https://launchpad.net/ubuntu/+source/python-biopython/1.79+dfsg-2build1/+build/23249325 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-022 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:02:23 UTC 2022 ppc64le Buildd toolchain package versions: launchpad-buildd_209~536~ubuntu20.04.1 python3-lpbuildd_209~536~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 17 Mar 08:56:53 ntpdate[1897]: adjust time server 10.211.37.1 offset -0.001984 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-23249325 --image-type chroot /home/buildd/filecache-default/104362a8a1d4d9793492e39ad0c0e733056a927b Creating target for build PACKAGEBUILD-23249325 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-23249325 Starting target for build PACKAGEBUILD-23249325 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-23249325 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23249325 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-23249325 Updating target for build PACKAGEBUILD-23249325 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el Packages [1360 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe ppc64el Packages [13.7 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5644 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el Packages [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [24.2 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el Packages [345 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [143 kB] Fetched 22.4 MB in 6s (3961 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: gcc-12-base libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libprocps8 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata usrmerge util-linux zlib1g 136 upgraded, 6 newly installed, 1 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 277 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcrypt-dev ppc64el 1:4.4.27-1 [142 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main ppc64el libc6-dev ppc64el 2.35-0ubuntu3 [2055 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main ppc64el libc-dev-bin ppc64el 2.35-0ubuntu3 [21.3 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main ppc64el libaudit-common all 1:3.0.7-1 [4782 B] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcap-ng0 ppc64el 0.7.9-2.2build3 [12.4 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main ppc64el libaudit1 ppc64el 1:3.0.7-1 [51.1 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main ppc64el libc6 ppc64el 2.35-0ubuntu3 [3257 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main ppc64el libc-bin ppc64el 2.35-0ubuntu3 [761 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main ppc64el perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main ppc64el libperl5.34 ppc64el 5.34.0-3ubuntu1 [4904 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main ppc64el perl ppc64el 5.34.0-3ubuntu1 [232 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main ppc64el perl-base ppc64el 5.34.0-3ubuntu1 [1851 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main ppc64el bzip2 ppc64el 1.0.8-5 [37.4 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main ppc64el libbz2-1.0 ppc64el 1.0.8-5 [49.5 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm6 ppc64el 1.23-1 [41.6 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm-compat4 ppc64el 1.23-1 [6880 B] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2ubuntu8 [71.8 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main ppc64el debconf all 1.5.79ubuntu1 [126 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam0g ppc64el 1.4.0-11ubuntu1 [68.8 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcrypt1 ppc64el 1:4.4.27-1 [107 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el linux-libc-dev ppc64el 5.15.0-23.23 [1315 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-12-base ppc64el 12-20220313-1ubuntu1 [18.9 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-s1 ppc64el 12-20220313-1ubuntu1 [34.5 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main ppc64el base-files ppc64el 12ubuntu2 [63.4 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main ppc64el debianutils ppc64el 5.5-1ubuntu1 [107 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main ppc64el bash ppc64el 5.1-6ubuntu1 [932 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main ppc64el bsdutils ppc64el 1:2.37.2-4ubuntu3 [86.7 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main ppc64el coreutils ppc64el 8.32-4.1ubuntu1 [1581 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgpg-error0 ppc64el 1.43-3 [88.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcrypt20 ppc64el 1.9.4-3ubuntu2 [697 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++6 ppc64el 12-20220313-1ubuntu1 [802 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main ppc64el libssl3 ppc64el 3.0.1-0ubuntu1 [2136 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main ppc64el libargon2-1 ppc64el 0~20171227-0.3 [21.5 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main ppc64el libblkid1 ppc64el 2.37.2-4ubuntu3 [131 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpcre2-8-0 ppc64el 10.39-3 [249 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main ppc64el libselinux1 ppc64el 3.3-1build1 [94.4 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main ppc64el libudev1 ppc64el 249.11-0ubuntu1 [96.7 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.175-2.1ubuntu4 [180 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main ppc64el libuuid1 ppc64el 2.37.2-4ubuntu3 [28.1 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcryptsetup12 ppc64el 2:2.4.3-1ubuntu1 [306 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-3ubuntu1 [271 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main ppc64el libunistring2 ppc64el 1.0-1 [568 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main ppc64el libidn2-0 ppc64el 2.3.2-2 [70.4 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main ppc64el libffi8 ppc64el 3.4.2-4 [24.9 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main ppc64el libp11-kit0 ppc64el 0.24.0-6 [264 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtasn1-6 ppc64el 4.18.0-4 [55.8 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgnutls30 ppc64el 3.7.3-4ubuntu1 [1031 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main ppc64el systemd-sysv ppc64el 249.11-0ubuntu1 [10.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main ppc64el systemd-timesyncd ppc64el 249.11-0ubuntu1 [32.2 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main ppc64el libacl1 ppc64el 2.3.1-1 [20.9 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapparmor1 ppc64el 3.0.4-2ubuntu2 [44.8 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main ppc64el libip4tc2 ppc64el 1.8.7-1ubuntu4 [24.0 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-3 [364 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkmod2 ppc64el 29-1ubuntu1 [58.9 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmount1 ppc64el 2.37.2-4ubuntu3 [146 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main ppc64el libseccomp2 ppc64el 2.5.3-2ubuntu1 [59.8 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main ppc64el login ppc64el 1:4.8.1-2ubuntu2 [190 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main ppc64el util-linux ppc64el 2.37.2-4ubuntu3 [1132 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main ppc64el mount ppc64el 2.37.2-4ubuntu3 [121 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main ppc64el systemd ppc64el 249.11-0ubuntu1 [5181 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsystemd0 ppc64el 249.11-0ubuntu1 [397 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxxhash0 ppc64el 0.8.1-1 [33.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapt-pkg6.0 ppc64el 2.4.1 [1028 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main ppc64el dpkg ppc64el 1.21.1ubuntu1 [1312 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-3 [111 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main ppc64el grep ppc64el 3.7-1 [167 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncurses6 ppc64el 6.3-2 [145 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncursesw6 ppc64el 6.3-2 [182 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtinfo6 ppc64el 6.3-2 [127 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-bin ppc64el 6.3-2 [196 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main ppc64el sed ppc64el 4.8-1ubuntu1 [204 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main ppc64el init-system-helpers all 1.62 [38.5 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-base all 6.3-2 [20.1 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main ppc64el sysvinit-utils ppc64el 3.01-1ubuntu1 [22.0 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgv ppc64el 2.2.27-3ubuntu1 [176 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main ppc64el apt ppc64el 2.4.1 [1427 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsepol2 ppc64el 3.3-1 [370 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsemanage-common all 3.3-1build1 [10.0 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsemanage2 ppc64el 3.3-1build1 [113 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main ppc64el passwd ppc64el 1:4.8.1-2ubuntu2 [792 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-modules-bin ppc64el 1.4.0-11ubuntu1 [44.5 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-modules ppc64el 1.4.0-11ubuntu1 [325 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main ppc64el logsave ppc64el 1.46.5-2ubuntu1 [11.3 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main ppc64el libext2fs2 ppc64el 1.46.5-2ubuntu1 [252 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main ppc64el e2fsprogs ppc64el 1.46.5-2ubuntu1 [650 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main ppc64el init ppc64el 1.62 [5416 B] Get:87 http://ftpmaster.internal/ubuntu jammy/main ppc64el libattr1 ppc64el 1:2.5.1-1 [14.3 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcom-err2 ppc64el 1.46.5-2ubuntu1 [10.4 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdebconfclient0 ppc64el 0.261ubuntu1 [7068 B] Get:90 http://ftpmaster.internal/ubuntu jammy/main ppc64el libk5crypto3 ppc64el 1.19.2-2 [113 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkrb5support0 ppc64el 1.19.2-2 [37.3 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkrb5-3 ppc64el 1.19.2-2 [434 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgssapi-krb5-2 ppc64el 1.19.2-2 [184 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkeyutils1 ppc64el 1.6.1-2ubuntu3 [11.6 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-runtime all 1.4.0-11ubuntu1 [40.2 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsmartcols1 ppc64el 2.37.2-4ubuntu3 [62.4 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtsan0 ppc64el 11.2.0-18ubuntu1 [2281 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgomp1 ppc64el 12-20220313-1ubuntu1 [141 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main ppc64el libitm1 ppc64el 12-20220313-1ubuntu1 [33.0 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main ppc64el libatomic1 ppc64el 12-20220313-1ubuntu1 [10.6 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main ppc64el libasan6 ppc64el 11.2.0-18ubuntu1 [2304 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblsan0 ppc64el 12-20220313-1ubuntu1 [1091 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main ppc64el libubsan1 ppc64el 12-20220313-1ubuntu1 [1003 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main ppc64el libquadmath0 ppc64el 12-20220313-1ubuntu1 [156 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main ppc64el g++-11 ppc64el 11.2.0-18ubuntu1 [10.2 MB] Get:106 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11 ppc64el 11.2.0-18ubuntu1 [17.7 MB] Get:107 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++-11-dev ppc64el 11.2.0-18ubuntu1 [2184 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-11-dev ppc64el 11.2.0-18ubuntu1 [1484 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main ppc64el libisl23 ppc64el 0.24-2 [835 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmpc3 ppc64el 1.2.1-1 [52.9 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcc1-0 ppc64el 12-20220313-1ubuntu1 [49.7 kB] Get:112 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libctf0 ppc64el 2.38-3ubuntu1 [107 kB] Get:113 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libctf-nobfd0 ppc64el 2.38-3ubuntu1 [107 kB] Get:114 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.38-3ubuntu1 [2421 kB] Get:115 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libbinutils ppc64el 2.38-3ubuntu1 [678 kB] Get:116 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el binutils ppc64el 2.38-3ubuntu1 [3168 B] Get:117 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el binutils-common ppc64el 2.38-3ubuntu1 [221 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main ppc64el cpp-11 ppc64el 11.2.0-18ubuntu1 [8802 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11-base ppc64el 11.2.0-18ubuntu1 [21.1 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main ppc64el libprocps8 ppc64el 2:3.3.17-6ubuntu2 [40.1 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main ppc64el libss2 ppc64el 1.46.5-2ubuntu1 [13.6 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main ppc64el mawk ppc64el 1.3.4.20200120-3 [114 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main ppc64el procps ppc64el 2:3.3.17-6ubuntu2 [404 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main ppc64el sensible-utils all 0.0.17 [20.1 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main ppc64el usrmerge all 25ubuntu2 [54.7 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main ppc64el openssl ppc64el 3.0.1-0ubuntu1 [1192 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main ppc64el ca-certificates all 20211016 [148 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main ppc64el readline-common all 8.1.2-1 [53.5 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main ppc64el libreadline8 ppc64el 8.1.2-1 [178 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsqlite3-0 ppc64el 3.37.2-2 [738 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main ppc64el tzdata all 2021e-1ubuntu1 [343 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main ppc64el dpkg-dev all 1.21.1ubuntu1 [922 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdpkg-perl all 1.21.1ubuntu1 [236 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main ppc64el make ppc64el 4.3-4.1build1 [211 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main ppc64el lto-disabled-list all 23 [12.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main ppc64el libfakeroot ppc64el 1.28-1ubuntu1 [33.8 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main ppc64el fakeroot ppc64el 1.28-1ubuntu1 [62.8 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg ppc64el 2.2.27-3ubuntu1 [657 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgconf ppc64el 2.2.27-3ubuntu1 [103 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg-agent ppc64el 2.2.27-3ubuntu1 [246 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main ppc64el lockfile-progs ppc64el 0.1.19 [10.2 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main ppc64el pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 6s (15.9 MB/s) (Reading database ... 13185 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23249325 ppc64el jammy-proposed -c chroot:build-PACKAGEBUILD-23249325 --arch=ppc64el --dist=jammy-proposed --nolog python-biopython_1.79+dfsg-2build1.dsc Initiating build PACKAGEBUILD-23249325 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:02:23 UTC 2022 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-022.buildd +==============================================================================+ | python-biopython 1.79+dfsg-2build1 (ppc64el) Thu, 17 Mar 2022 08:57:40 +0000 | +==============================================================================+ Package: python-biopython Version: 1.79+dfsg-2build1 Source Version: 1.79+dfsg-2build1 Distribution: jammy-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23249325/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-VjQZCa/resolver-JX5i0W' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.79+dfsg-2build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biopython-VjQZCa/python-biopython-1.79+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-VjQZCa' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [643 B] Get:5 copy:/<>/apt_archive ./ Packages [679 B] Fetched 2285 B in 0s (52.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libbrotli1 libbsd0 libcairo2 libcifpp-data libcifpp2 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu70 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-minimal samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo clustalx seaview dh-make flit python3-build python3-tomli python3-installer emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-venv python-attr-doc python-cycler-doc python-lxml-doc dvipng ffmpeg fonts-staypuft gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils python-mpmath-doc python3-gmpy2 default-mysql-server | virtual-mysql-server python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc python3-pytest python-pil-doc python-psycopg2-doc python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python-rdflib-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc cwltool boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby libmail-sendmail-perl python3-bs4 python3-html5lib python3-yaml python3-olefile python3-sparqlwrapper amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa texlive-plain-generic tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost-regex1.74.0 libbrotli1 libbsd0 libcairo2 libcifpp-data libcifpp2 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libice6 libicu70 libidn12 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-isodate python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mmtf python3-mpmath python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3-unittest2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-minimal samtools sbuild-build-depends-main-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6-blt2.5 ucf unicode-data wise wise-data x11-common xdg-utils zlib1g-dev 0 upgraded, 250 newly installed, 0 to remove and 0 not upgraded. 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2.1-3.1build2 [33.4 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main ppc64el libwebp7 ppc64el 1.2.2-2 [303 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtiff5 ppc64el 4.3.0-6 [247 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxpm4 ppc64el 1:3.5.12-1build1 [47.4 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgd3 ppc64el 2.3.0-2ubuntu2 [163 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build1 [367 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main ppc64el mysql-common all 5.8+1.0.8 [7212 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmysqlclient21 ppc64el 8.0.28-0ubuntu4 [1329 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg2-3ubuntu1 [23.2 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg2-3ubuntu1 [68.8 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main ppc64el libldap-2.5-0 ppc64el 2.5.11+dfsg-1~exp1ubuntu3 [220 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpq5 ppc64el 14.2-1 [175 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-11ubuntu1 [3359 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/universe ppc64el emboss-data all 6.6.0+dfsg-11ubuntu1 [61.0 MB] Get:113 http://ftpmaster.internal/ubuntu jammy/universe ppc64el emboss ppc64el 6.6.0+dfsg-11ubuntu1 [1014 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/universe ppc64el fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/universe ppc64el fonts-lyx all 2.3.6-1 [159 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgs9-common all 9.55.0~dfsg1-0ubuntu4 [752 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main ppc64el libavahi-common-data ppc64el 0.8-5ubuntu4 [24.2 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main ppc64el libavahi-common3 ppc64el 0.8-5ubuntu4 [25.7 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main ppc64el libavahi-client3 ppc64el 0.8-5ubuntu4 [31.5 kB] Get:120 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libcups2 ppc64el 2.4.1op1-1ubuntu3 [332 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main ppc64el libidn12 ppc64el 1.38-4 [65.4 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main ppc64el libijs-0.35 ppc64el 0.35-15build1 [17.8 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjbig2dec0 ppc64el 0.19-3build1 [91.5 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main ppc64el libopenjp2-7 ppc64el 2.4.0-6 [214 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpaper1 ppc64el 1.1.28build1 [13.9 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgs9 ppc64el 9.55.0~dfsg1-0ubuntu4 [6387 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main ppc64el ghostscript ppc64el 9.55.0~dfsg1-0ubuntu4 [50.0 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libnetpbm10 ppc64el 2:10.0-15.4 [67.4 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/universe ppc64el netpbm ppc64el 2:10.0-15.4 [1108 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpaper-utils ppc64el 1.1.28build1 [8712 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkpathsea6 ppc64el 2021.20210626.59705-1build1 [67.7 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main ppc64el libptexenc1 ppc64el 2021.20210626.59705-1build1 [40.7 kB] Get:133 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsynctex2 ppc64el 2021.20210626.59705-1build1 [63.4 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtexlua53 ppc64el 2021.20210626.59705-1build1 [160 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main ppc64el t1utils ppc64el 1.41-4build1 [69.1 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpixman-1-0 ppc64el 0.40.0-1build3 [305 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxcb-render0 ppc64el 1.14-3ubuntu2 [17.2 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxcb-shm0 ppc64el 1.14-3ubuntu2 [6002 B] Get:139 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcairo2 ppc64el 1.16.0-5ubuntu2 [787 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgraphite2-3 ppc64el 1.3.14-1build1 [85.5 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main ppc64el libharfbuzz0b ppc64el 2.7.4-1ubuntu3 [445 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libteckit0 ppc64el 2.5.11+ds1-1 [422 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main ppc64el libice6 ppc64el 2:1.0.10-1build1 [50.1 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsm6 ppc64el 2:1.2.3-1build1 [18.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxt6 ppc64el 1:1.2.1-1 [202 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxmu6 ppc64el 2:1.1.3-3 [57.2 kB] Get:147 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libxaw7 ppc64el 2:1.0.14-1 [227 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxi6 ppc64el 2:1.8-1 [38.4 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libzzip-0-13 ppc64el 0.13.72+dfsg.1-1.1 [29.7 kB] Get:150 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-binaries ppc64el 2021.20210626.59705-1build1 [12.3 MB] Get:151 http://ftpmaster.internal/ubuntu jammy/main ppc64el xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-base all 2021.20220204-1 [21.0 MB] Get:153 http://ftpmaster.internal/ubuntu jammy/universe ppc64el hevea ppc64el 2.35-1build1 [2105 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libapache-pom-java all 18-1 [4720 B] Get:155 http://ftpmaster.internal/ubuntu jammy/main ppc64el libblas3 ppc64el 3.10.0-2ubuntu1 [152 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libcommons-parent-java all 43-1 [10.8 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libcommons-logging-java all 1.2-2 [60.3 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/main ppc64el libnghttp2-14 ppc64el 1.43.0-1build2 [89.0 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build3 [65.8 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/main ppc64el libssh-4 ppc64el 0.9.6-2 [236 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcurl3-gnutls ppc64el 7.81.0-1 [367 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main ppc64el libexpat1-dev ppc64el 2.4.7-1 [154 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgfortran5 ppc64el 12-20220313-1ubuntu1 [551 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhtscodecs2 ppc64el 1.1.1-3 [80.0 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libhts3 ppc64el 1.13+ds-2build1 [506 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main ppc64el libimagequant0 ppc64el 2.17.0-1 [40.2 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libjs-jquery-ui all 1.13.1+dfsg-1 [253 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjs-underscore all 1.13.2~dfsg-2 [118 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/main ppc64el libjs-sphinxdoc all 4.3.2-1 [139 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblapack3 ppc64el 3.10.0-2ubuntu1 [2038 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.3-10 [32.2 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblcms2-2 ppc64el 2.12~rc1-2build1 [224 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libmbedcrypto7 ppc64el 2.28.0-1 [261 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libmbedx509-1 ppc64el 2.28.0-1 [52.5 kB] Get:176 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libmbedtls14 ppc64el 2.28.0-1 [89.4 kB] Get:177 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpython3.10 ppc64el 3.10.3-1 [2156 kB] Get:178 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu8 [177 kB] Get:179 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libpython3.10-dev ppc64el 3.10.3-1 [5022 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpython3-dev ppc64el 3.10.1-0ubuntu2 [7482 B] Get:181 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpython3-all-dev ppc64el 3.10.1-0ubuntu2 [924 B] Get:182 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libqhull-r8.0 ppc64el 2020.2-4 [222 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/main ppc64el libraqm0 ppc64el 0.7.0-4ubuntu1 [14.0 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/main ppc64el libwebpdemux2 ppc64el 1.2.2-2 [11.3 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/main ppc64el libwebpmux3 ppc64el 1.2.2-2 [25.3 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxslt1.1 ppc64el 1.1.34-4build1 [185 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe ppc64el mafft ppc64el 7.490-1 [975 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe ppc64el muscle ppc64el 1:3.8.1551-2build1 [275 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-9 [3519 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-3build1 [13.5 MB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe ppc64el phylip ppc64el 1:3.697+dfsg-2 [888 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe ppc64el prank ppc64el 0.0.170427+dfsg-3 [353 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe ppc64el preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe ppc64el probcons ppc64el 1.12-14 [174 kB] Get:195 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python-matplotlib-data all 3.5.1-2build1 [2942 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-all ppc64el 3.10.1-0ubuntu2 [918 B] Get:197 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3.10-dev ppc64el 3.10.3-1 [507 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-dev ppc64el 3.10.1-0ubuntu2 [26.0 kB] Get:199 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-all-dev ppc64el 3.10.1-0ubuntu2 [918 B] Get:200 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-appdirs all 1.4.4-2 [11.4 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-attr all 21.2.0-1 [44.0 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-brotli ppc64el 1.0.9-2build4 [373 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-cycler all 0.11.0-1 [8156 B] Get:204 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-six all 1.16.0-3 [12.5 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-dateutil all 2.8.1-6 [78.4 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-numpy ppc64el 1:1.21.5-1 [8639 kB] Get:208 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-scipy ppc64el 1.8.0-1exp2 [18.3 MB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-ufolib2 all 0.13.1+dfsg1-1 [32.2 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-mpmath all 1.2.1-2 [419 kB] Get:211 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-sympy all 1.9-1 [4312 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-tz all 2021.3-1 [33.3 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-fs all 2.4.12-1 [84.9 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-lxml ppc64el 4.8.0-1 [1624 kB] Get:215 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-lz4 ppc64el 3.1.3+dfsg-1build2 [35.9 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-unicodedata2 ppc64el 14.0.0+ds-8 [380 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/universe ppc64el unicode-data all 14.0.0-1.1 [8206 kB] Get:218 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-fonttools ppc64el 4.29.1-2build1 [821 kB] Get:219 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-isodate all 0.6.1-1 [24.7 kB] Get:220 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-kiwisolver ppc64el 1.3.2-1 [67.8 kB] Get:221 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-pil ppc64el 9.0.1-1 [467 kB] Get:222 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-tk ppc64el 3.10.3-0ubuntu2 [105 kB] Get:223 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-pil.imagetk ppc64el 9.0.1-1 [10.1 kB] Get:224 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-pyparsing all 2.4.7-1 [61.4 kB] Get:225 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-packaging all 21.3-1 [30.7 kB] Get:226 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el python3-matplotlib ppc64el 3.5.1-2build1 [5993 kB] Get:227 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-msgpack ppc64el 1.0.3-1 [87.2 kB] Get:228 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-mmtf all 1.1.2-3 [15.9 kB] Get:229 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-mysqldb ppc64el 1.4.6-1 [50.8 kB] Get:230 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-networkx all 2.4-4ubuntu1 [855 kB] Get:231 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-psycopg2 ppc64el 2.9.2-1 [167 kB] Get:232 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el python3-pygments all 2.11.2+dfsg-2 [750 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/universe ppc64el python3-rdflib all 5.0.0-2 [177 kB] Get:234 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-renderpm ppc64el 3.6.8-1 [74.7 kB] Get:235 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-reportlab-accel ppc64el 3.6.8-1 [23.2 kB] Get:236 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-reportlab all 3.6.8-1 [559 kB] Get:237 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-setuptools all 59.6.0-1.2 [339 kB] Get:238 http://ftpmaster.internal/ubuntu jammy/main ppc64el python3-unittest2 all 1.1.0-9 [76.3 kB] Get:239 http://ftpmaster.internal/ubuntu jammy/universe ppc64el samtools ppc64el 1.13-4 [586 kB] Get:240 http://ftpmaster.internal/ubuntu jammy/universe ppc64el t-coffee ppc64el 13.41.0.28bdc39+dfsg-4 [1038 kB] Get:241 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-fonts-recommended all 2021.20220204-1 [4972 kB] Get:242 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-latex-base all 2021.20220204-1 [1128 kB] Get:243 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libfontbox-java all 1:1.8.16-2 [207 kB] Get:244 http://ftpmaster.internal/ubuntu jammy/universe ppc64el libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:245 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-latex-recommended all 2021.20220204-1 [14.4 MB] Get:246 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-pictures all 2021.20220204-1 [8720 kB] Get:247 http://ftpmaster.internal/ubuntu jammy/universe ppc64el texlive-latex-extra all 2021.20220204-1 [13.9 MB] Get:248 http://ftpmaster.internal/ubuntu jammy/universe ppc64el wise-data all 2.4.1-23 [76.8 kB] Get:249 http://ftpmaster.internal/ubuntu jammy/universe ppc64el wise ppc64el 2.4.1-23 [1340 kB] Get:250 http://ftpmaster.internal/ubuntu jammy/universe ppc64el fasttree ppc64el 2.1.11-2 [218 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 315 MB in 17s (18.8 MB/s) Selecting previously unselected package libpython3.10-minimal:ppc64el. (Reading database ... 15305 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.3-1_ppc64el.deb ... Unpacking libpython3.10-minimal:ppc64el (3.10.3-1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.4.7-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.4.7-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.3-1_ppc64el.deb ... Unpacking python3.10-minimal (3.10.3-1) ... Setting up libpython3.10-minimal:ppc64el (3.10.3-1) ... Setting up libexpat1:ppc64el (2.4.7-1) ... Setting up python3.10-minimal (3.10.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15607 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.1-0ubuntu2_ppc64el.deb ... Unpacking python3-minimal (3.10.1-0ubuntu2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_6.0.0_all.deb ... Unpacking media-types (6.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1ubuntu1_all.deb ... Unpacking mailcap (3.70+nmu1ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:ppc64el. Preparing to unpack .../4-libmpdec3_2.5.1-2build1_ppc64el.deb ... Unpacking libmpdec3:ppc64el (2.5.1-2build1) ... Selecting previously unselected package libpython3.10-stdlib:ppc64el. Preparing to unpack .../5-libpython3.10-stdlib_3.10.3-1_ppc64el.deb ... Unpacking libpython3.10-stdlib:ppc64el (3.10.3-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../6-python3.10_3.10.3-1_ppc64el.deb ... Unpacking python3.10 (3.10.3-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. 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Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:ppc64el (2.7.4-1ubuntu3) ... Setting up fasttree (2.1.11-2) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up python3.9-minimal (3.9.10-2) ... Setting up python-matplotlib-data (3.5.1-2build1) ... Setting up libwebpmux3:ppc64el (1.2.2-2) ... Setting up libbsd0:ppc64el (0.11.5-1) ... Setting up mailcap (3.70+nmu1ubuntu1) ... Setting up libelf1:ppc64el (0.186-1) ... Setting up dialign (2.2.1-11) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:ppc64el (2021.20210626.59705-1build1) ... Setting up libpython3.9-stdlib:ppc64el (3.9.10-2) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libjs-underscore (1.13.2~dfsg-2) ... Setting up libicu70:ppc64el (70.1-2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libgs9-common (9.55.0~dfsg1-0ubuntu4) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libpaper1:ppc64el (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:ppc64el (2:1.0.10-1build1) ... Setting up libdw1:ppc64el (0.186-1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu4) ... Setting up liblapack3:ppc64el (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libxcb1:ppc64el (1.14-3ubuntu2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up mime-support (3.66) ... Setting up libmbedx509-1:ppc64el (2.28.0-1) ... Setting up libmbedtls14:ppc64el (2.28.0-1) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:ppc64el (1.14-3ubuntu2) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up wise (2.4.1-23) ... Setting up libwebpdemux2:ppc64el (1.2.2-2) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:ppc64el (0.8-5ubuntu4) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:ppc64el (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up clustalo (1.2.4-7) ... Setting up libldap-2.5-0:ppc64el (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up libpython3.10-stdlib:ppc64el (3.10.3-1) ... Setting up tex-common (6.17) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libjs-jquery-ui (1.13.1+dfsg-1) ... Setting up libptexenc1:ppc64el (2021.20210626.59705-1build1) ... Setting up libraqm0:ppc64el (0.7.0-4ubuntu1) ... Setting up libboost-regex1.74.0:ppc64el (1.74.0-14ubuntu2) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-8) ... Setting up debugedit (1:5.0-4) ... Setting up libx11-6:ppc64el (2:1.7.2-2) ... Setting up libtiff5:ppc64el (4.3.0-6) ... Setting up libfontconfig1:ppc64el (2.13.1-4.2ubuntu4) ... Setting up libsm6:ppc64el (2:1.2.3-1build1) ... Setting up libxml2:ppc64el (2.9.13+dfsg-1) ... Setting up libavahi-client3:ppc64el (0.8-5ubuntu4) ... Setting up python3.9 (3.9.10-2) ... Setting up libpython3-stdlib:ppc64el (3.10.1-0ubuntu2) ... Setting up liblbfgsb0:ppc64el (3.0+dfsg.3-10) ... Setting up automake (1:1.16.5-1.1ubuntu4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:ppc64el (3.10.3-1) ... Setting up flex (2.6.4-8build1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up python3.10 (3.10.3-1) ... Setting up libxpm4:ppc64el (1:3.5.12-1build1) ... Setting up libxrender1:ppc64el (1:0.9.10-1build3) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libpq5:ppc64el (14.2-1) ... Setting up libxext6:ppc64el (2:1.3.4-1) ... Setting up libcurl3-gnutls:ppc64el (7.81.0-1) ... Setting up python3 (3.10.1-0ubuntu2) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:ppc64el (1.16.0-5ubuntu2) ... Setting up python3-tz (2021.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ncbi-blast+ (2.12.0+ds-3build1) ... Setting up python3-mysqldb (1.4.6-1) ... Setting up python3-six (1.16.0-3) ... Setting up dh-autoreconf (20) ... Setting up python3-isodate (0.6.1-1) ... Setting up python3-pil:ppc64el (9.0.1-1) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up libcifpp2:ppc64el (2.0.5-1build1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-brotli (1.0.9-2build4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:ppc64el (3.6.8-1) ... Setting up libgd3:ppc64el (2.3.0-2ubuntu2) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up python3-psycopg2 (2.9.2-1) ... Setting up libpython3.10-dev:ppc64el (3.10.3-1) ... Setting up netpbm (2:10.0-15.4) ... Setting up libxt6:ppc64el (1:1.2.1-1) ... Setting up python3-reportlab (3.6.8-1) ... Setting up libcups2:ppc64el (2.4.1op1-1ubuntu3) ... Setting up python3.10-dev (3.10.3-1) ... Setting up python3-rdflib (5.0.0-2) ... Setting up libxslt1.1:ppc64el (1.1.34-4build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up emboss-lib (6.6.0+dfsg-11ubuntu1) ... Setting up python3-msgpack (1.0.3-1) ... Setting up libxss1:ppc64el (1:1.2.3-1build1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.10.3-0ubuntu2) ... Setting up python3-appdirs (1.4.4-2) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.3-0ubuntu2) ... Setting up dh-python (5.20220215) ... Setting up python3-sympy (1.9-1) ... Setting up python3-attr (21.2.0-1) ... Setting up libxft2:ppc64el (2.3.3-0ubuntu4) ... Setting up libhts3:ppc64el (1.13+ds-2build1) ... Setting up libxmu6:ppc64el (2:1.1.3-3) ... Setting up libpython3-dev:ppc64el (3.10.1-0ubuntu2) ... Setting up python3-renderpm:ppc64el (3.6.8-1) ... Setting up emboss (6.6.0+dfsg-11ubuntu1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up libgs9:ppc64el (9.55.0~dfsg1-0ubuntu4) ... Setting up libxi6:ppc64el (2:1.8-1) ... Setting up python3-lz4 (3.1.3+dfsg-1build2) ... Setting up python3-unicodedata2 (14.0.0+ds-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:ppc64el (8.6.12-1) ... Setting up python3-all (3.10.1-0ubuntu2) ... Setting up debhelper (13.6ubuntu1) ... Setting up libxaw7:ppc64el (2:1.0.14-1) ... Setting up dssp (4.0.4-1) ... Setting up ghostscript (9.55.0~dfsg1-0ubuntu4) ... Setting up python3-networkx (2.4-4ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up samtools (1.13-4) ... Setting up python3-fs (2.4.12-1) ... Setting up python3-pygments (2.11.2+dfsg-2) ... Setting up python3-packaging (21.3-1) ... Setting up libpython3-all-dev:ppc64el (3.10.1-0ubuntu2) ... Setting up python3-dev (3.10.1-0ubuntu2) ... Setting up python3-unittest2 (1.1.0-9) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode Setting up python3-numpy (1:1.21.5-1) ... Setting up texlive-binaries (2021.20210626.59705-1build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lxml:ppc64el (4.8.0-1) ... Setting up texlive-base (2021.20220204-1) ... /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr /usr/bin/ucfr tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-all-dev (3.10.1-0ubuntu2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build1) ... Setting up python3-scipy (1.8.0-1exp2) ... Setting up blt (2.5.3+dfsg-4.1build1) ... Setting up python3-tk:ppc64el (3.10.3-0ubuntu2) ... Setting up python3-mmtf (1.1.2-3) ... Setting up texlive-latex-base (2021.20220204-1) ... Setting up python3-pil.imagetk:ppc64el (9.0.1-1) ... Setting up texlive-latex-recommended (2021.20220204-1) ... Setting up hevea (2.35-1build1) ... Setting up texlive-pictures (2021.20220204-1) ... Setting up texlive-fonts-recommended (2021.20220204-1) ... Setting up texlive-latex-extra (2021.20220204-1) ... Setting up python3-fonttools (4.29.1-2build1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-matplotlib (3.5.1-2build1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-104-generic #118-Ubuntu SMP Wed Mar 2 19:02:23 UTC 2022 ppc64el (ppc64le) Toolchain package versions: binutils_2.38-3ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-18ubuntu1 gcc-11_11.2.0-18ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.2.0-18ubuntu1 libstdc++6_12-20220313-1ubuntu1 linux-libc-dev_5.15.0-23.23 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.4.1 autoconf_2.71-2 automake_1:1.16.5-1.1ubuntu4 autopoint_0.21-4ubuntu3 autotools-dev_20220109.1 base-files_12ubuntu2 base-passwd_3.5.52 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, mafft , muscle , ncbi-blast+ , phylip , phyml [any-amd64 any-i386] , prank , probcons , python3-networkx , python3-mysqldb , python3-matplotlib , python3-mmtf , python3-pil , python3-rdflib , python3-renderpm , python3-psycopg2 , python3-pygments , python3-scipy , python3-setuptools, python3-unittest2 , raxml [any-amd64 any-i386] , samtools , t-coffee , wise Package-List: python-biopython-doc deb doc optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: 8eff51eb36ef780f81ae7d8679c95b89d0c113a2 9861184 python-biopython_1.79+dfsg.orig.tar.xz 347bafbd0d13d221e7fe8ea1615b3e781acfaea1 18304 python-biopython_1.79+dfsg-2build1.debian.tar.xz Checksums-Sha256: cbb9fcc75832a13e4fee36df837395be8396a4843321bba5e7ddc03da8267583 9861184 python-biopython_1.79+dfsg.orig.tar.xz e2f3f96f2493ed43f7ec0a093653d628773083b2d392fe2fd4898c4662b44fb3 18304 python-biopython_1.79+dfsg-2build1.debian.tar.xz Files: 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gpgv: Signature made Wed Mar 16 21:45:08 2022 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./python-biopython_1.79+dfsg-2build1.dsc dpkg-source: info: extracting python-biopython in /<> dpkg-source: info: unpacking python-biopython_1.79+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.79+dfsg-2build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.patch dpkg-source: info: applying adjust-test_GraphicsBitmaps.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23249325 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23249325 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23249325 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.79+dfsg-2build1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p 3.10 I: pybuild base:237: python3.10 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.10/build' (and everything under it) 'build/bdist.linux-ppc64el' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild install -d /<>/python-biopython-1.79\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.10 I: pybuild base:237: python3.10 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build pybuild --build -i python{version} -p 3.10 I: pybuild base:237: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/pairwise2.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/kNN.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqRecord.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/MarkovModel.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/File.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/LogisticRegression.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/MaxEntropy.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/SeqFeature.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/NaiveBayes.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/Seq.py -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/bgzf.py -> /<>/.pybuild/cpython3_3.10/build/Bio creating /<>/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Affy creating /<>/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices creating /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO creating /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet creating /<>/.pybuild/cpython3_3.10/build/Bio/Application copying Bio/Application/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Application creating /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Blast creating /<>/.pybuild/cpython3_3.10/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/CAPS creating /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/.pybuild/cpython3_3.10/build/Bio/codonalign creating /<>/.pybuild/cpython3_3.10/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Compass creating /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Data creating /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Emboss creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez creating /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy creating /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/GenBank creating /<>/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Geo creating /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics creating /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram creating /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/.pybuild/cpython3_3.10/build/Bio/HMM creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf creating /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML creating /<>/.pybuild/cpython3_3.10/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Medline creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications creating /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar creating /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus creating /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/NMR creating /<>/.pybuild/cpython3_3.10/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway creating /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep copying Bio/PDB/PDBIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SASA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB creating /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/.pybuild/cpython3_3.10/build/Bio/phenotype creating /<>/.pybuild/cpython3_3.10/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen creating /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop creating /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Restriction creating /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SCOP creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO creating /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils creating /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing creating /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat creating /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer creating /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer creating /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt creating /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications creating /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML creating /<>/.pybuild/cpython3_3.10/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniGene creating /<>/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/.pybuild/cpython3_3.10/build/Bio/UniProt creating /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/.pybuild/cpython3_3.10/build/Bio/Wise creating /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/__init__.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeq.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/DBUtils.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/Loader.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/.pybuild/cpython3_3.10/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/.pybuild/cpython3_3.10/build/Bio copying Bio/Align/_aligners.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Align creating /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Cluster creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs creating /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/.pybuild/cpython3_3.10/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/.pybuild/cpython3_3.10/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-ppc64el-3.10 creating build/temp.linux-ppc64el-3.10/Bio creating build/temp.linux-ppc64el-3.10/Bio/Align powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Align/_aligners.c -o build/temp.linux-ppc64el-3.10/Bio/Align/_aligners.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/Align/_aligners.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so building 'Bio.cpairwise2' extension powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/cpairwise2module.c -o build/temp.linux-ppc64el-3.10/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.10/Python.h:130, from Bio/cpairwise2module.c:16: /usr/include/python3.10/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/cpairwise2module.o -o /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-ppc64el-3.10/Bio/Nexus powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Nexus/cnexus.c -o build/temp.linux-ppc64el-3.10/Bio/Nexus/cnexus.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/Nexus/cnexus.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-ppc64el-3.10/Bio/PDB creating build/temp.linux-ppc64el-3.10/Bio/PDB/QCPSuperimposer powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-ppc64el-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-ppc64el-3.10/Bio/motifs powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/motifs/_pwm.c -o build/temp.linux-ppc64el-3.10/Bio/motifs/_pwm.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/motifs/_pwm.o -o /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-ppc64el-3.10/Bio/Cluster powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/cluster.c -o build/temp.linux-ppc64el-3.10/Bio/Cluster/cluster.o powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/Cluster/clustermodule.c -o build/temp.linux-ppc64el-3.10/Bio/Cluster/clustermodule.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/Cluster/cluster.o build/temp.linux-ppc64el-3.10/Bio/Cluster/clustermodule.o -o /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so building 'Bio.PDB.kdtrees' extension powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/PDB/kdtrees.c -o build/temp.linux-ppc64el-3.10/Bio/PDB/kdtrees.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/PDB/kdtrees.o -o /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-ppc64el-3.10/Bio/SeqIO powerpc64le-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -fexceptions -g -fwrapv -O2 -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-ppc64el-3.10/Bio/SeqIO/_twoBitIO.o powerpc64le-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64el-3.10/Bio/SeqIO/_twoBitIO.o -o /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so cd Doc && make make[2]: Entering directory '/<>/Doc' sed "s/\@VERSION\@/1.79/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:683: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:744: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:568: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:574: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:578: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:581: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:584: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:591: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:665: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:786: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:807: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:869: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:951: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1192: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1251: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1261: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1323: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:949: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:957: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1095: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1316: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1774: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1805: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1808: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1809: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1835: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1835: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1864: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2486: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2555: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2763: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2763: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2969: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:303: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:339: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:449: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:465: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1407: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1496: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1501: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1525: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:285: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 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Rerun me to get cross-references right. Run, run, again... 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'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 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'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: 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./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: 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Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:547: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:228: Warning: Undefined block in text mode: 'CODE' 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./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:820: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:832: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:833: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:862: Warning: Undefined 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./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:29: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode 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./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:514: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:553: Warning: line too long ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: 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'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1053: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_seqio.tex:1386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1404: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:11: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_align.tex:1673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1688: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1701: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1719: Warning: Undefined block in text mode: 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block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1968: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1976: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1977: 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./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1981: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1982: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1983: Warning: Undefined block in 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Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1987: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1988: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1989: 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./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1992: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1994: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1995: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1999: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2001: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2002: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2005: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2012: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2014: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2014: Warning: line too long ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2060: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2062: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2134: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2296: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2409: Warning: line too long ./Tutorial/chapter_align.tex:2425: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2470: Warning: Undefined 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./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2695: Warning: line too long ./Tutorial/chapter_align.tex:2696: Warning: line too long ./Tutorial/chapter_align.tex:2697: Warning: line too long ./Tutorial/chapter_align.tex:2727: Warning: line too long ./Tutorial/chapter_align.tex:2728: Warning: line too long ./Tutorial/chapter_align.tex:2729: Warning: line too long ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2759: Warning: Undefined 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./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3391: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3415: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:50: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:59: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:286: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:288: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:302: Warning: Undefined block in text mode: 'CODE' [] 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[] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' 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text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1044: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1078: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1394: 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./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined block in text mode: 'CODE' [] 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text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:362: 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./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: 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citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:602: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:757: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:780: Warning: Undefined block in text 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./Tutorial/chapter_motifs.tex:1512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1530: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1532: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text 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failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:549: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:554: Warning: 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./Tutorial/chapter_cluster.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:624: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: 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./Tutorial/chapter_learning.tex:290: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:298: Warning: 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Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: 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Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: 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./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:250: Warning: 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./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:324: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:653: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:684: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:713: Warning: Undefined block in text mode: 'CODE' [] 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(./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 52 undefined on input line 807. (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF70D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE9D788471CB66B7D26E11C71E228 489B2.pygtex [52]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 851--856 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:SeqIO-sort' on page 53 undefined on input line 86 9. Overfull \hbox (4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [53]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 54 undefined on input line 951. 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [60] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1404. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. 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LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. 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Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 141 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . 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(./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C789D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D49D788471CB66B7D26E11C71E228 489B2.pygtex [178]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B7539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E599D788471CB66B7D26E11C71E228 489B2.pygtex [179]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A8EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D03209D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E79D788471CB66B7D26E11C71E228 489B2.pygtex [180]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E861699D788471CB66B7D26E11C71E228 489B2.pygtex)) [181] (./Tutorial/chapter_pdb.tex Chapter 11. 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[199] [200] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A749D788471CB66B7D26E11C71E228 489B2.pygtex) [201] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D9D788471CB66B7D26E11C71E228 489B2.pygtex) [202] LaTeX Warning: Citation `hamelryck2003b' on page 203 undefined on input line 13 80. LaTeX Warning: Citation `majumdar2005' on page 203 undefined on input line 1381 . ) [203] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C07391D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [204])) [205] (./Tutorial/chapter_phylo.tex Chapter 13. 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[211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. 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LaTeX Warning: Citation `dehoon2004' on page 245 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 245 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 245 undefined on input line 30. [245] [246] [247] LaTeX Warning: Citation `snedecor1989' on page 248 undefined on input line 154. [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 249 undefined on input line 183. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 317 undefined on input line 478. 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[326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 328 undefined on input line 1172. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 328 undefined on input line 1186. Excluding 'htmlonly' comment. 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(./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 338 undefined on input line 17 41. ) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) LaTeX Warning: Reference `sec:doctest' on page 339 undefined on input line 55. 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A27779D788471CB66B7D26E11C71E228 489B2.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F40249D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479FEF9ECD8502EC2CF3722B913689E 0BC32.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F16D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C9D788471CB66B7D26E11C71E228 489B2.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE59D788471CB66B7D26E11C71E228 489B2.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B716929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB009D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E599D788471CB66B7D26E11C71E228 489B2.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A92539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D69D788471CB66B7D26E11C71E228 489B2.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D439D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD169D788471CB66B7D26E11C71E228 489B2.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E8939D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C630649D788471CB66B7D26E11C71E228 489B2.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A4429D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F9863689D788471CB66B7D26E11C71E228 489B2.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B0459D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA29D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). 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The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC9D788471CB66B7D26E11C71E228 489B2.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B519559D788471CB66B7D26E11C71E228 489B2.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D079D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE3279D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A039D788471CB66B7D26E11C71E228 489B2.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F79D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC269D788471CB66B7D26E11C71E228 489B2.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A4569D788471CB66B7D26E11C71E228 489B2.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C9D788471CB66B7D26E11C71E228 489B2.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B737809D788471CB66B7D26E11C71E228 489B2.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE5735779D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA49D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A9D788471CB66B7D26E11C71E228 489B2.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD8804449D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C7879D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C49D788471CB66B7D26E11C71E228 489B2.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E98689D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C99339D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C1769D788471CB66B7D26E11C71E228 489B2.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA9D788471CB66B7D26E11C71E228 489B2.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B99D788471CB66B7D26E11C71E228 489B2.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF27919D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D29D788471CB66B7D26E11C71E228 489B2.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D019D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE6017358279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A2500D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C09D788471CB66B7D26E11C71E228 489B2.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB349D788471CB66B7D26E11C71E228 489B2.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E9D788471CB66B7D26E11C71E228 489B2.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF926269D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED18D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7ACD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F728414977D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAFD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E816656D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A1D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20ADD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B024803195D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC73D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF9D788471CB66B7D26E11C71E228 489B2.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB530065D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A40D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D043D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C9739D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C07179D788471CB66B7D26E11C71E228 489B2.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C379D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B494079159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. 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Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. 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Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FBEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB28EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B8D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B383D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D9D788471CB66B7D26E11C71E228 489B2.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. 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Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...tions and locations}{36}{subsection.4.3.2} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD9D788471CB66B7D26E11C71E228 489B2.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . 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(4.48064pt too wide) in paragraph at lines 894--897 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [60]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41041CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A27779D788471CB66B7D26E11C71E228 489B2.pygtex) [61] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) 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[]\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D79D788471CB66B7D26E11C71E228 489B2.pygtex) [67] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1385--1389 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DBD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F40249D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479FEF9ECD8502EC2CF3722B913689E 0BC32.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F16D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE69D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C9D788471CB66B7D26E11C71E228 489B2.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE59D788471CB66B7D26E11C71E228 489B2.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B716929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB009D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E599D788471CB66B7D26E11C71E228 489B2.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A92539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D69D788471CB66B7D26E11C71E228 489B2.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D439D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD169D788471CB66B7D26E11C71E228 489B2.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F539D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E8939D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C630649D788471CB66B7D26E11C71E228 489B2.pygtex [85]) (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A4429D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F9863689D788471CB66B7D26E11C71E228 489B2.pygtex [86]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B0459D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA29D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1128--1132 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). 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The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1903--1907 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 478. ) [131] [132 <./images/BlastRecord.png>] [133 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346EEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [134] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC9D788471CB66B7D26E11C71E228 489B2.pygtex [135]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B519559D788471CB66B7D26E11C71E228 489B2.pygtex [136]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D079D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE3279D788471CB66B7D26E11C71E228 489B2.pygtex [137]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A09D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A039D788471CB66B7D26E11C71E228 489B2.pygtex) [138] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F79D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC269D788471CB66B7D26E11C71E228 489B2.pygtex [139]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A4569D788471CB66B7D26E11C71E228 489B2.pygtex [140]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C9D788471CB66B7D26E11C71E228 489B2.pygtex) [141] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B737809D788471CB66B7D26E11C71E228 489B2.pygtex) [142] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE5735779D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA49D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A9D788471CB66B7D26E11C71E228 489B2.pygtex [143]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD8804449D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C7879D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA129D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE19D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A35369099D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE989D788471CB66B7D26E11C71E228 489B2.pygtex [144]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B99D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB99D788471CB66B7D26E11C71E228 489B2.pygtex [145]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B149929D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD49D788471CB66B7D26E11C71E228 489B2.pygtex) [146] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B979D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B9D788471CB66B7D26E11C71E228 489B2.pygtex) [147] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA99D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C734609D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C49D788471CB66B7D26E11C71E228 489B2.pygtex [148]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E98689D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C99339D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C1769D788471CB66B7D26E11C71E228 489B2.pygtex)) [149] [150] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA9D788471CB66B7D26E11C71E228 489B2.pygtex) [214] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A89D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF29D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B99D788471CB66B7D26E11C71E228 489B2.pygtex [215 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[218] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [219 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [220] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [221] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF27919D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 708--711 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [222] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D39D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D29D788471CB66B7D26E11C71E228 489B2.pygtex) [223]) [224] (./Tutorial/chapter_motifs.tex Chapter 14. 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[252] [253] [254] [255] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED41409D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D019D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE6017358279D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A2500D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C09D788471CB66B7D26E11C71E228 489B2.pygtex [256]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB349D788471CB66B7D26E11C71E228 489B2.pygtex) [257] [258] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E9D788471CB66B7D26E11C71E228 489B2.pygtex) [259] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF926269D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED18D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7ACD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [260] [261] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [302] Excluding 'htmlonly' comment. [303 <./image s/three_track_cl.png>] [304 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F728414977D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAFD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [305] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CCD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [306] [307 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E692955720887D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[333] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CDD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [334 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [335 <./images/gc_plot.png>] (./_minted-Tutorial/80A47C8780CE3021D53829563E816656D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [336 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A1D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20ADD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [337]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B024803195D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [338 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [339 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC73D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFAEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE21EF9ECD8502EC2CF3722B913689E 0BC32.pygtex [340]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643DD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA4814535D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F90EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF9D788471CB66B7D26E11C71E228 489B2.pygtex) [341] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB530065D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A40D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D043D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7CD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [342]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C9739D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA9D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C07179D788471CB66B7D26E11C71E228 489B2.pygtex [343]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C379D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/5740381D1C5E453AC66BA80B494079159D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/000D4DEB94FD9E29F9808AD61CE02B1E9D788471CB66B7D26E11C71E228 489B2.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA509D788471CB66B7D26E11C71E228 489B2.pygtex [344]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E39D788471CB66B7D26E11C71E228 489B2.pygtex)) [345] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062141CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [346] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCCEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex [347]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A7D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) [348] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB9D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [349]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F441CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA29D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B8297711D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [350]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F41CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) [351] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B0345641CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC4341CFBAB8D39E8FFAF3C5D885168 6F649.pygtex)) [352] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [353] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A3D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C6D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8BD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D00EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8DEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F04725EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) [354] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A3798D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC579D788471CB66B7D26E11C71E228 489B2.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1ED5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7FD5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D2D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E4D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex [355]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FBEF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB28EF9ECD8502EC2CF3722B913689E 0BC32.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B8D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B383D5CCE6351B83FE352E9906AED2A 3B7C6.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D9D788471CB66B7D26E11C71E228 489B2.pygtex)) [356] (./Tutorial/chapter_contributing.tex Chapter 23. [357] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B94494492541CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A3641CFBAB8D39E8FFAF3C5D885168 6F649.pygtex) [358]) [359] (./Tutorial/chapter_appendix.tex Chapter 24. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. 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[9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. 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(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165365 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165365 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/Doc' make[1]: Leaving directory '/<>' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.10 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:237: set -e; \ mkdir -p /<>/.pybuild/cpython3_3.10/build/home; \ mkdir -p /<>/.pybuild/cpython3_3.10/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/Tutorial /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Doc/examples /<>/.pybuild/cpython3_3.10/build/Doc; \ cp -a Tests /<>/.pybuild/cpython3_3.10/build; \ cd /<>/.pybuild/cpython3_3.10/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/.pybuild/cpython3_3.10/build/home python3.10 run_tests.py --offline /<>/.pybuild/cpython3_3.10/build/Tests/run_tests.py:33: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives import distutils.util test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Error in setFont('Times-Roman',10) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py:252: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypeptide ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:1256: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn("Non-standard molecule type: %s" % mol_type, BiopythonWarning) /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py:548: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2008: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py:2954: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_psw ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 512 tests in 348.465 seconds Skipping any tests requiring internet access Python version: 3.10.3 (main, Mar 16 2022, 17:19:40) [GCC 11.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-WeTSDRSa mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -d /<>/python-biopython-1.79\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.10 --dest-dir /<>/python-biopython-1.79\+dfsg/debian/tmp I: pybuild base:237: /usr/bin/python3 setup.py install --root /<>/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.10 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIWWW.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/Applications.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/ParseBlastTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Applications.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIWWW.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/NCBIXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Blast/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/CelFile.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Affy/__pycache__/CelFile.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Newick.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_io.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Consensus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAOIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/CDAO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NewickIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Phyml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/_Raxml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PhyloXMLIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXMLIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/_cdao_owl.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_paml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/chi2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/BaseTree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_io.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Newick.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/CDAOIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/Consensus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/BaseTree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/PhyloXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NexusIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/__pycache__/NewickIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Phylo/NeXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Residue.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/SASA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ResidueDepth.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmtf/mmtfio.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/HSExposure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ic_data.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/StructureBuilder.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/vectors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Chain.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/NeighborSearch.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/mmcifio.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBExceptions.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/AbstractPropertyMap.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/NACCESS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Dice.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Selection.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Entity.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/ic_rebuild.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Atom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/SCADIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PICIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Model.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Structure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/DSSP.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PSEA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/Superimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SCADIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/SASA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Entity.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NeighborSearch.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Selection.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/vectors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Superimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ResidueDepth.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Atom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Dice.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Polypeptide.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/internal_coords.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/DSSP.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PSEA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/mmcifio.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Structure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureAlignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Residue.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/MMCIFParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_rebuild.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBExceptions.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PICIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/StructureBuilder.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Model.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/NACCESS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/Chain.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/FragmentMapper.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/HSExposure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/ic_data.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/__pycache__/PDBParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/internal_coords.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/PDBList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB copying /<>/.pybuild/cpython3_3.10/build/Bio/pairwise2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS copying /<>/.pybuild/cpython3_3.10/build/Bio/CAPS/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/CAPS/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PhdIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SeqXmlIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SffIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/AbiIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/TabIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/IgIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PirIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SwissIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/GckIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/UniprotIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/InsdcIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/PdbIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/NibIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/XdnaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/AceIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/_twoBitIO.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PirIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SwissIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SffIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PhdIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AceIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/IgIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TabIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/PdbIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/AbiIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/NibIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/GckIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/__pycache__/QualityIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/QualityIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqIO/SnapGeneIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Scanner.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Scanner.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/GenBank/__pycache__/utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene copying /<>/.pybuild/cpython3_3.10/build/Bio/UniGene/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniGene/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet copying /<>/.pybuild/cpython3_3.10/build/Bio/Alphabet/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/xpktools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/NOEtools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/xpktools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/NMR/__pycache__/NOEtools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_samtools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_bwa.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Phd.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/Ace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Phd.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Sequencing/__pycache__/Ace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/SCOPData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/IUPACData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/CodonTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/SCOPData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/IUPACData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Data/__pycache__/CodonTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlatIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hsp.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/query.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/hit.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/hit.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_model/__pycache__/query.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/__pycache__/BlatIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/.pybuild/cpython3_3.10/build/Bio/kNN.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/Graph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Pathway/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Geo/__pycache__/Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/chisq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonalignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/codonseq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonseq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/chisq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/codonalign/__pycache__/codonalignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/DisplayRepresentation.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/Distribution.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/KGML_vis.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/Comparative.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/BasicChromosome.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/KGML_vis.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Comparative.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/Distribution.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/Restriction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/PrintFormat.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/PrintFormat.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Restriction/__pycache__/Restriction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Raf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Des.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Hie.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Dom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Residues.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/Cla.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Raf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Dom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Hie.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Residues.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Cla.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SCOP/__pycache__/Des.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/KeyWList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SwissProt/__pycache__/KeyWList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application copying /<>/.pybuild/cpython3_3.10/build/Bio/Application/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Application/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/pm_fitting.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/phen_micro.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/phen_micro.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/phenotype/__pycache__/pm_fitting.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer copying /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Enzyme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/ScanProsite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prosite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/Prodoc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Enzyme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prodoc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/ExPASy/__pycache__/Prosite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/File.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JONES -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RAO -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/FENG -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/STR -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/data creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Prank.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Dialign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Mafft.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Clustalw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Muscle.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_Probcons.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_TCoffee.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Prank.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/Applications/_MSAProbs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/__pycache__/AlignInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Align/_aligners.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align copying /<>/.pybuild/cpython3_3.10/build/Bio/_utils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Map/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/REST.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/__pycache__/REST.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CheckSum.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/lcc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsage.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParamData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/MeltingTemp.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/lcc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqUtils/ProtParam.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline copying /<>/.pybuild/cpython3_3.10/build/Bio/Medline/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Medline/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/MatrixInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/FreqTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/FreqTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Trees.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/StandardData.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Trees.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nexus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/StandardData.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/__pycache__/Nodes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Nexus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus copying /<>/.pybuild/cpython3_3.10/build/Bio/Nexus/Nodes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/GOA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/UniProt/__pycache__/GOA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/MaxEntropy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/clustermodule.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Cluster/cluster.h -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster copying /<>/.pybuild/cpython3_3.10/build/Bio/SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/Applications.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/PrimerSearch.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/Primer3.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Applications.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/Primer3.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isodia.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/link.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isobox.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/list.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/para.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/math.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isotech.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isopub.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/display.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/common.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/chars.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/notat.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/section.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/references.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/modules.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/phrase.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isonum.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/format.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/DTDs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/XSDs copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/Parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Entrez/__pycache__/Parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/NexusIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MauveIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MsfIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/Interfaces.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/MafIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MauveIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/Interfaces.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MsfIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/MafIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/__pycache__/NexusIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/AlignIO/StockholmIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO copying /<>/.pybuild/cpython3_3.10/build/Bio/NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/dnal.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/psw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/dnal.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Wise/__pycache__/psw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS copying /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/TogoWS/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/alignace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/db.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/jaspar/__pycache__/db.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/transfac.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/clusterbuster.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/_xxmotif.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/mast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/minimal.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/xms.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/meme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/pfm.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/xms.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/matrix.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/pfm.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/thresholds.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/transfac.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/mast.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/alignace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/clusterbuster.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/meme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/__pycache__/minimal.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/thresholds.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/motifs/matrix.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs copying /<>/.pybuild/cpython3_3.10/build/Bio/cpairwise2module.c -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/Trainer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/Utilities.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/DynamicProgramming.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Trainer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/Utilities.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/HMM/__pycache__/MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Seq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio copying /<>/.pybuild/cpython3_3.10/build/Bio/bgzf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass copying /<>/.pybuild/cpython3_3.10/build/Bio/Compass/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/Compass/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqFeature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/File.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/MaxEntropy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/SeqRecord.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/NaiveBayes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/kNN.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/bgzf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/pairwise2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/_utils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/Seq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/__pycache__/LogisticRegression.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/EasyController.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/FileParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/Controller.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Bio/PopGen/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib copying /<>/.pybuild/cpython3_3.10/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.cache/matplotlib creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.config creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.config/matplotlib creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/methods creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/plugins/linux creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/mcoffee creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/home/.t_coffee/cache creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__init__.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/BioSeq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/DBUtils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/Loader.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL copying /<>/.pybuild/cpython3_3.10/build/BioSQL/BioSeqDatabase.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/__init__.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/DBUtils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/Loader.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/BioSQL/__pycache__/BioSeqDatabase.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__pycache__ creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_wait.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_empty.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_actin.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/wnts.xml.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_disco.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_pcr.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_short_result.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mirna.tab -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/mock_orchid.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blast copying /<>/.pybuild/cpython3_3.10/build/Tests/common_BioSQL_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v4_example.CEL -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/Affy/affy_v3_example.CEL -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Affy copying /<>/.pybuild/cpython3_3.10/build/Tests/test_geo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.long.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.bigendian.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/TwoBit/sequence.littleendian.2bit -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TwoBit copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/run_tests.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Miller_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.asa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1MOM_min.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/disordered.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1LCD.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2n0n_M1.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4Q9R_min.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.xyzr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.dssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/3JQH.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG_noheader.dssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/alignment_file.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2OFG.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2BEG.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/d256ba_.ent -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A8O.rsa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1SSU_mod.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4ZHL.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/header.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/ions.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/2XHE.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/a_structure.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/occupancy.pdb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/lib_10_z_5.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Wilke_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/Sander_RASA.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/4CUP.mmtf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1AS5.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/PDB/1A7G.cif -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PDB copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_networkx.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_QualityIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_cellosaurus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phenotype_fit.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_NACCESS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/requires_wise.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Xdna.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Mafft_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_seq.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/pairwise2_testCases.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Nexus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KeyWList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Ace.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqUtils.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_version.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/GU949562.1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/blank_seq.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NT_019265.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/dbsource_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/1MRR_A.gp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/gbvrl1_start.seq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/tsa_acropora.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/arab1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/empty_accession.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.ffn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/one_of.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.tsv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/negative_location.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_product.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_000932.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/no_origin_no_end.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/protein_refseq2.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/noref.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/KF527485.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/pBAD30.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NC_005816.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/extra_keywords.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/iro.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/DS830848.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/origin_line.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/no_end_marker.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/HM138502.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/pri1.gb -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/GenBank/EU851978_output.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GenBank copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NaiveBayes.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/out.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SffIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsGeneral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBI_BLAST_tools.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Mdm_partial.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Hs.2.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/UniGene/Eca.1.2425.data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniGene copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Cluster.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/temp horses.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/cw02.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/promals3d.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/odd_consensus.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/hedgehog.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/Clustalw/protein.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Clustalw copying /<>/.pybuild/cpython3_3.10/build/Tests/test_kNN.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.10/build/Tests/NMR/out_example.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR copying /<>/.pybuild/cpython3_3.10/build/Tests/NMR/noed.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NMR creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_odd_littleendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/Nib/test_even_bigendian.nib -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nib copying /<>/.pybuild/cpython3_3.10/build/Tests/seq_tests_common.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_AbiIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_UniProt_GOA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KEGG.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/greek.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/paired.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Roche copying /<>/.pybuild/cpython3_3.10/build/Tests/test_QCPSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsDistribution.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/biosql.ini.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/common_BioSQL.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/horses.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/sequential2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/random.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/hennigian.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/interlaced.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/Phylip/reference_dna2.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phylip copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsBitmaps.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsa2TYIxt copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_write.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_SMCRA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TogoWS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_features.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqRecord.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/requires_internet.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_MauveIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_write.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_PdbIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_vectors.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/msf/W_prot.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/msf/DOA_prot.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/msf copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phyml_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PQR.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Polypeptide.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_translate.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Scop.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_MafIO_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBITextParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_align.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Compass.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM700.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSE16.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM691.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_platform.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_series.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_family.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM804.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/soft_ex_dual.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo copying /<>/.pybuild/cpython3_3.10/build/Tests/Geo/GSM645.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Geo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro1.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/drosophilla.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl2.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro3.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro2.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl3.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_nucl.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl5.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/adh.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro4.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl4.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/pro5.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/nucl1.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/codonalign/egfr_pro.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/codonalign copying /<>/.pybuild/cpython3_3.10/build/Tests/test_align_substitution_matrices.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_original.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.eps -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigils.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_original.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/line_graph.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/spiral_test.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/organism.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_transparency.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/square_test.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map03070_colors.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/random_organism.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_region_linear.svg -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/simple_bar.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/map01100_widths.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/labels_default.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_1.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/scatter_test_7.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/Graphics/multi_bar.pdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Graphics copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ClustalOmega_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_UniGene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TreeConstruction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_phenotype.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_CDAO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_CAPS.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/tmpdirprankmsaSrNY0x creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.10/build/Tests/PQR/1A80.pqr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PQR copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Hie.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/testDom.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP/scopseq-test copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/raftest.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP copying /<>/.pybuild/cpython3_3.10/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SCOP creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/Meta8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta9.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/MetaTool/meta2.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MetaTool copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_baseml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Insdc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_EmbossPrimer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_File.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Enzyme.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ExPASy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_TCoffee_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-e.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/sample-d.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SnapGene copying /<>/.pybuild/cpython3_3.10/build/Tests/biosql.ini.appveyor -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/xx_after_co.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/epo_prt_selection.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/Human_contigs.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/U87107.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/AE017046.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/SC10H5.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/location_wrap.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/101ma_no_coords.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited2.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/TRBG361.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/patents.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/AAA03323.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/embl_with_0_line.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DS830848.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/A04195.imgt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/RepBase23.02.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/EMBL/DD231055_edited.embl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/EMBL copying /<>/.pybuild/cpython3_3.10/build/Tests/.coveragerc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_codeml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Dom.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SeqXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/output.best.fas -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Disordered.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_StructureAlignment.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer copying /<>/.pybuild/cpython3_3.10/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Hmmer creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp015 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/O23729.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp008 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0A186.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/R5HY77.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/keywlist2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp010 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.rdf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/F2CXE6.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp012 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp007 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P97881.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.gff -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P60137.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P0CK95.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp013 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/P84001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/uni001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/Q13639.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp009 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.list -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/H2CNN8.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp016 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp006 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/multi_ex.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp005 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/SwissProt/sp011 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SwissProt copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIFParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_EmbossIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.10/build/Tests/ExtendedPhylip/primates.phyx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/ExtendedPhylip copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/BioSQL/cor6_6.db -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BioSQL copying /<>/.pybuild/cpython3_3.10/build/Tests/test_motifs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_FastaIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_Gck.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_prosite.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Consensus.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBI_qblast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ColorSpiral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Prank_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_graphics_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Entrez_parser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KEGG_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_NibIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics copying /<>/.pybuild/cpython3_3.10/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/IntelliGenetics creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/Stockholm/simple.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/Stockholm/funny.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Stockholm copying /<>/.pybuild/cpython3_3.10/build/Tests/test_HMMGeneral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Cla.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/characters.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/nexml.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/phenoscape.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/taxa.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_types.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/edgelabels.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/meta_taxa.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/trees-uris.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/tolweb.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/trees.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/timetree.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/sets.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML copying /<>/.pybuild/cpython3_3.10/build/Tests/NeXML/treebase-record.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeXML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/BadPlate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/Plate_2.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/phenotype/SmallPlate_2.json -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/phenotype copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001422.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/multi.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802lc.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF copying /<>/.pybuild/cpython3_3.10/build/Tests/GFF/NC_001802x.fna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/GFF creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/elderberry.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/rosemary.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output016.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/loveliesbleeding.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/tc_out.msf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/dups.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output011.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/fa01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/flowers.pro.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/aster_no_wrap.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f002 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/rose.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/phlox.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/wisteria.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output005.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/aster.pro -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output007.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output012.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output013.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output001.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output009.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output006.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/lupine.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/centaurea.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output015.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output010.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output002.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output014.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output004.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output008.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/lavender.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/output003.m10 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/f003 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta copying /<>/.pybuild/cpython3_3.10/build/Tests/Fasta/sweetpea.nu -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Fasta creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_35_002.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_004.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_005.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_002.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_005.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_001.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_001.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_003.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_001.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/mirna.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_002.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/pslx_34_004.pslx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_35_002.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/Blat/psl_34_003.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Blat copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_fasta_m10.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GenomeDiagram.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Medline.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_bgzf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/search_tests_common.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_KGML_nographics.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Clustalw_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Application.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignInfo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Probcons_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/hg38.chrom.sizes -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/bsubtilis.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/cow.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/cow.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/pig.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/ecoli.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/Align/pig.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Align copying /<>/.pybuild/cpython3_3.10/build/Tests/output.best.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_convert.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/B_nuc.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/DMA_nuc.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/Cw_prot.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/DMB_prot.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/NBRF/clustalw.pir -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NBRF copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_legacy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise_aligner.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Exposure.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.irregular -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko01100.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00253.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.new -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/enzyme.4letter -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko03070.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/compound.irregular -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/gene.sample -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/ko00010.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map01100.png -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map00950.rea -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/KEGG/map03070.png -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/KEGG copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Residues.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result3.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline copying /<>/.pybuild/cpython3_3.10/build/Tests/Medline/pubmed_result2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Medline creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan copying /<>/.pybuild/cpython3_3.10/build/Tests/InterProScan/test_001.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/InterProScan creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-a.xdna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-b.xdna -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/Xdna/sample-c.xprt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Xdna copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Affy.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_motifs_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_EMBL_unittest.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/bt001 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/seqs.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/Registry/EDD_RAT.dat -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Registry copying /<>/.pybuild/cpython3_3.10/build/Tests/test_ProtParam.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.10/build/Tests/CDAO/test.cdao -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CDAO copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.10/build/Tests/Gck/artificial.gck -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Gck copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_internal_coords.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_index.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Wise.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/aaDistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_freq.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/redAADistrib.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat copying /<>/.pybuild/cpython3_3.10/build/Tests/SubsMat/protein_count.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SubsMat creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/test.new -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/bats.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/codonposset.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/int_node_labels.nwk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/Nexus/test_Nexus_input.nex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Nexus copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_DSSP.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Seq_objs.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_MarkovModel.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NCBIXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_KDTree.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_human_sample.gpi -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/UniProt/goa_yeast.gaf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/UniProt copying /<>/.pybuild/cpython3_3.10/build/Tests/test_samtools_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.10/build/Tests/Cluster/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster copying /<>/.pybuild/cpython3_3.10/build/Tests/Cluster/cyano.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cluster creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/global_species_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/rna_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/dna_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/corrupt_example2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/SeqXML/protein_example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SeqXML copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Superimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_RCSBFormats.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Cellosaurus copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Pathway.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.10/build/Tests/FSSP/1cnv.fssp -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/FSSP copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_TwoBitIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/needle_asis.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/water2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/needle.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_reverse.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_simple.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/water.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/NirK_full.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/short.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/no_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/matcher_pair.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/cds_forward.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/alignret.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/bac_find.psearch -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss copying /<>/.pybuild/cpython3_3.10/build/Tests/Emboss/internal_oligo.primer3 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Emboss creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA copying /<>/.pybuild/cpython3_3.10/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/BWA creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Exonerate copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_SASA.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.10/build/Tests/Saf/saf1.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Saf copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Chi2.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/enolase.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/NeuralNetwork/repeat.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/NeuralNetwork copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Restriction.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/ncbi_mim.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary9.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/journals.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/biosample.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed3.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/protein.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/epost3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink8.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed4.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/egquery2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/espell.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/efetch_schemas.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/taxonomy.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/pubmed7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/elink5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary5.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch7.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/einfo3.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esearch6.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/esummary1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/Entrez/nucleotide1.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Entrez copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqFeature.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Des.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/crei.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/cac81.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/taqi.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/foki.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/pvuii.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase copying /<>/.pybuild/cpython3_3.10/build/Tests/Rebase/bamii.htm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Rebase creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/tricky.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_tab.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.qual -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_short_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/zero_length.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_long_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_space.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_example.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_diff_ids.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_null.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_vtab.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_spaces.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example_dos.fastq.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/example.fastq.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_faked.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_escape.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_del.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_double_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/sanger_93.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_tabs.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_no_qual.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality copying /<>/.pybuild/cpython3_3.10/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Quality creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple_short.xmfa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/Mauve/simple.xmfa.backbone -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Mauve copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Fasttree_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Dialign_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.10/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/CodonUsage copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PAML_yn00.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GenBank.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phd.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/contig1.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/seq.cap.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace copying /<>/.pybuild/cpython3_3.10/build/Tests/Ace/consed_sample.ace -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Ace creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Wise copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_PDBParser.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/empty.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/310.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/3100.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/test.fsa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/no_smpl1.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/fake.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/3730.ab1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/Abi/test_data -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Abi copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDBList.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SwissProt.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_NMR.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_tab.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_LogisticRegression.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_FragmentMapper.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/MA0056.1.transfac -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/transfac.dat -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/fourrows.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/SRF.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/REB1.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/Arnt.sites -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/fourcolumns.pfm -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/minimal_test.meme -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/alignace.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/clusterbuster.pfm.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/abdb.xms -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/motifs copying /<>/.pybuild/cpython3_3.10/build/Tests/test_codonalign.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_GraphicsChromosome.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Muscle_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_ClustalIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Blast_Record.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/test.log -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/strict_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/msa.phy -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/majority_ref.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/pars3.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/upgma.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/adam_refs.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/nj_min.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/TreeConstruction/trees.tre -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/TreeConstruction copying /<>/.pybuild/cpython3_3.10/build/Tests/test_CodonTable.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_prodoc.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/length_coords_mismatch.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/cnksr3.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/bug2453.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/corrupt.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_test.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/wrong_version.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/unfinished.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/humor.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/bundle_without_target.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/MAF/invalid.idx -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/MAF copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_AlignIO_PhylipIO.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00546.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00159.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00165.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00107.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite/Doc copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00432.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/Prosite/ps00488.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Prosite copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_NeXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Uniprot.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Tutorial.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd_454 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/Phd/phd_solexa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Phd copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_parse_pdb_header.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PhyloXML.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/bad_results.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/yn00 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nparK creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/model creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/nhomo creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/lysin.trees -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/species.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Trees/bad.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Trees copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/gen_results.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/alignment.phylip -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/longnames.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Alignments creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/species.tree -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/bad2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/baseml creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files/codeml copying /<>/.pybuild/cpython3_3.10/build/Tests/PAML/Control_files/yn00.ctl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/Control_files creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_refresh.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam1_sorted.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/sam2.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2_sorted.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/readme.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/bam2.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.fa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.bam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1_header.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/ex1.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/SamBam/sam1.sam -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/SamBam copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SubsMat.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Emboss.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BWA_tool.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.10/build/Tests/Compass/comtest1 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass copying /<>/.pybuild/cpython3_3.10/build/Tests/Compass/comtest2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Compass creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/valine.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/proline.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/lactate.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/Enzymes/lipoprotein.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/Enzymes copying /<>/.pybuild/cpython3_3.10/build/Tests/test_Phylo_matplotlib.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_psw.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_HMMCasino.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BWA_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_aligner.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phd.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Wise.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Scop.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_psw.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBIXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prosite.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Application.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PQR.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_features.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PhyloXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenBank.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_legacy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMCasino.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ProtParam.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Restriction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Cluster.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Des.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_samtools_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/seq_tests_common.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TogoWS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Probcons_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_codonalign.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_cellosaurus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_RCSBFormats.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Enzyme.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_LogisticRegression.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SffIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqFeature.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Fasttree_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsGeneral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_yn00.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Prank_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_nographics.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_CDAO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ExPASy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Exposure.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_QCPSuperimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_parser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_prodoc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TreeConstruction.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_NeXML.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GenomeDiagram.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Nexus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_bgzf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_write.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_HMMGeneral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignInfo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniProt_GOA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_internal_coords.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_vectors.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_internet.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_DSSP.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Residues.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MafIO_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SwissProt.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EMBL_unittest.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Pathway.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align_substitution_matrices.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_File.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Astral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_align.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phyml_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Affy.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqRecord.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2_no_C.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_UniGene.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SubsMat.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Gck.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Seq_objs.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Medline.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_translate.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Consensus.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Raf.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SVDSuperimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ColorSpiral.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Ace.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SMCRA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CAPS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Dice.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Dialign_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Entrez_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NMR.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqUtils.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Muscle_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Hie.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Tutorial.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_geo.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/search_tests_common.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Clustalw_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_NACCESS.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KGML_graphics.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_seq.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_KDTree.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_pairwise2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/common_BioSQL_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KEGG.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Compass.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBITextParser.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_model.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/pairwise2_testCases.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_motifs_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsChromosome.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_SASA.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_KeyWList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_TCoffee_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDBList.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Dom.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_phenotype_fit.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Superimposer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_write.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Emboss.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NaiveBayes.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_PDBIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Chi2.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Blast_Record.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_AlignIO_convert.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_qblast.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_GraphicsDistribution.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_kNN.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Mafft_tool.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Phylo_networkx.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_MarkovModel.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_codeml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SCOP_Cla.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PAML_baseml.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/requires_wise.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_CodonTable.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_EmbossPrimer.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Disordered.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/__pycache__/test_Uniprot.cpython-310.pyc -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/__pycache__ copying /<>/.pybuild/cpython3_3.10/build/Tests/test_PDB_Dice.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise2_no_C.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_pairwise_alignment_map.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/README -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c2space.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo3.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/big.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c3line.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/haplo2.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c2line.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/PopGen/c3space.gen -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PopGen copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Raf.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SCOP_Astral.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SVDSuperimposer.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/README.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/HHsuite/allx.hhr -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/HHsuite copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SearchIO_model.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests copying /<>/.pybuild/cpython3_3.10/build/Tests/test_SeqIO_SnapGene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/distribution.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/bcl_2.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/apaf.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/example.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML copying /<>/.pybuild/cpython3_3.10/build/Tests/PhyloXML/made_up.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PhyloXML creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_motifs.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seqio.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phylo.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_entrez.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_pdb.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_contributing.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_searchio.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cluster.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_introduction.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_graphics.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_blast.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_popgen.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_learning.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_appendix.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_align.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_advanced.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_testing.tex -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial copying /<>/.pybuild/cpython3_3.10/build/Doc/Tutorial/chapter_kegg.aux -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/Tutorial creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.aln -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/fasta_iterator.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.gz -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/beta.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.dnd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/my_blast.xml -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/fasta_dictionary.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples creating /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/nmr/noed.xpk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/nmr/simplepredict.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/clustal_run.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/simple.dnd -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/Plates.csv -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/my_blat.psl -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ec_5.4.2.2.txt -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ACT_example.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/PF05371_seed.sth -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/www_blast.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/swissprot.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/alpha.faa -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/m_cold.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/opuntia.fasta -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/ls_orchid.gbk -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples copying /<>/.pybuild/cpython3_3.10/build/Doc/examples/getgene.py -> /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Blast/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_io.py to _io.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Residue.py to Residue.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SASA.py to SASA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/vectors.py to vectors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Chain.py to Chain.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Dice.py to Dice.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Selection.py to Selection.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Entity.py to Entity.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Atom.py to Atom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Model.py to Model.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Structure.py to Structure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/pairwise2.py to pairwise2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/utils.py to utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/GenBank/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/_index.py to _index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/kNN.py to kNN.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Geo/Record.py to Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Des.py to Des.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Application/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/File.py to File.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/_utils.py to _utils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/REST.py to REST.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Medline/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/dnal.py to dnal.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Wise/psw.py to psw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/alignace.py to alignace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/transfac.py to transfac.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/mast.py to mast.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/minimal.py to minimal.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/xms.py to xms.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/meme.py to meme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/pfm.py to pfm.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/motifs/matrix.py to matrix.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Seq.py to Seq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/bgzf.py to bgzf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/Compass/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/Loader.py to Loader.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_geo.py to test_geo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/run_tests.py to run_tests.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_wise.py to requires_wise.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_seq.py to test_seq.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Ace.py to test_Ace.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_kNN.py to test_kNN.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/requires_internet.py to requires_internet.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PQR.py to test_PQR.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_translate.py to test_translate.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align.py to test_align.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Compass.py to test_Compass.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_File.py to test_File.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs.py to test_motifs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prosite.py to test_prosite.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Medline.py to test_Medline.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Application.py to test_Application.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Affy.py to test_Affy.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Wise.py to test_Wise.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phd.py to test_Phd.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_NMR.py to test_NMR.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_psw.py to test_psw.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-310.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.10/dist-packages/Doc/examples/getgene.py to getgene.cpython-310.pyc running install_egg_info Copying biopython.egg-info to /<>/debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.20.0), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>' dh_install -a -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.10/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.10/dist-packages/Bio debian/tmp/usr/lib/python3.10/dist-packages/biopython-1.79.egg-info debian/python3-biopython//usr/lib/python3.10/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/.debhelper/generated/python3-biopython-sql dh_installdocs -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 5.20220215 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.10 (default=3.10) D: dh_python3 debhelper:141: skipping package: python-biopython-doc D: dh_python3 debhelper:169: source=python-biopython, binary packages=['python3-biopython'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:52: moving files from debian/python3-biopython/usr/lib/python3.10/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:399: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.79.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.10')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:172: trying to find dependency for numpy (python=None) D: dh_python3 depends:281: D={'python3-numpy', 'python3 (>= 3.10~)', 'python3:any', 'python3 (<< 3.11)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-biopython chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/<>' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/powerpc64le-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/powerpc64le-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5a2181ce1c68f3126ee843b001b393a8f0a3ccae install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/2181ce1c68f3126ee843b001b393a8f0a3ccae.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/2181ce1c68f3126ee843b001b393a8f0a3ccae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripzQIUYe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripzQIUYe cat '/tmp/5MNHluLw7D/stripzQIUYe' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripzQIUYe debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/2181ce1c68f3126ee843b001b393a8f0a3ccae.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyCG9P5q chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyCG9P5q cat '/tmp/5MNHluLw7D/objcopyCG9P5q' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyCG9P5q debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b12eb63d5f6652588c874bf483bb5b1f53034d96 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/2eb63d5f6652588c874bf483bb5b1f53034d96.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/2eb63d5f6652588c874bf483bb5b1f53034d96.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripoysZeR debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripoysZeR cat '/tmp/5MNHluLw7D/stripoysZeR' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripoysZeR debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b1/2eb63d5f6652588c874bf483bb5b1f53034d96.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyay_Blx chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyay_Blx cat '/tmp/5MNHluLw7D/objcopyay_Blx' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyay_Blx debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e7dd1a36ea892b6e05a57daee613c58030f17c78 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e7/dd1a36ea892b6e05a57daee613c58030f17c78.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e7/dd1a36ea892b6e05a57daee613c58030f17c78.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripGrqzYG debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripGrqzYG cat '/tmp/5MNHluLw7D/stripGrqzYG' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripGrqzYG debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e7/dd1a36ea892b6e05a57daee613c58030f17c78.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopy1QNcc3 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopy1QNcc3 cat '/tmp/5MNHluLw7D/objcopy1QNcc3' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopy1QNcc3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9ead39da83cdc758e4afd6e814d12e174ecefa1e install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/ad39da83cdc758e4afd6e814d12e174ecefa1e.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/ad39da83cdc758e4afd6e814d12e174ecefa1e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripkWFM1S debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripkWFM1S cat '/tmp/5MNHluLw7D/stripkWFM1S' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripkWFM1S debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/9e/ad39da83cdc758e4afd6e814d12e174ecefa1e.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyTdkTAC chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyTdkTAC cat '/tmp/5MNHluLw7D/objcopyTdkTAC' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyTdkTAC debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a13a81f216f830d29e7c0e430a07e20dbae5a1c6 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a1/3a81f216f830d29e7c0e430a07e20dbae5a1c6.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a1/3a81f216f830d29e7c0e430a07e20dbae5a1c6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/strippfZsLA debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/strippfZsLA cat '/tmp/5MNHluLw7D/strippfZsLA' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/strippfZsLA debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a1/3a81f216f830d29e7c0e430a07e20dbae5a1c6.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopy4MT3pp chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopy4MT3pp cat '/tmp/5MNHluLw7D/objcopy4MT3pp' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopy4MT3pp debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 df17446706a9010488eafa118610db3573054989 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/17446706a9010488eafa118610db3573054989.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/17446706a9010488eafa118610db3573054989.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/strip7OXGCC debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/strip7OXGCC cat '/tmp/5MNHluLw7D/strip7OXGCC' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/strip7OXGCC debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/17446706a9010488eafa118610db3573054989.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyUuy_zF chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyUuy_zF cat '/tmp/5MNHluLw7D/objcopyUuy_zF' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyUuy_zF debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2f13560a15fe13f1cb1a2e075f03e5a4a3ffaf70 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2f/13560a15fe13f1cb1a2e075f03e5a4a3ffaf70.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2f/13560a15fe13f1cb1a2e075f03e5a4a3ffaf70.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripDUeyCZ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripDUeyCZ cat '/tmp/5MNHluLw7D/stripDUeyCZ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripDUeyCZ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/2f/13560a15fe13f1cb1a2e075f03e5a4a3ffaf70.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyMFLvav chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyMFLvav cat '/tmp/5MNHluLw7D/objcopyMFLvav' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyMFLvav debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.79\+dfsg-2build1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 10de9dbd8a04e8d818413962a373aeec7d802fbe install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/de9dbd8a04e8d818413962a373aeec7d802fbe.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/de9dbd8a04e8d818413962a373aeec7d802fbe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/5MNHluLw7D/stripJBWKUd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/stripJBWKUd cat '/tmp/5MNHluLw7D/stripJBWKUd' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/stripJBWKUd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/10/de9dbd8a04e8d818413962a373aeec7d802fbe.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyfLIDK3 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so /tmp/5MNHluLw7D/objcopyfLIDK3 cat '/tmp/5MNHluLw7D/objcopyfLIDK3' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so' chmod --reference /tmp/5MNHluLw7D/objcopyfLIDK3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/powerpc64le-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-310-powerpc64le-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-310-powerpc64le-linux-gnu.so dh_installdeb -a -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=10de9dbd8a04e8d818413962a373aeec7d802fbe 2f13560a15fe13f1cb1a2e075f03e5a4a3ffaf70 5a2181ce1c68f3126ee843b001b393a8f0a3ccae 9ead39da83cdc758e4afd6e814d12e174ecefa1e a13a81f216f830d29e7c0e430a07e20dbae5a1c6 b12eb63d5f6652588c874bf483bb5b1f53034d96 df17446706a9010488eafa118610db3573054989 e7dd1a36ea892b6e05a57daee613c58030f17c78" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. install -d debian/.debhelper/scratch-space/build-python3-biopython dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Truncating usr/share/doc/python3-biopython/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.79+dfsg-2build1_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.deb'. Renaming python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.deb to python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.79\+dfsg-2build1_ppc64el.deb ../python3-biopython-dbgsym_1.79\+dfsg-2build1_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../python-biopython_1.79+dfsg-2build1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../python-biopython_1.79+dfsg-2build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-03-17T09:08:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.79+dfsg-2build1_ppc64el.changes: --------------------------------------------------- Format: 1.8 Date: Wed, 16 Mar 2022 21:45:07 +0000 Source: python-biopython Binary: python3-biopython Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.79+dfsg-2build1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: python3-biopython - Python3 library for bioinformatics Changes: python-biopython (1.79+dfsg-2build1) jammy; urgency=medium . * No-change rebuild with Python 3.10 only Checksums-Sha1: ac04b534a5a710e10734459e60a5685d5971700d 13284 python-biopython_1.79+dfsg-2build1_ppc64el.buildinfo 1d19752a7a0f16e4cd07fb9b9b88f9937e538d15 326252 python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.ddeb 7f3bd5c0ccd22a1a62ddbcc051e40e43e0b26034 1498848 python3-biopython_1.79+dfsg-2build1_ppc64el.deb Checksums-Sha256: 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+------------------------------------------------------------------------------+ Format: 1.0 Source: python-biopython Binary: python3-biopython python3-biopython-dbgsym Architecture: ppc64el Version: 1.79+dfsg-2build1 Checksums-Md5: 4120eb6e6750a61223d478cb2042d77a 326252 python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.ddeb b6e93b474c6306986247a5b955bbef00 1498848 python3-biopython_1.79+dfsg-2build1_ppc64el.deb Checksums-Sha1: 1d19752a7a0f16e4cd07fb9b9b88f9937e538d15 326252 python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.ddeb 7f3bd5c0ccd22a1a62ddbcc051e40e43e0b26034 1498848 python3-biopython_1.79+dfsg-2build1_ppc64el.deb Checksums-Sha256: 2546a9bd464df02601e666981cabc4a83af55ca5a84029f5aa3e06922ea6b86e 326252 python3-biopython-dbgsym_1.79+dfsg-2build1_ppc64el.ddeb b5155fd867e5fa62599a222b20cbc06a59fb281b5ea84c0cadb52172e2605b54 1498848 python3-biopython_1.79+dfsg-2build1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Thu, 17 Mar 2022 09:08:50 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1ubuntu4), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20220109.1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-6ubuntu1), binutils (= 2.38-3ubuntu1), binutils-common (= 2.38-3ubuntu1), binutils-powerpc64le-linux-gnu (= 2.38-3ubuntu1), blt (= 2.5.3+dfsg-4.1build1), bsdextrautils (= 2.37.2-4ubuntu3), bsdutils (= 1:2.37.2-4ubuntu3), build-essential (= 12.9ubuntu2), bwa (= 0.7.17-6), bzip2 (= 1.0.8-5), clustalo (= 1.2.4-7), clustalw (= 2.1+lgpl-7), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-18ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79ubuntu1), debhelper (= 13.6ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-4), dh-autoreconf (= 20), dh-python (= 5.20220215), dh-strip-nondeterminism (= 1.13.0-1), dialign (= 2.2.1-11), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dssp (= 4.0.4-1), dwz (= 0.14-1build1), emboss (= 6.6.0+dfsg-11ubuntu1), emboss-data (= 6.6.0+dfsg-11ubuntu1), emboss-lib (= 6.6.0+dfsg-11ubuntu1), fasttree (= 2.1.11-2), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), flex (= 2.6.4-8build1), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-lmodern (= 2.004.5-6.1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-18ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-18ubuntu1), gcc-11-base (= 11.2.0-18ubuntu1), gcc-12-base (= 12-20220313-1ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), ghostscript (= 9.55.0~dfsg1-0ubuntu4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4ubuntu2), hevea (= 2.35-1build1), hostname (= 3.23ubuntu1), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1.1), libasan6 (= 11.2.0-18ubuntu1), libatomic1 (= 12-20220313-1ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1), libavahi-client3 (= 0.8-5ubuntu4), libavahi-common-data (= 0.8-5ubuntu4), libavahi-common3 (= 0.8-5ubuntu4), libbinutils (= 2.38-3ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu3), libboost-iostreams1.74.0 (= 1.74.0-14ubuntu2), libboost-program-options1.74.0 (= 1.74.0-14ubuntu2), libboost-regex1.74.0 (= 1.74.0-14ubuntu2), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.5-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build2), libcc1-0 (= 12-20220313-1ubuntu1), libcifpp-data (= 2.0.5-1build1), libcifpp2 (= 2.0.5-1build1), libcom-err2 (= 1.46.5-2ubuntu1), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-3ubuntu1), libctf0 (= 2.38-3ubuntu1), libcups2 (= 2.4.1op1-1ubuntu3), libcurl3-gnutls (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdbus-1-3 (= 1.12.20-2ubuntu3), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.6ubuntu1), libdeflate0 (= 1.10-1ubuntu1), libdpkg-perl (= 1.21.1ubuntu1), libdw1 (= 0.186-1), libelf1 (= 0.186-1), libexpat1 (= 2.4.7-1), libexpat1-dev (= 2.4.7-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.1+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-18ubuntu1), libgcc-s1 (= 12-20220313-1ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgd3 (= 2.3.0-2ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12-20220313-1ubuntu1), libglib2.0-0 (= 2.71.3-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.3-4ubuntu1), libgomp1 (= 12-20220313-1ubuntu1), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1build1), libgs9 (= 9.55.0~dfsg1-0ubuntu4), libgs9-common (= 9.55.0~dfsg1-0ubuntu4), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz0b (= 2.7.4-1ubuntu3), libhogweed6 (= 3.7.3-1build1), libhpdf-2.3.0 (= 2.3.0+dfsg-1build1), libhts3 (= 1.13+ds-2build1), libhtscodecs2 (= 1.1.1-3), libice6 (= 2:1.0.10-1build1), libicu70 (= 70.1-2), libidn12 (= 1.38-4), libidn2-0 (= 2.3.2-2), libijs-0.35 (= 0.35-15build1), libimagequant0 (= 2.17.0-1), libisl23 (= 0.24-2), libitm1 (= 12-20220313-1ubuntu1), libjbig0 (= 2.1-3.1build2), libjbig2dec0 (= 0.19-3build1), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-ui (= 1.13.1+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.13.2~dfsg-2), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkpathsea6 (= 2021.20210626.59705-1build1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu3), liblmdb0 (= 0.9.24-1build1), liblsan0 (= 12-20220313-1ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmbedcrypto7 (= 2.28.0-1), libmbedtls14 (= 2.28.0-1), libmbedx509-1 (= 2.28.0-1), libmd0 (= 1.0.4-1), libmount1 (= 2.37.2-4ubuntu3), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libmysqlclient21 (= 8.0.28-0ubuntu4), libncurses6 (= 6.3-2), libncursesw6 (= 6.3-2), libnetpbm10 (= 2:10.0-15.4), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libopenjp2-7 (= 2.4.0-6), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11ubuntu1), libpam-modules-bin (= 1.4.0-11ubuntu1), libpam-runtime (= 1.4.0-11ubuntu1), libpam0g (= 1.4.0-11ubuntu1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpdfbox-java (= 1:1.8.16-2), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.5-1), libpixman-1-0 (= 0.40.0-1build3), libpng16-16 (= 1.6.37-3build4), libpq5 (= 14.2-1), libpsl5 (= 0.21.0-1.2build1), libptexenc1 (= 2021.20210626.59705-1build1), libpython3-all-dev (= 3.10.1-0ubuntu2), libpython3-dev (= 3.10.1-0ubuntu2), libpython3-stdlib (= 3.10.1-0ubuntu2), libpython3.10 (= 3.10.3-1), libpython3.10-dev (= 3.10.3-1), libpython3.10-minimal (= 3.10.3-1), libpython3.10-stdlib (= 3.10.3-1), libpython3.9-minimal (= 3.9.10-2), libpython3.9-stdlib (= 3.9.10-2), libqhull-r8.0 (= 2020.2-4), libquadmath0 (= 12-20220313-1ubuntu1), libraqm0 (= 0.7.0-4ubuntu1), libreadline8 (= 8.1.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-3ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg2-3ubuntu1), libseccomp2 (= 2.5.3-2ubuntu1), libselinux1 (= 3.3-1build1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu3), libsqlite3-0 (= 3.37.2-2), libssh-4 (= 0.9.6-2), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-18ubuntu1), libstdc++6 (= 12-20220313-1ubuntu1), libsub-override-perl (= 0.09-2), libsynctex2 (= 2021.20210626.59705-1build1), libsystemd0 (= 249.11-0ubuntu1), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libteckit0 (= 2.5.11+ds1-1), libtexlua53 (= 2021.20210626.59705-1build1), libtiff5 (= 4.3.0-6), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-18ubuntu1), libubsan1 (= 12-20220313-1ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.11-0ubuntu1), libunistring2 (= 1.0-1), libuuid1 (= 2.37.2-4ubuntu3), libwebp7 (= 1.2.2-2), libwebpdemux2 (= 1.2.2-2), libwebpmux3 (= 1.2.2-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxi6 (= 2:1.8-1), libxml2 (= 2.9.13+dfsg-1), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1build1), libxrender1 (= 1:0.9.10-1build3), libxslt1.1 (= 1.1.34-4build1), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.4.8+dfsg-3), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.15.0-23.23), login (= 1:4.8.1-2ubuntu2), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 23), m4 (= 1.4.18-5ubuntu1), mafft (= 7.490-1), mailcap (= 3.70+nmu1ubuntu1), make (= 4.3-4.1build1), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3), media-types (= 6.0.0), mime-support (= 3.66), muscle (= 1:3.8.1551-2build1), mysql-common (= 5.8+1.0.8), ncbi-blast+ (= 2.12.0+ds-3build1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), netpbm (= 2:10.0-15.4), patch (= 2.7.6-7build1), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), phylip (= 1:3.697+dfsg-2), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.11-1), prank (= 0.0.170427+dfsg-3), preview-latex-style (= 12.2-1ubuntu1), probcons (= 1.12-14), python-matplotlib-data (= 3.5.1-2build1), python3 (= 3.10.1-0ubuntu2), python3-all (= 3.10.1-0ubuntu2), python3-all-dev (= 3.10.1-0ubuntu2), python3-appdirs (= 1.4.4-2), python3-attr (= 21.2.0-1), python3-brotli (= 1.0.9-2build4), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.1-0ubuntu2), python3-distutils (= 3.10.3-0ubuntu2), python3-fonttools (= 4.29.1-2build1), python3-fs (= 2.4.12-1), python3-isodate (= 0.6.1-1), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.10.3-0ubuntu2), python3-lxml (= 4.8.0-1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-matplotlib (= 3.5.1-2build1), python3-minimal (= 3.10.1-0ubuntu2), python3-mmtf (= 1.1.2-3), python3-mpmath (= 1.2.1-2), python3-msgpack (= 1.0.3-1), python3-mysqldb (= 1.4.6-1), python3-networkx (= 2.4-4ubuntu1), python3-numpy (= 1:1.21.5-1), python3-packaging (= 21.3-1), python3-pil (= 9.0.1-1), python3-pil.imagetk (= 9.0.1-1), python3-pkg-resources (= 59.6.0-1.2), python3-psycopg2 (= 2.9.2-1), python3-pygments (= 2.11.2+dfsg-2), python3-pyparsing (= 2.4.7-1), python3-rdflib (= 5.0.0-2), python3-renderpm (= 3.6.8-1), python3-reportlab (= 3.6.8-1), python3-reportlab-accel (= 3.6.8-1), python3-scipy (= 1.8.0-1exp2), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-3), python3-sympy (= 1.9-1), python3-tk (= 3.10.3-0ubuntu2), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.13.1+dfsg1-1), python3-unicodedata2 (= 14.0.0+ds-8), python3-unittest2 (= 1.1.0-9), python3.10 (= 3.10.3-1), python3.10-dev (= 3.10.3-1), python3.10-minimal (= 3.10.3-1), python3.9 (= 3.9.10-2), python3.9-minimal (= 3.9.10-2), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-0ubuntu5), samtools (= 1.13-4), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), t-coffee (= 13.41.0.28bdc39+dfsg-4), t1utils (= 1.41-4build1), tar (= 1.34+dfsg-1build2), tex-common (= 6.17), texlive-base (= 2021.20220204-1), texlive-binaries (= 2021.20210626.59705-1build1), texlive-fonts-recommended (= 2021.20220204-1), texlive-latex-base (= 2021.20220204-1), texlive-latex-extra (= 2021.20220204-1), texlive-latex-recommended (= 2021.20220204-1), texlive-pictures (= 2021.20220204-1), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unicode-data (= 14.0.0-1.1), util-linux (= 2.37.2-4ubuntu3), wise (= 2.4.1-23), wise-data (= 2.4.1-23), x11-common (= 1:7.7+23ubuntu1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu8), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu8) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1647467107" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-biopython_1.79+dfsg-2build1_ppc64el.deb ----------------------------------------------- new Debian package, version 2.0. size 1498848 bytes: control archive=16769 bytes. 1583 bytes, 27 lines control 57794 bytes, 613 lines md5sums 275 bytes, 12 lines * postinst #!/bin/sh 424 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython Source: python-biopython Version: 1.79+dfsg-2build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 9726 Depends: python3-numpy (>= 1:1.20.0), python3-numpy-abi9, python3 (<< 3.11), python3 (>= 3.10~), python3:any, libc6 (>= 2.17), python3-renderpm, python3-reportlab, w3-dtd-mathml Recommends: python-biopython-doc (= 1.79+dfsg-2build1), ncbi-blast+ (>= 2.10.1-3) Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, raxml, samtools, t-coffee, wise Breaks: cnvkit (<< 0.9.7-1~), ncbi-acc-download (<< 0.2.7-2~) Section: python Priority: optional Homepage: https://biopython.org Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 301592 Build-Time: 565 Distribution: jammy-proposed Host Architecture: ppc64el Install-Time: 102 Job: python-biopython_1.79+dfsg-2build1.dsc Machine Architecture: ppc64el Package: python-biopython Package-Time: 670 Source-Version: 1.79+dfsg-2build1 Space: 301592 Status: successful Version: 1.79+dfsg-2build1 -------------------------------------------------------------------------------- Finished at 2022-03-17T09:08:50Z Build needed 00:11:10, 301592k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-23249325 Scanning for processes to kill in build PACKAGEBUILD-23249325