python-biopython (1.49-1) unstable; urgency=low
* New upstream release.
- uses NumPy rather than its precursor Numeric (Closes: #478457)
- Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
Bio.IntelliGenetics are deprecated.
- Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
and will be deprecated in a future release.
- Bio.Fasta is also considered to be obsolete and will eventually be
deprecated.
* debian/control:
- added myself as Uploader.
- depends on python-numpy instead of python-numeric-ext.
- moved python-martel to oldlibs section, priority extra as it is
deprecated, and indicate this in the description.
- build-depend on python-mysqldb and wise for the tests after building.
* Use Debhelper 7 (debian/co{ntrol,mpat}).
* debian/copyright: added myself to the Hall of Fame and updated to latest
draft of the machine-readable format.
* debian/watch: makes beta versions lower by prepending a tilde between
numbers and letters (1.49b -> 1.49~b).
* mmCIF support enabled:
- debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
- debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
- debian/control: build-depends on quilt.
* debian/python-biopython-doc.doc-base: corrected index name that was changed
upstream.
* debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
version of Wise.
* debian/rules: perform tests after build.
-- Morten Kjeldgaard <email address hidden> Sun, 25 Jan 2009 01:44:13 +0000