Binary package “maffilter” in ubuntu focal
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
Source package
Published versions
- maffilter 1.3.1+dfsg-1build1 in amd64 (Proposed)
- maffilter 1.3.1+dfsg-1build1 in amd64 (Release)
- maffilter 1.3.1+dfsg-1build1 in arm64 (Proposed)
- maffilter 1.3.1+dfsg-1build1 in arm64 (Release)
- maffilter 1.3.1+dfsg-1build1 in armhf (Proposed)
- maffilter 1.3.1+dfsg-1build1 in armhf (Release)
- maffilter 1.3.1+dfsg-1build1 in ppc64el (Proposed)
- maffilter 1.3.1+dfsg-1build1 in ppc64el (Release)
- maffilter 1.3.1+dfsg-1build1 in riscv64 (Release)
- maffilter 1.3.1+dfsg-1build1 in s390x (Proposed)
- maffilter 1.3.1+dfsg-1build1 in s390x (Release)