Ubuntu
veryfasttree package

veryfasttree 4.0.3+dfsg-1 source package in Ubuntu

Changelog

veryfasttree (4.0.3+dfsg-1) unstable; urgency=medium

  * 32 bits compatible version
  * baseline-specific executables moved out of the path to libexec

 -- César Pomar <email address hidden>  Tue, 12 Sep 2023 20:02:05 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc
Mantic release universe misc

Downloads

File Size SHA-256 Checksum
veryfasttree_4.0.3+dfsg-1.dsc 2.1 KiB 5253b8b43e9f3b5f5f62cf80d8df72f0f0e71b2f2825325361ed39256327d382
veryfasttree_4.0.3+dfsg.orig.tar.xz 157.5 KiB 3f24be6be983e5735b7a42477e5113957da46081fa0481e293524e933f8a792f
veryfasttree_4.0.3+dfsg-1.debian.tar.xz 34.5 KiB 1c6470d9cf9bac28f50ba08f05763988e42e3f25397f3c5df673c46331dbebaa

Available diffs

No changes file available.

Binary packages built by this source

veryfasttree: Speeding up the estimation of phylogenetic trees from sequences

 VeryFastTree is a highly efficient implementation inspired by the FastTree-2
 tool, designed to expedite the inference of approximately-maximum-likelihood
 phylogenetic trees from nucleotide or protein sequence alignments. It is an
 optimized implementation designed to accelerate the estimation of phylogenies
 for large alignments. By leveraging parallelization and vectorization
 strategies, VeryFastTree significantly improves the performance and
 scalability of phylogenetic analysis, allowing it to construct phylogenetic
 trees in a fraction of the time previously required.
 .
 Maintaining the integrity of FastTree-2, VeryFastTree retains the same phases,
 methods, and heuristics used for estimating phylogenetic trees. This ensures
 that the topological accuracy of the trees produced by VeryFastTree remains
 equivalent to that of FastTree-2. Moreover, unlike the parallel version of
 FastTree-2, VeryFastTree guarantees deterministic results, eliminating any
 potential variations in the output.
 .
 To facilitate a seamless transition for users, VeryFastTree adopts the exact
 same command line arguments as FastTree-2. This means that by simply
 substituting FastTree-2 with VeryFastTree, and using the same set of options,
 users can significantly enhance the overall performance of their phylogenetic
 analyses.

veryfasttree-dbgsym: debug symbols for veryfasttree