Ubuntu
spaln package

spaln 2.4.9a+dfsg-3 source package in Ubuntu

Changelog

spaln (2.4.9a+dfsg-3) unstable; urgency=medium

  * Team upload.
  * d/rules: Simplify build flags setting.
    - No need to set "-Wall" nor "-flto" directly.
    - Don't enable LTO on RISC-V 64. (LP: #1993202)

 -- Sergio Durigan Junior <email address hidden>  Mon, 17 Oct 2022 17:18:08 -0400

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 arm64 mips64el ppc64el s390x alpha ia64 kfreebsd-amd64 ppc64 riscv64 sparc64 all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
spaln_2.4.9a+dfsg-3.dsc 2.2 KiB 343893b65e79cca5f5ab576fef0ea54bdf337c81b17c6467722b0da6d7645aa9
spaln_2.4.9a+dfsg.orig.tar.xz 18.8 MiB 912b0a0c93859d97d3cdba05746869b13c9a18dd7e5194b995b012e46a3b297a
spaln_2.4.9a+dfsg-3.debian.tar.xz 5.8 KiB bb2b5f476bdefe132ca20248498811542a601deb2f8f9697ebd16df21401e26e

Available diffs

No changes file available.

Binary packages built by this source

spaln: splicing-aware transcript-alignment to genomic DNA

 Spaln (space-efficient spliced alignment) is a stand-alone program that
 maps and aligns a set of cDNA or protein sequences onto a whole genomic
 sequence in a single job. It also performs spliced or ordinary alignment
 after rapid similarity search against a protein sequence database,
 if a genomic segment or an amino acid sequence is given as a query.
 .
 spaln supports a combination of protein sequence database and a
 given genomic segment and performs rapid similarity searches and
 (semi-)global alignments of a set of protein sequence queries against
 a protein sequence database. Spaln adopts multi-phase heuristics that
 makes it possible to perform the job on a conventional personal computer.

spaln-data: splicing-aware transcript-alignment to genomic DNA (data)

 Spaln (space-efficient spliced alignment) is a stand-alone program that
 maps and aligns a set of cDNA or protein sequences onto a whole genomic
 sequence in a single job. It also performs spliced or ordinary alignment
 after rapid similarity search against a protein sequence database,
 if a genomic segment or an amino acid sequence is given as a query.
 .
 spaln supports a combination of protein sequence database and a
 given genomic segment and performs rapid similarity searches and
 (semi-)global alignments of a set of protein sequence queries against
 a protein sequence database. Spaln adopts multi-phase heuristics that
 makes it possible to perform the job on a conventional personal computer.
 .
 This package contains the architecture independent data files.

spaln-dbgsym: debug symbols for spaln