Binary package “minimap2” in ubuntu lunar
versatile pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or
mRNA sequences against a large reference database. Typical use cases
include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
human genome; (2) finding overlaps between long reads with error rate up
to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
or Direct RNA reads against a reference genome; (4) aligning Illumina
single- or paired-end reads; (5) assembly-
genome alignment between two closely related species with divergence
below ~15%.
.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
is more accurate on simulated long reads and produces biologically
meaningful alignment ready for downstream analyses. For >100bp Illumina
short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
as accurate on simulated data. Detailed evaluations are available from
the minimap2 paper or the preprint.
Source package
Published versions
- minimap2 2.24+dfsg-2 in amd64 (Release)
- minimap2 2.24+dfsg-3build1 in amd64 (Proposed)
- minimap2 2.24+dfsg-3build1 in amd64 (Release)
- minimap2 2.24+dfsg-2 in arm64 (Release)
- minimap2 2.24+dfsg-3build1 in arm64 (Proposed)
- minimap2 2.24+dfsg-3build1 in arm64 (Release)
- minimap2 2.24+dfsg-2 in armhf (Release)
- minimap2 2.24+dfsg-3build1 in armhf (Proposed)
- minimap2 2.24+dfsg-3build1 in armhf (Release)
- minimap2 2.24+dfsg-2 in ppc64el (Release)
- minimap2 2.24+dfsg-3build1 in ppc64el (Proposed)
- minimap2 2.24+dfsg-3build1 in ppc64el (Release)
- minimap2 2.24+dfsg-2 in riscv64 (Release)
- minimap2 2.24+dfsg-3build1 in riscv64 (Proposed)
- minimap2 2.24+dfsg-3build1 in riscv64 (Release)
- minimap2 2.24+dfsg-2 in s390x (Release)
- minimap2 2.24+dfsg-3build1 in s390x (Proposed)
- minimap2 2.24+dfsg-3build1 in s390x (Release)