RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-023 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Oct 09:27:21 ntpdate[1816]: adjust time server 10.211.37.1 offset 0.000043 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13631355 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 Starting target for build PACKAGEBUILD-13631355 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13631355 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 Updating target for build PACKAGEBUILD-13631355 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1069 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [542 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8101 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4788 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [116 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [47.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [300 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [163 kB] Fetched 15.6 MB in 4s (3487 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt apt-transport-https base-files binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-7 dpkg dpkg-dev g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcilkrts5 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgomp1 libhogweed4 libitm1 libkeyutils1 liblsan0 libmpx2 libnettle6 libpcre3 libpng16-16 libquadmath0 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv tzdata 56 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 47.3 MB of archives. After this operation, 322 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 linux-libc-dev amd64 4.13.0-16.19 [954 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libitm1 amd64 7.2.0-12ubuntu1 [27.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7-base amd64 7.2.0-12ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc1 amd64 1:7.2.0-12ubuntu1 [39.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpx2 amd64 7.2.0-12ubuntu1 [11.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgomp1 amd64 7.2.0-12ubuntu1 [76.4 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libatomic1 amd64 7.2.0-12ubuntu1 [8954 B] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libasan4 amd64 7.2.0-12ubuntu1 [360 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 liblsan0 amd64 7.2.0-12ubuntu1 [133 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libtsan0 amd64 7.2.0-12ubuntu1 [282 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libubsan0 amd64 7.2.0-12ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcilkrts5 amd64 7.2.0-12ubuntu1 [42.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libquadmath0 amd64 7.2.0-12ubuntu1 [132 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cpp-7 amd64 7.2.0-12ubuntu1 [6728 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcc1-0 amd64 7.2.0-12ubuntu1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 g++-7 amd64 7.2.0-12ubuntu1 [7554 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7 amd64 7.2.0-12ubuntu1 [7414 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc-7-dev amd64 7.2.0-12ubuntu1 [2377 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++-7-dev amd64 7.2.0-12ubuntu1 [1457 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++6 amd64 7.2.0-12ubuntu1 [405 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbinutils amd64 2.29.1-6ubuntu1 [502 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils amd64 2.29.1-6ubuntu1 [3344 B] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-common amd64 2.29.1-6ubuntu1 [190 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-6ubuntu1 [1825 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libudev1 amd64 234-2ubuntu12 [51.7 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapt-pkg5.0 amd64 1.5.1 [781 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt amd64 1.5.1 [1121 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.1 [13.2 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd amd64 234-2ubuntu12 [2780 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 libsystemd0 amd64 234-2ubuntu12 [208 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd-sysv amd64 234-2ubuntu12 [10.8 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-5ubuntu3 [229 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2 [6916 B] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2 [84.6 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libnettle6 amd64 3.3-2 [91.7 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 libhogweed4 amd64 3.3-2 [135 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 tzdata all 2017c-1 [188 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkeyutils1 amd64 1.5.9-9.1ubuntu1 [9488 B] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu2.1 [193 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt-transport-https amd64 1.5.1 [34.7 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.3 MB in 1s (47.3 MB/s) (Reading database ... 12676 files and directories 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Preparing to unpack .../base-files_10ubuntu1_amd64.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_amd64.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_amd64.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (234-2ubuntu12) ... Setting up libubsan0:amd64 (7.2.0-12ubuntu1) ... Setting up libtsan0:amd64 (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:amd64 (4.13.0-16.19) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up liblsan0:amd64 (7.2.0-12ubuntu1) ... Setting up binutils-common:amd64 (2.29.1-6ubuntu1) ... Setting up libmpx2:amd64 (7.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:amd64 (1.5.9-9.1ubuntu1) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:amd64 (2.26-0ubuntu2) ... Setting up libitm1:amd64 (7.2.0-12ubuntu1) ... Setting up apt-transport-https (1.5.1) ... Setting up libbinutils:amd64 (2.29.1-6ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:amd64 (7.2.0-12ubuntu1) ... Setting up libstdc++-7-dev:amd64 (7.2.0-12ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.29.1-6ubuntu1) ... Setting up binutils (2.29.1-6ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13631355 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13631355 --arch=amd64 --dist=bionic-proposed --nolog -A r-cran-ncdf4_1.15-1build3.dsc Initiating build PACKAGEBUILD-13631355 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-023.buildd +==============================================================================+ | r-cran-ncdf4 1.15-1build3 (amd64) 27 Oct 2017 09:27 | +==============================================================================+ Package: r-cran-ncdf4 Version: 1.15-1build3 Source Version: 1.15-1build3 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-cran-ncdf4-bCWTvR/r-cran-ncdf4-1.15' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-ncdf4-bCWTvR' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13631355/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-ncdf4_1.15-1build3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-_KfVJg/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-_KfVJg/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_KfVJg/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_KfVJg/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_KfVJg/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-_KfVJg/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (172 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-_KfVJg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12683 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-autoreconf, cdbs, r-base-dev, libnetcdf-dev (>= 1:4.1), netcdf-bin Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, cdbs, r-base-dev, libnetcdf-dev (>= 1:4.1), netcdf-bin dpkg-deb: building package 'sbuild-build-depends-r-cran-ncdf4-dummy' in '/<>/resolver-nn34Gw/apt_archive/sbuild-build-depends-r-cran-ncdf4-dummy.deb'. Ign:1 copy:/<>/resolver-nn34Gw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nn34Gw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nn34Gw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nn34Gw/apt_archive ./ Sources [255 B] Get:5 copy:/<>/resolver-nn34Gw/apt_archive ./ Packages [571 B] Fetched 2945 B in 0s (167 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-cran-ncdf4 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base hdf5-helpers icu-devtools intltool intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libcurl4-gnutls-dev libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu59 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnetcdf-dev libnetcdf13 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase netcdf-bin perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libhdf5-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc netcdf-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc less www-browser libmail-box-perl python-doc python-tk python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo libglib2.0-bin Recommended packages: curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libpng-tools libltdl-dev libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base hdf5-helpers icu-devtools intltool intltool-debian libaec-dev libaec0 libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libcurl4-gnutls-dev libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu59 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnetcdf-dev libnetcdf13 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase netcdf-bin perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev sbuild-build-depends-r-cran-ncdf4-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 149 newly installed, 1 to remove and 0 not upgraded. Need to get 80.2 MB of archives. After this operation, 266 MB of additional disk space will be used. 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amd64 libpipeline1 amd64 1.4.2-1 [25.2 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.7.6.1-2 [895 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 ucf all 3.0036 [52.9 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 fontconfig-config all 2.11.94-0ubuntu2 [49.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libexpat1 amd64 2.2.3-1 [72.3 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 libfreetype6 amd64 2.8-0.2ubuntu2 [333 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu2 [131 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 fontconfig amd64 2.11.94-0ubuntu2 [177 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-turbo8 amd64 1.5.2-0ubuntu5 [110 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-minimal amd64 2.7.14-2ubuntu2 [338 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 python2.7-minimal amd64 2.7.14-2ubuntu2 [1286 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 python-minimal amd64 2.7.14-2ubuntu1 [28.1 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-stdlib amd64 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2.9.4+dfsg1-5ubuntu1 [669 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 netbase all 5.4 [12.7 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu1 [49.4 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 xauth amd64 1:1.0.9-1ubuntu2 [22.7 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20161112.1 [39.5 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 14 [15.5 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.038-1 [13.3 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.038-1 [5026 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-1 [81.3 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu1 [1093 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:62 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 debhelper all 10.10.5ubuntu1 [876 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 liburi-perl all 1.72-1 [76.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 libhtml-parser-perl amd64 3.72-3build1 [85.9 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-openssl-defaults amd64 3 [6818 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 libnet-ssleay-perl amd64 1.80-1build1 [265 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 libio-socket-ssl-perl all 2.050-1 [168 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libnet-http-perl all 6.16-1 [22.6 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 liblwp-protocol-https-perl all 6.07-2 [8284 B] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 libwww-perl all 6.15-2 [135 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libxml-parser-perl amd64 2.44-2build3 [199 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool all 0.51.0-4 [44.3 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-translations all 131 [22.3 kB] Get:85 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python-six all 1.11.0-1 [11.1 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 python-pkg-resources all 36.2.7-2 [128 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 python-scour all 0.32-2 [42.8 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 cdbs all 0.4.151ubuntu2 [45.4 kB] Get:89 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgfortran4 amd64 7.2.0-12ubuntu1 [493 kB] Get:90 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgfortran-7-dev amd64 7.2.0-12ubuntu1 [530 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gfortran-7 amd64 7.2.0-12ubuntu1 [7090 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main amd64 gfortran amd64 4:7.2.0-1ubuntu1 [1278 B] Get:93 http://ftpmaster.internal/ubuntu bionic/universe amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4 [12.3 kB] Get:94 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 icu-devtools amd64 59.1-3ubuntu1 [177 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/universe amd64 libaec0 amd64 0.3.2-2 [18.1 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 libblas3 amd64 3.7.1-3ubuntu2 [140 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main amd64 libblas-dev amd64 3.7.1-3ubuntu2 [143 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.5 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main amd64 libpixman-1-0 amd64 0.34.0-1 [230 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 libxcb-render0 amd64 1.12-1ubuntu1 [14.8 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main amd64 libxcb-shm0 amd64 1.12-1ubuntu1 [5482 B] Get:102 http://ftpmaster.internal/ubuntu bionic/main amd64 libcairo2 amd64 1.14.10-1ubuntu1 [558 kB] Get:103 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl3 amd64 7.55.1-1ubuntu2.1 [196 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl4-gnutls-dev amd64 7.55.1-1ubuntu2.1 [270 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main amd64 libdatrie1 amd64 0.2.10-5 [17.6 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main amd64 libgraphite2-3 amd64 1.3.10-2 [78.3 kB] Get:107 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libharfbuzz0b amd64 1.4.2-1build1 [212 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/universe amd64 libsz2 amd64 0.3.2-2 [5114 B] Get:109 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4 [1256 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-4 [104 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu5 [225 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:115 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:116 http://ftpmaster.internal/ubuntu bionic/universe amd64 libaec-dev amd64 0.3.2-2 [16.4 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-dev amd64 1.10.0-patch1+docs-4 [2461 kB] Get:118 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libicu-dev amd64 59.1-3ubuntu1 [8597 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main amd64 liblapack3 amd64 3.7.1-3ubuntu2 [2112 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main amd64 liblapack-dev amd64 3.7.1-3ubuntu2 [2141 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main amd64 libtinfo-dev amd64 6.0+20160625-1ubuntu1 [78.9 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main amd64 libncurses5-dev amd64 6.0+20160625-1ubuntu1 [176 kB] Get:123 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libnetcdf13 amd64 1:4.5.0-1 [334 kB] Get:124 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 libnetcdf-dev amd64 1:4.5.0-1 [37.4 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main amd64 libthai-data all 0.1.26-3 [132 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main amd64 libthai0 amd64 0.1.26-3 [17.7 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main amd64 libpango-1.0-0 amd64 1.40.12-1 [152 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main amd64 libpangoft2-1.0-0 amd64 1.40.12-1 [33.2 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main amd64 libpangocairo-1.0-0 amd64 1.40.12-1 [20.8 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main amd64 libpaper1 amd64 1.1.24+nmu5ubuntu1 [13.6 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main amd64 libpaper-utils amd64 1.1.24+nmu5ubuntu1 [8170 B] Get:132 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre16-3 amd64 2:8.39-5ubuntu3 [147 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre32-3 amd64 2:8.39-5ubuntu3 [138 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcrecpp0v5 amd64 2:8.39-5ubuntu3 [15.2 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3-dev amd64 2:8.39-5ubuntu3 [536 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng-dev amd64 1.6.34-1 [177 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main amd64 libreadline-dev amd64 7.0-0ubuntu2 [132 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main amd64 libtcl8.6 amd64 8.6.7+dfsg-1 [881 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main amd64 libtiff5 amd64 4.0.8-5 [150 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main amd64 libtk8.6 amd64 8.6.7-1ubuntu1 [693 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:142 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 netcdf-bin amd64 1:4.5.0-1 [186 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main amd64 zip amd64 3.0-11build1 [167 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main amd64 unzip amd64 6.0-21ubuntu1 [167 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main amd64 xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:147 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 r-base-core amd64 3.4.2-1ubuntu2 [23.1 MB] Get:148 http://ftpmaster.internal/ubuntu bionic/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:149 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 r-base-dev all 3.4.2-1ubuntu2 [4456 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Setting up unzip (6.0-21ubuntu1) ... Setting up libtinfo-dev:amd64 (6.0+20160625-1ubuntu1) ... Setting up libdatrie1:amd64 (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:amd64 (1.5.2-0ubuntu5) ... Setting up libpipeline1:amd64 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.8.6-1) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-5ubuntu1) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:amd64 (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:amd64 (1:5.32-1) ... Setting up libgraphite2-3:amd64 (1.3.10-2) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libncurses5-dev:amd64 (6.0+20160625-1ubuntu1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:amd64 (1.5.2-0ubuntu5) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up liburi-perl (1.72-1) ... Processing triggers for systemd (234-2ubuntu12) ... Setting up libhtml-parser-perl (3.72-3build1) ... Setting up libgfortran-7-dev:amd64 (7.2.0-12ubuntu1) ... Setting up libreadline-dev:amd64 (7.0-0ubuntu2) ... Setting up gfortran-7 (7.2.0-12ubuntu1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-5ubuntu3) ... Setting up libpcre32-3:amd64 (2:8.39-5ubuntu3) ... Setting up libnet-http-perl (6.16-1) ... Setting up icu-devtools (59.1-3ubuntu1) ... Setting up libpcre16-3:amd64 (2:8.39-5ubuntu3) ... Setting up libtcl8.6:amd64 (8.6.7+dfsg-1) ... Setting up libthai-data (0.1.26-3) ... Setting up liblzma-dev:amd64 (5.2.2-1.3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu3) ... Setting up libcurl4-gnutls-dev:amd64 (7.55.1-1ubuntu2.1) ... Setting up hdf5-helpers (1.10.0-patch1+docs-4) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:amd64 (2.7.14-2ubuntu2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libsz2:amd64 (0.3.2-2) ... Setting up netbase (5.4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:amd64 (2:8.39-5ubuntu3) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libnet-ssleay-perl (1.80-1build1) ... Setting up liblapack3:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libaec-dev:amd64 (0.3.2-2) ... Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libharfbuzz0b:amd64 (1.4.2-1build1) ... Setting up libtiff5:amd64 (4.0.8-5) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.26-3) ... Setting up libicu-dev (59.1-3ubuntu1) ... Setting up file (1:5.32-1) ... Setting up libio-socket-ssl-perl (2.050-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libpython-stdlib:amd64 (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libnetcdf13 (1:4.5.0-1) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.11-1) ... Setting up libpng-dev:amd64 (1.6.34-1) ... Setting up libxcb1:amd64 (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up liblapack-dev:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up netcdf-bin (1:4.5.0-1) ... Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu2) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libhdf5-cpp-100:amd64 (1.10.0-patch1+docs-4) ... Setting up libxcb-render0:amd64 (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libx11-6:amd64 (2:1.6.4-3) ... Setting up libhdf5-dev (1.10.0-patch1+docs-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python-pkg-resources (36.2.7-2) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up python-six (1.11.0-1) ... Setting up python-scour (0.32-2) ... Setting up libxcb-shm0:amd64 (1.12-1ubuntu1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libnetcdf-dev (1:4.5.0-1) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up xauth (1:1.0.9-1ubuntu2) ... Setting up libpango-1.0-0:amd64 (1.40.12-1) ... Setting up libcairo2:amd64 (1.14.10-1ubuntu1) ... Setting up libtk8.6:amd64 (8.6.7-1ubuntu1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.12-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.12-1) ... Setting up r-base-core (3.4.2-1ubuntu2) ... Creating config file /etc/R/Renviron with new version Setting up dh-autoreconf (14) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libwww-perl (6.15-2) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up libxml-parser-perl (2.44-2build3) ... Setting up intltool (0.51.0-4) ... Setting up dh-translations (131) ... Setting up cdbs (0.4.151ubuntu2) ... Setting up r-base-dev (3.4.2-1ubuntu2) ... Setting up sbuild-build-depends-r-cran-ncdf4-dummy (0.invalid.0) ... (Reading database ... 19035 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (234-2ubuntu12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5.1 apt-transport-https_1.5.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1 base-files_10ubuntu1 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-x86-64-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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liblsan0_7.2.0-12ubuntu1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libmpx2_7.2.0-12ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncurses5-dev_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnet-http-perl_6.16-1 libnet-ssleay-perl_1.80-1build1 libnetcdf-dev_1:4.5.0-1 libnetcdf13_1:4.5.0-1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpango-1.0-0_1.40.12-1 libpangocairo-1.0-0_1.40.12-1 libpangoft2-1.0-0_1.40.12-1 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpcre16-3_2:8.39-5ubuntu3 libpcre3_2:8.39-5ubuntu3 libpcre3-dev_2:8.39-5ubuntu3 libpcre32-3_2:8.39-5ubuntu3 libpcrecpp0v5_2:8.39-5ubuntu3 libperl5.26_5.26.0-8ubuntu1 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-2 libpython-stdlib_2.7.14-2ubuntu1 libpython2.7-minimal_2.7.14-2ubuntu2 libpython2.7-stdlib_2.7.14-2ubuntu2 libquadmath0_7.2.0-12ubuntu1 libreadline-dev_7.0-0ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-1 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.30.1-0ubuntu4 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsystemd0_234-2ubuntu12 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libtcl8.6_8.6.7+dfsg-1 libthai-data_0.1.26-3 libthai0_0.1.26-3 libtiff5_4.0.8-5 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1ubuntu1 libtinfo5_6.0+20160625-1ubuntu1 libtk8.6_8.6.7-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-12ubuntu1 libubsan0_7.2.0-12ubuntu1 libudev1_234-2ubuntu12 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.72-1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwind0-heimdal_7.4.0.dfsg.1-2 libwww-perl_6.15-2 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxcb-render0_1.12-1ubuntu1 libxcb-shm0_1.12-1ubuntu1 libxcb1_1.12-1ubuntu1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml-parser-perl_2.44-2build3 libxml2_2.9.4+dfsg1-5ubuntu1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 netbase_5.4 netcdf-bin_1:4.5.0-1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.0-8ubuntu1 perl-base_5.26.0-8ubuntu1 perl-modules-5.26_5.26.0-8ubuntu1 perl-openssl-defaults_3 pinentry-curses_1.0.0-2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python-pkg-resources_36.2.7-2 python-scour_0.32-2 python-six_1.11.0-1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 r-base-core_3.4.2-1ubuntu2 r-base-dev_3.4.2-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-ncdf4-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2ubuntu12 systemd-sysv_234-2ubuntu12 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 unzip_6.0-21ubuntu1 util-linux_2.30.1-0ubuntu4 x11-common_1:7.7+19ubuntu3 xauth_1:1.0.9-1ubuntu2 xdg-utils_1.1.1-1ubuntu3 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Oct 27 08:15:31 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-ncdf4_1.15-1build3.dsc dpkg-source: info: extracting r-cran-ncdf4 in r-cran-ncdf4-1.15 dpkg-source: info: unpacking r-cran-ncdf4_1.15.orig.tar.gz dpkg-source: info: unpacking r-cran-ncdf4_1.15-1build3.debian.tar.xz dpkg-source: info: applying 01_no_rpath.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13631355 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13631355 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13631355 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-ncdf4 dpkg-buildpackage: info: source version 1.15-1build3 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build r-cran-ncdf4-1.15 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build test -x debian/rules mkdir -p "." CDBS WARNING: DEB_DH_MD5SUMS_ARGS is deprecated since 0.4.85 (cd tools && ./regenerate) rm: cannot remove '../Makefile': No such file or directory rm: cannot remove '../src/Makevars': No such file or directory fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." CDBS WARNING: DEB_DH_MD5SUMS_ARGS is deprecated since 0.4.85 (cd tools && ./regenerate) rm: cannot remove '../Makefile': No such file or directory rm: cannot remove '../src/Makevars': No such file or directory dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.4.2-1ubuntu2), r-api-3.4" >> debian/r-cran-ncdf4.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a -n 20 \ -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" \ R CMD INSTALL -l /<>/debian/r-cran-ncdf4/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Fri, 27 Oct 2017 10:15:27 +0200\"" \ ; \ else \ R CMD INSTALL -l /<>/debian/r-cran-ncdf4/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Fri, 27 Oct 2017 10:15:27 +0200\"" \ ; \ fi * installing *source* package ‘ncdf4’ ... files ‘configure’, ‘tools/aclocal.m4’, ‘tools/configure.ac’ have the wrong MD5 checksums configure.ac: starting checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.5.0 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial --libs -> -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl --has-c++ -> no --cxx -> --has-c++4 -> no --cxx4 -> --has-fortran-> no --has-dap -> yes --has-dap2 -> yes --has-dap4 -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging-> no --has-pnetcdf-> no --has-szlib -> no --has-cdf5 -> no --has-parallel-> no --prefix -> /usr --includedir-> /usr/include --libdir -> /usr/lib/x86_64-linux-gnu --version -> netCDF 4.5.0 --- netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial Netcdf library version: netCDF 4.5.0 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: creating ./config.status config.status: creating src/Makevars ********************** Results of ncdf4 package configure ******************* netCDF v4 CPP flags = -I/usr/include -I/usr/include/hdf5/serial netCDF v4 LD flags = -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl netCDF v4 runtime path = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial netCDF C compiler used = /usr/bin/cc R C compiler used = gcc -std=gnu99 -g -O2 -fdebug-prefix-map=/build/r-base-5dBja4/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g ****************************************************************************** checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed netcdf cc arg1: /usr/bin/cc R cc arg1: gcc R_IS_GCC: 1 R_IS_CLANG: 0 NETCDF_IS_GCC: 1 NETCDF_IS_CLANG: 0 emit_warning: 0 ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5dBja4/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ncdf.c -o ncdf.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5dBja4/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5dBja4/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ncdf3.c -o ncdf3.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-5dBja4/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c src_ncdf4.c -o src_ncdf4.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ncdf4.so ncdf.o ncdf2.o ncdf3.o src_ncdf4.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-ncdf4/usr/lib/R/site-library/ncdf4/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (ncdf4) rm -vf /<>/debian/r-cran-ncdf4/usr/lib/R/site-library/R.css \ /<>/debian/r-cran-ncdf4/usr/lib/R/site-library/ncdf4/COPYING \ /<>/debian/r-cran-ncdf4/usr/lib/R/site-library/ncdf4/LICENSE.txt \ /<>/debian/r-cran-ncdf4/usr/lib/R/site-library/ncdf4/LICENSE if test -f debian/overrides; then \ install -d /<>/debian/r-cran-ncdf4/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /<>/debian/r-cran-ncdf4/usr/share/lintian/overrides/r-cran-ncdf4; \ fi Adding cdbs dependencies to debian/r-cran-ncdf4.substvars dh_installdirs -pr-cran-ncdf4 \ dh_installdocs -pr-cran-ncdf4 dh_installexamples -pr-cran-ncdf4 dh_installman -pr-cran-ncdf4 dh_installinfo -pr-cran-ncdf4 dh_installmenu -pr-cran-ncdf4 dh_installcron -pr-cran-ncdf4 dh_systemd_enable -pr-cran-ncdf4 dh_installinit -pr-cran-ncdf4 dh_installdebconf -pr-cran-ncdf4 dh_installemacsen -pr-cran-ncdf4 dh_installcatalogs -pr-cran-ncdf4 dh_installpam -pr-cran-ncdf4 dh_installlogrotate -pr-cran-ncdf4 dh_installlogcheck -pr-cran-ncdf4 dh_installchangelogs -pr-cran-ncdf4 ./ChangeLog dh_installudev -pr-cran-ncdf4 dh_lintian -pr-cran-ncdf4 dh_bugfiles -pr-cran-ncdf4 dh_install -pr-cran-ncdf4 dh_systemd_start -pr-cran-ncdf4 dh_link -pr-cran-ncdf4 dh_installmime -pr-cran-ncdf4 dh_installgsettings -pr-cran-ncdf4 dh_strip -pr-cran-ncdf4 dh_strip_nondeterminism -pr-cran-ncdf4 dh_compress -pr-cran-ncdf4 dh_fixperms -pr-cran-ncdf4 dh_makeshlibs -pr-cran-ncdf4 dh_installdeb -pr-cran-ncdf4 dh_perl -pr-cran-ncdf4 dh_shlibdeps -pr-cran-ncdf4 dh_gencontrol -pr-cran-ncdf4 # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-cran-ncdf4 ; fi dh_md5sums -pr-cran-ncdf4 --exclude=HDF5_COPYING DH_ALWAYS_EXCLUDE=HDF5_COPYING dh_builddeb -pr-cran-ncdf4 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing r-cran-ncdf4 (in debian/r-cran-ncdf4); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-ncdf4-dbgsym (in debian/.debhelper/r-cran-ncdf4/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-ncdf4/DEBIAN/control, package r-cran-ncdf4, directory debian/r-cran-ncdf4 .. removing usr/share/doc/r-cran-ncdf4/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-ncdf4 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-ncdf4' in '../r-cran-ncdf4_1.15-1build3_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-cran-ncdf4/dbgsym-root/DEBIAN/control, package r-cran-ncdf4-dbgsym, directory debian/.debhelper/r-cran-ncdf4/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-ncdf4-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-ncdf4-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-ncdf4/r-cran-ncdf4-dbgsym_1.15-1build3_amd64.deb'. Renaming r-cran-ncdf4-dbgsym_1.15-1build3_amd64.deb to r-cran-ncdf4-dbgsym_1.15-1build3_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-cran-ncdf4_1.15-1build3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build r-cran-ncdf4-1.15 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171027-0929 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-ncdf4_1.15-1build3_amd64.changes: ---------------------------------------- Format: 1.8 Date: Fri, 27 Oct 2017 10:15:27 +0200 Source: r-cran-ncdf4 Binary: r-cran-ncdf4 Architecture: amd64 Version: 1.15-1build3 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: r-cran-ncdf4 - GNU R interface to Unidata netCDF format data files Changes: r-cran-ncdf4 (1.15-1build3) bionic; urgency=medium . * Rebuild against new libnetcdf13. Checksums-Sha1: af3b57d5eaaae8309233d3bc0f262a5449cd0a7f 32156 r-cran-ncdf4-dbgsym_1.15-1build3_amd64.ddeb 6f21b41f7e491f4655742adf0581128d6b8b96cc 10119 r-cran-ncdf4_1.15-1build3_amd64.buildinfo e23c1bc12478e8068546ab92c74b22310ad0abab 147612 r-cran-ncdf4_1.15-1build3_amd64.deb Checksums-Sha256: 8199c9faffb91ca6158d6b167351fc9609663c2f4da6e63a031b09bbf5a775c5 32156 r-cran-ncdf4-dbgsym_1.15-1build3_amd64.ddeb 9d545b40a870173c6fbbc30d529b57d973b5004017bea2025afd45c37dbdbe38 10119 r-cran-ncdf4_1.15-1build3_amd64.buildinfo c905554b5ea982118132e55401c09d64bcf7b0a49e735bd5b08598c05267de11 147612 r-cran-ncdf4_1.15-1build3_amd64.deb Files: d9f72bd91494149afaf661a471a0d5f8 32156 debug optional r-cran-ncdf4-dbgsym_1.15-1build3_amd64.ddeb 9ca45bcfb20ba2dfbcd57ee6a116ec9e 10119 gnu-r optional r-cran-ncdf4_1.15-1build3_amd64.buildinfo 0e389246aae4819b354568619677d0fe 147612 gnu-r optional r-cran-ncdf4_1.15-1build3_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-ncdf4_1.15-1build3_amd64.deb ----------------------------------- new debian package, version 2.0. size 147612 bytes: control archive=1492 bytes. 1007 bytes, 19 lines control 1685 bytes, 22 lines md5sums Package: r-cran-ncdf4 Version: 1.15-1build3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 216 Depends: r-base-core (>= 3.4.2-1ubuntu2), r-api-3.4, libc6 (>= 2.4), libnetcdf13 (>= 4.0.1) Section: gnu-r Priority: optional Homepage: http://cran.r-project.org/web/packages/ncdf4/index.html Description: GNU R interface to Unidata netCDF format data files High-level R interface to data files written using Unidata's netCDF library (version 4 or earlier), which are binary data files that are portable across platforms and include metadata information in addition to the data sets. Using this package, netCDF files (either version 4 or "classic" version 3) can be opened and data sets read in easily. It is also easy to create new netCDF dimensions, variables, and files, in either version 3 or 4 format, and manipulate existing netCDF files. drwxr-xr-x root/root 0 2017-10-27 08:15 ./ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/ -rw-r--r-- root/root 1558 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/DESCRIPTION -rw-r--r-- root/root 1082 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/INDEX drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/ -rw-r--r-- root/root 1072 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/Rd.rds -rw-r--r-- root/root 112 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/features.rds -rw-r--r-- root/root 1054 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/hsearch.rds -rw-r--r-- root/root 596 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/links.rds -rw-r--r-- root/root 312 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/nsInfo.rds -rw-r--r-- root/root 1134 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/Meta/package.rds -rw-r--r-- root/root 243 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/NAMESPACE drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/R/ -rw-r--r-- root/root 1056 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/R/ncdf4 -rw-r--r-- root/root 49067 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/R/ncdf4.rdb -rw-r--r-- root/root 946 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/R/ncdf4.rdx drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/ -rw-r--r-- root/root 1431 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/AnIndex -rw-r--r-- root/root 511 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/aliases.rds -rw-r--r-- root/root 70085 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/ncdf4.rdb -rw-r--r-- root/root 555 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/ncdf4.rdx -rw-r--r-- root/root 276 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/help/paths.rds drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/html/ -rw-r--r-- root/root 3213 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/html/00Index.html -rw-r--r-- root/root 1335 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/html/R.css drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/libs/ -rw-r--r-- root/root 47720 2017-10-27 08:15 ./usr/lib/R/site-library/ncdf4/libs/ncdf4.so drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/share/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-27 08:15 ./usr/share/doc/r-cran-ncdf4/ -rw-r--r-- root/root 466 2017-10-27 08:15 ./usr/share/doc/r-cran-ncdf4/changelog.Debian.gz -rw-r--r-- root/root 1089 2015-12-15 13:17 ./usr/share/doc/r-cran-ncdf4/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 1588 Build-Time: 27 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 40 Job: r-cran-ncdf4_1.15-1build3.dsc Machine Architecture: amd64 Package: r-cran-ncdf4 Package-Time: 69 Source-Version: 1.15-1build3 Space: 1588 Status: successful Version: 1.15-1build3 -------------------------------------------------------------------------------- Finished at 20171027-0929 Build needed 00:01:09, 1588k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 Scanning for processes to kill in build PACKAGEBUILD-13631355 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 Stopping target for build PACKAGEBUILD-13631355 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13631355 Removing build PACKAGEBUILD-13631355