python3-nanoget binary package in Ubuntu Noble amd64

 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2024-02-19 22:42:02 UTC Published Ubuntu Noble amd64 release universe python Optional 1.19.3-1
  • Published
  • Copied from ubuntu noble-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Noble amd64 proposed universe python Optional 1.19.3-1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  2024-02-19 22:42:26 UTC Superseded Ubuntu Noble amd64 release universe python Optional 1.16.1-2
  • Removal requested .
  • Superseded by amd64 build of python-nanoget 1.19.3-1 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu lunar-proposed amd64 in Primary Archive for Ubuntu