Ubuntu
smalt package

smalt 0.7.6-13 source package in Ubuntu

Changelog

smalt (0.7.6-13) unstable; urgency=medium

  * Fix clean target
    Closes: #1047681
  * Standards-Version: 4.6.2 (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 12 Jan 2024 07:00:11 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc
Noble release universe misc

Downloads

File Size SHA-256 Checksum
smalt_0.7.6-13.dsc 2.1 KiB 73a02d5ccf688b9c44d411b435ee6dcdb3e8003e791adddfbb8909821379af4b
smalt_0.7.6.orig.tar.gz 68.9 MiB 89ccdfe471edba3577b43de9ebfdaedb5cd6e26b02bf4000c554253433796b31
smalt_0.7.6-13.debian.tar.xz 9.6 KiB 9d3aa8baf497303066244cddd4e58848574caa277a66a0dd6afff08db262132a

Available diffs

No changes file available.

Binary packages built by this source

smalt: Sequence Mapping and Alignment Tool

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.

smalt-dbgsym: debug symbols for smalt
smalt-examples: Sequence Mapping and Alignment Tool (examples)

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.
 .
 This package contains example data and a test suite to test the data.