https://launchpad.net/ubuntu/+source/python-biopython/1.79+dfsg-3/+build/23506605 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-113 5.4.0-105-generic #119-Ubuntu SMP Mon Mar 7 18:49:24 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_210~545~ubuntu20.04.1 python3-lpbuildd_210~545~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 28 Mar 09:19:05 ntpdate[1762]: adjust time server 10.131.248.1 offset -0.002596 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23506605 --image-type chroot /home/buildd/filecache-default/b0c128df17a460089eca69348f06144377489985 Creating target for build PACKAGEBUILD-23506605 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23506605 Starting target for build PACKAGEBUILD-23506605 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23506605 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23506605 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23506605 Updating target for build PACKAGEBUILD-23506605 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1380 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [14.1 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5650 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [483 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [179 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [561 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [201 kB] Fetched 23.7 MB in 3s (8393 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: gcc-12-base libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libprocps8 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lsb-base lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses pkgbinarymangler procps readline-common rpcsvc-proto sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata usrmerge util-linux xz-utils zlib1g 169 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 109 MB of archives. After this operation, 304 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libnsl-dev amd64 1.3.0-2build2 [71.3 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt-dev amd64 1:4.4.27-1 [112 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 libc6-dev amd64 2.35-0ubuntu3 [2099 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 libc-dev-bin amd64 2.35-0ubuntu3 [20.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtirpc-common all 1.3.2-2build1 [7616 B] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtirpc-dev amd64 1.3.2-2build1 [192 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libssl3 amd64 3.0.2-0ubuntu1 [1899 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 libk5crypto3 amd64 1.19.2-2 [86.4 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5support0 amd64 1.19.2-2 [32.4 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5-3 amd64 1.19.2-2 [356 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libgssapi-krb5-2 amd64 1.19.2-2 [144 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libc6 amd64 2.35-0ubuntu3 [3235 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 libc-bin amd64 2.35-0ubuntu3 [706 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 libperl5.34 amd64 5.34.0-3ubuntu1 [4809 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main amd64 perl amd64 5.34.0-3ubuntu1 [232 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 perl-base amd64 5.34.0-3ubuntu1 [1762 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 bzip2 amd64 1.0.8-5build1 [34.8 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libbz2-1.0 amd64 1.0.8-5build1 [34.4 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit-common all 1:3.0.7-1build1 [4726 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libcap-ng0 amd64 0.7.9-2.2build3 [11.6 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit1 amd64 1:3.0.7-1build1 [46.9 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam0g amd64 1.4.0-11ubuntu2 [60.8 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt1 amd64 1:4.4.27-1 [82.0 kB] Get:26 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu3 [722 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm6 amd64 1.23-1 [33.9 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm-compat4 amd64 1.23-1 [6606 B] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu9 [58.2 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 debconf all 1.5.79ubuntu1 [126 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 libcom-err2 amd64 1.46.5-2ubuntu1 [9846 B] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libkeyutils1 amd64 1.6.1-2ubuntu3 [10.4 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtirpc3 amd64 1.3.2-2build1 [81.1 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libnsl2 amd64 1.3.0-2build2 [42.3 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 linux-libc-dev amd64 5.15.0-23.23 [1323 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-12-base amd64 12-20220319-1ubuntu1 [18.9 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-s1 amd64 12-20220319-1ubuntu1 [54.2 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 base-files amd64 12ubuntu3 [63.4 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 debianutils amd64 5.5-1ubuntu2 [107 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 bash amd64 5.1-6ubuntu1 [769 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdutils amd64 1:2.37.2-4ubuntu3 [81.5 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 coreutils amd64 8.32-4.1ubuntu1 [1438 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libgpg-error0 amd64 1.43-3 [69.7 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgcrypt20 amd64 1.9.4-3ubuntu3 [515 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 liblz4-1 amd64 1.9.3-2build2 [56.9 kB] Get:46 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 liblzma5 amd64 5.2.5-2build2 [99.6 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++6 amd64 12-20220319-1ubuntu1 [699 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 libargon2-1 amd64 0~20171227-0.3 [19.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 libblkid1 amd64 2.37.2-4ubuntu3 [104 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpcre2-8-0 amd64 10.39-3build1 [220 kB] Get:51 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libselinux1 amd64 3.3-1build2 [74.6 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libudev1 amd64 249.11-0ubuntu2 [77.1 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1ubuntu4 [139 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libjson-c5 amd64 0.15-2build4 [33.3 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libuuid1 amd64 2.37.2-4ubuntu3 [24.2 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libcryptsetup12 amd64 2:2.4.3-1ubuntu1 [211 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libgmp10 amd64 2:6.2.1+dfsg-3ubuntu1 [250 kB] Get:58 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libnettle8 amd64 3.7.3-1build2 [159 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libhogweed6 amd64 3.7.3-1build2 [199 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libunistring2 amd64 1.0-1 [554 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libidn2-0 amd64 2.3.2-2build1 [66.4 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main amd64 libffi8 amd64 3.4.2-4 [22.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libp11-kit0 amd64 0.24.0-6build1 [252 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtasn1-6 amd64 4.18.0-4build1 [42.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 libgnutls30 amd64 3.7.3-4ubuntu1 [968 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-sysv amd64 249.11-0ubuntu2 [10.5 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd-timesyncd amd64 249.11-0ubuntu2 [31.2 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libacl1 amd64 2.3.1-1 [16.2 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libapparmor1 amd64 3.0.4-2ubuntu2 [38.7 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libip4tc2 amd64 1.8.7-1ubuntu5 [19.7 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libzstd1 amd64 1.4.8+dfsg-3build1 [324 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main amd64 libkmod2 amd64 29-1ubuntu1 [48.0 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 libmount1 amd64 2.37.2-4ubuntu3 [122 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 libseccomp2 amd64 2.5.3-2ubuntu2 [47.4 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 login amd64 1:4.8.1-2ubuntu2 [187 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main amd64 util-linux amd64 2.37.2-4ubuntu3 [1064 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 mount amd64 2.37.2-4ubuntu3 [114 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 systemd amd64 249.11-0ubuntu2 [4554 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main amd64 libsystemd0 amd64 249.11-0ubuntu2 [317 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main amd64 libxxhash0 amd64 0.8.1-1 [27.3 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main amd64 libapt-pkg6.0 amd64 2.4.3 [904 kB] Get:82 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 tar amd64 1.34+dfsg-1build3 [295 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 dpkg amd64 1.21.1ubuntu1 [1254 kB] Get:84 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-3build1 [92.0 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 diffutils amd64 1:3.8-0ubuntu2 [172 kB] Get:86 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 findutils amd64 4.8.0-1ubuntu3 [332 kB] Get:87 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 grep amd64 3.7-1build1 [156 kB] Get:88 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 gzip amd64 1.10-4ubuntu3 [95.6 kB] Get:89 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 hostname amd64 3.23ubuntu2 [11.4 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses6 amd64 6.3-2 [111 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 libncursesw6 amd64 6.3-2 [149 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 libtinfo6 amd64 6.3-2 [104 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-bin amd64 6.3-2 [184 kB] Get:94 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sed amd64 4.8-1ubuntu2 [188 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebconfclient0 amd64 0.261ubuntu1 [7198 B] Get:96 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 base-passwd amd64 3.5.52build1 [49.1 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main amd64 init-system-helpers all 1.62 [38.5 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-base all 6.3-2 [20.1 kB] Get:99 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 lsb-base all 11.1.0ubuntu4 [12.3 kB] Get:100 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Get:110 http://ftpmaster.internal/ubuntu jammy/main amd64 libext2fs2 amd64 1.46.5-2ubuntu1 [209 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main amd64 e2fsprogs amd64 1.46.5-2ubuntu1 [591 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main amd64 init amd64 1.62 [5412 B] Get:113 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libattr1 amd64 1:2.5.1-1build1 [13.3 kB] Get:114 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcap2 amd64 1:2.44-1build3 [18.1 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main amd64 libpam-runtime all 1.4.0-11ubuntu2 [40.3 kB] Get:116 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpcre3 amd64 2:8.39-13build5 [245 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main amd64 libsmartcols1 amd64 2.37.2-4ubuntu3 [51.2 kB] Get:118 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtsan0 amd64 11.2.0-19ubuntu1 [2261 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main amd64 libgomp1 amd64 12-20220319-1ubuntu1 [126 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main amd64 libitm1 amd64 12-20220319-1ubuntu1 [30.2 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main amd64 libatomic1 amd64 12-20220319-1ubuntu1 [10.4 kB] Get:122 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libasan6 amd64 11.2.0-19ubuntu1 [2283 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main amd64 liblsan0 amd64 12-20220319-1ubuntu1 [1069 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main amd64 libubsan1 amd64 12-20220319-1ubuntu1 [976 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main amd64 libquadmath0 amd64 12-20220319-1ubuntu1 [154 kB] Get:126 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 g++-11 amd64 11.2.0-19ubuntu1 [11.4 MB] Get:127 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 gcc-11 amd64 11.2.0-19ubuntu1 [20.1 MB] Get:128 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libstdc++-11-dev amd64 11.2.0-19ubuntu1 [2083 kB] Get:129 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgcc-11-dev amd64 11.2.0-19ubuntu1 [2526 kB] Get:130 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libisl23 amd64 0.24-2build1 [727 kB] Get:131 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmpfr6 amd64 4.1.0-3build3 [1425 kB] Get:132 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmpc3 amd64 1.2.1-2build1 [46.9 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main amd64 libcc1-0 amd64 12-20220319-1ubuntu1 [47.2 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf0 amd64 2.38-3ubuntu1 [103 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf-nobfd0 amd64 2.38-3ubuntu1 [106 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-x86-64-linux-gnu amd64 2.38-3ubuntu1 [2328 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main amd64 libbinutils amd64 2.38-3ubuntu1 [662 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils amd64 2.38-3ubuntu1 [3186 B] Get:139 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-common amd64 2.38-3ubuntu1 [221 kB] Get:140 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 cpp-11 amd64 11.2.0-19ubuntu1 [9966 kB] Get:141 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 gcc-11-base amd64 11.2.0-19ubuntu1 [20.8 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main amd64 libprocps8 amd64 2:3.3.17-6ubuntu2 [36.0 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main amd64 libss2 amd64 1.46.5-2ubuntu1 [12.3 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main amd64 mawk amd64 1.3.4.20200120-3 [104 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/main amd64 procps amd64 2:3.3.17-6ubuntu2 [377 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/main amd64 usrmerge all 25ubuntu2 [54.7 kB] Get:148 http://ftpmaster.internal/ubuntu jammy-proposed/main 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Setting up tzdata (2022a-0ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Mar 28 09:19:30 UTC 2022. Universal Time is now: Mon Mar 28 09:19:30 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.28-1ubuntu1) ... Setting up libtirpc-dev:amd64 (1.3.2-2build1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... Setting up make (4.3-4.1build1) ... Setting up libmpfr6:amd64 (4.1.0-3build3) ... Setting up libncurses6:amd64 (6.3-2) ... Setting up xz-utils (5.2.5-2build2) ... Setting up libquadmath0:amd64 (12-20220319-1ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-3build5) ... Setting up libmpc3:amd64 (1.2.1-2build1) ... Setting up systemd-timesyncd (249.11-0ubuntu2) ... Setting up libatomic1:amd64 (12-20220319-1ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up patch (2.7.6-7build2) ... Setting up libss2:amd64 (1.46.5-2ubuntu1) ... Setting up libncursesw6:amd64 (6.3-2) ... Setting up logsave (1.46.5-2ubuntu1) ... Setting up libubsan1:amd64 (12-20220319-1ubuntu1) ... Setting up advancecomp (2.1-2.1ubuntu2) ... Setting up libnsl-dev:amd64 (1.3.0-2build2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up mawk (1.3.4.20200120-3) ... Setting up liblockfile1:amd64 (1.17-1build2) ... Setting up libbinutils:amd64 (2.38-3ubuntu1) ... Setting up libisl23:amd64 (0.24-2build1) ... Setting up libc-dev-bin (2.35-0ubuntu3) ... Setting up openssl (3.0.2-0ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1) ... Setting up libcc1-0:amd64 (12-20220319-1ubuntu1) ... Setting up liblsan0:amd64 (12-20220319-1ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.17-6ubuntu2) ... Setting up libitm1:amd64 (12-20220319-1ubuntu1) ... Setting up libgdbm6:amd64 (1.23-1) ... Setting up libtsan0:amd64 (11.2.0-19ubuntu1) ... Setting up libctf0:amd64 (2.38-3ubuntu1) ... Setting up pinentry-curses (1.1.1-1build2) ... Setting up cpp-11 (11.2.0-19ubuntu1) ... Setting up libreadline8:amd64 (8.1.2-1) ... Setting up e2fsprogs (1.46.5-2ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up optipng (0.7.7-2build1) ... Setting up lockfile-progs (0.1.19build1) ... Setting up libgdbm-compat4:amd64 (1.23-1) ... Setting up libgcc-11-dev:amd64 (11.2.0-19ubuntu1) ... Setting up procps (2:3.3.17-6ubuntu2) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.d/README.sysctl ... Setting up gpgconf (2.2.27-3ubuntu2) ... Setting up libc6-dev:amd64 (2.35-0ubuntu3) ... Setting up gpg (2.2.27-3ubuntu2) ... Setting up binutils-x86-64-linux-gnu (2.38-3ubuntu1) ... Setting up libperl5.34:amd64 (5.34.0-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu2) ... Setting up pkgbinarymangler (149) ... Setting up binutils (2.38-3ubuntu1) ... Setting up perl (5.34.0-3ubuntu1) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-19ubuntu1) ... Setting up gcc-11 (11.2.0-19ubuntu1) ... Setting up g++-11 (11.2.0-19ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Setting up build-essential (12.9ubuntu3) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23506605 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-23506605 --arch=amd64 --dist=jammy-proposed --nolog -A python-biopython_1.79+dfsg-3.dsc Initiating build PACKAGEBUILD-23506605 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-105-generic #119-Ubuntu SMP Mon Mar 7 18:49:24 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-113.buildd +==============================================================================+ | python-biopython 1.79+dfsg-3 (amd64) Mon, 28 Mar 2022 09:19:33 +0000 | +==============================================================================+ Package: python-biopython Version: 1.79+dfsg-3 Source Version: 1.79+dfsg-3 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23506605/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-uy01tu/resolver-WhT9mX' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.79+dfsg-3.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biopython-uy01tu/python-biopython-1.79+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-uy01tu' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, raxml, samtools, t-coffee, wise, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, phyml, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, raxml, samtools, t-coffee, wise, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [652 B] Get:5 copy:/<>/apt_archive ./ Packages [684 B] Fetched 2299 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea ibverbs-providers intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libbrotli1 libbsd0 libcairo2 libcbor0.8 libcifpp-data libcifpp2 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu70 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenjp2-7 libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpdfbox-java libpipeline1 libpixman-1-0 libpmix2 libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtk8.6 libtool libuchardet0 libucx0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client phylip phyml po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal raxml samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo clustalx seaview dh-make flit python3-build python3-tomli python3-installer emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils pciutils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-venv python-attr-doc python-cycler-doc python-lxml-doc dvipng ffmpeg fonts-staypuft gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2 default-mysql-server | virtual-mysql-server python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc python3-pytest python-pil-doc python-psycopg2-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support cwltool boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby xauth libmail-sendmail-perl python3-bs4 python3-html5lib python3-yaml python3-olefile python3-sparqlwrapper amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa texlive-plain-generic tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea ibverbs-providers intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libbrotli1 libbsd0 libcairo2 libcbor0.8 libcifpp-data libcifpp2 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu70 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenjp2-7 libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpdfbox-java libpipeline1 libpixman-1-0 libpmix2 libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtk8.6 libtool libuchardet0 libucx0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client phylip phyml po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal raxml samtools sbuild-build-depends-main-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils zlib1g-dev 0 upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 302 MB of archives. After this operation, 1438 MB of additional disk space will be used. 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jammy/main amd64 libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/main amd64 liblapack3 amd64 3.10.0-2ubuntu1 [2504 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-10 [29.9 kB] Get:186 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 liblcms2-2 amd64 2.12~rc1-2build2 [159 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmbedcrypto7 amd64 2.28.0-1 [204 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmbedx509-1 amd64 2.28.0-1 [47.3 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmbedtls14 amd64 2.28.0-1 [82.8 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/main amd64 libpciaccess0 amd64 0.16-3 [19.1 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu1 [11.5 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe amd64 ocl-icd-libopencl1 amd64 2.2.14-3 [39.1 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhwloc-plugins amd64 2.7.0-2 [15.6 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpmix2 amd64 4.1.2-2ubuntu1 [604 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe amd64 libucx0 amd64 1.12.1~rc2-1 [891 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe amd64 libopenmpi3 amd64 4.1.2-2ubuntu1 [2594 kB] Get:197 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3.10 amd64 3.10.4-1ubuntu1 [1951 kB] Get:198 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9 [164 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3.10-dev amd64 3.10.4-1ubuntu1 [4759 kB] Get:200 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpython3-dev amd64 3.10.4-0ubuntu2 [7242 B] Get:201 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[12.3 MB] Get:211 http://ftpmaster.internal/ubuntu jammy/universe amd64 openmpi-common all 4.1.2-2ubuntu1 [162 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/universe amd64 openmpi-bin amd64 4.1.2-2ubuntu1 [116 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe amd64 phylip amd64 1:3.697+dfsg-2 [906 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/universe amd64 phyml amd64 3:3.3.20211231-1 [971 kB] Get:215 http://ftpmaster.internal/ubuntu jammy/universe amd64 prank amd64 0.0.170427+dfsg-3 [396 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/universe amd64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/universe amd64 probcons amd64 1.12-14 [125 kB] Get:218 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 python-matplotlib-data all 3.5.1-2build1 [2942 kB] Get:219 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 python3-all amd64 3.10.4-0ubuntu2 [914 B] Get:220 http://ftpmaster.internal/ubuntu 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Setting up libxi6:amd64 (2:1.8-1build1) ... Setting up python3-lz4 (3.1.3+dfsg-1build3) ... Setting up python3-unicodedata2 (14.0.0+ds-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:amd64 (8.6.12-1build1) ... Setting up python3-all (3.10.4-0ubuntu2) ... Setting up debhelper (13.6ubuntu1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up dssp (4.0.4-1) ... Setting up ghostscript (9.55.0~dfsg1-0ubuntu5) ... Setting up libhwloc-plugins:amd64 (2.7.0-2) ... Setting up python3-networkx (2.4-4ubuntu2) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up samtools (1.13-4) ... Setting up python3-fs (2.4.12-1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up python3-packaging (21.3-1) ... Setting up libpython3-all-dev:amd64 (3.10.4-0ubuntu2) ... Setting up python3-dev (3.10.4-0ubuntu2) ... Setting up python3-unittest2 (1.1.0-9) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode Setting up python3-numpy (1:1.21.5-1build2) ... Setting up texlive-binaries (2021.20210626.59705-1build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lxml:amd64 (4.8.0-1build1) ... Setting up texlive-base (2021.20220204-1) ... /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-all-dev (3.10.4-0ubuntu2) ... Setting up libfabric1:amd64 (1.11.0-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build2) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up libpmix2:amd64 (4.1.2-2ubuntu1) ... Setting up libopenmpi3:amd64 (4.1.2-2ubuntu1) ... Setting up blt (2.5.3+dfsg-4.1build2) ... Setting up python3-tk:amd64 (3.10.4-0ubuntu1) ... Setting up python3-mmtf (1.1.2-3) ... Setting up texlive-latex-base (2021.20220204-1) ... Setting up python3-pil.imagetk:amd64 (9.0.1-1build1) ... Setting up texlive-latex-recommended (2021.20220204-1) ... Setting up hevea (2.35-1build1) ... Setting up texlive-pictures (2021.20220204-1) ... Setting up texlive-fonts-recommended (2021.20220204-1) ... Setting up openmpi-bin (4.1.2-2ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20211231-1) ... Setting up texlive-latex-extra (2021.20220204-1) ... Setting up python3-fonttools (4.29.1-2build1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-matplotlib (3.5.1-2build1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-105-generic #119-Ubuntu SMP Mon Mar 7 18:49:24 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38-3ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-19ubuntu1 gcc-11_11.2.0-19ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.2.0-19ubuntu1 libstdc++6_12-20220319-1ubuntu1 linux-libc-dev_5.15.0-23.23 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu2 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-4ubuntu4 autotools-dev_20220109.1 base-files_12ubuntu3 base-passwd_3.5.52build1 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mafft , muscle [i386 amd64 x32] , ncbi-blast+ , phylip , phyml [any-amd64 any-i386] , prank , probcons , python3-networkx , python3-mysqldb , python3-matplotlib , python3-mmtf , python3-pil , python3-rdflib , python3-renderpm , python3-psycopg2 , python3-pygments , python3-scipy , python3-setuptools, python3-unittest2 , raxml [any-amd64 any-i386] , samtools , t-coffee , wise Package-List: python-biopython-doc deb doc optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: 8eff51eb36ef780f81ae7d8679c95b89d0c113a2 9861184 python-biopython_1.79+dfsg.orig.tar.xz 169ab62c43f280ccd1ae28bbb0acd35e06ab1e71 18380 python-biopython_1.79+dfsg-3.debian.tar.xz Checksums-Sha256: cbb9fcc75832a13e4fee36df837395be8396a4843321bba5e7ddc03da8267583 9861184 python-biopython_1.79+dfsg.orig.tar.xz 899776887754c989db0a3119412af93f549e5c6aa5e9698c2c8606503485c219 18380 python-biopython_1.79+dfsg-3.debian.tar.xz Files: 437bb834cc474ff60ebd7dfb8d229d34 9861184 python-biopython_1.79+dfsg.orig.tar.xz 2e5033e8bb9bcb15dd22fa2f6a55ba3e 18380 python-biopython_1.79+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmIjkC8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdozug/6AtWzg1tBtph16ISB8wUf7Q1kl6n7 W2OOI+eyVlYNLwVKNcFHJ7FgNlOblEMlXzNSk8UCm0uTykuq9avFUal6SRErIjHd R0AA03KW3hOVkoCEKJNUwNrl7yvPlBRk1byC3rHfnCB4CJ4wtX3hWls+/VOD7Att qrzA17mdzNNCppWcB7yfg+mMzhSEeqq3jR3VS5+tU49Mc7+qk/Qi4RSvntcD6HV6 n8i3wO1qXKQTpnkbcxck8kZApCwzkmX+jg2rIgQXl6/2Uj9qmqzqDACVK1Abfod/ vX0EquT8bwHcdFiN4cRFpuB3Hkevv/F5Bkr08J1HNzij1aEhHUrgPN5s3YvE4UEC Mq+62+xmrYkPlUEwOTFNAUcyPfqdvIEHeWXWDqCJJB6mgFhjDYphsrR/Stx96d1j VY4rofLty5rr4SJnwCLgTCWCFTlUUtEJQl1NR3iue8jyXpPwPrRF1oj/WWuAw5HO 9Ee/u2BwylyHCoTNVrlAbHCTAAlmJaIrE9sfdBIkR2O0bzK+2pmWDF/j+57DQawT THwSqhoT1I5JLb2EvxRR6jR57DI1T8O86CYFniK6K49VTjAH3rSBbAiQAPR6hkXS mjWyk53qXNDkMJ6h1xzHQCd1efEusxwiPNBPWI1gIGTCFKvtK9Ot1Li3p0OXR6di VRYiQ46bgdvdN2s= =zQqe -----END PGP SIGNATURE----- gpgv: Signature made Sat Mar 5 16:30:39 2022 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./python-biopython_1.79+dfsg-3.dsc dpkg-source: info: extracting python-biopython in /<> dpkg-source: info: unpacking python-biopython_1.79+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.79+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.patch dpkg-source: info: applying adjust-test_GraphicsBitmaps.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23506605 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23506605 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23506605 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.79+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p 3.10 I: pybuild base:237: python3.10 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.10/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.10 I: pybuild base:237: python3.10 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build pybuild --build -i python{version} -p 3.10 I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqFeature.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/File.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/bgzf.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/LogisticRegression.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/Seq.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/MaxEntropy.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/NaiveBayes.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqRecord.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/pairwise2.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/MarkovModel.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/kNN.py -> /<>/.pybuild/cpython3_3.10/build/Bio creating /<>/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Affy creating /<>/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices creating /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO creating /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet creating /<>/.pybuild/cpython3_3.10/build/Bio/Application copying Bio/Application/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Application creating /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast creating /<>/.pybuild/cpython3_3.10/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/CAPS creating /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign creating /<>/.pybuild/cpython3_3.10/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Compass creating /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data creating /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez creating /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy creating /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank creating /<>/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Geo creating /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics creating /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram creating /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML creating /<>/.pybuild/cpython3_3.10/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Medline creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar creating /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus creating /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR creating /<>/.pybuild/cpython3_3.10/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway creating /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/PDB/HSExposure.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype creating /<>/.pybuild/cpython3_3.10/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen creating /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop creating /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction creating /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils creating /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing creating /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat creating /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer creating /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt creating /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML creating /<>/.pybuild/cpython3_3.10/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniGene creating /<>/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniProt creating /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise creating /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/__init__.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/DBUtils.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/Loader.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeq.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/Align/_aligners.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-x86_64-3.10 creating build/temp.linux-x86_64-3.10/Bio creating build/temp.linux-x86_64-3.10/Bio/Align x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.10/Bio/Align/_aligners.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Align/_aligners.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.10/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.10/Python.h:130, from Bio/cpairwise2module.c:16: /usr/include/python3.10/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/cpairwise2module.o -o /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-3.10/Bio/Nexus x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.10/Bio/Nexus/cnexus.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Nexus/cnexus.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-3.10/Bio/PDB creating build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-3.10/Bio/motifs x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.10/Bio/motifs/_pwm.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/motifs/_pwm.o -o /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-3.10/Bio/Cluster x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.10/Bio/Cluster/cluster.o x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.10/Bio/Cluster/clustermodule.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.10/Bio/Cluster/clustermodule.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.10/Bio/PDB/kdtrees.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/PDB/kdtrees.o -o /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-x86_64-3.10/Bio/SeqIO x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-3.10/Bio/SeqIO/_twoBitIO.o x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.10/Bio/SeqIO/_twoBitIO.o -o /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so cd Doc && make make[2]: Entering directory '/<>/Doc' sed "s/\@VERSION\@/1.79/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:744: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:568: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:574: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:581: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:591: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:665: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:786: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:807: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:951: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:949: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1095: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1316: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1774: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1805: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1808: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1809: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1835: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1835: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1864: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2486: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2763: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2763: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:303: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:449: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:465: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: 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Rerun me to get cross-references right. Run, run, again... 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'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 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'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: 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./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:547: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' 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./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined 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./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode 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./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:553: Warning: line too long ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: 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'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 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block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: 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./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in 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Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: 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./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2409: Warning: line too long ./Tutorial/chapter_align.tex:2425: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined 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./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined 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./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] 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[] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' 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text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: 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./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] 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text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: 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./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: 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citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text 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./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text 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failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: 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./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: 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./Tutorial/chapter_learning.tex:290: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: 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Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: 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Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: 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./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: 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./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:653: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:684: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] 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(./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 52 undefined on input line 807. (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF70D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE9D788471CB66B7D26E11C71E228 489B2.pygtex [52]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 851--856 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:SeqIO-sort' on page 53 undefined on input line 86 9. Overfull \hbox (4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [53]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 54 undefined on input line 951. 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [60] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1404. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. 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LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. 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Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 141 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . 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(./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C789D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D49D788471CB66B7D26E11C71E228 489B2.pygtex [178]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B7539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E599D788471CB66B7D26E11C71E228 489B2.pygtex [179]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A8EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D03209D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E79D788471CB66B7D26E11C71E228 489B2.pygtex [180]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E861699D788471CB66B7D26E11C71E228 489B2.pygtex)) [181] (./Tutorial/chapter_pdb.tex Chapter 11. 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[199] [200] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A749D788471CB66B7D26E11C71E228 489B2.pygtex) [201] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D9D788471CB66B7D26E11C71E228 489B2.pygtex) [202] LaTeX Warning: Citation `hamelryck2003b' on page 203 undefined on input line 13 80. LaTeX Warning: Citation `majumdar2005' on page 203 undefined on input line 1381 . ) [203] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C07391D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [204])) [205] (./Tutorial/chapter_phylo.tex Chapter 13. 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[211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. 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LaTeX Warning: Citation `dehoon2004' on page 245 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 245 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 245 undefined on input line 30. [245] [246] [247] LaTeX Warning: Citation `snedecor1989' on page 248 undefined on input line 154. [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 249 undefined on input line 183. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 317 undefined on input line 478. 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[326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 328 undefined on input line 1172. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 328 undefined on input line 1186. Excluding 'htmlonly' comment. 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(./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 338 undefined on input line 17 41. ) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) LaTeX Warning: Reference `sec:doctest' on page 339 undefined on input line 55. 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A27779D788471CB66B7D26E11C71E228 489B2.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F40249D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479FEF9ECD8502EC2CF3722B913689E 0BC32.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F16D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C9D788471CB66B7D26E11C71E228 489B2.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE59D788471CB66B7D26E11C71E228 489B2.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B716929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB009D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E599D788471CB66B7D26E11C71E228 489B2.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A92539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D69D788471CB66B7D26E11C71E228 489B2.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D439D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD169D788471CB66B7D26E11C71E228 489B2.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E8939D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C630649D788471CB66B7D26E11C71E228 489B2.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A4429D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F9863689D788471CB66B7D26E11C71E228 489B2.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B0459D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA29D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). 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The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC9D788471CB66B7D26E11C71E228 489B2.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B519559D788471CB66B7D26E11C71E228 489B2.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D079D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE3279D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A039D788471CB66B7D26E11C71E228 489B2.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F79D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC269D788471CB66B7D26E11C71E228 489B2.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A4569D788471CB66B7D26E11C71E228 489B2.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C9D788471CB66B7D26E11C71E228 489B2.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B737809D788471CB66B7D26E11C71E228 489B2.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE5735779D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA49D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A9D788471CB66B7D26E11C71E228 489B2.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD8804449D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C7879D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C49D788471CB66B7D26E11C71E228 489B2.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E98689D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C99339D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C1769D788471CB66B7D26E11C71E228 489B2.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA9D788471CB66B7D26E11C71E228 489B2.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B99D788471CB66B7D26E11C71E228 489B2.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF27919D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D29D788471CB66B7D26E11C71E228 489B2.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D019D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE6017358279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A2500D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C09D788471CB66B7D26E11C71E228 489B2.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB349D788471CB66B7D26E11C71E228 489B2.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E9D788471CB66B7D26E11C71E228 489B2.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF926269D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED18D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7ACD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F728414977D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAFD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E816656D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A1D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20ADD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B024803195D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC73D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF9D788471CB66B7D26E11C71E228 489B2.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB530065D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A40D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D043D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C9739D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C07179D788471CB66B7D26E11C71E228 489B2.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C379D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B494079159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. 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Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. 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Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FBEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB28EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B8D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B383D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D9D788471CB66B7D26E11C71E228 489B2.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{36}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD9D788471CB66B7D26E11C71E228 489B2.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A27779D788471CB66B7D26E11C71E228 489B2.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F40249D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479FEF9ECD8502EC2CF3722B913689E 0BC32.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F16D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C9D788471CB66B7D26E11C71E228 489B2.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE59D788471CB66B7D26E11C71E228 489B2.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B716929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB009D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E599D788471CB66B7D26E11C71E228 489B2.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A92539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D69D788471CB66B7D26E11C71E228 489B2.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D439D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD169D788471CB66B7D26E11C71E228 489B2.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E8939D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C630649D788471CB66B7D26E11C71E228 489B2.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A4429D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F9863689D788471CB66B7D26E11C71E228 489B2.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B0459D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA29D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). 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The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC9D788471CB66B7D26E11C71E228 489B2.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B519559D788471CB66B7D26E11C71E228 489B2.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D079D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE3279D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A039D788471CB66B7D26E11C71E228 489B2.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F79D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC269D788471CB66B7D26E11C71E228 489B2.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A4569D788471CB66B7D26E11C71E228 489B2.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C9D788471CB66B7D26E11C71E228 489B2.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B737809D788471CB66B7D26E11C71E228 489B2.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE5735779D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA49D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A9D788471CB66B7D26E11C71E228 489B2.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD8804449D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C7879D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C49D788471CB66B7D26E11C71E228 489B2.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E98689D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C99339D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C1769D788471CB66B7D26E11C71E228 489B2.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA9D788471CB66B7D26E11C71E228 489B2.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B99D788471CB66B7D26E11C71E228 489B2.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF27919D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D29D788471CB66B7D26E11C71E228 489B2.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D019D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE6017358279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A2500D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C09D788471CB66B7D26E11C71E228 489B2.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB349D788471CB66B7D26E11C71E228 489B2.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E9D788471CB66B7D26E11C71E228 489B2.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF926269D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED18D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7ACD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F728414977D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAFD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E816656D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A1D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20ADD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B024803195D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC73D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF9D788471CB66B7D26E11C71E228 489B2.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB530065D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A40D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D043D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C9739D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C07179D788471CB66B7D26E11C71E228 489B2.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C379D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B494079159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCCEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB9D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA29D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B8297711D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B0345641CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC4341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8BD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D00EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8DEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F04725EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A3798D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC579D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FBEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB28EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B8D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B383D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D9D788471CB66B7D26E11C71E228 489B2.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. [357] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B94494492541CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A3641CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) [358]) [359] (./Tutorial/chapter_appendix.tex Chapter 24. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. 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[9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. 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(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165365 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165365 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/Doc' make[1]: Leaving directory '/<>' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.10 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:237: set -e; \ mkdir -p /<>/.pybuild/cpython3_3.10/build/home; \ mkdir -p /<>/.pybuild/cpython3_3.10/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/Tutorial /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/examples /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Tests /<>/.pybuild/cpython3_3.10/build; \ cd /<>/.pybuild/cpython3_3.10/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/.pybuild/cpython3_3.10/build/home python3.10 run_tests.py --offline /<>/.pybuild/cpython3_3.10/build/Tests/run_tests.py:33: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives import distutils.util test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Error in setFont('Times-Roman',10) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypeptide ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:548: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2008: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2954: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite ... ok test_psw ... ok test_raxml_tool ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 513 tests in 244.872 seconds Skipping any tests requiring internet access Python version: 3.10.4 (main, Mar 24 2022, 13:15:43) [GCC 11.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-L1u_EEcU mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -d /<>/python-biopython-1.79\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.10 --dest-dir /<>/python-biopython-1.79\+dfsg/debian/tmp I: pybuild base:237: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.10 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application copying /<>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Application/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/Primer3.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/Applications.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Applications.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Primer3.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/PrimerSearch.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline copying /<>/.pybuild/cpython3_3.10/build/Bio/Medline/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Medline/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/pm_fitting.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/phen_micro.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/phen_micro.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/pm_fitting.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/EasyController.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/FileParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/Controller.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/Trainer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/Utilities.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Trainer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Utilities.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/DynamicProgramming.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/lcc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CheckSum.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParamData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParam.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/MeltingTemp.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/lcc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsage.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/REST.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/REST.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.10/build/Bio/File.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MafIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MsfIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/StockholmIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MsfIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MauveIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MafIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/NexusIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MauveIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/chisq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonseq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonseq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonalignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/chisq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Nodes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Trees.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/StandardData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/StandardData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nexus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Trees.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nodes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Nexus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/ScanProsite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prodoc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Enzyme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Enzyme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prosite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prodoc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prosite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2module.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS copying /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/xms.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/matrix.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/meme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/transfac.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/_xxmotif.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/minimal.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/db.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/db.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/alignace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/thresholds.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/pfm.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/mast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/thresholds.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/xms.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/minimal.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/clusterbuster.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/transfac.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/meme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/pfm.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/alignace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/mast.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/matrix.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/clusterbuster.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene copying /<>/.pybuild/cpython3_3.10/build/Bio/UniGene/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniGene/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/PrintFormat.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/PrintFormat.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/bgzf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/Graph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Scanner.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/KeyWList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/KeyWList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Mafft.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_MSAProbs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Clustalw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_TCoffee.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Dialign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Probcons.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Prank.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Prank.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Muscle.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RAO -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/STR -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JONES -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/FENG -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/AlignInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/xpktools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/NOEtools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/xpktools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/NOEtools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/BasicChromosome.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/Distribution.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/DisplayRepresentation.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/KGML_vis.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/Comparative.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Comparative.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/KGML_vis.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Distribution.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/IUPACData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/CodonTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/SCOPData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/CodonTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/SCOPData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/IUPACData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SnapGeneIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/AbiIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/GckIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/UniprotIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/XdnaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/AceIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PhdIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/IgIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PdbIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/TabIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/NibIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SeqXmlIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SwissIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PirIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/QualityIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/QualityIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SffIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AbiIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/IgIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PirIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AceIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SwissIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PdbIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/GckIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TabIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/NibIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PhdIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SffIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/CelFile.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/CelFile.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/MaxEntropy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/dnal.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/psw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/psw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/dnal.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/pairwise2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Ace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_samtools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_bwa.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Phd.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Phd.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Ace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.h -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/clustermodule.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/Parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/notat.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isopub.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/phrase.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isodia.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/para.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isotech.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/display.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/link.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/modules.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/chars.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isobox.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/list.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isonum.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/section.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/common.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/format.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/math.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/references.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/Parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS copying /<>/.pybuild/cpython3_3.10/build/Bio/CAPS/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/CAPS/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/HSExposure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/AbstractPropertyMap.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmcifio.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/StructureBuilder.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PSEA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Structure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Superimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBExceptions.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/mmtfio.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Selection.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ResidueDepth.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Dice.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Atom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/NeighborSearch.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Model.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Chain.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Residue.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ic_rebuild.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/SCADIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/NACCESS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/SASA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/vectors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PICIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ic_data.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/internal_coords.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ResidueDepth.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/mmcifio.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PSEA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PICIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Superimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/DSSP.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureAlignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIFParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Structure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NeighborSearch.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SASA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/FragmentMapper.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Atom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Polypeptide.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureBuilder.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Selection.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBExceptions.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Chain.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SCADIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_rebuild.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Model.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Entity.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/vectors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/internal_coords.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Residue.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/HSExposure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Dice.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_data.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NACCESS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Entity.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/FreqTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/MatrixInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/FreqTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIWWW.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/ParseBlastTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/Applications.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIWWW.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Applications.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass copying /<>/.pybuild/cpython3_3.10/build/Bio/Compass/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Compass/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/MaxEntropy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/Seq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/File.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqFeature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/bgzf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/pairwise2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/NaiveBayes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/kNN.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/LogisticRegression.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqRecord.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlatIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/BlatIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hsp.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/query.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hit.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hit.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/query.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/GOA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/GOA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Newick.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Consensus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_cdao_owl.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NewickIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Phyml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Raxml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAOIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_io.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXMLIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/chi2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_paml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXMLIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/BaseTree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Consensus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/BaseTree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NewickIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_io.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAOIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NexusIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Newick.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/kNN.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Dom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Residues.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Hie.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Des.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Raf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Cla.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Cla.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Des.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Hie.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Raf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Dom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Residues.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.10/build/Tests/CDAO/test.cdao -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Mafft_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Insdc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBI_BLAST_tools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_forward.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/needle_asis.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/alignret.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/needle.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_simple.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/no_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/water2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK_full.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.psearch -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/short.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/water.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/internal_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_pair.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_reverse.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.10/build/Tests/FSSP/1cnv.fssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result3.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/upgma.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj_min.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/trees.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/pars3.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/test.log -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/strict_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/adam_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/msa.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/majority_ref.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez_parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Blast_Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Superimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBI_qblast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Clustalw_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsaZtkwaz creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate_2.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/BadPlate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate_2.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Dom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_001.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_35_002.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_001.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_004.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_002.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_005.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_005.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_003.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_002.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/mirna.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_004.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_003.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_002.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_001.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c2line.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo2.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c2space.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c3line.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/big.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo3.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c3space.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/bug2453.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/cnksr3.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/unfinished.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_test.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/corrupt.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/humor.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/bundle_without_target.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/wrong_version.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/invalid.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/length_coords_mismatch.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Compass.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phd.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/requires_wise.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise2_no_C.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.10/build/Tests/Gck/artificial.gck -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GenomeDiagram.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_legacy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/output.best.fas -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_RCSBFormats.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_SASA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise_alignment_map.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Ace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00010.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map03070.png -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko03070.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.new -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map01100.png -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.irregular -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map00950.rea -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko01100.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.irregular -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.4letter -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/gene.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00253.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsDistribution.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Gck.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_prosite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_seq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsaCM44N6 copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_internal_coords.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Seq_objs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Probcons_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_PdbIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/Stockholm/simple.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/Stockholm/funny.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-e.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-d.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.10/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_nucl.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl4.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro4.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro2.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl2.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_pro.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl5.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl3.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro1.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/drosophilla.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/adh.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro3.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro5.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl1.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/codonposset.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/bats.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/test.new -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/int_node_labels.nwk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/test_Nexus_input.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_types.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/sets.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/treebase-record.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/taxa.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/trees-uris.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/trees.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/edgelabels.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/nexml.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/tolweb.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_taxa.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/phenoscape.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/characters.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/timetree.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Scop.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/biosql.ini.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_nographics.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Fasttree_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Astral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_UniGene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Application.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_EmbossPrimer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_align_substitution_matrices.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple_short.xmfa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_QualityIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/requires_internet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Cla.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/out.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/fourrows.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/fourcolumns.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/alignace.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/MA0056.1.transfac -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/minimal_test.meme -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/SRF.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/REB1.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/transfac.dat -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/Arnt.sites -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/abdb.xms -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/test_CodonTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/repeat.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/enolase.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ClustalOmega_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ExPASy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta9.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta2.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Affy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Residues.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00488.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00159.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00432.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00546.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00165.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00107.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Mdm_partial.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Hs.2.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Eca.1.2425.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/test_HMMGeneral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Nexus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_psw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_prodoc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_NACCESS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Chi2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Raf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_File.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/protein.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/promals3d.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/cw02.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/odd_consensus.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/temp horses.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/hedgehog.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise_aligner.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_QCPSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NMR.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_NibIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SffIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/arab1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_version.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/1MRR_A.gp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/one_of.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NT_019265.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.ffn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/blank_seq.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/negative_location.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/DS830848.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/extra_keywords.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/noref.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/gbvrl1_start.seq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/iro.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/tsa_acropora.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/origin_line.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/pri1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq2.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/GU949562.1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/no_end_marker.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/no_origin_no_end.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.tsv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/dbsource_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_product.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_accession.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/pBAD30.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_codonalign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsChromosome.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/biosql.ini.appveyor -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KEGG_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Wise.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-a.xdna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-b.xdna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-c.xprt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TogoWS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BWA_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Dice.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.gff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0A186.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp008 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P84001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp016 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P97881.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp005 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P60137.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp006 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp010 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.rdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0CK95.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp012 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.list -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp009 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp011 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/O23729.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp013 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/R5HY77.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp015 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp007 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Consensus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/cow.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/cow.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/pig.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/hg38.chrom.sizes -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/pig.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Muscle_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/search_tests_common.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.10/build/Tests/NMR/noed.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.10/build/Tests/NMR/out_example.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.10/build/Tests/common_BioSQL.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_MafIO_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/multi_bar.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_widths.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_original.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/random_organism.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_7.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/square_test.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_original.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_1.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/spiral_test.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.eps -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/simple_bar.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_colors.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/test_bgzf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/paired.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/greek.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_geo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/pairwise2_testCases.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SwissProt.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/.coveragerc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_features.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_motifs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_raxml_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_DSSP.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/global_species_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/dna_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/protein_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/rna_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phenotype.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/fake.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/empty.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/3100.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/no_smpl1.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/test.fsa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/310.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/test_data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/3730.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v3_example.CEL -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v4_example.CEL -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/test_CAPS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output016.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output004.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/sweetpea.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output006.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output013.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output011.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output002.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/aster_no_wrap.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output009.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output015.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/loveliesbleeding.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/lavender.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/dups.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output014.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/rose.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/elderberry.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/centaurea.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/aster.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/rosemary.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/wisteria.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output012.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output010.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output005.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/flowers.pro.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output003.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/phlox.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output001.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/lupine.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output007.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/fa01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output008.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/tc_out.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PQR.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phyml_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/Human_contigs.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/embl_with_0_line.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/RepBase23.02.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/U87107.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/AAA03323.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited2.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/location_wrap.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/xx_after_co.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DS830848.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/patents.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/TRBG361.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/A04195.imgt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/101ma_no_coords.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/SC10H5.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/epo_prt_selection.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/AE017046.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/seq_tests_common.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Hie.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SeqXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_kNN.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_vectors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Prank_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Medline.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_networkx.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_convert.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_translate.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Tutorial.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KeyWList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_matplotlib.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.long.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SVDSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_long_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_example.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_escape.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_spaces.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_93.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_diff_ids.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_del.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_no_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_tab.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/tricky.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_space.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_tabs.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_null.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/zero_length.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_short_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_vtab.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Cluster.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_KDTree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.10/build/Tests/Saf/saf1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.10/build/Tests/ExtendedPhylip/primates.phyx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Exposure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsBitmaps.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.10/build/Tests/Cluster/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.10/build/Tests/Cluster/cyano.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.10/build/Tests/test_samtools_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Enzyme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_write.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Xdna.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsGeneral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Disordered.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Emboss.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/common_BioSQL_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_MauveIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Pathway.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Dialign_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/espell.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/ncbi_mim.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/biosample.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/taxonomy.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/efetch_schemas.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/protein.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary9.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/journals.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed3.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/hennigian.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/random.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM645.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_platform.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM804.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM691.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_dual.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_series.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSE16.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_family.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM700.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/cor6_6.db -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqUtils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_NeXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/msf/DOA_prot.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/msf/W_prot.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/test_UniProt_GOA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_model.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_CDAO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/longnames.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/alignment.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/bad.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/species.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/bad_results.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/gen_results.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/species.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/Cw_prot.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/B_nuc.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/clustalw.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/DMA_nuc.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/DMB_prot.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_AbiIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/apaf.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/made_up.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/distribution.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/bcl_2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A7G.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/header.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1MOM_min.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.rsa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.asa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/ions.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2OFG.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.xyzr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Sander_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/3JQH.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/alignment_file.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2n0n_M1.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/disordered.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG_noheader.dssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.dssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4Q9R_min.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Miller_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/occupancy.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1AS5.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/d256ba_.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Wilke_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/lib_10_z_5.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Uniprot.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_freq.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/aaDistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_count.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_orchid.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_result.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_actin.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_disco.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_empty.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_pcr.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_wait.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.tab -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/test_HMMCasino.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/run_tests.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Restriction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/seqs.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/EDD_RAT.dat -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/bt001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/readme.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/sam2.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_refresh.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/sam1.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1_sorted.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2_sorted.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.10/build/Tests/Compass/comtest1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.10/build/Tests/Compass/comtest2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GenBank.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/output.best.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_EMBL_unittest.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/multi.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001422.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802lc.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802x.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phenotype_fit.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phd.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PhyloXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Affy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_networkx.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_internet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Raf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EmbossPrimer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_KDTree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_model.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_vectors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Restriction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsGeneral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Seq_objs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Muscle_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Application.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Consensus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TreeConstruction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prodoc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBITextParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_samtools_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_RCSBFormats.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniProt_GOA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_translate.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Clustalw_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CodonTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Fasttree_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_nographics.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_raxml_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_geo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_DSSP.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ExPASy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KeyWList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ColorSpiral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Dice.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBIXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMGeneral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Compass.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Emboss.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PQR.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MafIO_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsChromosome.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phyml_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_write.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_LogisticRegression.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_aligner.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsDistribution.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_seq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Tutorial.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqFeature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SwissProt.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMCasino.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Scop.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Superimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Residues.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Exposure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BWA_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/pairwise2_testCases.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Disordered.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_NACCESS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Probcons_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_bgzf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_CDAO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Wise.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenomeDiagram.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_cellosaurus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Astral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SASA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EMBL_unittest.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Mafft_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_NeXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CAPS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SVDSuperimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/seq_tests_common.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype_fit.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Hie.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Gck.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Des.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Dom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_write.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqRecord.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TogoWS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_wise.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ProtParam.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_qblast.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Cluster.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_features.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TCoffee_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Blast_Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SubsMat.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_QCPSuperimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Prank_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniGene.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_psw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Uniprot.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_codonalign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prosite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Enzyme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2_no_C.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Nexus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Dialign_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_kNN.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SMCRA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_File.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_internal_coords.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Medline.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenBank.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Pathway.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_legacy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SffIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/search_tests_common.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqUtils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Ace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NaiveBayes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDBList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Cla.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Chi2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align_substitution_matrices.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NMR.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_convert.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.10/build/Tests/InterProScan/test_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.10/build/Tests/test_motifs_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_align.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Des.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/seq.cap.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/consed_sample.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/contig1.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_SMCRA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KEGG.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBITextParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDBList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_human_sample.gpi -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gaf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SubsMat.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/allx.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ProtParam.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.10/build/Tests/PQR/1A80.pqr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd_solexa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd_454 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SnapGene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/lactate.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/proline.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/lipoprotein.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/valine.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/raftest.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/testDom.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_write.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/DBUtils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/Loader.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/BioSeq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/BioSeqDatabase.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/DBUtils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeqDatabase.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/Loader.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ec_5.4.2.2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/my_blast.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/beta.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/m_cold.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/PF05371_seed.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/getgene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/fasta_dictionary.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/my_blat.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/alpha.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/simple.dnd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/nmr/noed.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/nmr/simplepredict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/clustal_run.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ACT_example.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/fasta_iterator.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/Plates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/swissprot.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/www_blast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.dnd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.config creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.config/matplotlib creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/mcoffee creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins/linux creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/methods creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/cache creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib copying /<>/.pybuild/cpython3_3.10/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/REST.py to REST.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/File.py to File.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/xms.py to xms.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/matrix.py to matrix.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/meme.py to meme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/transfac.py to transfac.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/minimal.py to minimal.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/alignace.py to alignace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/pfm.py to pfm.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/mast.py to mast.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/bgzf.py to bgzf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/utils.py to utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Seq.py to Seq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/dnal.py to dnal.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/psw.py to psw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/pairwise2.py to pairwise2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Structure.py to Structure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Selection.py to Selection.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Dice.py to Dice.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Atom.py to Atom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Model.py to Model.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Chain.py to Chain.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Residue.py to Residue.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SASA.py to SASA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/vectors.py to vectors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Entity.py to Entity.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_io.py to _io.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/kNN.py to kNN.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Des.py to Des.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Compass.py to test_Compass.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phd.py to test_Phd.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_wise.py to requires_wise.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Ace.py to test_Ace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prosite.py to test_prosite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_seq.py to test_seq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Application.py to test_Application.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_internet.py to requires_internet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Affy.py to test_Affy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_psw.py to test_psw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_File.py to test_File.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NMR.py to test_NMR.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Wise.py to test_Wise.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_geo.py to test_geo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs.py to test_motifs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_raxml_tool.py to test_raxml_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PQR.py to test_PQR.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_kNN.py to test_kNN.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Medline.py to test_Medline.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_translate.py to test_translate.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/run_tests.py to run_tests.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align.py to test_align.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/Loader.py to Loader.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/getgene.py to getgene.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-310.pyc running install_egg_info Copying biopython.egg-info to /<>/debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.20.0), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>' dh_install -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.10/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.10/dist-packages/Bio debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.10/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/python3-biopython-sql//usr/lib/python3.10/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.10/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.10/dist-packages/ install -d debian/.debhelper/generated/python3-biopython-sql rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/<>' dh_installdocs -i dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc. If the default is wrong, please use --doc-main-package install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/python-biopython-doc/usr/share/doc/python-biopython-doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/python-biopython-doc.biopython-tutorial install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /<>/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/<>/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' grep: ../Bio/__init__.py: No such file or directory File "", line 1 ; print('dev' if 'dev' in __version__ else __version__) ^ SyntaxError: invalid syntax ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/<>/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython3-biopython-sql install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 5.20220215 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.10 (default=3.10) D: dh_python3 debhelper:141: skipping package: python-biopython-doc D: dh_python3 debhelper:169: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:52: moving files from debian/python3-biopython/usr/lib/python3.10/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.79.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:172: trying to find dependency for numpy (python=None) D: dh_python3 depends:281: D={'python3 (<< 3.11)', 'python3 (>= 3.10~)', 'python3:any', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package python3-biopython-sql... D: dh_python3 fs:52: moving files from debian/python3-biopython-sql/usr/lib/python3.10/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython-sql D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/w3c-sgml-lib/schema/dtd/XX-MathML2-20031104/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1646490972 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing 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debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_white.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-biopython cd debian/python-biopython-doc cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian cd '/<>' cd '/<>' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex 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usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NMR.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Disordered.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypeptide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SASA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_TwoBitIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_alignment_map.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/<>' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 17f658715f91833565369c2760de2b33889a5747 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/f658715f91833565369c2760de2b33889a5747.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/f658715f91833565369c2760de2b33889a5747.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripRbBXsc debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripRbBXsc cat '/tmp/_kMywxpAHN/stripRbBXsc' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripRbBXsc debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/17/f658715f91833565369c2760de2b33889a5747.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyILKglG chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyILKglG cat '/tmp/_kMywxpAHN/objcopyILKglG' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyILKglG debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a4f4ba0f821e494debe7f413bb901a43345b184f install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/f4ba0f821e494debe7f413bb901a43345b184f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/f4ba0f821e494debe7f413bb901a43345b184f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripZUqQwx debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripZUqQwx cat '/tmp/_kMywxpAHN/stripZUqQwx' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripZUqQwx debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/f4ba0f821e494debe7f413bb901a43345b184f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyoIPFJP chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyoIPFJP cat '/tmp/_kMywxpAHN/objcopyoIPFJP' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyoIPFJP debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 836b452d5515b31e749505020604a9e457251c47 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/6b452d5515b31e749505020604a9e457251c47.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/6b452d5515b31e749505020604a9e457251c47.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/striplkdmDj debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/striplkdmDj cat '/tmp/_kMywxpAHN/striplkdmDj' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/striplkdmDj debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/83/6b452d5515b31e749505020604a9e457251c47.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopynKdbLT chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopynKdbLT cat '/tmp/_kMywxpAHN/objcopynKdbLT' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopynKdbLT debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 847513d60535d4f4a4cae01e29074f672395c3b4 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/7513d60535d4f4a4cae01e29074f672395c3b4.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/7513d60535d4f4a4cae01e29074f672395c3b4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripw6FFZh debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripw6FFZh cat '/tmp/_kMywxpAHN/stripw6FFZh' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripw6FFZh debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/7513d60535d4f4a4cae01e29074f672395c3b4.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyKq6sof chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyKq6sof cat '/tmp/_kMywxpAHN/objcopyKq6sof' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyKq6sof debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 56298c25b3ed1031f0a5822fe68060df37a91c30 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/298c25b3ed1031f0a5822fe68060df37a91c30.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/298c25b3ed1031f0a5822fe68060df37a91c30.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripmfXrEO debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripmfXrEO cat '/tmp/_kMywxpAHN/stripmfXrEO' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripmfXrEO debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/298c25b3ed1031f0a5822fe68060df37a91c30.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyV_qu2C chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyV_qu2C cat '/tmp/_kMywxpAHN/objcopyV_qu2C' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyV_qu2C debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a4aeee606532f4a17a94469226e2fe3c610203ff objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/aeee606532f4a17a94469226e2fe3c610203ff.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/aeee606532f4a17a94469226e2fe3c610203ff.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripqMa3Mv debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripqMa3Mv cat '/tmp/_kMywxpAHN/stripqMa3Mv' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripqMa3Mv debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/aeee606532f4a17a94469226e2fe3c610203ff.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopy0_sJK3 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopy0_sJK3 cat '/tmp/_kMywxpAHN/objcopy0_sJK3' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopy0_sJK3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0226a45514f897a728cec4071a631ca4701d7cc4 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/02/26a45514f897a728cec4071a631ca4701d7cc4.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/02/26a45514f897a728cec4071a631ca4701d7cc4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripDakXho debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripDakXho cat '/tmp/_kMywxpAHN/stripDakXho' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripDakXho debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/02/26a45514f897a728cec4071a631ca4701d7cc4.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyLWD8Rx chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyLWD8Rx cat '/tmp/_kMywxpAHN/objcopyLWD8Rx' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyLWD8Rx debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2491719d0052c774157e563679e94bc62bc88653 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/91719d0052c774157e563679e94bc62bc88653.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/91719d0052c774157e563679e94bc62bc88653.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/_kMywxpAHN/stripoyCrNp debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/stripoyCrNp cat '/tmp/_kMywxpAHN/stripoyCrNp' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/stripoyCrNp debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/91719d0052c774157e563679e94bc62bc88653.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyT2EoBP chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so /tmp/_kMywxpAHN/objcopyT2EoBP cat '/tmp/_kMywxpAHN/objcopyT2EoBP' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so' chmod --reference /tmp/_kMywxpAHN/objcopyT2EoBP debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm install -d debian/python-biopython-doc/DEBIAN install -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=0226a45514f897a728cec4071a631ca4701d7cc4 17f658715f91833565369c2760de2b33889a5747 2491719d0052c774157e563679e94bc62bc88653 56298c25b3ed1031f0a5822fe68060df37a91c30 836b452d5515b31e749505020604a9e457251c47 847513d60535d4f4a4cae01e29074f672395c3b4 a4aeee606532f4a17a94469226e2fe3c610203ff a4f4ba0f821e494debe7f413bb901a43345b184f" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython chmod 0644 -- debian/python-biopython-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. install -d debian/.debhelper/scratch-space/build-python3-biopython dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-biopython-sql (in debian/python3-biopython-sql); do_strip: , oemstrip: pkgstriptranslations: processing python-biopython-doc (in debian/python-biopython-doc); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-biopython-sql/DEBIAN/control, package python3-biopython-sql, directory debian/python3-biopython-sql INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Truncating usr/share/doc/python3-biopython/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79+dfsg-3_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.79+dfsg-3_amd64.deb'. Renaming python3-biopython-dbgsym_1.79+dfsg-3_amd64.deb to python3-biopython-dbgsym_1.79+dfsg-3_amd64.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79\+dfsg-3_amd64.deb ../python3-biopython-dbgsym_1.79\+dfsg-3_amd64.ddeb INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-biopython-doc/DEBIAN/control, package python-biopython-doc, directory debian/python-biopython-doc INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgstripfiles: Truncating usr/share/doc/python-biopython-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package python-biopython-doc (to save build time) dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.79+dfsg-3_all.deb'. Searching for duplicated docs in dependency python3-biopython... symlinking changelog.Debian.gz in python3-biopython-sql to file in python3-biopython pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython-sql ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.79+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biopython_1.79+dfsg-3_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../python-biopython_1.79+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-03-28T09:27:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.79+dfsg-3_amd64.changes: ------------------------------------------- Format: 1.8 Date: Sat, 05 Mar 2022 15:36:12 +0100 Source: python-biopython Binary: python-biopython-doc python3-biopython python3-biopython-sql Built-For-Profiles: noudeb Architecture: all amd64 Version: 1.79+dfsg-3 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Étienne Mollier Description: python-biopython-doc - Documentation for the Biopython library python3-biopython - Python3 library for bioinformatics python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Closes: 1006667 Changes: python-biopython (1.79+dfsg-3) unstable; urgency=medium . [ Peter Michael Green ] * Restrict architecture list of muscle build-dependency to reflect architectures where the current version of muscle is available. (Closes: #1006667) . [ Étienne Mollier ] * d/control,d/python3-biopython.links: move from w3-dtd-mathml to slightly more recent w3c-sgml-lib. Thanks to Peter Green and Vincent Lefevre. * Remove d/python3-biopython.lintian-overrides; not in use anymore. 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Binary: python-biopython-doc python3-biopython python3-biopython-dbgsym python3-biopython-sql Architecture: all amd64 Version: 1.79+dfsg-3 Checksums-Md5: 05d082ba6b4d52a6955e5a32a02a33be 15079692 python-biopython-doc_1.79+dfsg-3_all.deb dadaebb74d53ff37a54a1093ccd08ddf 287772 python3-biopython-dbgsym_1.79+dfsg-3_amd64.ddeb 05328a97f4737650302a3fbe88d876bf 25342 python3-biopython-sql_1.79+dfsg-3_all.deb ae6f937fcd6295a181e897930ce7e054 1468798 python3-biopython_1.79+dfsg-3_amd64.deb Checksums-Sha1: ed7b77ddd7a11bdd726049d0fc243b7e62e0bad5 15079692 python-biopython-doc_1.79+dfsg-3_all.deb e489e9fe23736f750456c3857e785c0a35aa4845 287772 python3-biopython-dbgsym_1.79+dfsg-3_amd64.ddeb c6d8c325c45124649d6cc0ce4c296b78401f91bc 25342 python3-biopython-sql_1.79+dfsg-3_all.deb 54b5cc2fb13dccd2a818300e3776b57004537dd1 1468798 python3-biopython_1.79+dfsg-3_amd64.deb Checksums-Sha256: d8ff9475130109ec36c8bf6ccec21c1ef3d4a16e3144c6d108d2eb936c7ae61b 15079692 python-biopython-doc_1.79+dfsg-3_all.deb 15388fb9044abfd3a45ecb40d6c203ce8c8b1fad9371648af00b437ef7ca169b 287772 python3-biopython-dbgsym_1.79+dfsg-3_amd64.ddeb d2ee6ef6f3218c6be49eebafc049c9213eb1a36a2caf9ed83732d05247e4c2a1 25342 python3-biopython-sql_1.79+dfsg-3_all.deb 6f0339745636ab968516bdeac8dcc7e8fe9869fe1e1c00ae16773486002102ab 1468798 python3-biopython_1.79+dfsg-3_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 28 Mar 2022 09:27:11 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-4ubuntu4), autotools-dev (= 20220109.1), base-files (= 12ubuntu3), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38-3ubuntu1), binutils-common (= 2.38-3ubuntu1), binutils-x86-64-linux-gnu (= 2.38-3ubuntu1), blt (= 2.5.3+dfsg-4.1build2), bsdextrautils (= 2.37.2-4ubuntu3), bsdutils (= 1:2.37.2-4ubuntu3), build-essential (= 12.9ubuntu3), bwa (= 0.7.17-6), bzip2 (= 1.0.8-5build1), clustalo (= 1.2.4-7), clustalw (= 2.1+lgpl-7), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-19ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.6ubuntu1), debianutils (= 5.5-1ubuntu2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-python (= 5.20220215), dh-strip-nondeterminism (= 1.13.0-1), dialign (= 2.2.1-11), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dssp (= 4.0.4-1), dwz (= 0.14-1build2), emboss (= 6.6.0+dfsg-11ubuntu1), emboss-data (= 6.6.0+dfsg-11ubuntu1), emboss-lib (= 6.6.0+dfsg-11ubuntu1), fasttree (= 2.1.11-2), file (= 1:5.41-3), findutils (= 4.8.0-1ubuntu3), flex (= 2.6.4-8build2), fontconfig-config (= 2.13.1-4.2ubuntu5), fonts-dejavu-core (= 2.37-2build1), fonts-lmodern (= 2.004.5-6.1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-19ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-19ubuntu1), gcc-11-base (= 11.2.0-19ubuntu1), gcc-12-base (= 12-20220319-1ubuntu1), gettext (= 0.21-4ubuntu4), gettext-base (= 0.21-4ubuntu4), ghostscript (= 9.55.0~dfsg1-0ubuntu5), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu3), hevea (= 2.35-1build1), hostname (= 3.23ubuntu2), ibverbs-providers (= 39.0-1), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1.1), libasan6 (= 11.2.0-19ubuntu1), libatomic1 (= 12-20220319-1ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libavahi-client3 (= 0.8-5ubuntu5), libavahi-common-data (= 0.8-5ubuntu5), libavahi-common3 (= 0.8-5ubuntu5), libbinutils (= 2.38-3ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu3), libboost-iostreams1.74.0 (= 1.74.0-14ubuntu3), libboost-program-options1.74.0 (= 1.74.0-14ubuntu3), libboost-regex1.74.0 (= 1.74.0-14ubuntu3), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.5-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build3), libcbor0.8 (= 0.8.0-2ubuntu1), libcc1-0 (= 12-20220319-1ubuntu1), libcifpp-data (= 2.0.5-1build1), libcifpp2 (= 2.0.5-1build1), libcom-err2 (= 1.46.5-2ubuntu1), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-3ubuntu1), libctf0 (= 2.38-3ubuntu1), libcups2 (= 2.4.1op1-1ubuntu4), libcurl3-gnutls (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu3), libdbus-1-3 (= 1.12.20-2ubuntu3), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.6ubuntu1), libdeflate0 (= 1.10-2), libdpkg-perl (= 1.21.1ubuntu1), libdw1 (= 0.186-1build1), libedit2 (= 3.1-20210910-1build1), libelf1 (= 0.186-1build1), libevent-core-2.1-7 (= 2.1.12-stable-1build3), libevent-pthreads-2.1-7 (= 2.1.12-stable-1build3), libexpat1 (= 2.4.7-1), libexpat1-dev (= 2.4.7-1), libfabric1 (= 1.11.0-3), libffi8 (= 3.4.2-4), libfido2-1 (= 1.10.0-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-4.2ubuntu5), libfreetype6 (= 2.11.1+dfsg-1build1), libfribidi0 (= 1.0.8-2ubuntu3), libgcc-11-dev (= 11.2.0-19ubuntu1), libgcc-s1 (= 12-20220319-1ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu3), libgd3 (= 2.3.0-2ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12-20220319-1ubuntu1), libglib2.0-0 (= 2.72.0-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.3-4ubuntu1), libgomp1 (= 12-20220319-1ubuntu1), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1build2), libgs9 (= 9.55.0~dfsg1-0ubuntu5), libgs9-common (= 9.55.0~dfsg1-0ubuntu5), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz0b (= 2.7.4-1ubuntu3), libhogweed6 (= 3.7.3-1build2), libhpdf-2.3.0 (= 2.3.0+dfsg-1build1), libhts3 (= 1.13+ds-2build1), libhtscodecs2 (= 1.1.1-3), libhwloc-plugins (= 2.7.0-2), libhwloc15 (= 2.7.0-2), libibverbs1 (= 39.0-1), libice6 (= 2:1.0.10-1build2), libicu70 (= 70.1-2), libidn12 (= 1.38-4build1), libidn2-0 (= 2.3.2-2build1), libijs-0.35 (= 0.35-15build2), libimagequant0 (= 2.17.0-1), libisl23 (= 0.24-2build1), libitm1 (= 12-20220319-1ubuntu1), libjbig0 (= 2.1-3.1build3), libjbig2dec0 (= 0.19-3build2), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu9), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-ui (= 1.13.1+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.13.2~dfsg-2), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkpathsea6 (= 2021.20210626.59705-1build1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build2), libldap-2.5-0 (= 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bytes, 2528 lines md5sums Package: python-biopython-doc Source: python-biopython Version: 1.79+dfsg-3 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 20207 Recommends: python3-biopython (= 1.79+dfsg-3) Section: doc Priority: optional Multi-Arch: foreign Homepage: https://biopython.org Description: Documentation for the Biopython library Documentation and examples about how to use the Biopython library. . 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Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 331288 Build-Time: 400 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 57 Job: python-biopython_1.79+dfsg-3.dsc Machine Architecture: amd64 Package: python-biopython Package-Time: 459 Source-Version: 1.79+dfsg-3 Space: 331288 Status: successful Version: 1.79+dfsg-3 -------------------------------------------------------------------------------- Finished at 2022-03-28T09:27:12Z Build needed 00:07:39, 331288k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-23506605 Scanning for processes to kill in build PACKAGEBUILD-23506605