalf of the scientific
 community,
 .
 * holds the copyrights on the standards themselves,
 .
 * owns the associated trademarks and service marks, and
 .
 * holds a patent on the STAR File.
 .
 These intellectual property rights relate solely to the interchange
 formats, not to the data contained therein, nor to the software used in
 the generation, access or manipulation of the data.
 .
  Promotion of the standards
 .
 The sole requirement that the IUCr, in its protective role, imposes on
 software purporting to process STAR File or CIF data is that the following
 conditions be met prior to sale or distribution.
 .
 * Software claiming to read files written to either the STAR File or the
 CIF standard must be able to extract the pertinent data from a file
 conformant to the STAR File syntax, or the CIF syntax, respectively.
 .
 * Software claiming to write files in either the STAR File, or the CIF,
 standard must produce files that are conformant to the STAR File syntax,
 or the CIF syntax, respectively.
 .
 * Software claiming to read definitions from a specific data dictionary
 approved by the IUCr must be able to extract any pertinent definition
 which is conformant to the dictionary definition language (DDL)[3]
 associated with that dictionary.
 .
 The IUCr, through its Committee on CIF Standards, will assist any
 developer to verify that software meets these conformance conditions.
 .
  Glossary of terms
 .
 [1] CIF:
 .
 is a data file conformant to the file syntax defined at
 http://www.iucr.org/iucr-top/cif/spec/index.html
 .
 [2] STAR File:
 .
 is a data file conformant to the file syntax defined at
 http://www.iucr.org/iucr-top/cif/spec/star/index.html
 .
 [3] DDL:
 .
 is a language used in a data dictionary to define data items in terms of
 "attributes". Dictionaries currently approved by the IUCr, and the DDL
 versions used to construct these dictionaries, are listed at
 http://www.iucr.org/iucr-top/cif/spec/ddl/index.html
 .
 Last modified: 30 September 2000
 .
 IUCr Policy Copyright (C) 2000 International Union of Crystallography
 .
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 .
                             CBFlib V0.1 Notice
 .
 The following Diclaimer Notice applies to CBFlib V0.1, from which this
 version is derived.
   * The items furnished herewith were developed under the sponsorship of
     the U.S. Government. Neither the U.S., nor the U.S. D.O.E., nor the
     Leland Stanford Junior University, nor their employees, makes any
     warranty, express or implied, or assumes any liability or
     responsibility for accuracy, completeness or usefulness of any
     information, apparatus, product or process disclosed, or represents
     that its use will not infringe privately-owned rights. Mention of any
     product, its manufacturer, or suppliers shall not, nor is it intended
     to, imply approval, disapproval, or fitness for any particular use.
     The U.S. and the University at all times retain the right to use and
     disseminate the furnished items for any purpose whatsoever.
   * Notice 91 02 01
 .
 ----------------------------------------------------------------------
 .
                              CIFPARSE notice
 .
 Portions of this software are loosely based on the CIFPARSE software
 package from the NDB at Rutgers university (see
 http://ndbserver.rutgers.edu/NDB/mmcif/software). CIFPARSE is part of the
 NDBQUERY application, a program component of the Nucleic Acid Database
 Project [ H. M. Berman, W. K. Olson, D. L. Beveridge, J. K. Westbrook, A.
 Gelbin, T. Demeny, S. H. Shieh, A. R. Srinivasan, and B. Schneider.
 (1992). The Nucleic Acid Database: A Comprehensive Relational Database of
 Three-Dimensional Structures of Nucleic Acids. Biophys J., 63, 751-759.],
 whose cooperation is gratefully acknowledged, especially in the form of
 design concepts created by J. Westbrook.
 .
 Please be aware of the following notice in the CIFPARSE API:
   * This software is provided WITHOUT WARRANTY OF MERCHANTABILITY OR
     FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR
     IMPLIED. RUTGERS MAKE NO REPRESENTATION OR WARRANTY THAT THE SOFTWARE
     WILL NOT INFRINGE ANY PATENT, COPYRIGHT OR OTHER PROPRIETARY RIGHT.
 .
 ----------------------------------------------------------------------
 .
                                MPACK notice
 .
 Portions of this library are adapted from the "mpack/munpack version 1.5"
 routines, written by John G. Myers. Mpack and munpack are utilities for
 encoding and decoding (respectively) binary files in MIME (Multipurpose
 Internet Mail Extensions) format mail messages. The mpack software used is
 (C) Copyright 1993,1994 by Carnegie Mellon University, All Rights
 Reserved, and is subject to the following notice:
   * Permission to use, copy, modify, distribute, and sell this software
     and its documentation for any purpose is hereby granted without fee,
     provided that the above copyright notice appear in all copies and that
     both that copyright notice and this permission notice appear in
     supporting documentation, and that the name of Carnegie Mellon
     University not be used in advertising or publicity pertaining to
     distribution of the software without specific, written prior
     permission. Carnegie Mellon University makes no representations about
     the suitability of this software for any purpose. It is provided "as
     is" without express or implied warranty.
   * CARNEGIE MELLON UNIVERSITY DISCLAIMS ALL WARRANTIES WITH REGARD TO
     THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
     FITNESS, IN NO EVENT SHALL CARNEGIE MELLON UNIVERSITY BE LIABLE FOR
     ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
     WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
     ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT
     OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
 .
 ----------------------------------------------------------------------
 .
                       CCP4 Packed Compression Notice
 .
 The CBF_PACKED and CBF_PACKED_V2 compression and decompression code
 incorporated in CBFlib is derived in large part from the J. P. Abrahams
 pack_c.c compression code in CCP4. This code is incorporated in CBFlib
 under the GPL and the LGPL with both the permission Jan Pieter Abrahams,
 the original author of pack_c.c (email from Jan Pieter Abrahams of 15
 January 2007) and of the CCP4 project (email from Martyn Winn on 12
 January 2007). The cooperation of J. P. Abrahams and of the CCP4 project
 is gratefully acknowledged.
 .
 ----------------------------------------------------------------------

Files: src/md5c.c include/md5.h
Copyright: 1991, 1992 RSA Data Security, Inc.
License: MD5
                                 MD5 Notice
 .
 The following notice applies to the message digest software in md5.h and
 md5.c which are optionally used by this library. To that extent, this
 library is a work "derived from the RSA Data Security, Inc. MD5
 Message-Digest Algorithm".
 .
 The software in md5.h and md5.c is Copyright (C) 1991-2, RSA Data
 Security, Inc. Created 1991. All rights reserved, and is subject to the
 following notice:
   * License to copy and use this software is granted provided that it is
     identified as the "RSA Data Security, Inc. MD5 Message-Digest
     Algorithm" in all material mentioning or referencing this software or
     this function.
   * License is also granted to make and use derivative works provided that
     such works are identified as "derived from the RSA Data Security, Inc.
     MD5 Message-Digest Algorithm" in all material mentioning or
     referencing the derived work.
   * RSA Data Security, Inc. makes no representations concerning either the
     merchantability of this software or the suitability of this software
     for any particular purpose. It is provided "as is" without express or
     implied warranty of any kind.
   * These notices must be retained in any copies of any part of this
     documentation and/or software.

Files: debian/*
Copyright: 2008, 2010, 2013, 2018, 2020 Teemu Ikonen ,
 Morten Kjeldgaard 
 Picca Frédéric-Emmanuel 
License: GPL-2+
 This program is free software; you can redistribute it
 and/or modify it under the terms of the GNU General Public
 License as published by the Free Software Foundation; either
 version 2 of the License, or (at your option) any later
 version.
 .
 This program is distributed in the hope that it will be
 useful, but WITHOUT ANY WARRANTY; without even the implied
 warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
 PURPOSE.  See the GNU General Public License for more
 details.
 .
 You should have received a copy of the GNU General Public
 License along with this package; if not, write to the Free
 Software Foundation, Inc., 51 Franklin St, Fifth Floor,
 Boston, MA  02110-1301 USA
 .
 On Debian systems, the full text of the GNU General Public
 License version 2 can be found in the file
 `/usr/share/common-licenses/GPL-2'.