https://launchpad.net/ubuntu/+source/python-biopython/1.78+dfsg-5ubuntu1/+build/22026614 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-029 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:04:17 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_200~495~ubuntu18.04.1 python3-lpbuildd_200~495~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 30 Aug 16:01:48 ntpdate[1785]: adjust time server 10.211.37.1 offset -0.002608 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22026614 --image-type chroot /home/buildd/filecache-default/470b94eb81e7101f5c7afd2cf17d7483b3ea9d4e Creating target for build PACKAGEBUILD-22026614 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22026614 Starting target for build PACKAGEBUILD-22026614 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22026614 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22026614 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22026614 Updating target for build PACKAGEBUILD-22026614 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 Packages [1404 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe amd64 Packages [13.1 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5464 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 Packages [268 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [81.1 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 Packages [713 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [211 kB] Fetched 22.3 MB in 3s (7999 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-11 g++-11 gcc-11 libgcc-11-dev libstdc++-11-dev The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-10 dash debconf diffutils dpkg dpkg-dev e2fsprogs findutils g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gpg gpg-agent gpgconf gpgv gzip libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-10-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libmount1 libnettle8 libnsl-dev libnsl2 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.32 libprocps8 libquadmath0 libreadline8 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mount openssl passwd perl perl-base perl-modules-5.32 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils usrmerge util-linux xz-utils zlib1g 118 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 266 MB of archives. After this operation, 495 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl-dev amd64 1.3.0-2 [66.2 kB] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt-dev amd64 1:4.4.18-4ubuntu1 [104 kB] Get:3 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6-dev amd64 2.34-0ubuntu1 [1886 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-dev-bin amd64 2.34-0ubuntu1 [20.3 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl2 amd64 1.3.0-2 [39.0 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt1 amd64 1:4.4.18-4ubuntu1 [75.6 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main amd64 linux-libc-dev amd64 5.13.0-14.14 [1217 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6 amd64 2.34-0ubuntu1 [3027 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-bin amd64 2.34-0ubuntu1 [1023 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libasan6 amd64 11.2.0-3ubuntu1 [2280 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libubsan1 amd64 11.2.0-3ubuntu1 [920 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libtsan0 amd64 11.2.0-3ubuntu1 [2259 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libquadmath0 amd64 11.2.0-3ubuntu1 [154 kB] Get:14 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 liblsan0 amd64 11.2.0-3ubuntu1 [974 kB] Get:15 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libitm1 amd64 11.2.0-3ubuntu1 [30.1 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgomp1 amd64 11.2.0-3ubuntu1 [117 kB] Get:17 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-11-base amd64 11.2.0-3ubuntu1 [20.8 kB] Get:18 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgcc-s1 amd64 11.2.0-3ubuntu1 [45.6 kB] Get:19 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcc1-0 amd64 11.2.0-3ubuntu1 [53.8 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libatomic1 amd64 11.2.0-3ubuntu1 [10.0 kB] Get:21 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libstdc++6 amd64 11.2.0-3ubuntu1 [656 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main amd64 base-files amd64 11.1ubuntu3 [60.9 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main amd64 bash amd64 5.1-3ubuntu1 [731 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main amd64 bsdutils amd64 1:2.36.1-8ubuntu1 [83.1 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg amd64 1.20.9ubuntu2 [1268 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main amd64 libperl5.32 amd64 5.32.1-3ubuntu3 [4713 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main amd64 perl amd64 5.32.1-3ubuntu3 [227 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main amd64 perl-base amd64 5.32.1-3ubuntu3 [1745 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main amd64 perl-modules-5.32 all 5.32.1-3ubuntu3 [2945 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu1 [673 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu7 [58.1 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 debconf all 1.5.77 [121 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [87.3 kB] Get:34 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 diffutils amd64 1:3.8-0ubuntu1 [205 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 findutils amd64 4.8.0-1ubuntu2 [332 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 gzip amd64 1.10-4ubuntu1 [92.9 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 login amd64 1:4.8.1-1ubuntu9 [222 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 util-linux amd64 2.36.1-8ubuntu1 [1016 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 base-passwd amd64 3.5.51 [48.5 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 sysvinit-utils amd64 2.96-7ubuntu1 [20.1 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 libgcrypt20 amd64 1.8.7-5ubuntu1 [430 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 liblz4-1 amd64 1.9.3-2 [52.9 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 liblzma5 amd64 5.2.5-2 [96.5 kB] Get:44 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 systemd-sysv amd64 248.3-1ubuntu5 [10.5 kB] Get:45 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 systemd-timesyncd amd64 248.3-1ubuntu5 [30.8 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 libapparmor1 amd64 3.0.3-0ubuntu1 [38.4 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 libaudit-common all 1:3.0-2ubuntu2 [4788 B] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 libaudit1 amd64 1:3.0-2ubuntu2 [39.8 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 libblkid1 amd64 2.36.1-8ubuntu1 [97.7 kB] Get:50 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libudev1 amd64 248.3-1ubuntu5 [77.2 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1ubuntu1 [128 kB] Get:52 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libssl1.1 amd64 1.1.1k-1ubuntu1 [1446 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 libuuid1 amd64 2.36.1-8ubuntu1 [23.3 kB] Get:54 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcryptsetup12 amd64 2:2.3.6-0ubuntu1 [213 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 libnettle8 amd64 3.7.3-1 [147 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 libhogweed6 amd64 3.7.3-1 [195 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 libidn2-0 amd64 2.3.1-1 [49.8 kB] Get:58 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgnutls30 amd64 3.7.1-5ubuntu1 [956 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 libzstd1 amd64 1.4.8+dfsg-2.1 [290 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 libkmod2 amd64 28-1ubuntu4 [45.0 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libmount1 amd64 2.36.1-8ubuntu1 [116 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libpam0g amd64 1.3.1-5ubuntu8 [59.4 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 mount amd64 2.36.1-8ubuntu1 [110 kB] Get:64 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 systemd amd64 248.3-1ubuntu5 [4402 kB] Get:65 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libsystemd0 amd64 248.3-1ubuntu5 [308 kB] Get:66 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libapt-pkg6.0 amd64 2.3.8 [901 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 gpgv amd64 2.2.20-1ubuntu4 [130 kB] Get:68 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 apt amd64 2.3.8 [1382 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu8 [42.1 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules amd64 1.3.1-5ubuntu8 [272 kB] Get:71 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 logsave amd64 1.46.3-1ubuntu2 [11.5 kB] Get:72 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libext2fs2 amd64 1.46.3-1ubuntu2 [210 kB] Get:73 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 e2fsprogs amd64 1.46.3-1ubuntu2 [588 kB] Get:74 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcom-err2 amd64 1.46.3-1ubuntu2 [10.7 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-runtime all 1.3.1-5ubuntu8 [38.7 kB] Get:76 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libpcre2-8-0 amd64 10.37-0ubuntu2 [219 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main amd64 libsmartcols1 amd64 2.36.1-8ubuntu1 [49.7 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main amd64 passwd amd64 1:4.8.1-1ubuntu9 [813 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main amd64 libk5crypto3 amd64 1.18.3-6 [85.2 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5support0 amd64 1.18.3-6 [32.1 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5-3 amd64 1.18.3-6 [354 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 libgssapi-krb5-2 amd64 1.18.3-6 [143 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main amd64 libprocps8 amd64 2:3.3.17-5ubuntu3 [35.9 kB] Get:84 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libss2 amd64 1.46.3-1ubuntu2 [12.2 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main amd64 procps amd64 2:3.3.17-5ubuntu3 [378 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main amd64 usrmerge all 25ubuntu1 [53.5 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main amd64 readline-common all 8.1-2 [54.1 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main amd64 libreadline8 amd64 8.1-2 [138 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main amd64 libsqlite3-0 amd64 3.35.5-1 [601 kB] Get:90 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 openssl amd64 1.1.1k-1ubuntu1 [651 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main amd64 xz-utils amd64 5.2.5-2 [82.0 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main amd64 advancecomp amd64 2.1-2.1ubuntu1 [170 kB] Get:93 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libctf0 amd64 2.37-2ubuntu4 [103 kB] Get:94 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libctf-nobfd0 amd64 2.37-2ubuntu4 [106 kB] Get:95 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 binutils amd64 2.37-2ubuntu4 [3196 B] Get:96 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.37-2ubuntu4 [2314 kB] Get:97 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libbinutils amd64 2.37-2ubuntu4 [655 kB] Get:98 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 binutils-common amd64 2.37-2ubuntu4 [105 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main amd64 libisl23 amd64 0.24-1 [668 kB] Get:100 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 cpp-11 amd64 11.2.0-3ubuntu1 [50.6 MB] Get:101 http://ftpmaster.internal/ubuntu impish/main amd64 g++ amd64 4:11.2.0-1ubuntu1 [1412 B] Get:102 http://ftpmaster.internal/ubuntu impish/main amd64 gcc amd64 4:11.2.0-1ubuntu1 [5112 B] Get:103 http://ftpmaster.internal/ubuntu impish/main amd64 cpp amd64 4:11.2.0-1ubuntu1 [27.7 kB] Get:104 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgcc-11-dev amd64 11.2.0-3ubuntu1 [2521 kB] Get:105 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-11 amd64 11.2.0-3ubuntu1 [59.3 MB] Get:106 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libstdc++-11-dev amd64 11.2.0-3ubuntu1 [2093 kB] Get:107 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 g++-11 amd64 11.2.0-3ubuntu1 [55.3 MB] Get:108 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg-dev all 1.20.9ubuntu2 [937 kB] Get:109 http://ftpmaster.internal/ubuntu impish/main amd64 libdpkg-perl all 1.20.9ubuntu2 [233 kB] Get:110 http://ftpmaster.internal/ubuntu impish/main amd64 lto-disabled-list all 16 [12.5 kB] Get:111 http://ftpmaster.internal/ubuntu impish/main amd64 build-essential amd64 12.9ubuntu1 [4740 B] Get:112 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 g++-10 amd64 10.3.0-8ubuntu1 [10.6 MB] Get:113 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libstdc++-10-dev amd64 10.3.0-8ubuntu1 [1863 kB] Get:114 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 gcc-10 amd64 10.3.0-8ubuntu1 [18.9 MB] Get:115 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgcc-10-dev amd64 10.3.0-8ubuntu1 [2490 kB] Get:116 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 cpp-10 amd64 10.3.0-8ubuntu1 [9341 kB] Get:117 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 gcc-10-base amd64 10.3.0-8ubuntu1 [21.0 kB] Get:118 http://ftpmaster.internal/ubuntu impish/main amd64 libassuan0 amd64 2.5.5-1 [38.4 kB] Get:119 http://ftpmaster.internal/ubuntu impish/main amd64 pinentry-curses amd64 1.1.1-1 [32.0 kB] Get:120 http://ftpmaster.internal/ubuntu impish/main amd64 gpg amd64 2.2.20-1ubuntu4 [479 kB] Get:121 http://ftpmaster.internal/ubuntu impish/main amd64 gpgconf amd64 2.2.20-1ubuntu4 [91.1 kB] Get:122 http://ftpmaster.internal/ubuntu impish/main amd64 gpg-agent amd64 2.2.20-1ubuntu4 [191 kB] Get:123 http://ftpmaster.internal/ubuntu impish/main amd64 pkgbinarymangler all 148 [32.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 266 MB in 9s (30.9 MB/s) (Reading database ... 13130 files and directories currently installed.) Preparing to unpack .../libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) over (1.3.0-0ubuntu3) ... Preparing to unpack .../libcrypt-dev_1%3a4.4.18-4ubuntu1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.18-4ubuntu1) over (1:4.4.17-1ubuntu3) ... Preparing to unpack .../libc6-dev_2.34-0ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.34-0ubuntu1) over (2.33-0ubuntu5) ... Preparing to unpack .../libc-dev-bin_2.34-0ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.34-0ubuntu1) over (2.33-0ubuntu5) ... Preparing to unpack .../libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) over (1.3.0-0ubuntu3) ... Setting up libnsl2:amd64 (1.3.0-2) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.18-4ubuntu1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.18-4ubuntu1) over (1:4.4.17-1ubuntu3) ... Setting up libcrypt1:amd64 (1:4.4.18-4ubuntu1) ... (Reading database ... 13138 files and directories currently installed.) Preparing to unpack .../linux-libc-dev_5.13.0-14.14_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.13.0-14.14) over (5.11.0-14.15) ... Preparing to unpack .../libc6_2.34-0ubuntu1_amd64.deb ... Unpacking libc6:amd64 (2.34-0ubuntu1) over (2.33-0ubuntu5) ... Setting up libc6:amd64 (2.34-0ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../libc-bin_2.34-0ubuntu1_amd64.deb ... Unpacking libc-bin (2.34-0ubuntu1) over (2.33-0ubuntu5) ... Setting up libc-bin (2.34-0ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../0-libasan6_11.2.0-3ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../1-libubsan1_11.2.0-3ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../2-libtsan0_11.2.0-3ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../3-libquadmath0_11.2.0-3ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../4-liblsan0_11.2.0-3ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../5-libitm1_11.2.0-3ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../6-libgomp1_11.2.0-3ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../7-gcc-11-base_11.2.0-3ubuntu1_amd64.deb ... Unpacking gcc-11-base:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Setting up gcc-11-base:amd64 (11.2.0-3ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-3ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Setting up libgcc-s1:amd64 (11.2.0-3ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.2.0-3ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../libatomic1_11.2.0-3ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Preparing to unpack .../libstdc++6_11.2.0-3ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (11.2.0-3ubuntu1) over (11-20210417-1ubuntu1) ... Setting up libstdc++6:amd64 (11.2.0-3ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../base-files_11.1ubuntu3_amd64.deb ... Unpacking base-files (11.1ubuntu3) over (11ubuntu18) ... Setting up base-files (11.1ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/dpkg/origins/debian ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../bash_5.1-3ubuntu1_amd64.deb ... Unpacking bash (5.1-3ubuntu1) over (5.1-2ubuntu1) ... Setting up bash (5.1-3ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-8ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.36.1-8ubuntu1) over (1:2.36.1-7ubuntu2) ... Setting up bsdutils (1:2.36.1-8ubuntu1) ... (Reading database ... 13137 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.9ubuntu2_amd64.deb ... Unpacking dpkg (1.20.9ubuntu2) over (1.20.7.1ubuntu4) ... Setting up dpkg (1.20.9ubuntu2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libperl5.32_5.32.1-3ubuntu3_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-3ubuntu3) over (5.32.1-3ubuntu2) ... Preparing to unpack .../perl_5.32.1-3ubuntu3_amd64.deb ... Unpacking perl (5.32.1-3ubuntu3) over (5.32.1-3ubuntu2) ... Preparing to unpack .../perl-base_5.32.1-3ubuntu3_amd64.deb ... Unpacking perl-base (5.32.1-3ubuntu3) over (5.32.1-3ubuntu2) ... Setting up perl-base (5.32.1-3ubuntu3) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../perl-modules-5.32_5.32.1-3ubuntu3_all.deb ... Unpacking perl-modules-5.32 (5.32.1-3ubuntu3) over (5.32.1-3ubuntu2) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.8ubuntu1_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.8ubuntu1) over (5.3.28+dfsg1-0.6ubuntu4) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.8ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2ubuntu7_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu7) over (1:1.2.11.dfsg-2ubuntu6) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu7) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../debconf_1.5.77_all.deb ... Unpacking debconf (1.5.77) over (1.5.74) ... Setting up debconf (1.5.77) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210120+802ebd4-1_amd64.deb ... Unpacking dash (0.5.11+git20210120+802ebd4-1) over (0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1) ... Setting up dash (0.5.11+git20210120+802ebd4-1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-0ubuntu1_amd64.deb ... Unpacking diffutils (1:3.8-0ubuntu1) over (1:3.7-3ubuntu1) ... Setting up diffutils (1:3.8-0ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../findutils_4.8.0-1ubuntu2_amd64.deb ... Unpacking findutils (4.8.0-1ubuntu2) over (4.8.0-1ubuntu1) ... Setting up findutils (4.8.0-1ubuntu2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../gzip_1.10-4ubuntu1_amd64.deb ... Unpacking gzip (1.10-4ubuntu1) over (1.10-2ubuntu3) ... Setting up gzip (1.10-4ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu9_amd64.deb ... Unpacking login (1:4.8.1-1ubuntu9) over (1:4.8.1-1ubuntu8) ... Setting up login (1:4.8.1-1ubuntu9) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-8ubuntu1_amd64.deb ... Unpacking util-linux (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Setting up util-linux (2.36.1-8ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.51_amd64.deb ... Unpacking base-passwd (3.5.51) over (3.5.49) ... Setting up base-passwd (3.5.51) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-7ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.96-7ubuntu1) over (2.96-6ubuntu1) ... Setting up sysvinit-utils (2.96-7ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-5ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.7-5ubuntu1) over (1.8.7-2ubuntu2) ... Setting up libgcrypt20:amd64 (1.8.7-5ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.3-2_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.3-2) over (1.9.3-1build1) ... Setting up liblz4-1:amd64 (1.9.3-2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-2) over (5.2.5-1.0build2) ... Setting up liblzma5:amd64 (5.2.5-2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../systemd-sysv_248.3-1ubuntu5_amd64.deb ... Unpacking systemd-sysv (248.3-1ubuntu5) over (247.3-3ubuntu3) ... Preparing to unpack .../systemd-timesyncd_248.3-1ubuntu5_amd64.deb ... Unpacking systemd-timesyncd (248.3-1ubuntu5) over (247.3-3ubuntu3) ... Preparing to unpack .../libapparmor1_3.0.3-0ubuntu1_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.3-0ubuntu1) over (3.0.0-0ubuntu7) ... Preparing to unpack .../libaudit-common_1%3a3.0-2ubuntu2_all.deb ... Unpacking libaudit-common (1:3.0-2ubuntu2) over (1:3.0-2ubuntu1) ... Setting up libaudit-common (1:3.0-2ubuntu2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0-2ubuntu2_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0-2ubuntu2) over (1:3.0-2ubuntu1) ... Setting up libaudit1:amd64 (1:3.0-2ubuntu2) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libblkid1_2.36.1-8ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Setting up libblkid1:amd64 (2.36.1-8ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libudev1_248.3-1ubuntu5_amd64.deb ... Unpacking libudev1:amd64 (248.3-1ubuntu5) over (247.3-3ubuntu3) ... Setting up libudev1:amd64 (248.3-1ubuntu5) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.175-2.1ubuntu1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.175-2.1ubuntu1) over (2:1.02.175-2ubuntu4) ... Preparing to unpack .../libssl1.1_1.1.1k-1ubuntu1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1k-1ubuntu1) over (1.1.1j-1ubuntu3) ... Setting up libssl1.1:amd64 (1.1.1k-1ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libuuid1_2.36.1-8ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Setting up libuuid1:amd64 (2.36.1-8ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.3.6-0ubuntu1_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.3.6-0ubuntu1) over (2:2.3.4-1ubuntu3) ... Preparing to unpack .../libnettle8_3.7.3-1_amd64.deb ... Unpacking libnettle8:amd64 (3.7.3-1) over (3.7-2.1ubuntu1) ... Setting up libnettle8:amd64 (3.7.3-1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.7.3-1_amd64.deb ... Unpacking libhogweed6:amd64 (3.7.3-1) over (3.7-2.1ubuntu1) ... Setting up libhogweed6:amd64 (3.7.3-1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.1-1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.1-1) over (2.3.0-5) ... Setting up libidn2-0:amd64 (2.3.1-1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.1-5ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.1-5ubuntu1) over (3.7.1-3ubuntu1) ... Setting up libgnutls30:amd64 (3.7.1-5ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2.1_amd64.deb ... Unpacking libzstd1:amd64 (1.4.8+dfsg-2.1) over (1.4.8+dfsg-2build2) ... Setting up libzstd1:amd64 (1.4.8+dfsg-2.1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libkmod2_28-1ubuntu4_amd64.deb ... Unpacking libkmod2:amd64 (28-1ubuntu4) over (28-1ubuntu2) ... Preparing to unpack .../libmount1_2.36.1-8ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Setting up libmount1:amd64 (2.36.1-8ubuntu1) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../libpam0g_1.3.1-5ubuntu8_amd64.deb ... Unpacking libpam0g:amd64 (1.3.1-5ubuntu8) over (1.3.1-5ubuntu6) ... Setting up libpam0g:amd64 (1.3.1-5ubuntu8) ... (Reading database ... 13142 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-8ubuntu1_amd64.deb ... Unpacking mount (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Preparing to unpack .../systemd_248.3-1ubuntu5_amd64.deb ... Unpacking systemd (248.3-1ubuntu5) over (247.3-3ubuntu3) ... Preparing to unpack .../libsystemd0_248.3-1ubuntu5_amd64.deb ... Unpacking libsystemd0:amd64 (248.3-1ubuntu5) over (247.3-3ubuntu3) ... Setting up libsystemd0:amd64 (248.3-1ubuntu5) ... (Reading database ... 13157 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.8_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.3.8) over (2.2.3) ... Setting up libapt-pkg6.0:amd64 (2.3.8) ... (Reading database ... 13157 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1ubuntu4_amd64.deb ... Unpacking gpgv (2.2.20-1ubuntu4) over (2.2.20-1ubuntu3) ... Setting up gpgv (2.2.20-1ubuntu4) ... (Reading database ... 13157 files and directories currently installed.) Preparing to unpack .../archives/apt_2.3.8_amd64.deb ... Unpacking apt (2.3.8) over (2.2.3) ... Setting up apt (2.3.8) ... (Reading database ... 13157 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu8_amd64.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu8) over (1.3.1-5ubuntu6) ... Setting up libpam-modules-bin (1.3.1-5ubuntu8) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu8_amd64.deb ... Unpacking libpam-modules:amd64 (1.3.1-5ubuntu8) over (1.3.1-5ubuntu6) ... Setting up libpam-modules:amd64 (1.3.1-5ubuntu8) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../logsave_1.46.3-1ubuntu2_amd64.deb ... Unpacking logsave (1.46.3-1ubuntu2) over (1.45.7-1ubuntu2) ... Preparing to unpack .../libext2fs2_1.46.3-1ubuntu2_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.3-1ubuntu2) over (1.45.7-1ubuntu2) ... Setting up libext2fs2:amd64 (1.46.3-1ubuntu2) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.3-1ubuntu2_amd64.deb ... Unpacking e2fsprogs (1.46.3-1ubuntu2) over (1.45.7-1ubuntu2) ... Preparing to unpack .../libcom-err2_1.46.3-1ubuntu2_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.3-1ubuntu2) over (1.45.7-1ubuntu2) ... Setting up libcom-err2:amd64 (1.46.3-1ubuntu2) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu8_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu8) over (1.3.1-5ubuntu6) ... Setting up libpam-runtime (1.3.1-5ubuntu8) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.37-0ubuntu2_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.37-0ubuntu2) over (10.36-2ubuntu5) ... Setting up libpcre2-8-0:amd64 (10.37-0ubuntu2) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-8ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-8ubuntu1) over (2.36.1-7ubuntu2) ... Setting up libsmartcols1:amd64 (2.36.1-8ubuntu1) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu9_amd64.deb ... Unpacking passwd (1:4.8.1-1ubuntu9) over (1:4.8.1-1ubuntu8) ... Setting up passwd (1:4.8.1-1ubuntu9) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.18.3-6_amd64.deb ... Unpacking libk5crypto3:amd64 (1.18.3-6) over (1.18.3-4) ... Setting up libk5crypto3:amd64 (1.18.3-6) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.18.3-6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.18.3-6) over (1.18.3-4) ... Setting up libkrb5support0:amd64 (1.18.3-6) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.18.3-6_amd64.deb ... Unpacking libkrb5-3:amd64 (1.18.3-6) over (1.18.3-4) ... Setting up libkrb5-3:amd64 (1.18.3-6) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.18.3-6_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.18.3-6) over (1.18.3-4) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-6) ... (Reading database ... 13163 files and directories currently installed.) Preparing to unpack .../00-libprocps8_2%3a3.3.17-5ubuntu3_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5ubuntu3) over (2:3.3.16-5ubuntu3) ... Preparing to unpack .../01-libss2_1.46.3-1ubuntu2_amd64.deb ... Unpacking libss2:amd64 (1.46.3-1ubuntu2) over (1.45.7-1ubuntu2) ... Preparing to unpack .../02-procps_2%3a3.3.17-5ubuntu3_amd64.deb ... Unpacking procps (2:3.3.17-5ubuntu3) over (2:3.3.16-5ubuntu3) ... Preparing to unpack .../03-usrmerge_25ubuntu1_all.deb ... Unpacking usrmerge (25ubuntu1) over (24ubuntu3) ... Preparing to unpack .../04-readline-common_8.1-2_all.deb ... Unpacking readline-common (8.1-2) over (8.1-1) ... Preparing to unpack .../05-libreadline8_8.1-2_amd64.deb ... Unpacking libreadline8:amd64 (8.1-2) over (8.1-1) ... Preparing to unpack .../06-libsqlite3-0_3.35.5-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.35.5-1) over (3.34.1-3) ... Preparing to unpack .../07-openssl_1.1.1k-1ubuntu1_amd64.deb ... Unpacking openssl (1.1.1k-1ubuntu1) over (1.1.1j-1ubuntu3) ... Preparing to unpack .../08-xz-utils_5.2.5-2_amd64.deb ... Unpacking xz-utils (5.2.5-2) over (5.2.5-1.0build2) ... Preparing to unpack .../09-advancecomp_2.1-2.1ubuntu1_amd64.deb ... Unpacking advancecomp (2.1-2.1ubuntu1) over (2.1-2.1build1) ... Preparing to unpack .../10-libctf0_2.37-2ubuntu4_amd64.deb ... Unpacking libctf0:amd64 (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../11-libctf-nobfd0_2.37-2ubuntu4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../12-binutils_2.37-2ubuntu4_amd64.deb ... Unpacking binutils (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../13-binutils-x86-64-linux-gnu_2.37-2ubuntu4_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../14-libbinutils_2.37-2ubuntu4_amd64.deb ... Unpacking libbinutils:amd64 (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../15-binutils-common_2.37-2ubuntu4_amd64.deb ... Unpacking binutils-common:amd64 (2.37-2ubuntu4) over (2.36.1-6ubuntu1) ... Preparing to unpack .../16-libisl23_0.24-1_amd64.deb ... Unpacking libisl23:amd64 (0.24-1) over (0.23-1build1) ... Selecting previously unselected package cpp-11. Preparing to unpack .../17-cpp-11_11.2.0-3ubuntu1_amd64.deb ... Unpacking cpp-11 (11.2.0-3ubuntu1) ... Preparing to unpack .../18-g++_4%3a11.2.0-1ubuntu1_amd64.deb ... Unpacking g++ (4:11.2.0-1ubuntu1) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../19-gcc_4%3a11.2.0-1ubuntu1_amd64.deb ... Unpacking gcc (4:11.2.0-1ubuntu1) over (4:10.3.0-1ubuntu1) ... Preparing to unpack .../20-cpp_4%3a11.2.0-1ubuntu1_amd64.deb ... Unpacking cpp (4:11.2.0-1ubuntu1) over (4:10.3.0-1ubuntu1) ... Selecting previously unselected package libgcc-11-dev:amd64. Preparing to unpack .../21-libgcc-11-dev_11.2.0-3ubuntu1_amd64.deb ... Unpacking libgcc-11-dev:amd64 (11.2.0-3ubuntu1) ... Selecting previously unselected package gcc-11. Preparing to unpack .../22-gcc-11_11.2.0-3ubuntu1_amd64.deb ... Unpacking gcc-11 (11.2.0-3ubuntu1) ... Selecting previously unselected package libstdc++-11-dev:amd64. Preparing to unpack .../23-libstdc++-11-dev_11.2.0-3ubuntu1_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.2.0-3ubuntu1) ... Selecting previously unselected package g++-11. Preparing to unpack .../24-g++-11_11.2.0-3ubuntu1_amd64.deb ... Unpacking g++-11 (11.2.0-3ubuntu1) ... Preparing to unpack .../25-dpkg-dev_1.20.9ubuntu2_all.deb ... Unpacking dpkg-dev (1.20.9ubuntu2) over (1.20.7.1ubuntu4) ... Preparing to unpack .../26-libdpkg-perl_1.20.9ubuntu2_all.deb ... Unpacking libdpkg-perl (1.20.9ubuntu2) over (1.20.7.1ubuntu4) ... Preparing to unpack .../27-lto-disabled-list_16_all.deb ... Unpacking lto-disabled-list (16) over (7) ... Preparing to unpack .../28-build-essential_12.9ubuntu1_amd64.deb ... Unpacking build-essential (12.9ubuntu1) over (12.8ubuntu3) ... Preparing to unpack .../29-g++-10_10.3.0-8ubuntu1_amd64.deb ... Unpacking g++-10 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../30-libstdc++-10-dev_10.3.0-8ubuntu1_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../31-gcc-10_10.3.0-8ubuntu1_amd64.deb ... Unpacking gcc-10 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../32-libgcc-10-dev_10.3.0-8ubuntu1_amd64.deb ... Unpacking libgcc-10-dev:amd64 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../33-cpp-10_10.3.0-8ubuntu1_amd64.deb ... Unpacking cpp-10 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../34-gcc-10-base_10.3.0-8ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10.3.0-8ubuntu1) over (10.3.0-1ubuntu1) ... Preparing to unpack .../35-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) over (2.5.4-1ubuntu1) ... Preparing to unpack .../36-pinentry-curses_1.1.1-1_amd64.deb ... Unpacking pinentry-curses (1.1.1-1) over (1.1.0-4build1) ... Preparing to unpack .../37-gpg_2.2.20-1ubuntu4_amd64.deb ... Unpacking gpg (2.2.20-1ubuntu4) over (2.2.20-1ubuntu3) ... Preparing to unpack .../38-gpgconf_2.2.20-1ubuntu4_amd64.deb ... Unpacking gpgconf (2.2.20-1ubuntu4) over (2.2.20-1ubuntu3) ... Preparing to unpack .../39-gpg-agent_2.2.20-1ubuntu4_amd64.deb ... Unpacking gpg-agent (2.2.20-1ubuntu4) over (2.2.20-1ubuntu3) ... Preparing to unpack .../40-pkgbinarymangler_148_all.deb ... Unpacking pkgbinarymangler (148) over (147) ... Setting up lto-disabled-list (16) ... Setting up libapparmor1:amd64 (3.0.3-0ubuntu1) ... Setting up perl-modules-5.32 (5.32.1-3ubuntu3) ... Setting up libsqlite3-0:amd64 (3.35.5-1) ... Setting up binutils-common:amd64 (2.37-2ubuntu4) ... Setting up linux-libc-dev:amd64 (5.13.0-14.14) ... Setting up libctf-nobfd0:amd64 (2.37-2ubuntu4) ... Setting up libassuan0:amd64 (2.5.5-1) ... Setting up libgomp1:amd64 (11.2.0-3ubuntu1) ... Setting up libasan6:amd64 (11.2.0-3ubuntu1) ... Setting up gcc-10-base:amd64 (10.3.0-8ubuntu1) ... Setting up xz-utils (5.2.5-2) ... Setting up libquadmath0:amd64 (11.2.0-3ubuntu1) ... Setting up libatomic1:amd64 (11.2.0-3ubuntu1) ... Setting up usrmerge (25ubuntu1) ... Setting up libss2:amd64 (1.46.3-1ubuntu2) ... Setting up libperl5.32:amd64 (5.32.1-3ubuntu3) ... Setting up logsave (1.46.3-1ubuntu2) ... Setting up libubsan1:amd64 (11.2.0-3ubuntu1) ... Setting up advancecomp (2.1-2.1ubuntu1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.175-2.1ubuntu1) ... Setting up mount (2.36.1-8ubuntu1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4ubuntu1) ... Setting up libcryptsetup12:amd64 (2:2.3.6-0ubuntu1) ... Setting up libbinutils:amd64 (2.37-2ubuntu4) ... Setting up libisl23:amd64 (0.24-1) ... Setting up libc-dev-bin (2.34-0ubuntu1) ... Setting up openssl (1.1.1k-1ubuntu1) ... Setting up readline-common (8.1-2) ... Setting up libcc1-0:amd64 (11.2.0-3ubuntu1) ... Setting up liblsan0:amd64 (11.2.0-3ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.17-5ubuntu3) ... Setting up cpp-10 (10.3.0-8ubuntu1) ... Setting up libitm1:amd64 (11.2.0-3ubuntu1) ... Setting up libkmod2:amd64 (28-1ubuntu4) ... Setting up libtsan0:amd64 (11.2.0-3ubuntu1) ... Setting up libctf0:amd64 (2.37-2ubuntu4) ... Setting up pinentry-curses (1.1.1-1) ... Setting up cpp-11 (11.2.0-3ubuntu1) ... Setting up pkgbinarymangler (148) ... Setting up libgcc-10-dev:amd64 (10.3.0-8ubuntu1) ... Setting up libreadline8:amd64 (8.1-2) ... Setting up e2fsprogs (1.46.3-1ubuntu2) ... Setting up perl (5.32.1-3ubuntu3) ... Setting up libdpkg-perl (1.20.9ubuntu2) ... Setting up libgcc-11-dev:amd64 (11.2.0-3ubuntu1) ... Setting up cpp (4:11.2.0-1ubuntu1) ... Setting up procps (2:3.3.17-5ubuntu3) ... update-alternatives: warning: alternative /usr/bin/w.procps (part of link group w) doesn't exist; removing from list of alternatives update-alternatives: warning: /etc/alternatives/w is dangling; it will be updated with best choice Setting up gpgconf (2.2.20-1ubuntu4) ... Setting up libc6-dev:amd64 (2.34-0ubuntu1) ... Setting up gpg (2.2.20-1ubuntu4) ... Setting up binutils-x86-64-linux-gnu (2.37-2ubuntu4) ... Setting up libstdc++-10-dev:amd64 (10.3.0-8ubuntu1) ... Setting up gpg-agent (2.2.20-1ubuntu4) ... Setting up binutils (2.37-2ubuntu4) ... Setting up dpkg-dev (1.20.9ubuntu2) ... Setting up gcc-10 (10.3.0-8ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.2.0-3ubuntu1) ... Setting up gcc-11 (11.2.0-3ubuntu1) ... Setting up g++-10 (10.3.0-8ubuntu1) ... Setting up g++-11 (11.2.0-3ubuntu1) ... Setting up gcc (4:11.2.0-1ubuntu1) ... Setting up g++ (4:11.2.0-1ubuntu1) ... Setting up build-essential (12.9ubuntu1) ... Setting up systemd-timesyncd (248.3-1ubuntu5) ... Installing new version of config file /etc/systemd/timesyncd.conf ... Setting up systemd (248.3-1ubuntu5) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (248.3-1ubuntu5) ... Processing triggers for libc-bin (2.34-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22026614 amd64 impish-proposed -c chroot:build-PACKAGEBUILD-22026614 --arch=amd64 --dist=impish-proposed --nolog -A python-biopython_1.78+dfsg-5ubuntu1.dsc Initiating build PACKAGEBUILD-22026614 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:04:17 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-029.buildd +==============================================================================+ | python-biopython 1.78+dfsg-5ubuntu1 (amd64) Mon, 30 Aug 2021 16:02:23 +0000 | +==============================================================================+ Package: python-biopython Version: 1.78+dfsg-5ubuntu1 Source Version: 1.78+dfsg-5ubuntu1 Distribution: impish-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22026614/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.78+dfsg-5ubuntu1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-biopython-AUAP6z/python-biopython-1.78+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-AUAP6z' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-aFdPea/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-aFdPea/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aFdPea/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-aFdPea/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aFdPea/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-aFdPea/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (163 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-aFdPea/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14312 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, ncbi-blast+ (>= 2.10.1-3), phylip, phyml, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, raxml, samtools, t-coffee, wise Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, ncbi-blast+ (>= 2.10.1-3), phylip, phyml, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, raxml, samtools, t-coffee, wise dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/<>/resolver-aFdPea/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-python-biopython-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-aFdPea/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aFdPea/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-aFdPea/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aFdPea/apt_archive ./ Sources [795 B] Get:5 copy:/<>/resolver-aFdPea/apt_archive ./ Packages [830 B] Fetched 2588 B in 0s (247 kB/s) Reading package lists... Reading package lists... Install python-biopython build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea ibverbs-providers intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libcairo2 libcbor0.6 libcifpp1 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenjp2-7 libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpdfbox-java libpipeline1 libpixman-1-0 libpmix2 libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libucx0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client phylip phyml po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mmtf python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.9 python3.9-dev python3.9-minimal raxml samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc clustalx seaview dh-make emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils pciutils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils ttf-staypuft default-mysql-server | virtual-mysql-server python3-mysqldb-dbg python-networkx-doc python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc python3-numpy-dbg python3-pytest python-pil-doc python3-pil-dbg python-psycopg2-doc python-pygments-doc python-pyparsing-doc python-rdflib-doc python3-renderpm-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc python3.9-venv python3.9-doc binfmt-support cwltool boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby xauth libmail-sendmail-perl python3-tk python3-yaml python3-olefile python3-sparqlwrapper python3-html5lib amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils bwa clustalo clustalw debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base hevea ibverbs-providers intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-iostreams1.74.0 libboost-program-options1.74.0 libbrotli1 libbsd0 libcairo2 libcbor0.6 libcifpp1 libcommons-logging-java libcommons-parent-java libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libedit2 libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfido2-1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libharfbuzz0b libhpdf-2.3.0 libhts3 libhtscodecs2 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu67 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libkpathsea6 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmd0 libmpdec3 libmysqlclient21 libnetpbm10 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libopenjp2-7 libopenmpi3 libpaper-utils libpaper1 libpciaccess0 libpdfbox-java libpipeline1 libpixman-1-0 libpmix2 libpq5 libpsl5 libpsm-infinipath1 libpsm2-2 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libucx0 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft mailcap man-db media-types mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client phylip phyml po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mmtf python3-msgpack python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.9 python3.9-dev python3.9-minimal raxml samtools sbuild-build-depends-python-biopython-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev 0 upgraded, 248 newly installed, 0 to remove and 0 not upgraded. Need to get 267 MB of archives. After this operation, 1275 MB of additional disk space will be used. Get:1 copy:/<>/resolver-aFdPea/apt_archive ./ sbuild-build-depends-python-biopython-dummy 0.invalid.0 [910 B] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9-minimal amd64 3.9.6-1 [756 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 libexpat1 amd64 2.3.0-1 [76.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main amd64 python3.9-minimal amd64 3.9.6-1 [1914 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 python3-minimal amd64 3.9.4-1 [23.7 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main amd64 mailcap all 3.69ubuntu1 [23.7 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main amd64 mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu impish/main amd64 libmpdec3 amd64 2.5.1-2 [79.8 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9-stdlib amd64 3.9.6-1 [1687 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main amd64 python3.9 amd64 3.9.6-1 [426 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3-stdlib amd64 3.9.4-1 [6984 B] Get:13 http://ftpmaster.internal/ubuntu impish/main amd64 python3 amd64 3.9.4-1 [22.2 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main amd64 bsdextrautils amd64 2.36.1-8ubuntu1 [75.4 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main amd64 groff-base amd64 1.22.4-6 [864 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 man-db amd64 2.9.4-2 [1154 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main amd64 libsigsegv2 amd64 2.13-1ubuntu1 [14.2 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main amd64 m4 amd64 1.4.18-5 [200 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main amd64 flex amd64 2.6.4-8 [298 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main amd64 poppler-data all 0.4.10-1 [1601 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main amd64 ucf all 3.0043 [56.1 kB] Get:24 http://ftpmaster.internal/ubuntu impish/universe amd64 tex-common all 6.16 [33.0 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main amd64 libmd0 amd64 1.0.3-3build1 [21.5 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main amd64 libbsd0 amd64 0.11.3-1ubuntu2 [41.1 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main amd64 libdbus-1-3 amd64 1.12.20-2ubuntu1 [179 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main amd64 libelf1 amd64 0.185-1 [47.2 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libglib2.0-0 amd64 2.68.4-1 [1423 kB] Get:30 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libicu67 amd64 67.1-7ubuntu1 [10.1 MB] Get:31 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libxml2 amd64 2.9.12+dfsg-2 [762 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 python3-pkg-resources all 52.0.0-4 [129 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic-mgc amd64 1:5.39-3 [228 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic1 amd64 1:5.39-3 [80.6 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 file amd64 1:5.39-3 [23.7 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 gettext-base amd64 0.21-4ubuntu3 [36.6 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 libcbor0.6 amd64 0.6.0-0ubuntu3 [21.7 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 libedit2 amd64 3.1-20191231-2 [87.8 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 libfido2-1 amd64 1.6.0-2 [53.4 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 liblmdb0 amd64 0.9.24-1 [44.6 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 libnuma1 amd64 2.0.14-0ubuntu2 [21.6 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 libpsl5 amd64 0.21.0-1.2 [53.5 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 libxau6 amd64 1:1.0.9-1build3 [7360 B] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu3 [10.3 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb1 amd64 1.14-3ubuntu1 [45.3 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 libx11-data all 2:1.7.2-1 [123 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 libx11-6 amd64 2:1.7.2-1 [664 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 libxext6 amd64 2:1.3.4-0ubuntu3 [28.9 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 openssh-client amd64 1:8.4p1-5ubuntu2 [759 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 autoconf all 2.69-14 [293 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 automake all 1:1.16.4-1ubuntu1 [557 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 autopoint all 0.21-4ubuntu3 [422 kB] Get:54 http://ftpmaster.internal/ubuntu impish/universe amd64 bwa amd64 0.7.17-6 [195 kB] Get:55 http://ftpmaster.internal/ubuntu impish/universe amd64 libargtable2-0 amd64 13-1.1 [14.1 kB] Get:56 http://ftpmaster.internal/ubuntu impish/universe amd64 clustalo amd64 1.2.4-7 [259 kB] Get:57 http://ftpmaster.internal/ubuntu impish/universe amd64 clustalw amd64 2.1+lgpl-7 [275 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 libtool all 2.4.6-15 [161 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 dh-autoreconf all 20 [16.1 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main amd64 dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:65 http://ftpmaster.internal/ubuntu impish/main amd64 libdw1 amd64 0.185-1 [225 kB] Get:66 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 debugedit amd64 1:5.0-0ubuntu2 [47.9 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 dwz amd64 0.14-1 [98.1 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main amd64 gettext amd64 0.21-4ubuntu3 [824 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main amd64 debhelper all 13.3.4ubuntu2 [921 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main amd64 python3-lib2to3 all 3.9.5-0ubuntu3 [76.2 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main amd64 python3-distutils all 3.9.5-0ubuntu3 [142 kB] Get:74 http://ftpmaster.internal/ubuntu impish/universe amd64 dh-python all 4.20201102ubuntu4 [92.0 kB] Get:75 http://ftpmaster.internal/ubuntu impish/universe amd64 dialign amd64 2.2.1-11 [139 kB] Get:76 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-8ubuntu3 [244 kB] Get:77 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libboost-program-options1.74.0 amd64 1.74.0-8ubuntu3 [310 kB] Get:78 http://ftpmaster.internal/ubuntu impish/universe amd64 libcifpp1 amd64 1.0.1-3 [1447 kB] Get:79 http://ftpmaster.internal/ubuntu impish/universe amd64 dssp amd64 4.0.0-2 [128 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 libbrotli1 amd64 1.0.9-2build2 [274 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 libfreetype6 amd64 2.10.4+dfsg-1build1 [348 kB] Get:82 http://ftpmaster.internal/ubuntu impish/universe amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main amd64 fontconfig-config all 2.13.1-4.2ubuntu3 [28.2 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu3 [116 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8 amd64 2.0.6-0ubuntu2 [117 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:88 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libdeflate0 amd64 1.7-2ubuntu2 [56.3 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main amd64 libwebp6 amd64 0.6.1-2.1 [183 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main amd64 libtiff5 amd64 4.3.0-1 [168 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main amd64 libgd3 amd64 2.3.0-2 [118 kB] Get:94 http://ftpmaster.internal/ubuntu impish/universe amd64 libhpdf-2.3.0 amd64 2.3.0+dfsg-1build1 [335 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main amd64 mysql-common all 5.8+1.0.5ubuntu2 [7496 B] Get:96 http://ftpmaster.internal/ubuntu impish/main amd64 libmysqlclient21 amd64 8.0.26-0ubuntu1 [1286 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1build1 [14.6 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1build1 [46.1 kB] Get:99 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libldap-2.5-0 amd64 2.5.6+dfsg-1~exp1ubuntu1 [186 kB] Get:100 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libpq5 amd64 13.4-1 [139 kB] Get:101 http://ftpmaster.internal/ubuntu impish/universe amd64 emboss-lib amd64 6.6.0+dfsg-9ubuntu1 [2885 kB] Get:102 http://ftpmaster.internal/ubuntu impish/universe amd64 emboss-data all 6.6.0+dfsg-9ubuntu1 [61.0 MB] Get:103 http://ftpmaster.internal/ubuntu impish/universe amd64 emboss amd64 6.6.0+dfsg-9ubuntu1 [980 kB] Get:104 http://ftpmaster.internal/ubuntu impish/universe amd64 fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:105 http://ftpmaster.internal/ubuntu impish/universe amd64 fonts-lyx all 2.3.6-1 [159 kB] Get:106 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgs9-common all 9.54.0~dfsg1-0ubuntu1 [747 kB] Get:107 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-common-data amd64 0.8-5ubuntu4 [24.2 kB] Get:108 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-common3 amd64 0.8-5ubuntu4 [23.8 kB] Get:109 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-client3 amd64 0.8-5ubuntu4 [28.0 kB] Get:110 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcups2 amd64 2.3.3op2-5ubuntu1 [261 kB] Get:111 http://ftpmaster.internal/ubuntu impish/main amd64 libidn11 amd64 1.33-3 [46.1 kB] Get:112 http://ftpmaster.internal/ubuntu impish/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] Get:113 http://ftpmaster.internal/ubuntu impish/main amd64 libjbig2dec0 amd64 0.19-3 [61.8 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu5 [141 kB] Get:115 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:116 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgs9 amd64 9.54.0~dfsg1-0ubuntu1 [4688 kB] Get:117 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 ghostscript amd64 9.54.0~dfsg1-0ubuntu1 [49.5 kB] Get:118 http://ftpmaster.internal/ubuntu impish/universe amd64 libnetpbm10 amd64 2:10.0-15.4 [59.1 kB] Get:119 http://ftpmaster.internal/ubuntu impish/universe amd64 netpbm amd64 2:10.0-15.4 [1007 kB] Get:120 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:121 http://ftpmaster.internal/ubuntu impish/main amd64 libkpathsea6 amd64 2020.20200327.54578-7 [57.8 kB] Get:122 http://ftpmaster.internal/ubuntu impish/main amd64 libptexenc1 amd64 2020.20200327.54578-7 [35.9 kB] Get:123 http://ftpmaster.internal/ubuntu impish/main amd64 libsynctex2 amd64 2020.20200327.54578-7 [55.3 kB] Get:124 http://ftpmaster.internal/ubuntu impish/main amd64 libtexlua53 amd64 2020.20200327.54578-7 [111 kB] Get:125 http://ftpmaster.internal/ubuntu impish/main amd64 libtexluajit2 amd64 2020.20200327.54578-7 [249 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main amd64 t1utils amd64 1.41-4 [56.0 kB] Get:127 http://ftpmaster.internal/ubuntu impish/main amd64 libpixman-1-0 amd64 0.40.0-1build2 [236 kB] Get:128 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb-render0 amd64 1.14-3ubuntu1 [14.8 kB] Get:129 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb-shm0 amd64 1.14-3ubuntu1 [5588 B] Get:130 http://ftpmaster.internal/ubuntu impish/main amd64 libxrender1 amd64 1:0.9.10-1build2 [18.5 kB] Get:131 http://ftpmaster.internal/ubuntu impish/main amd64 libcairo2 amd64 1.16.0-5ubuntu1 [589 kB] Get:132 http://ftpmaster.internal/ubuntu impish/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB] Get:133 http://ftpmaster.internal/ubuntu impish/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu1 [345 kB] Get:134 http://ftpmaster.internal/ubuntu impish/universe amd64 libteckit0 amd64 2.5.10+ds1-3 [328 kB] Get:135 http://ftpmaster.internal/ubuntu impish/main amd64 x11-common all 1:7.7+22ubuntu1 [22.3 kB] Get:136 http://ftpmaster.internal/ubuntu impish/main amd64 libice6 amd64 2:1.0.10-1 [40.2 kB] Get:137 http://ftpmaster.internal/ubuntu impish/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:138 http://ftpmaster.internal/ubuntu impish/main amd64 libxt6 amd64 1:1.2.0-1 [160 kB] Get:139 http://ftpmaster.internal/ubuntu impish/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu1 [45.8 kB] Get:140 http://ftpmaster.internal/ubuntu impish/main amd64 libxaw7 amd64 2:1.0.13-1.1 [174 kB] Get:141 http://ftpmaster.internal/ubuntu impish/main amd64 libxi6 amd64 2:1.7.10-1build2 [29.7 kB] Get:142 http://ftpmaster.internal/ubuntu impish/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] Get:143 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-binaries amd64 2020.20200327.54578-7 [9919 kB] Get:144 http://ftpmaster.internal/ubuntu impish/main amd64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:145 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-base all 2020.20210202-3 [20.7 MB] Get:146 http://ftpmaster.internal/ubuntu impish/universe amd64 hevea amd64 2.34-2build3 [1792 kB] Get:147 http://ftpmaster.internal/ubuntu impish/main amd64 libnl-3-200 amd64 3.4.0-1build2 [53.7 kB] Get:148 http://ftpmaster.internal/ubuntu impish/main amd64 libnl-route-3-200 amd64 3.4.0-1build2 [151 kB] Get:149 http://ftpmaster.internal/ubuntu impish/main amd64 libibverbs1 amd64 33.2-1ubuntu1 [57.8 kB] Get:150 http://ftpmaster.internal/ubuntu impish/main amd64 ibverbs-providers amd64 33.2-1ubuntu1 [250 kB] Get:151 http://ftpmaster.internal/ubuntu impish/universe amd64 libapache-pom-java all 18-1 [4720 B] Get:152 http://ftpmaster.internal/ubuntu impish/main amd64 libblas3 amd64 3.9.0-3ubuntu2 [199 kB] Get:153 http://ftpmaster.internal/ubuntu impish/universe amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:154 http://ftpmaster.internal/ubuntu impish/universe amd64 libcommons-logging-java all 1.2-2 [60.3 kB] Get:155 http://ftpmaster.internal/ubuntu impish/main amd64 libnghttp2-14 amd64 1.43.0-1 [72.5 kB] Get:156 http://ftpmaster.internal/ubuntu impish/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:157 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libssh-4 amd64 0.9.6-1 [185 kB] Get:158 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libcurl3-gnutls amd64 7.74.0-1.3ubuntu1 [268 kB] Get:159 http://ftpmaster.internal/ubuntu impish/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [89.4 kB] Get:160 http://ftpmaster.internal/ubuntu impish/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [7364 B] Get:161 http://ftpmaster.internal/ubuntu impish/main amd64 libexpat1-dev amd64 2.3.0-1 [121 kB] Get:162 http://ftpmaster.internal/ubuntu impish/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [170 kB] Get:163 http://ftpmaster.internal/ubuntu impish/universe amd64 libpsm2-2 amd64 11.2.185-1 [182 kB] Get:164 http://ftpmaster.internal/ubuntu impish/main amd64 librdmacm1 amd64 33.2-1ubuntu1 [66.0 kB] Get:165 http://ftpmaster.internal/ubuntu impish/universe amd64 libfabric1 amd64 1.11.0-2 [522 kB] Get:166 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libgfortran5 amd64 11.2.0-3ubuntu1 [793 kB] Get:167 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 libhtscodecs2 amd64 1.1.1-2 [53.1 kB] Get:168 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 libhts3 amd64 1.13+ds-1 [390 kB] Get:169 http://ftpmaster.internal/ubuntu impish/universe amd64 libhwloc15 amd64 2.4.1+dfsg-1 [144 kB] Get:170 http://ftpmaster.internal/ubuntu impish/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] Get:171 http://ftpmaster.internal/ubuntu impish/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [314 kB] Get:172 http://ftpmaster.internal/ubuntu impish/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [231 kB] Get:173 http://ftpmaster.internal/ubuntu impish/main amd64 libjs-underscore all 1.9.1~dfsg-3 [99.3 kB] Get:174 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libjs-sphinxdoc all 3.5.4-2 [131 kB] Get:175 http://ftpmaster.internal/ubuntu impish/main amd64 liblapack3 amd64 3.9.0-3ubuntu2 [2255 kB] Get:176 http://ftpmaster.internal/ubuntu impish/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:177 http://ftpmaster.internal/ubuntu impish/main amd64 liblcms2-2 amd64 2.12~rc1-2 [143 kB] Get:178 http://ftpmaster.internal/ubuntu impish/universe amd64 libmbedcrypto3 amd64 2.16.9-0.1ubuntu1 [152 kB] Get:179 http://ftpmaster.internal/ubuntu impish/universe amd64 libmbedx509-0 amd64 2.16.9-0.1ubuntu1 [42.3 kB] Get:180 http://ftpmaster.internal/ubuntu impish/universe amd64 libmbedtls12 amd64 2.16.9-0.1ubuntu1 [72.4 kB] Get:181 http://ftpmaster.internal/ubuntu impish/main amd64 libpciaccess0 amd64 0.16-1build2 [18.0 kB] Get:182 http://ftpmaster.internal/ubuntu impish/main amd64 libxnvctrl0 amd64 470.57.01-0ubuntu1 [11.3 kB] Get:183 http://ftpmaster.internal/ubuntu impish/universe amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [35.4 kB] Get:184 http://ftpmaster.internal/ubuntu impish/universe amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [14.8 kB] Get:185 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 libpmix2 amd64 4.1.0-3ubuntu1 [594 kB] Get:186 http://ftpmaster.internal/ubuntu impish/universe amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [647 kB] Get:187 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 libopenmpi3 amd64 4.1.0-10ubuntu1 [2553 kB] Get:188 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9 amd64 3.9.6-1 [1693 kB] Get:189 http://ftpmaster.internal/ubuntu impish/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] Get:190 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9-dev amd64 3.9.6-1 [4039 kB] Get:191 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3-dev amd64 3.9.4-1 [7216 B] Get:192 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3-all-dev amd64 3.9.4-1 [1108 B] Get:193 http://ftpmaster.internal/ubuntu impish/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [9632 B] Get:194 http://ftpmaster.internal/ubuntu impish/main amd64 libwebpmux3 amd64 0.6.1-2.1 [19.1 kB] Get:195 http://ftpmaster.internal/ubuntu impish/universe amd64 mafft amd64 7.475-1 [1052 kB] Get:196 http://ftpmaster.internal/ubuntu impish/universe amd64 muscle amd64 1:3.8.1551-2build1 [244 kB] Get:197 http://ftpmaster.internal/ubuntu impish/universe amd64 ncbi-data all 6.1.20170106+dfsg1-9 [3519 kB] Get:198 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 ncbi-blast+ amd64 2.11.0+ds-1 [11.2 MB] Get:199 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 openmpi-common all 4.1.0-10ubuntu1 [159 kB] Get:200 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 openmpi-bin amd64 4.1.0-10ubuntu1 [115 kB] Get:201 http://ftpmaster.internal/ubuntu impish/universe amd64 phylip amd64 1:3.697+dfsg-2 [906 kB] Get:202 http://ftpmaster.internal/ubuntu impish/universe amd64 phyml amd64 3:3.3.20200621-1 [1774 kB] Get:203 http://ftpmaster.internal/ubuntu impish/universe amd64 prank amd64 0.0.170427+dfsg-3 [396 kB] Get:204 http://ftpmaster.internal/ubuntu impish/universe amd64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:205 http://ftpmaster.internal/ubuntu impish/universe amd64 probcons amd64 1.12-13 [120 kB] Get:206 http://ftpmaster.internal/ubuntu impish/universe amd64 python-matplotlib-data all 3.3.4-1 [3803 kB] Get:207 http://ftpmaster.internal/ubuntu impish/main amd64 python3-all amd64 3.9.4-1 [1096 B] Get:208 http://ftpmaster.internal/ubuntu impish/main amd64 python3.9-dev amd64 3.9.6-1 [515 kB] Get:209 http://ftpmaster.internal/ubuntu impish/main amd64 python3-dev amd64 3.9.4-1 [24.9 kB] Get:210 http://ftpmaster.internal/ubuntu impish/main amd64 python3-all-dev amd64 3.9.4-1 [1108 B] Get:211 http://ftpmaster.internal/ubuntu impish/main amd64 python3-six all 1.16.0-2 [12.6 kB] Get:212 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-cycler all 0.10.0-3 [8132 B] Get:213 http://ftpmaster.internal/ubuntu impish/main amd64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:214 http://ftpmaster.internal/ubuntu impish/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:215 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-isodate all 0.6.0-2 [24.0 kB] Get:216 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-kiwisolver amd64 1.3.1-1build1 [54.9 kB] Get:217 http://ftpmaster.internal/ubuntu impish/main amd64 python3-linecache2 all 1.0.0-4ubuntu2 [13.3 kB] Get:218 http://ftpmaster.internal/ubuntu impish/main amd64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:219 http://ftpmaster.internal/ubuntu impish/main amd64 python3-numpy amd64 1:1.19.5-1ubuntu2 [2680 kB] Get:220 http://ftpmaster.internal/ubuntu impish/main amd64 python3-pil amd64 8.1.2+dfsg-0.3 [407 kB] Get:221 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-matplotlib amd64 3.3.4-1 [3384 kB] Get:222 http://ftpmaster.internal/ubuntu impish/main amd64 python3-msgpack amd64 1.0.0-6build1 [63.3 kB] Get:223 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-mmtf all 1.1.2-3 [15.9 kB] Get:224 http://ftpmaster.internal/ubuntu impish/main amd64 python3-mysqldb amd64 1.4.4-2build3 [44.8 kB] Get:225 http://ftpmaster.internal/ubuntu impish/main amd64 python3-networkx all 2.4-4ubuntu1 [855 kB] Get:226 http://ftpmaster.internal/ubuntu impish/main amd64 python3-psycopg2 amd64 2.8.6-2 [113 kB] Get:227 http://ftpmaster.internal/ubuntu impish/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [639 kB] Get:228 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-rdflib all 5.0.0-1.1build1 [174 kB] Get:229 http://ftpmaster.internal/ubuntu impish/main amd64 python3-renderpm amd64 3.5.66-1 [59.9 kB] Get:230 http://ftpmaster.internal/ubuntu impish/main amd64 python3-reportlab-accel amd64 3.5.66-1 [18.8 kB] Get:231 http://ftpmaster.internal/ubuntu impish/main amd64 python3-reportlab all 3.5.66-1 [542 kB] Get:232 http://ftpmaster.internal/ubuntu impish/main amd64 python3-setuptools all 52.0.0-4 [305 kB] Get:233 http://ftpmaster.internal/ubuntu impish/main amd64 python3-traceback2 all 1.4.0-6 [16.6 kB] Get:234 http://ftpmaster.internal/ubuntu impish/main amd64 python3-unittest2 all 1.1.0-7 [75.5 kB] Get:235 http://ftpmaster.internal/ubuntu impish/universe amd64 raxml amd64 8.2.12+dfsg-6 [1424 kB] Get:236 http://ftpmaster.internal/ubuntu impish/universe amd64 samtools amd64 1.11-1 [516 kB] Get:237 http://ftpmaster.internal/ubuntu impish/universe amd64 t-coffee amd64 13.41.0.28bdc39+dfsg-4 [1003 kB] Get:238 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-fonts-recommended all 2020.20210202-3 [4973 kB] Get:239 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-base all 2020.20210202-3 [1089 kB] Get:240 http://ftpmaster.internal/ubuntu impish/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:241 http://ftpmaster.internal/ubuntu impish/universe amd64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:242 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get:243 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-pictures all 2020.20210202-3 [6710 kB] Get:244 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-extra all 2020.20210202-3 [13.2 MB] Get:245 http://ftpmaster.internal/ubuntu impish/universe amd64 wise-data all 2.4.1-23 [76.8 kB] Get:246 http://ftpmaster.internal/ubuntu impish/universe amd64 wise amd64 2.4.1-23 [995 kB] Get:247 http://ftpmaster.internal/ubuntu impish/universe amd64 fasttree amd64 2.1.11-2 [174 kB] Get:248 http://ftpmaster.internal/ubuntu impish/universe amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 267 MB in 6s (44.0 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... 14312 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.6-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.3.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.3.0-1) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.6-1_amd64.deb ... Unpacking python3.9-minimal (3.9.6-1) ... Setting up libpython3.9-minimal:amd64 (3.9.6-1) ... Setting up libexpat1:amd64 (2.3.0-1) ... Setting up python3.9-minimal (3.9.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14605 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.4-1_amd64.deb ... Unpacking python3-minimal (3.9.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69ubuntu1_all.deb ... Unpacking mailcap (3.69ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../4-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.6-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.6-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.6-1_amd64.deb ... Unpacking python3.9 (3.9.6-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.4-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.4-1) ... Setting up python3-minimal (3.9.4-1) ... Selecting previously unselected package python3. (Reading database ... 15026 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.4-1_amd64.deb ... Unpacking python3 (3.9.4-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../001-bsdextrautils_2.36.1-8ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../006-libsigsegv2_2.13-1ubuntu1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package flex. Preparing to unpack .../008-flex_2.6.4-8_amd64.deb ... Unpacking flex (2.6.4-8) ... Selecting previously unselected package poppler-data. Preparing to unpack .../009-poppler-data_0.4.10-1_all.deb ... Unpacking poppler-data (0.4.10-1) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../011-tex-common_6.16_all.deb ... Unpacking tex-common (6.16) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../012-libmd0_1.0.3-3build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../013-libbsd0_0.11.3-1ubuntu2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1ubuntu2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../014-libdbus-1-3_1.12.20-2ubuntu1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-2ubuntu1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../015-libelf1_0.185-1_amd64.deb ... Unpacking libelf1:amd64 (0.185-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../016-libglib2.0-0_2.68.4-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.68.4-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../017-libicu67_67.1-7ubuntu1_amd64.deb ... Unpacking libicu67:amd64 (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../018-libxml2_2.9.12+dfsg-2_amd64.deb ... Unpacking libxml2:amd64 (2.9.12+dfsg-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../019-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../020-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../021-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../022-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../023-gettext-base_0.21-4ubuntu3_amd64.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libcbor0.6:amd64. Preparing to unpack .../024-libcbor0.6_0.6.0-0ubuntu3_amd64.deb ... Unpacking libcbor0.6:amd64 (0.6.0-0ubuntu3) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../025-libedit2_3.1-20191231-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../026-libfido2-1_1.6.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.6.0-2) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../027-liblmdb0_0.9.24-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.24-1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../028-libnuma1_2.0.14-0ubuntu2_amd64.deb ... Unpacking libnuma1:amd64 (2.0.14-0ubuntu2) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../029-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../030-libxau6_1%3a1.0.9-1build3_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1build3) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../031-libxdmcp6_1%3a1.1.3-0ubuntu3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../032-libxcb1_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../033-libx11-data_2%3a1.7.2-1_all.deb ... Unpacking libx11-data (2:1.7.2-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../034-libx11-6_2%3a1.7.2-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.2-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../035-libxext6_2%3a1.3.4-0ubuntu3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-0ubuntu3) ... Selecting previously unselected package openssh-client. Preparing to unpack .../036-openssh-client_1%3a8.4p1-5ubuntu2_amd64.deb ... Unpacking openssh-client (1:8.4p1-5ubuntu2) ... Selecting previously unselected package autoconf. Preparing to unpack .../037-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../038-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../039-automake_1%3a1.16.4-1ubuntu1_all.deb ... Unpacking automake (1:1.16.4-1ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../040-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package bwa. Preparing to unpack .../041-bwa_0.7.17-6_amd64.deb ... Unpacking bwa (0.7.17-6) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../042-libargtable2-0_13-1.1_amd64.deb ... Unpacking libargtable2-0 (13-1.1) ... Selecting previously unselected package clustalo. Preparing to unpack .../043-clustalo_1.2.4-7_amd64.deb ... Unpacking clustalo (1.2.4-7) ... Selecting previously unselected package clustalw. Preparing to unpack .../044-clustalw_2.1+lgpl-7_amd64.deb ... Unpacking clustalw (2.1+lgpl-7) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../045-libdebhelper-perl_13.3.4ubuntu2_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu2) ... Selecting previously unselected package libtool. Preparing to unpack .../046-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../047-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../048-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../049-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../051-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../052-libdw1_0.185-1_amd64.deb ... Unpacking libdw1:amd64 (0.185-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../053-debugedit_1%3a5.0-0ubuntu2_amd64.deb ... Unpacking debugedit (1:5.0-0ubuntu2) ... Selecting previously unselected package dwz. Preparing to unpack .../054-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../055-gettext_0.21-4ubuntu3_amd64.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../056-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../057-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../058-debhelper_13.3.4ubuntu2_all.deb ... Unpacking debhelper (13.3.4ubuntu2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../059-python3-lib2to3_3.9.5-0ubuntu3_all.deb ... Unpacking python3-lib2to3 (3.9.5-0ubuntu3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../060-python3-distutils_3.9.5-0ubuntu3_all.deb ... Unpacking python3-distutils (3.9.5-0ubuntu3) ... Selecting previously unselected package dh-python. Preparing to unpack .../061-dh-python_4.20201102ubuntu4_all.deb ... Unpacking dh-python (4.20201102ubuntu4) ... Selecting previously unselected package dialign. Preparing to unpack .../062-dialign_2.2.1-11_amd64.deb ... Unpacking dialign (2.2.1-11) ... Selecting previously unselected package libboost-iostreams1.74.0:amd64. Preparing to unpack .../063-libboost-iostreams1.74.0_1.74.0-8ubuntu3_amd64.deb ... Unpacking libboost-iostreams1.74.0:amd64 (1.74.0-8ubuntu3) ... Selecting previously unselected package libboost-program-options1.74.0:amd64. Preparing to unpack .../064-libboost-program-options1.74.0_1.74.0-8ubuntu3_amd64.deb ... Unpacking libboost-program-options1.74.0:amd64 (1.74.0-8ubuntu3) ... Selecting previously unselected package libcifpp1. Preparing to unpack .../065-libcifpp1_1.0.1-3_amd64.deb ... Unpacking libcifpp1 (1.0.1-3) ... Selecting previously unselected package dssp. Preparing to unpack .../066-dssp_4.0.0-2_amd64.deb ... Unpacking dssp (4.0.0-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../067-libbrotli1_1.0.9-2build2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2build2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../068-libfreetype6_2.10.4+dfsg-1build1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1build1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../069-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../070-fonts-urw-base35_20200910-1_all.deb ... Unpacking fonts-urw-base35 (20200910-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../071-fontconfig-config_2.13.1-4.2ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.1-4.2ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../072-libfontconfig1_2.13.1-4.2ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../073-libjpeg-turbo8_2.0.6-0ubuntu2_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../074-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../075-libdeflate0_1.7-2ubuntu2_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-2ubuntu2) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../076-libjbig0_2.1-3.1build1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1build1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../077-libwebp6_0.6.1-2.1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../078-libtiff5_4.3.0-1_amd64.deb ... Unpacking libtiff5:amd64 (4.3.0-1) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../079-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package libgd3:amd64. Preparing to unpack .../080-libgd3_2.3.0-2_amd64.deb ... Unpacking libgd3:amd64 (2.3.0-2) ... Selecting previously unselected package libhpdf-2.3.0:amd64. Preparing to unpack .../081-libhpdf-2.3.0_2.3.0+dfsg-1build1_amd64.deb ... Unpacking libhpdf-2.3.0:amd64 (2.3.0+dfsg-1build1) ... Selecting previously unselected package mysql-common. Preparing to unpack .../082-mysql-common_5.8+1.0.5ubuntu2_all.deb ... Unpacking mysql-common (5.8+1.0.5ubuntu2) ... Selecting previously unselected package libmysqlclient21:amd64. Preparing to unpack .../083-libmysqlclient21_8.0.26-0ubuntu1_amd64.deb ... Unpacking libmysqlclient21:amd64 (8.0.26-0ubuntu1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../084-libsasl2-modules-db_2.1.27+dfsg-2.1build1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1build1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../085-libsasl2-2_2.1.27+dfsg-2.1build1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1build1) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../086-libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../087-libpq5_13.4-1_amd64.deb ... Unpacking libpq5:amd64 (13.4-1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../088-emboss-lib_6.6.0+dfsg-9ubuntu1_amd64.deb ... Unpacking emboss-lib (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package emboss-data. Preparing to unpack .../089-emboss-data_6.6.0+dfsg-9ubuntu1_all.deb ... Unpacking emboss-data (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package emboss. Preparing to unpack .../090-emboss_6.6.0+dfsg-9ubuntu1_amd64.deb ... Unpacking emboss (6.6.0+dfsg-9ubuntu1) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../091-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../092-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../093-libgs9-common_9.54.0~dfsg1-0ubuntu1_all.deb ... Unpacking libgs9-common (9.54.0~dfsg1-0ubuntu1) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../094-libavahi-common-data_0.8-5ubuntu4_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../095-libavahi-common3_0.8-5ubuntu4_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../096-libavahi-client3_0.8-5ubuntu4_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5ubuntu4) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../097-libcups2_2.3.3op2-5ubuntu1_amd64.deb ... Unpacking libcups2:amd64 (2.3.3op2-5ubuntu1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../098-libidn11_1.33-3_amd64.deb ... Unpacking libidn11:amd64 (1.33-3) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../099-libijs-0.35_0.35-15_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-15) ... Selecting previously unselected package libjbig2dec0:amd64. Preparing to unpack .../100-libjbig2dec0_0.19-3_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.19-3) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../101-libopenjp2-7_2.3.1-1ubuntu5_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu5) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../102-libpaper1_1.1.28_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28) ... Selecting previously unselected package libgs9:amd64. Preparing to unpack .../103-libgs9_9.54.0~dfsg1-0ubuntu1_amd64.deb ... Unpacking libgs9:amd64 (9.54.0~dfsg1-0ubuntu1) ... Selecting previously unselected package ghostscript. Preparing to unpack .../104-ghostscript_9.54.0~dfsg1-0ubuntu1_amd64.deb ... Unpacking ghostscript (9.54.0~dfsg1-0ubuntu1) ... Selecting previously unselected package libnetpbm10. Preparing to unpack .../105-libnetpbm10_2%3a10.0-15.4_amd64.deb ... Unpacking libnetpbm10 (2:10.0-15.4) ... Selecting previously unselected package netpbm. Preparing to unpack .../106-netpbm_2%3a10.0-15.4_amd64.deb ... Unpacking netpbm (2:10.0-15.4) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../107-libpaper-utils_1.1.28_amd64.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../108-libkpathsea6_2020.20200327.54578-7_amd64.deb ... Unpacking libkpathsea6:amd64 (2020.20200327.54578-7) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../109-libptexenc1_2020.20200327.54578-7_amd64.deb ... Unpacking libptexenc1:amd64 (2020.20200327.54578-7) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../110-libsynctex2_2020.20200327.54578-7_amd64.deb ... Unpacking libsynctex2:amd64 (2020.20200327.54578-7) ... Selecting previously unselected package libtexlua53:amd64. Preparing to unpack .../111-libtexlua53_2020.20200327.54578-7_amd64.deb ... Unpacking libtexlua53:amd64 (2020.20200327.54578-7) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../112-libtexluajit2_2020.20200327.54578-7_amd64.deb ... Unpacking libtexluajit2:amd64 (2020.20200327.54578-7) ... Selecting previously unselected package t1utils. Preparing to unpack .../113-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../114-libpixman-1-0_0.40.0-1build2_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.40.0-1build2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../115-libxcb-render0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../116-libxcb-shm0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../117-libxrender1_1%3a0.9.10-1build2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1build2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../118-libcairo2_1.16.0-5ubuntu1_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-5ubuntu1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../119-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../120-libharfbuzz0b_2.7.4-1ubuntu1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../121-libteckit0_2.5.10+ds1-3_amd64.deb ... Unpacking libteckit0:amd64 (2.5.10+ds1-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../122-x11-common_1%3a7.7+22ubuntu1_all.deb ... Unpacking x11-common (1:7.7+22ubuntu1) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../123-libice6_2%3a1.0.10-1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../124-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../125-libxt6_1%3a1.2.0-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.0-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../126-libxmu6_2%3a1.1.3-0ubuntu1_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../127-libxaw7_2%3a1.0.13-1.1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1.1) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../128-libxi6_2%3a1.7.10-1build2_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.10-1build2) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../130-texlive-binaries_2020.20200327.54578-7_amd64.deb ... Unpacking texlive-binaries (2020.20200327.54578-7) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../131-xdg-utils_1.1.3-2ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-2ubuntu2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../132-texlive-base_2020.20210202-3_all.deb ... Unpacking texlive-base (2020.20210202-3) ... Selecting previously unselected package hevea. Preparing to unpack .../133-hevea_2.34-2build3_amd64.deb ... Unpacking hevea (2.34-2build3) ... Selecting previously unselected package libnl-3-200:amd64. Preparing to unpack .../134-libnl-3-200_3.4.0-1build2_amd64.deb ... Unpacking libnl-3-200:amd64 (3.4.0-1build2) ... Selecting previously unselected package libnl-route-3-200:amd64. Preparing to unpack .../135-libnl-route-3-200_3.4.0-1build2_amd64.deb ... Unpacking libnl-route-3-200:amd64 (3.4.0-1build2) ... Selecting previously unselected package libibverbs1:amd64. Preparing to unpack .../136-libibverbs1_33.2-1ubuntu1_amd64.deb ... Unpacking libibverbs1:amd64 (33.2-1ubuntu1) ... Selecting previously unselected package ibverbs-providers:amd64. Preparing to unpack .../137-ibverbs-providers_33.2-1ubuntu1_amd64.deb ... Unpacking ibverbs-providers:amd64 (33.2-1ubuntu1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../138-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../139-libblas3_3.9.0-3ubuntu2_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3ubuntu2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../140-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../141-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../142-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../143-librtmp1_2.4+20151223.gitfa8646d.1-2build2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../144-libssh-4_0.9.6-1_amd64.deb ... Unpacking libssh-4:amd64 (0.9.6-1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../145-libcurl3-gnutls_7.74.0-1.3ubuntu1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1.3ubuntu1) ... Selecting previously unselected package libevent-core-2.1-7:amd64. Preparing to unpack .../146-libevent-core-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libevent-pthreads-2.1-7:amd64. Preparing to unpack .../147-libevent-pthreads-2.1-7_2.1.12-stable-1_amd64.deb ... Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../148-libexpat1-dev_2.3.0-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.3.0-1) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../149-libpsm-infinipath1_3.3+20.604758e7-6.1_amd64.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.1) ... Selecting previously unselected package libpsm2-2. Preparing to unpack .../150-libpsm2-2_11.2.185-1_amd64.deb ... Unpacking libpsm2-2 (11.2.185-1) ... Selecting previously unselected package librdmacm1:amd64. Preparing to unpack .../151-librdmacm1_33.2-1ubuntu1_amd64.deb ... Unpacking librdmacm1:amd64 (33.2-1ubuntu1) ... Selecting previously unselected package libfabric1. Preparing to unpack .../152-libfabric1_1.11.0-2_amd64.deb ... Unpacking libfabric1 (1.11.0-2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../153-libgfortran5_11.2.0-3ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (11.2.0-3ubuntu1) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../154-libhtscodecs2_1.1.1-2_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.1.1-2) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../155-libhts3_1.13+ds-1_amd64.deb ... Unpacking libhts3:amd64 (1.13+ds-1) ... Selecting previously unselected package libhwloc15:amd64. Preparing to unpack .../156-libhwloc15_2.4.1+dfsg-1_amd64.deb ... Unpacking libhwloc15:amd64 (2.4.1+dfsg-1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../157-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../158-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../159-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../160-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../161-libjs-sphinxdoc_3.5.4-2_all.deb ... Unpacking libjs-sphinxdoc (3.5.4-2) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../162-liblapack3_3.9.0-3ubuntu2_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3ubuntu2) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../163-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../164-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libmbedcrypto3:amd64. Preparing to unpack .../165-libmbedcrypto3_2.16.9-0.1ubuntu1_amd64.deb ... Unpacking libmbedcrypto3:amd64 (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libmbedx509-0:amd64. Preparing to unpack .../166-libmbedx509-0_2.16.9-0.1ubuntu1_amd64.deb ... Unpacking libmbedx509-0:amd64 (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libmbedtls12:amd64. Preparing to unpack .../167-libmbedtls12_2.16.9-0.1ubuntu1_amd64.deb ... Unpacking libmbedtls12:amd64 (2.16.9-0.1ubuntu1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../168-libpciaccess0_0.16-1build2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.16-1build2) ... Selecting previously unselected package libxnvctrl0:amd64. Preparing to unpack .../169-libxnvctrl0_470.57.01-0ubuntu1_amd64.deb ... Unpacking libxnvctrl0:amd64 (470.57.01-0ubuntu1) ... Selecting previously unselected package ocl-icd-libopencl1:amd64. Preparing to unpack .../170-ocl-icd-libopencl1_2.2.14-2_amd64.deb ... Unpacking ocl-icd-libopencl1:amd64 (2.2.14-2) ... Selecting previously unselected package libhwloc-plugins:amd64. Preparing to unpack .../171-libhwloc-plugins_2.4.1+dfsg-1_amd64.deb ... Unpacking libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Selecting previously unselected package libpmix2:amd64. Preparing to unpack .../172-libpmix2_4.1.0-3ubuntu1_amd64.deb ... Unpacking libpmix2:amd64 (4.1.0-3ubuntu1) ... Selecting previously unselected package libucx0:amd64. Preparing to unpack .../173-libucx0_1.10.1~rc1+really.1.10.0-1_amd64.deb ... Unpacking libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Selecting previously unselected package libopenmpi3:amd64. Preparing to unpack .../174-libopenmpi3_4.1.0-10ubuntu1_amd64.deb ... Unpacking libopenmpi3:amd64 (4.1.0-10ubuntu1) ... Selecting previously unselected package libpython3.9:amd64. Preparing to unpack .../175-libpython3.9_3.9.6-1_amd64.deb ... Unpacking libpython3.9:amd64 (3.9.6-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../176-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu7_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Selecting previously unselected package libpython3.9-dev:amd64. Preparing to unpack .../177-libpython3.9-dev_3.9.6-1_amd64.deb ... Unpacking libpython3.9-dev:amd64 (3.9.6-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../178-libpython3-dev_3.9.4-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.9.4-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../179-libpython3-all-dev_3.9.4-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.9.4-1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../180-libwebpdemux2_0.6.1-2.1_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../181-libwebpmux3_0.6.1-2.1_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2.1) ... Selecting previously unselected package mafft. Preparing to unpack .../182-mafft_7.475-1_amd64.deb ... Unpacking mafft (7.475-1) ... Selecting previously unselected package muscle. Preparing to unpack .../183-muscle_1%3a3.8.1551-2build1_amd64.deb ... Unpacking muscle (1:3.8.1551-2build1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../184-ncbi-data_6.1.20170106+dfsg1-9_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-9) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../185-ncbi-blast+_2.11.0+ds-1_amd64.deb ... Unpacking ncbi-blast+ (2.11.0+ds-1) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../186-openmpi-common_4.1.0-10ubuntu1_all.deb ... Unpacking openmpi-common (4.1.0-10ubuntu1) ... Selecting previously unselected package openmpi-bin. Preparing to unpack .../187-openmpi-bin_4.1.0-10ubuntu1_amd64.deb ... Unpacking openmpi-bin (4.1.0-10ubuntu1) ... Selecting previously unselected package phylip. Preparing to unpack .../188-phylip_1%3a3.697+dfsg-2_amd64.deb ... Unpacking phylip (1:3.697+dfsg-2) ... Selecting previously unselected package phyml. Preparing to unpack .../189-phyml_3%3a3.3.20200621-1_amd64.deb ... Unpacking phyml (3:3.3.20200621-1) ... Selecting previously unselected package prank. Preparing to unpack .../190-prank_0.0.170427+dfsg-3_amd64.deb ... Unpacking prank (0.0.170427+dfsg-3) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../191-preview-latex-style_12.2-1ubuntu1_all.deb ... Unpacking preview-latex-style (12.2-1ubuntu1) ... Selecting previously unselected package probcons. Preparing to unpack .../192-probcons_1.12-13_amd64.deb ... Unpacking probcons (1.12-13) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../193-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../194-python3-all_3.9.4-1_amd64.deb ... Unpacking python3-all (3.9.4-1) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../195-python3.9-dev_3.9.6-1_amd64.deb ... Unpacking python3.9-dev (3.9.6-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../196-python3-dev_3.9.4-1_amd64.deb ... Unpacking python3-dev (3.9.4-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../197-python3-all-dev_3.9.4-1_amd64.deb ... Unpacking python3-all-dev (3.9.4-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../198-python3-six_1.16.0-2_all.deb ... Unpacking python3-six (1.16.0-2) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../199-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../200-python3-dateutil_2.8.1-6_all.deb ... Unpacking python3-dateutil (2.8.1-6) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../201-python3-decorator_4.4.2-0ubuntu1_all.deb ... Unpacking python3-decorator (4.4.2-0ubuntu1) ... Selecting previously unselected package python3-isodate. Preparing to unpack .../202-python3-isodate_0.6.0-2_all.deb ... Unpacking python3-isodate (0.6.0-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../203-python3-kiwisolver_1.3.1-1build1_amd64.deb ... Unpacking python3-kiwisolver (1.3.1-1build1) ... Selecting previously unselected package python3-linecache2. Preparing to unpack .../204-python3-linecache2_1.0.0-4ubuntu2_all.deb ... Unpacking python3-linecache2 (1.0.0-4ubuntu2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../205-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../206-python3-numpy_1%3a1.19.5-1ubuntu2_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1ubuntu2) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../207-python3-pil_8.1.2+dfsg-0.3_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../208-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-msgpack. Preparing to unpack .../209-python3-msgpack_1.0.0-6build1_amd64.deb ... Unpacking python3-msgpack (1.0.0-6build1) ... Selecting previously unselected package python3-mmtf. Preparing to unpack .../210-python3-mmtf_1.1.2-3_all.deb ... Unpacking python3-mmtf (1.1.2-3) ... Selecting previously unselected package python3-mysqldb. Preparing to unpack .../211-python3-mysqldb_1.4.4-2build3_amd64.deb ... Unpacking python3-mysqldb (1.4.4-2build3) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../212-python3-networkx_2.4-4ubuntu1_all.deb ... Unpacking python3-networkx (2.4-4ubuntu1) ... Selecting previously unselected package python3-psycopg2. Preparing to unpack .../213-python3-psycopg2_2.8.6-2_amd64.deb ... Unpacking python3-psycopg2 (2.8.6-2) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../214-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-rdflib. Preparing to unpack .../215-python3-rdflib_5.0.0-1.1build1_all.deb ... Unpacking python3-rdflib (5.0.0-1.1build1) ... Selecting previously unselected package python3-renderpm:amd64. Preparing to unpack .../216-python3-renderpm_3.5.66-1_amd64.deb ... Unpacking python3-renderpm:amd64 (3.5.66-1) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../217-python3-reportlab-accel_3.5.66-1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.5.66-1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../218-python3-reportlab_3.5.66-1_all.deb ... Unpacking python3-reportlab (3.5.66-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../219-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package python3-traceback2. Preparing to unpack .../220-python3-traceback2_1.4.0-6_all.deb ... Unpacking python3-traceback2 (1.4.0-6) ... Selecting previously unselected package python3-unittest2. Preparing to unpack .../221-python3-unittest2_1.1.0-7_all.deb ... Unpacking python3-unittest2 (1.1.0-7) ... Selecting previously unselected package raxml. Preparing to unpack .../222-raxml_8.2.12+dfsg-6_amd64.deb ... Unpacking raxml (8.2.12+dfsg-6) ... Selecting previously unselected package samtools. Preparing to unpack .../223-samtools_1.11-1_amd64.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package t-coffee. Preparing to unpack .../224-t-coffee_13.41.0.28bdc39+dfsg-4_amd64.deb ... Unpacking t-coffee (13.41.0.28bdc39+dfsg-4) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../225-texlive-fonts-recommended_2020.20210202-3_all.deb ... Unpacking texlive-fonts-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../226-texlive-latex-base_2020.20210202-3_all.deb ... Unpacking texlive-latex-base (2020.20210202-3) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../227-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../228-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../229-texlive-latex-recommended_2020.20210202-3_all.deb ... Unpacking texlive-latex-recommended (2020.20210202-3) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../230-texlive-pictures_2020.20210202-3_all.deb ... Unpacking texlive-pictures (2020.20210202-3) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../231-texlive-latex-extra_2020.20210202-3_all.deb ... Unpacking texlive-latex-extra (2020.20210202-3) ... Selecting previously unselected package wise-data. Preparing to unpack .../232-wise-data_2.4.1-23_all.deb ... Unpacking wise-data (2.4.1-23) ... Selecting previously unselected package wise. Preparing to unpack .../233-wise_2.4.1-23_amd64.deb ... Unpacking wise (2.4.1-23) ... Selecting previously unselected package fasttree. Preparing to unpack .../234-fasttree_2.1.11-2_amd64.deb ... Unpacking fasttree (2.1.11-2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../235-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package sbuild-build-depends-python-biopython-dummy. Preparing to unpack .../236-sbuild-build-depends-python-biopython-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Setting up libhtscodecs2:amd64 (1.1.1-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up liblmdb0:amd64 (0.9.24-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libpixman-1-0:amd64 (0.40.0-1build2) ... Setting up libpciaccess0:amd64 (0.16-1build2) ... Setting up mysql-common (5.8+1.0.5ubuntu2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:amd64 (8.0.26-0ubuntu1) ... Setting up libxau6:amd64 (1:1.0.9-1build3) ... Setting up libhpdf-2.3.0:amd64 (2.3.0+dfsg-1build1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up probcons (1.12-13) ... Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libtexlua53:amd64 (2020.20200327.54578-7) ... Setting up mafft (7.475-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.68.4-1) ... No schema files found: doing nothing. Setting up bwa (0.7.17-6) ... Setting up libboost-iostreams1.74.0:amd64 (1.74.0-8ubuntu3) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-8ubuntu3) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libtexluajit2:amd64 (2020.20200327.54578-7) ... Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libbrotli1:amd64 (1.0.9-2build2) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up phylip (1:3.697+dfsg-2) ... Setting up x11-common (1:7.7+22ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-2ubuntu2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.39-3) ... Setting up libnetpbm10 (2:10.0-15.4) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up muscle (1:3.8.1551-2build1) ... Setting up libcbor0.6:amd64 (0.6.0-0ubuntu3) ... Setting up emboss-data (6.6.0+dfsg-9ubuntu1) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up t-coffee (13.41.0.28bdc39+dfsg-4) ... Setting up poppler-data (0.4.10-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.3.0-1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1build1) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libjbig2dec0:amd64 (0.19-3) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libidn11:amd64 (1.33-3) ... Setting up libteckit0:amd64 (2.5.10+ds1-3) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5ubuntu4) ... Setting up libdbus-1-3:amd64 (1.12.20-2ubuntu1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu1) ... Setting up t1utils (1.41-4) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up ucf (3.0043) ... Setting up wise-data (2.4.1-23) ... Setting up libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Setting up libkpathsea6:amd64 (2020.20200327.54578-7) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1build1) ... Setting up libssh-4:amd64 (0.9.6-1) ... Setting up libgfortran5:amd64 (11.2.0-3ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libcifpp1 (1.0.1-3) ... Setting up libnuma1:amd64 (2.0.14-0ubuntu2) ... Setting up libmd0:amd64 (1.0.3-3build1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libnl-3-200:amd64 (3.4.0-1build2) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.0-10ubuntu1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libmbedcrypto3:amd64 (2.16.9-0.1ubuntu1) ... Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Setting up fasttree (2.1.11-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libfido2-1:amd64 (1.6.0-2) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:amd64 (0.6.1-2.1) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu2) ... Setting up mailcap (3.69ubuntu1) ... Setting up libelf1:amd64 (0.185-1) ... Setting up dialign (2.2.1-11) ... Setting up libxml2:amd64 (2.9.12+dfsg-2) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up libsynctex2:amd64 (2020.20200327.54578-7) ... Setting up libpython3.9-stdlib:amd64 (3.9.6-1) ... Setting up libpython3-stdlib:amd64 (3.9.4-1) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-1.1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up raxml (8.2.12+dfsg-6) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libgs9-common (9.54.0~dfsg1-0ubuntu1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libdw1:amd64 (0.185-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Setting up liblapack3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu1) ... Setting up libmbedx509-0:amd64 (2.16.9-0.1ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu3) ... Setting up wise (2.4.1-23) ... Setting up libwebpdemux2:amd64 (0.6.1-2.1) ... Setting up libedit2:amd64 (3.1-20191231-2) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:amd64 (2.16.9-0.1ubuntu1) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu4) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu1) ... Setting up libpaper-utils (1.1.28) ... Setting up clustalo (1.2.4-7) ... Setting up dssp (4.0.0-2) ... Setting up libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnl-route-3-200:amd64 (3.4.0-1build2) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython3.9:amd64 (3.9.6-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libptexenc1:amd64 (2020.20200327.54578-7) ... Setting up libjs-sphinxdoc (3.5.4-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libtiff5:amd64 (4.3.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu4) ... Setting up python3.9 (3.9.6-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.4-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:amd64 (33.2-1ubuntu1) ... Setting up flex (2.6.4-8) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1build2) ... Setting up ibverbs-providers:amd64 (33.2-1ubuntu1) ... Setting up openssh-client (1:8.4p1-5ubuntu2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libpq5:amd64 (13.4-1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu3) ... Setting up libpython3.9-dev:amd64 (3.9.6-1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3ubuntu1) ... Setting up python3 (3.9.4-1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-5ubuntu1) ... Setting up libxnvctrl0:amd64 (470.57.01-0ubuntu1) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-mysqldb (1.4.4-2build3) ... Setting up python3-six (1.16.0-2) ... Setting up dh-autoreconf (20) ... Setting up python3-isodate (0.6.0-2) ... Setting up python3-pil:amd64 (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-linecache2 (1.0.0-4ubuntu2) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.66-1) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up python3-kiwisolver (1.3.1-1build1) ... Setting up python3-psycopg2 (2.8.6-2) ... Setting up netpbm (2:10.0-15.4) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up python3-reportlab (3.5.66-1) ... Setting up libcups2:amd64 (2.3.3op2-5ubuntu1) ... Setting up python3.9-dev (3.9.6-1) ... Setting up python3-rdflib (5.0.0-1.1build1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up emboss-lib (6.6.0+dfsg-9ubuntu1) ... Setting up python3-msgpack (1.0.0-6build1) ... Setting up python3-lib2to3 (3.9.5-0ubuntu3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.5-0ubuntu3) ... Setting up dh-python (4.20201102ubuntu4) ... Setting up librdmacm1:amd64 (33.2-1ubuntu1) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libhts3:amd64 (1.13+ds-1) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Setting up libpython3-dev:amd64 (3.9.4-1) ... Setting up python3-renderpm:amd64 (3.5.66-1) ... Setting up emboss (6.6.0+dfsg-9ubuntu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up libgs9:amd64 (9.54.0~dfsg1-0ubuntu1) ... Setting up libxi6:amd64 (2:1.7.10-1build2) ... Setting up python3-traceback2 (1.4.0-6) ... Setting up python3-all (3.9.4-1) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up ghostscript (9.54.0~dfsg1-0ubuntu1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up python3-networkx (2.4-4ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up samtools (1.11-1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up libpython3-all-dev:amd64 (3.9.4-1) ... Setting up python3-dev (3.9.4-1) ... Setting up python3-unittest2 (1.1.0-7) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode Setting up python3-numpy (1:1.19.5-1ubuntu2) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-all-dev (3.9.4-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up libpmix2:amd64 (4.1.0-3ubuntu1) ... Setting up libopenmpi3:amd64 (4.1.0-10ubuntu1) ... Setting up python3-mmtf (1.1.2-3) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up hevea (2.34-2build3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up openmpi-bin (4.1.0-10ubuntu1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up phyml (3:3.3.20200621-1) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu1) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-154-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-2ubuntu4 dpkg-dev_1.20.9ubuntu2 g++-10_10.3.0-8ubuntu1 g++-11_11.2.0-3ubuntu1 gcc-10_10.3.0-8ubuntu1 gcc-11_11.2.0-3ubuntu1 libc6-dev_2.34-0ubuntu1 libstdc++-10-dev_10.3.0-8ubuntu1 libstdc++-11-dev_11.2.0-3ubuntu1 libstdc++6_11.2.0-3ubuntu1 linux-libc-dev_5.13.0-14.14 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.8 autoconf_2.69-14 automake_1:1.16.4-1ubuntu1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu3 base-passwd_3.5.51 bash_5.1-3ubuntu1 binutils_2.37-2ubuntu4 binutils-common_2.37-2ubuntu4 binutils-x86-64-linux-gnu_2.37-2ubuntu4 bsdextrautils_2.36.1-8ubuntu1 bsdutils_1:2.36.1-8ubuntu1 build-essential_12.9ubuntu1 bwa_0.7.17-6 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 clustalo_1.2.4-7 clustalw_2.1+lgpl-7 coreutils_8.32-4ubuntu2 cpp_4:11.2.0-1ubuntu1 cpp-10_10.3.0-8ubuntu1 cpp-11_11.2.0-3ubuntu1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_4.11.2 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-python_4.20201102ubuntu4 dh-strip-nondeterminism_1.12.0-1 dialign_2.2.1-11 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dssp_4.0.0-2 dwz_0.14-1 e2fsprogs_1.46.3-1ubuntu2 emboss_6.6.0+dfsg-9ubuntu1 emboss-data_6.6.0+dfsg-9ubuntu1 emboss-lib_6.6.0+dfsg-9ubuntu1 fakeroot_1.25.3-1.1ubuntu2 fasttree_2.1.11-2 file_1:5.39-3 findutils_4.8.0-1ubuntu2 flex_2.6.4-8 fontconfig-config_2.13.1-4.2ubuntu3 fonts-lmodern_2.004.5-6.1 fonts-lyx_2.3.6-1 fonts-urw-base35_20200910-1 g++_4:11.2.0-1ubuntu1 g++-10_10.3.0-8ubuntu1 g++-11_11.2.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-10_10.3.0-8ubuntu1 gcc-10-base_10.3.0-8ubuntu1 gcc-11_11.2.0-3ubuntu1 gcc-11-base_11.2.0-3ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 ghostscript_9.54.0~dfsg1-0ubuntu1 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4ubuntu1 hevea_2.34-2build3 hostname_3.23 ibverbs-providers_33.2-1ubuntu1 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libapache-pom-java_18-1 libapparmor1_3.0.3-0ubuntu1 libapt-pkg6.0_2.3.8 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libargtable2-0_13-1.1 libasan6_11.2.0-3ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-3ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu2 libaudit1_1:3.0-2ubuntu2 libavahi-client3_0.8-5ubuntu4 libavahi-common-data_0.8-5ubuntu4 libavahi-common3_0.8-5ubuntu4 libbinutils_2.37-2ubuntu4 libblas3_3.9.0-3ubuntu2 libblkid1_2.36.1-8ubuntu1 libboost-iostreams1.74.0_1.74.0-8ubuntu3 libboost-program-options1.74.0_1.74.0-8ubuntu3 libbrotli1_1.0.9-2build2 libbsd0_0.11.3-1ubuntu2 libbz2-1.0_1.0.8-4ubuntu3 libc-bin_2.34-0ubuntu1 libc-dev-bin_2.34-0ubuntu1 libc6_2.34-0ubuntu1 libc6-dev_2.34-0ubuntu1 libcairo2_1.16.0-5ubuntu1 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcbor0.6_0.6.0-0ubuntu3 libcc1-0_11.2.0-3ubuntu1 libcifpp1_1.0.1-3 libcom-err2_1.46.3-1ubuntu2 libcommons-logging-java_1.2-2 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.18-4ubuntu1 libcrypt1_1:4.4.18-4ubuntu1 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-2ubuntu4 libctf0_2.37-2ubuntu4 libcups2_2.3.3op2-5ubuntu1 libcurl3-gnutls_7.74.0-1.3ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu1 libdbus-1-3_1.12.20-2ubuntu1 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu2 libdeflate0_1.7-2ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu1 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-1 libedit2_3.1-20191231-2 libelf1_0.185-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libexpat1_2.3.0-1 libexpat1-dev_2.3.0-1 libext2fs2_1.46.3-1ubuntu2 libfabric1_1.11.0-2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfido2-1_1.6.0-2 libfile-stripnondeterminism-perl_1.12.0-1 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.2ubuntu3 libfreetype6_2.10.4+dfsg-1build1 libgcc-10-dev_10.3.0-8ubuntu1 libgcc-11-dev_11.2.0-3ubuntu1 libgcc-s1_11.2.0-3ubuntu1 libgcrypt20_1.8.7-5ubuntu1 libgd3_2.3.0-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_11.2.0-3ubuntu1 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-3ubuntu1 libgpg-error0_1.38-2build1 libgraphite2-3_1.3.14-1 libgs9_9.54.0~dfsg1-0ubuntu1 libgs9-common_9.54.0~dfsg1-0ubuntu1 libgssapi-krb5-2_1.18.3-6 libharfbuzz0b_2.7.4-1ubuntu1 libhogweed6_3.7.3-1 libhpdf-2.3.0_2.3.0+dfsg-1build1 libhts3_1.13+ds-1 libhtscodecs2_1.1.1-2 libhwloc-plugins_2.4.1+dfsg-1 libhwloc15_2.4.1+dfsg-1 libibverbs1_33.2-1ubuntu1 libice6_2:1.0.10-1 libicu67_67.1-7ubuntu1 libidn11_1.33-3 libidn2-0_2.3.1-1 libijs-0.35_0.35-15 libimagequant0_2.12.2-1.1 libip4tc2_1.8.7-1ubuntu2 libisl23_0.24-1 libitm1_11.2.0-3ubuntu1 libjbig0_2.1-3.1build1 libjbig2dec0_0.19-3 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_3.5.4-2 libjs-underscore_1.9.1~dfsg-3 libjson-c5_0.15-2build2 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu4 libkpathsea6_2020.20200327.54578-7 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 liblapack3_3.9.0-3ubuntu2 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 liblmdb0_0.9.24-1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblsan0_11.2.0-3ubuntu1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmbedcrypto3_2.16.9-0.1ubuntu1 libmbedtls12_2.16.9-0.1ubuntu1 libmbedx509-0_2.16.9-0.1ubuntu1 libmd0_1.0.3-3build1 libmount1_2.36.1-8ubuntu1 libmpc3_1.2.0-1build1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3build1 libmysqlclient21_8.0.26-0ubuntu1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnetpbm10_2:10.0-15.4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnl-3-200_3.4.0-1build2 libnl-route-3-200_3.4.0-1build2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnuma1_2.0.14-0ubuntu2 libopenjp2-7_2.3.1-1ubuntu5 libopenmpi3_4.1.0-10ubuntu1 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu8 libpam-modules-bin_1.3.1-5ubuntu8 libpam-runtime_1.3.1-5ubuntu8 libpam0g_1.3.1-5ubuntu8 libpaper-utils_1.1.28 libpaper1_1.1.28 libpciaccess0_0.16-1build2 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build3 libpdfbox-java_1:1.8.16-2 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1build2 libpmix2_4.1.0-3ubuntu1 libpng16-16_1.6.37-3build3 libpq5_13.4-1 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2 libpsm-infinipath1_3.3+20.604758e7-6.1 libpsm2-2_11.2.185-1 libptexenc1_2020.20200327.54578-7 libpython3-all-dev_3.9.4-1 libpython3-dev_3.9.4-1 libpython3-stdlib_3.9.4-1 libpython3.9_3.9.6-1 libpython3.9-dev_3.9.6-1 libpython3.9-minimal_3.9.6-1 libpython3.9-stdlib_3.9.6-1 libquadmath0_11.2.0-3ubuntu1 librdmacm1_33.2-1ubuntu1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2.1build1 libsasl2-modules-db_2.1.27+dfsg-2.1build1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-8ubuntu1 libsqlite3-0_3.35.5-1 libss2_1.46.3-1ubuntu2 libssh-4_0.9.6-1 libssl1.1_1.1.1k-1ubuntu1 libstdc++-10-dev_10.3.0-8ubuntu1 libstdc++-11-dev_11.2.0-3ubuntu1 libstdc++6_11.2.0-3ubuntu1 libsub-override-perl_0.09-2 libsynctex2_2020.20200327.54578-7 libsystemd0_248.3-1ubuntu5 libtasn1-6_4.16.0-2 libteckit0_2.5.10+ds1-3 libtexlua53_2020.20200327.54578-7 libtexluajit2_2020.20200327.54578-7 libtiff5_4.3.0-1 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtool_2.4.6-15 libtsan0_11.2.0-3ubuntu1 libubsan1_11.2.0-3ubuntu1 libuchardet0_0.0.7-1 libucx0_1.10.1~rc1+really.1.10.0-1 libudev1_248.3-1ubuntu5 libunistring2_0.9.10-4 libuuid1_2.36.1-8ubuntu1 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libx11-6_2:1.7.2-1 libx11-data_2:1.7.2-1 libxau6_1:1.0.9-1build3 libxaw7_2:1.0.13-1.1 libxcb-render0_1.14-3ubuntu1 libxcb-shm0_1.14-3ubuntu1 libxcb1_1.14-3ubuntu1 libxdmcp6_1:1.1.3-0ubuntu3 libxext6_2:1.3.4-0ubuntu3 libxi6_2:1.7.10-1build2 libxml2_2.9.12+dfsg-2 libxmu6_2:1.1.3-0ubuntu1 libxnvctrl0_470.57.01-0ubuntu1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1build2 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.13.0-14.14 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_16 m4_1.4.18-5 mafft_7.475-1 mailcap_3.69ubuntu1 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.36.1-8ubuntu1 muscle_1:3.8.1551-2build1 mysql-common_5.8+1.0.5ubuntu2 ncbi-blast+_2.11.0+ds-1 ncbi-data_6.1.20170106+dfsg1-9 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 netpbm_2:10.0-15.4 ocl-icd-libopencl1_2.2.14-2 openmpi-bin_4.1.0-10ubuntu1 openmpi-common_4.1.0-10ubuntu1 openssh-client_1:8.4p1-5ubuntu2 openssl_1.1.1k-1ubuntu1 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 phylip_1:3.697+dfsg-2 phyml_3:3.3.20200621-1 pinentry-curses_1.1.1-1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 poppler-data_0.4.10-1 prank_0.0.170427+dfsg-3 preview-latex-style_12.2-1ubuntu1 probcons_1.12-13 procps_2:3.3.17-5ubuntu3 python-matplotlib-data_3.3.4-1 python3_3.9.4-1 python3-all_3.9.4-1 python3-all-dev_3.9.4-1 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-0ubuntu1 python3-dev_3.9.4-1 python3-distutils_3.9.5-0ubuntu3 python3-isodate_0.6.0-2 python3-kiwisolver_1.3.1-1build1 python3-lib2to3_3.9.5-0ubuntu3 python3-linecache2_1.0.0-4ubuntu2 python3-matplotlib_3.3.4-1 python3-minimal_3.9.4-1 python3-mmtf_1.1.2-3 python3-msgpack_1.0.0-6build1 python3-mysqldb_1.4.4-2build3 python3-networkx_2.4-4ubuntu1 python3-numpy_1:1.19.5-1ubuntu2 python3-pil_8.1.2+dfsg-0.3 python3-pkg-resources_52.0.0-4 python3-psycopg2_2.8.6-2 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-rdflib_5.0.0-1.1build1 python3-renderpm_3.5.66-1 python3-reportlab_3.5.66-1 python3-reportlab-accel_3.5.66-1 python3-scipy_1.6.0-2 python3-setuptools_52.0.0-4 python3-six_1.16.0-2 python3-traceback2_1.4.0-6 python3-unittest2_1.1.0-7 python3.9_3.9.6-1 python3.9-dev_3.9.6-1 python3.9-minimal_3.9.6-1 raxml_8.2.12+dfsg-6 readline-common_8.1-2 rpcsvc-proto_1.4.2-0ubuntu4 samtools_1.11-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_248.3-1ubuntu5 systemd-sysv_248.3-1ubuntu5 systemd-timesyncd_248.3-1ubuntu5 sysvinit-utils_2.96-7ubuntu1 t-coffee_13.41.0.28bdc39+dfsg-4 t1utils_1.41-4 tar_1.34+dfsg-1build1 tex-common_6.16 texlive-base_2020.20210202-3 texlive-binaries_2020.20200327.54578-7 texlive-fonts-recommended_2020.20210202-3 texlive-latex-base_2020.20210202-3 texlive-latex-extra_2020.20210202-3 texlive-latex-recommended_2020.20210202-3 texlive-pictures_2020.20210202-3 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu1 wise_2.4.1-23 wise-data_2.4.1-23 x11-common_1:7.7+22ubuntu1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Aug 30 15:59:30 2021 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.78+dfsg-5ubuntu1.dsc dpkg-source: info: extracting python-biopython in /<>/python-biopython-1.78+dfsg dpkg-source: info: unpacking python-biopython_1.78+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.78+dfsg-5ubuntu1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying blastdbv4-impl.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying stabilize-phyml-test.patch dpkg-source: info: applying spelling-error-in-binaries.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying mkdssp4.path Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22026614 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22026614 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22026614 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.78+dfsg-5ubuntu1 dpkg-buildpackage: info: source distribution impish dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' dh_auto_clean install -d /<>/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home pybuild --clean -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/python-biopython-1.78+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/python-biopython-1.78+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /<>/python-biopython-1.78\+dfsg/debian/.debhelper/generated/_source/home pybuild --configure -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' dh_auto_build pybuild --build -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/kNN.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/_utils.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqFeature.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/File.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/SeqRecord.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/LogisticRegression.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MaxEntropy.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/bgzf.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Seq.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/NaiveBayes.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/MarkovModel.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/pairwise2.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application copying Bio/Application/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep copying Bio/PDB/mmcifio.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/PICIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/ic_data.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/Chain.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/__init__.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/BioSeq.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/Loader.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL copying BioSQL/DBUtils.py -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio copying Bio/Align/_aligners.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs creating /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/Bio creating build/temp.linux-x86_64-3.9/Bio/Align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Align/_aligners.c -o build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Align/_aligners.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so building 'Bio.cpairwise2' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function ‘_get_match_score’: Bio/cpairwise2module.c:60:5: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.9/Python.h:154, from Bio/cpairwise2module.c:16: /usr/include/python3.9/ceval.h:17:43: note: declared here 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/cpairwise2module.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-x86_64-3.9/Bio/Nexus x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Nexus/cnexus.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-x86_64-3.9/Bio/PDB creating build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-x86_64-3.9/Bio/motifs x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/motifs/_pwm.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-x86_64-3.9/Bio/Cluster x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/Cluster/cluster.o build/temp.linux-x86_64-3.9/Bio/Cluster/clustermodule.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so building 'Bio.PDB.kdtrees' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-UcBMuS/python3.9-3.9.6=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>/python-biopython-1.78+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/Bio/PDB/kdtrees.o -o /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so cd Doc && make make[2]: Entering directory '/<>/python-biopython-1.78+dfsg/Doc' sed "s/\@VERSION\@/1.78/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:655: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:713: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:809: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:817: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:818: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:831: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:548: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:554: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:558: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:561: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:645: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:766: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:849: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:931: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1172: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1231: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1241: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1283: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1384: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:945: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1312: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1684: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1697: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1770: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1800: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1803: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1830: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1830: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1858: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1962: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2052: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2185: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2366: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2919: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3015: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1417: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1494: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1499: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1523: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:285: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:782: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:800: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:821: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:844: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:869: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:898: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:920: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:952: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:75: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:285: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:289: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:297: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:800: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:822: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:824: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1021: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1413: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1431: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1432: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1433: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1434: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1635: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_advanced.tex:36: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:361: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:286: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:531: Warning: line too long ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:892: Warning: line too long ./Tutorial/chapter_seq_annot.tex:909: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:151: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:833: Warning: line too long ./Tutorial/chapter_seqio.tex:1181: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1545: Warning: line too long ./Tutorial/chapter_align.tex:1547: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2190: Warning: line too long ./Tutorial/chapter_align.tex:2298: Warning: line too long ./Tutorial/chapter_align.tex:2299: Warning: line too long ./Tutorial/chapter_align.tex:2300: Warning: line too long ./Tutorial/chapter_align.tex:2330: Warning: line too long ./Tutorial/chapter_align.tex:2331: Warning: line too long ./Tutorial/chapter_align.tex:2332: Warning: line too long ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:433: Warning: line too long ./Tutorial/chapter_blast.tex:435: Warning: line too long ./Tutorial/chapter_blast.tex:449: Warning: Image in text ./Tutorial/chapter_blast.tex:465: Warning: Image in text ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:943: Warning: line too long ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:289: Warning: Image in text ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:992: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:407: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:803: Warning: line too long ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1050: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1091: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1091: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1124: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1158: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1158: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1206: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1260: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1260: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1358: Warning: line too long ./Tutorial/chapter_cookbook.tex:1359: Warning: line too long ./Tutorial/chapter_cookbook.tex:1407: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1736: Warning: '_' occurring outside math mode ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:80: Warning: '_' occurring outside math mode ./Tutorial.tex:127: Warning: line too long ./Tutorial.tex:138: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:138: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:142: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:545: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:186: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:192: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:85: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:154: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:268: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:286: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:343: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:457: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:463: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:586: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:655: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:713: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:219: Warning: line too long ./Tutorial/chapter_seq_annot.tex:276: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:279: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:285: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:525: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:531: Warning: line too long ./Tutorial/chapter_seq_annot.tex:627: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:635: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:678: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:695: Warning: line too long ./Tutorial/chapter_seq_annot.tex:710: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:731: Warning: line too long ./Tutorial/chapter_seq_annot.tex:742: Warning: line too long ./Tutorial/chapter_seq_annot.tex:752: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:773: Warning: line too long ./Tutorial/chapter_seq_annot.tex:809: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:817: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:818: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:831: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:892: Warning: line too long ./Tutorial/chapter_seq_annot.tex:909: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:44: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:44: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:69: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:151: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:151: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:249: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:310: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:330: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:333: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:401: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:404: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:416: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:417: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:507: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:510: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:512: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:548: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:554: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:558: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:561: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:571: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:645: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:766: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:787: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:833: Warning: line too long ./Tutorial/chapter_seqio.tex:849: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:931: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1172: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1181: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1216: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1231: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1241: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1283: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1303: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1384: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:113: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_align.tex:444: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:633: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:813: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:892: Warning: Undefined label: 'sec:subs_mat_ex' ./Tutorial/chapter_align.tex:915: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:919: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:945: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:953: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1312: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1545: Warning: line too long ./Tutorial/chapter_align.tex:1547: Warning: line too long ./Tutorial/chapter_align.tex:1684: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1697: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1770: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1799: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1800: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1803: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1804: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1830: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1830: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1858: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1962: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:2008: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2008: Warning: line too long ./Tutorial/chapter_align.tex:2052: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2185: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2190: Warning: line too long ./Tutorial/chapter_align.tex:2298: Warning: line too long ./Tutorial/chapter_align.tex:2299: Warning: line too long ./Tutorial/chapter_align.tex:2300: Warning: line too long ./Tutorial/chapter_align.tex:2330: Warning: line too long ./Tutorial/chapter_align.tex:2331: Warning: line too long ./Tutorial/chapter_align.tex:2332: Warning: line too long ./Tutorial/chapter_align.tex:2366: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2569: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2919: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:2991: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3015: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:433: Warning: line too long ./Tutorial/chapter_blast.tex:435: Warning: line too long ./Tutorial/chapter_blast.tex:445: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:449: Warning: Image in text ./Tutorial/chapter_blast.tex:461: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_blast.tex:465: Warning: Image in text ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:728: Warning: line too long ./Tutorial/chapter_searchio.tex:730: Warning: line too long ./Tutorial/chapter_searchio.tex:734: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:961: Warning: line too long ./Tutorial/chapter_searchio.tex:1082: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:234: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:297: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:323: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:417: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:562: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:568: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:777: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:897: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:943: Warning: line too long ./Tutorial/chapter_entrez.tex:1058: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1061: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1108: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1154: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1206: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1241: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1249: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1326: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1386: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1417: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1494: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1499: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1523: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:31: Warning: line too long ./Tutorial/chapter_uniprot.tex:37: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:45: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:442: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:491: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:276: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:285: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:289: Warning: Image in text ./Tutorial/chapter_pdb.tex:422: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:467: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:484: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:593: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:607: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:611: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:647: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:658: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:684: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:970: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:992: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:992: Warning: line too long ./Tutorial/chapter_pdb.tex:1015: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1043: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1078: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1118: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1121: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1169: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1183: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1380: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1381: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:782: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long ./Tutorial/chapter_motifs.tex:551: Warning: line too long ./Tutorial/chapter_motifs.tex:557: Warning: line too long ./Tutorial/chapter_motifs.tex:559: Warning: line too long ./Tutorial/chapter_motifs.tex:568: Warning: line too long ./Tutorial/chapter_motifs.tex:572: Warning: line too long ./Tutorial/chapter_motifs.tex:574: Warning: line too long ./Tutorial/chapter_motifs.tex:583: Warning: line too long ./Tutorial/chapter_motifs.tex:585: Warning: line too long ./Tutorial/chapter_motifs.tex:586: Warning: line too long ./Tutorial/chapter_motifs.tex:588: Warning: line too long ./Tutorial/chapter_motifs.tex:687: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:771: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:1564: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1565: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1566: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:747: Warning: line too long ./Tutorial/chapter_cluster.tex:800: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:803: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:821: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:844: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:869: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:898: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:920: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:952: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:39: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:40: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:70: Warning: overfull line in array : array too wide ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:70: Warning: line too long ./Tutorial/chapter_learning.tex:75: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:211: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:275: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:285: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:289: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:297: Warning: Undefined label: 'sec:LogisticRegressionTraining' ./Tutorial/chapter_learning.tex:407: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:352: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:199: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:204: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:336: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:441: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:450: Warning: line too long ./Tutorial/chapter_cookbook.tex:455: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:478: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:559: Warning: line too long ./Tutorial/chapter_cookbook.tex:641: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:800: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:803: Warning: line too long ./Tutorial/chapter_cookbook.tex:822: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:824: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:838: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1021: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1038: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1050: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1091: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1091: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1124: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1158: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1158: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1206: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1260: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1260: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1336: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1358: Warning: line too long ./Tutorial/chapter_cookbook.tex:1359: Warning: line too long ./Tutorial/chapter_cookbook.tex:1407: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1413: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1416: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1420: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1431: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1432: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1433: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1434: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1440: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1533: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1560: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1612: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1621: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1635: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1736: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1741: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_advanced.tex:36: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:222: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:80: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' ./Tutorial.tex:127: Warning: line too long ./Tutorial.tex:138: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:138: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:142: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'u' failed Fixpoint reached in 2 step(s) pdflatex --shell-escape "\def\bpversion{1.78}\input{Tutorial}" This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file Tutorial.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./images/biopython_logo.pdf>]pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already us ed, duplicate ignored \relax l.102 \include{Tutorial/chapter_introduction} [1] (./Tutorial/chapter_introduction.tex Chapter 1. [2] LaTeX Warning: Citation `cock2009' on page 3 undefined on input line 91. LaTeX Warning: Citation `chapman2000' on page 3 undefined on input line 95. LaTeX Warning: Citation `hamelryck2003a' on page 3 undefined on input line 96. LaTeX Warning: Citation `dehoon2004' on page 3 undefined on input line 97. LaTeX Warning: Citation `pritchard2006' on page 3 undefined on input line 98. LaTeX Warning: Citation `talevich2012' on page 3 undefined on input line 99. LaTeX Warning: Citation `cock2010' on page 3 undefined on input line 100. [3] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [4 <./images/biopython_logo_old.jpg>] LaTeX Warning: Reference `sec:seq-comparison' on page 5 undefined on input line 186. Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . LaTeX Warning: Reference `sec:appendix-handles' on page 5 undefined on input li ne 192. [5]) [6] (./Tutorial/chapter_quick_start.tex Chapter 2. LaTeX Warning: Reference `chapter:cookbook' on page 7 undefined on input line 1 4. LaTeX Warning: Reference `chapter:advanced' on page 7 undefined on input line 1 4. LaTeX Warning: Reference `chapter:seq_objects' on page 7 undefined on input lin e 19. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [7]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 8 undefined on input line 45. LaTeX Warning: Reference `sec:sequence-parsing' on page 8 undefined on input li ne 65. LaTeX Warning: Reference `chapter:entrez' on page 8 undefined on input line 65. LaTeX Warning: Reference `chapter:uniprot' on page 8 undefined on input line 65 . LaTeX Warning: Reference `sec:align_clustal' on page 8 undefined on input line 65. [8] LaTeX Warning: Reference `chapter:seqio' on page 9 undefined on input line 72. LaTeX Warning: Reference `sec:connecting-with-biological-databases' on page 9 u ndefined on input line 79. (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [9]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:align' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:cookbook' on page 10 undefined on input line 150. LaTeX Warning: Reference `chapter:entrez' on page 10 undefined on input line 15 8. LaTeX Warning: Reference `chapter:uniprot' on page 10 undefined on input line 1 59. [10] LaTeX Warning: Reference `chapter:cookbook' on page 11 undefined on input line 169. ) [11] (./Tutorial/chapter_seq_objects.tex Chapter 3. LaTeX Warning: Reference `chapter:seq_annot' on page 12 undefined on input line 5. LaTeX Warning: Reference `chapter:seqio' on page 12 undefined on input line 5. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [12] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:mutable-seq' on page 13 undefined on input line 8 5. (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [13]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 14 undefined on input l ine 154. LaTeX Warning: Reference `chapter:seqio' on page 14 undefined on input line 156 . (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [15]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 16 undefined on input line 268. (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-module-functions' on page 17 undefined on inp ut line 343. (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [17]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 18 undefined on input li ne 457. LaTeX Warning: Reference `sec:seq-module-functions' on page 18 undefined on inp ut line 463. [18] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [19]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 20 undefined on input line 586. [20] (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3803DD4CC09C0CB16CB0DA82C47FC9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AD5FC012C704C150685AC4578589E6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 21 undefined on input line 655. [21] (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 22 undefined on input line 713 . [22] (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [23] (./Tutorial/chapter_seq_annot.tex Chapter 4. LaTeX Warning: Reference `chapter:seq_objects' on page 24 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seqio' on page 24 undefined on input line 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_objects' on page 24 undefined on input li ne 21. LaTeX Warning: Reference `chapter:seqio' on page 24 undefined on input line 21. LaTeX Warning: Reference `sec:FASTQ-filtering-example' on page 24 undefined on input line 34. [24] LaTeX Warning: Reference `sec:seq_features' on page 25 undefined on input line 38. LaTeX Warning: Reference `chapter:seqio' on page 25 undefined on input line 48. (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [25]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:quick_start' on page 26 undefined on input li ne 131. LaTeX Warning: Reference `chapter:seqio' on page 26 undefined on input line 133 . (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [26]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 27 undefined on input line 212 . (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [27]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq_features' on page 28 undefined on input line 276. LaTeX Warning: Reference `sec:locations' on page 28 undefined on input line 285 . LaTeX Warning: Reference `sec:locations' on page 28 undefined on input line 293 . [28] [29] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [30]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [31]) LaTeX Warning: Reference `sec:locations' on page 32 undefined on input line 525 . (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seq-comparison' on page 33 undefined on input lin e 627. LaTeX Warning: Reference `sec:locations' on page 33 undefined on input line 635 . (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [33]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 34 undefined on input line 675 . LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 34 undefined on i nput line 678. (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [35]) (./_minted-Tutorial/171E9B14E98BBB8F1EBB704EB1FE2C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 36 undefined on input l ine 809. (./_minted-Tutorial/DCEECAA726E5CD1EE674B0FDA1B1DA0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:FASTQ-slicing-off-primer' on page 36 undefined on input line 817. LaTeX Warning: Reference `sec:FASTQ-slicing-off-adaptor' on page 36 undefined o n input line 818. LaTeX Warning: Reference `chapter:seqio' on page 36 undefined on input line 831 . (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [36]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4987879C3FF61E04C891C0AD5AB67A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [38] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [39] (./Tutorial/chapter_seqio.tex Chapter 5. LaTeX Warning: Reference `chapter:quick_start' on page 40 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seq_annot' on page 40 undefined on input line 4. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 40 undefined on input line 13. LaTeX Warning: Reference `chapter:seq_objects' on page 40 undefined on input li ne 13. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 40 undefined on in put line 15. LaTeX Warning: Reference `sec:SeqIO_Online' on page 40 undefined on input line 23. LaTeX Warning: Reference `sec:appendix-handles' on page 40 undefined on input l ine 23. (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [40]) LaTeX Warning: Reference `sec:sequence-parsing' on page 41 undefined on input l ine 44. (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:sequence-parsing-plus-pylab' on page 41 undefined on input line 69. (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [41]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [42] LaTeX Warning: Reference `chapter:seq_annot' on page 43 undefined on input line 151. (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [43]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [44]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:writing-sequence-files' on page 45 undefined on i nput line 310. (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:appendix-handles' on page 45 undefined on input l ine 333. (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [45]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-index-bgzf' on page 46 undefined on input l ine 401. LaTeX Warning: Reference `sec:efetch' on page 46 undefined on input line 417. [46] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `chapter:entrez' on page 48 undefined on input line 50 7. LaTeX Warning: Reference `sec:entrez-guidelines' on page 48 undefined on input line 507. LaTeX Warning: Reference `chapter:uniprot' on page 48 undefined on input line 5 12. (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `sec:seqio_todict' on page 48 undefined on input line 548. [48] LaTeX Warning: Reference `sec:SeqIO-index' on page 49 undefined on input line 5 54. LaTeX Warning: Reference `sec:SeqIO-index-db' on page 49 undefined on input lin e 558. LaTeX Warning: Reference `sec:SeqIO-indexing-discussion' on page 49 undefined o n input line 561. LaTeX Warning: Reference `sec:SeqIO-index' on page 49 undefined on input line 5 71. (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex [49]) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `sec:fasta-parsing' on page 50 undefined on input line 645. (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex [50]) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:fastq-indexing' on page 51 undefined on input lin e 766. [51] (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 52 undefined on input line 787. (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (9.93459pt too wide) in paragraph at lines 831--836 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) LaTeX Warning: Reference `sec:SeqIO-sort' on page 53 undefined on input line 84 9. Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [53]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 54 undefined on input line 931. (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [54]) (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [55]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex [56]) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 57 undefined on input line 1172. [57] (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 58 undefined on i nput line 1216. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 58 undefined on input line 1216. LaTeX Warning: Reference `sec:seq-reverse-complement' on page 58 undefined on i nput line 1231. (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 58 undefine d on input line 1241. (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [58]) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 59 undefined on input li ne 1283. (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 59 undefined on input l ine 1303. (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex [59]) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1321--1323 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) LaTeX Warning: Reference `chapter:cookbook' on page 61 undefined on input line 1384. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [61] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 62 undefined on input l ine 31. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 62 undefined on i nput line 35. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [62]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [63]) LaTeX Warning: Reference `sec:alignment-format' on page 64 undefined on input l ine 113. (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [64] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [65]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [66] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [67]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [68] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [69]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 70 undefined on input l ine 444. Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [70]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [71]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 73 undefined on input l ine 633. (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [73] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [74]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [75]) LaTeX Warning: Reference `sec:SeqRecord-addition' on page 76 undefined on input line 813. (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [76] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:subs_mat_ex' on page 77 undefined on input line 8 92. (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise' on page 77 undefined on input line 915. [77] LaTeX Warning: Reference `chapter:seqio' on page 78 undefined on input line 919 . (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:emboss-needle-water' on page 78 undefined on inpu t line 945. (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [78] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [79]) LaTeX Warning: Reference `chapter:phylo' on page 80 undefined on input line 109 1. (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1124--1128 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) LaTeX Warning: Reference `sec:appendix-handles' on page 83 undefined on input l ine 1312. (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [84]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [85] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [87]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `durbin1998' on page 88 undefined on input line 1684. Overfull \hbox (0.78606pt too wide) in paragraph at lines 1682--1685 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 88 undefined on input l ine 1697. (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `waterman1987' on page 89 undefined on input line 1770. (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) LaTeX Warning: Reference `sec:pairwise-substitution-scores' on page 90 undefine d on input line 1799. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1799. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 90 undefined on input line 1799. LaTeX Warning: Reference `sec:pairwise-basic' on page 90 undefined on input lin e 1800. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1803. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 90 undefined on input line 1804. (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `altschul1990' on page 90 undefined on input line 1830. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 90 undefined o n input line 1830. (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [90]) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `altschul1990' on page 91 undefined on input line 1858. (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: Reference `table:align-meta-attributes' on page 92 undefined on input line 1962. Overfull \hbox (32.852pt too wide) in paragraph at lines 1966--2010 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [92] [93]) LaTeX Warning: Reference `sec:pairwise-examples' on page 94 undefined on input line 2052. (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `kent2002' on page 96 undefined on input line 2185. (./_minted-Tutorial/E7291659349564D1AF91AD63517FDDE767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A9BF9BE7E29EF854A32E7BD4E79E346E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2274--2275 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `schneider2005' on page 99 undefined on input line 2366 . LaTeX Warning: Reference `sec:substitution_matrices' on page 99 undefined on in put line 2366. (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [100]) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [101]) (./_minted-Tutorial/034BEABC04AF21423AA043E0986724A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [103]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [105] (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8B04CCF5A253EA893E0D643775A806A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/38FD553026F1DCA254B4E8289D036D8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E03A76801FF279689473D2E5A1B193F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [108]) LaTeX Warning: Citation `altschul1990' on page 109 undefined on input line 2919 . (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F63834565B18947B52E7892E30EC01B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) LaTeX Warning: Citation `henikoff1992' on page 110 undefined on input line 2991 . LaTeX Warning: Citation `dayhoff1978' on page 110 undefined on input line 2991. (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `schneider2005' on page 110 undefined on input line 301 5. (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [110] (./Tutorial/chapter_blast.tex Chapter 7. LaTeX Warning: Reference `chapter:searchio' on page 111 undefined on input line 18. [111] LaTeX Warning: Reference `sec:parsing-blast' on page 112 undefined on input lin e 58. (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 112 undefined on input line 11 9. LaTeX Warning: Reference `sec:parsing-blast' on page 112 undefined on input lin e 124. (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [112]) LaTeX Warning: Reference `sec:parsing-blast' on page 113 undefined on input lin e 146. (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 113 undefined on input lin e 155. LaTeX Warning: Reference `sec:running-www-blast' on page 113 undefined on input line 164. LaTeX Warning: Reference `sec:alignment-tools' on page 113 undefined on input l ine 192. (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) LaTeX Warning: Reference `sec:parsing-blast' on page 114 undefined on input lin e 236. LaTeX Warning: Reference `sec:running-www-blast' on page 114 undefined on input line 282. LaTeX Warning: Reference `sec:running-local-blast' on page 114 undefined on inp ut line 284. [114] LaTeX Warning: Reference `sec:appendix-handles' on page 115 undefined on input line 299. (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 115 undefined on input line 33 5. LaTeX Warning: Reference `chapter:align' on page 115 undefined on input line 33 5. (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [115]) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [116]) LaTeX Warning: Reference `fig:blastrecord' on page 117 undefined on input line 445. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:psiblastrecord' on page 117 undefined on input li ne 461. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [117] [118 <./images/BlastRecord.png>] [119 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [120] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [121]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [123]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [124] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [125]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [126]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [127] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [128] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 130 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [131]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [132] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [133] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 134 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [134]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [135] [136] (./Tutorial/chapter_entrez.tex Chapter 9. [137] LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 138 undefined on input line 21. (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [138] LaTeX Warning: Reference `sec:entrez-webenv' on page 139 undefined on input lin e 60. LaTeX Warning: Reference `sec:BioSQL' on page 139 undefined on input line 63. (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [140]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:efetch' on page 141 undefined on input line 216. LaTeX Warning: Reference `sec:entrez-einfo' on page 141 undefined on input line 220. (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:efetch' on page 141 undefined on input line 234. (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 142 undefined on input lin e 297. [142] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 143 undefined on in put line 323. LaTeX Warning: Reference `sec:efetch' on page 143 undefined on input line 323. (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [143] [144]) LaTeX Warning: Reference `chapter:seqio' on page 145 undefined on input line 41 7. (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [145]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 146 undefined on input line 479. LaTeX Warning: Reference `sec:entrez-webenv' on page 146 undefined on input lin e 481. (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [146]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:elink-citations' on page 147 undefined on input l ine 562. LaTeX Warning: Reference `sec:entrez_example_genbank' on page 147 undefined on input line 568. (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [147]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [149] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [150]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 151 undefined on in put line 777. LaTeX Warning: Reference `sec:efetch' on page 151 undefined on input line 777. [151] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [152]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 153 undefined on input lin e 897. [153] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [154]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:orchids' on page 156 undefined on input line 1065 . (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [156]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 157 undefined on input lin e 1108. (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:orchids' on page 157 undefined on input line 1154 . [157] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 158 undefined on input lin e 1206. (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [158]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 159 undefined on input lin e 1241. LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 159 undefined on in put line 1248. LaTeX Warning: Reference `sec:entrez-webenv' on page 159 undefined on input lin e 1249. (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [159]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 160 undefined on input line 13 01. (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [160]) LaTeX Warning: Reference `sec:entrez-guidelines' on page 161 undefined on input line 1325. LaTeX Warning: Reference `sec:entrez-webenv' on page 161 undefined on input lin e 1326. (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [161] LaTeX Warning: Reference `sec:entrez-search-fetch-genbank' on page 162 undefine d on input line 1386. (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7516DA4BD78D0A0E4F2C69502DE8DBBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez_example_genbank' on page 162 undefined on input line 1417. (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [162]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [163]) LaTeX Warning: Reference `sec:entrez-and-medline' on page 164 undefined on inpu t line 1494. LaTeX Warning: Reference `sec:elink' on page 164 undefined on input line 1499. (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 164 undefined on input lin e 1523. (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [164] (./Tutorial/chapter_uniprot.tex Chapter 10. LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 165 undefined on input line 12. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:expasy_swissprot' on page 165 undefined on input line 37. (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 165 undefined on input line 45. [165] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [167]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [168]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [169]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [170] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:orchids' on page 171 undefined on input line 343. (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [171]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [172]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [174] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [175]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:problem_structures' on page 176 undefined on inpu t line 85. (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [176] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [177]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [178] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) LaTeX Warning: Reference `fig:smcra' on page 179 undefined on input line 276. LaTeX Warning: Reference `sec:problem_structures' on page 179 undefined on inpu t line 285. Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [179] [180 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [181] LaTeX Warning: Reference `sec:hetero_problems' on page 182 undefined on input l ine 422. (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:point_mutations' on page 182 undefined on input l ine 467. (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:disordered_atoms' on page 182 undefined on input line 484. [182] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [183]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:smcra' on page 184 undefined on input line 611. (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [184]) LaTeX Warning: Reference `fig:smcra' on page 185 undefined on input line 658. (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [185] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [186]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [187]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [188]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [189] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) LaTeX Warning: Reference `table:ic-attribs' on page 190 undefined on input line 970. Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] LaTeX Warning: Citation `golub1989' on page 190 undefined on input line 1015. (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [190]) LaTeX Warning: Citation `hamelryck2005' on page 191 undefined on input line 104 3. LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `table:DSSP-codes' on page 191 undefined on input line 1078. LaTeX Warning: Reference `sec:residue_depth' on page 191 undefined on input lin e 1118. [191] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `hamelryck2003a' on page 192 undefined on input line 11 69. [192] [193] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [194] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [195] LaTeX Warning: Citation `hamelryck2003b' on page 196 undefined on input line 13 80. LaTeX Warning: Citation `majumdar2005' on page 196 undefined on input line 1381 . ) [196] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [197])) [198] (./Tutorial/chapter_phylo.tex Chapter 13. LaTeX Warning: Citation `talevich2012' on page 199 undefined on input line 9. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [199]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-simple-draw' on page 200 undefined on input line 96. (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [200] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-color-draw' on page 201 undefined on input line 192. (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [201 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [202 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [203]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [204] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [205 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [206] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [207] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- LaTeX Warning: Reference `sec:alignment-tools' on page 208 undefined on input l ine 711. [208] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:PhyloXML' on page 209 undefined on input line 782 . [209]) [210] (./Tutorial/chapter_motifs.tex Chapter 14. LaTeX Warning: Reference `sec:links' on page 211 undefined on input line 8. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [211]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [212]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `cornish1985' on page 213 undefined on input line 164. LaTeX Warning: Citation `cavener1987' on page 213 undefined on input line 165. (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [213] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [214]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [215]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [216]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [217]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [218]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [219] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [220]) LaTeX Warning: Citation `bailey1994' on page 221 undefined on input line 541. (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [221]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [222]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `matys2003' on page 223 undefined on input line 687. (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [223]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `table:transfaccodes' on page 224 undefined on input l ine 771. LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [224] [225]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA78267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [226]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [227]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [228]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [230] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [232]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [233]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [234] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [235] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [236]) [237] (./Tutorial/chapter_cluster.tex Chapter 15. LaTeX Warning: Citation `dehoon2004' on page 238 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 238 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 238 undefined on input line 30. [238] [239] [240] LaTeX Warning: Citation `snedecor1989' on page 241 undefined on input line 154. [241] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 242 undefined on input line 183. (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [242]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [243] LaTeX Warning: Reference `sec:distancefunctions' on page 244 undefined on input line 277. [244] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [245] LaTeX Warning: Reference `sec:distancefunctions' on page 246 undefined on input line 345. (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [246] [247] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [248] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [249] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 250 undefined on input line 555. (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [250]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Citation `kohonen1997' on page 251 undefined on input line 599. LaTeX Warning: Citation `tamayo1999' on page 251 undefined on input line 599. [251] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 252 undefined on input line 646. [252] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ LaTeX Warning: Citation `yeung2001' on page 253 undefined on input line 659. LaTeX Warning: Citation `golub1971' on page 253 undefined on input line 667. (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [253] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [254] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [255] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 256 undefined on input line 800. LaTeX Warning: Reference `sec:distancematrix' on page 256 undefined on input li ne 803. (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:clustercentroids' on page 256 undefined on input line 821. (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [256] LaTeX Warning: Reference `sec:distancefunctions' on page 257 undefined on input line 844. (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 257 undefined on input line 869. (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [257] LaTeX Warning: Reference `sec:distancefunctions' on page 258 undefined on input line 898. (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 258 undefined on input line 920. [258] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Citation `hihara2001' on page 259 undefined on input line 952. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [259]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [260] (./Tutorial/chapter_learning.tex Chapter 16. [261] LaTeX Warning: Reference `eq:OP' on page 262 undefined on input line 40. LaTeX Warning: Reference `eq:NOP' on page 262 undefined on input line 40. LaTeX Warning: Reference `table:training' on page 262 undefined on input line 7 5. (./_minted-Tutorial/8B3B5AF56E90E069FAEF17DB5597747067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [262]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [263]) [264] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `eq:OP' on page 265 undefined on input line 211. LaTeX Warning: Reference `eq:NOP' on page 265 undefined on input line 211. (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [265]) LaTeX Warning: Reference `eq:OP' on page 266 undefined on input line 273. LaTeX Warning: Reference `eq:NOP' on page 266 undefined on input line 273. LaTeX Warning: Reference `eq:OP' on page 266 undefined on input line 275. LaTeX Warning: Reference `eq:NOP' on page 266 undefined on input line 275. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. LaTeX Warning: Reference `sec:LogisticRegression' on page 266 undefined on inpu t line 285. [266] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. LaTeX Warning: Reference `table:training' on page 267 undefined on input line 2 89. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:LogisticRegressionTraining' on page 267 undefined on input line 297. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [267]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [268])) [269] (./Tutorial/chapter_graphics.tex Chapter 17. LaTeX Warning: Citation `pritchard2006' on page 270 undefined on input line 18. LaTeX Warning: Citation `toth2006' on page 270 undefined on input line 28. LaTeX Warning: Citation `vanderauwera2009' on page 270 undefined on input line 31. LaTeX Warning: Reference `chapter:seq_annot' on page 270 undefined on input lin e 36. LaTeX Warning: Reference `chapter:seqio' on page 270 undefined on input line 36 . [270] LaTeX Warning: Reference `chapter:seqio' on page 271 undefined on input line 64 . (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear' on page 271 undefined on input li ne 136. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [271]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_circular' on page 272 undefined on input line 167. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [272 <./images/plasmid_linear.png (PNG copy)>]) LaTeX Warning: Reference `sec:seq_features' on page 273 undefined on input line 220. [273 <./images/plasmid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 274 undefined on input l ine 260. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [274]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 275 undefined on input l ine 330. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 275 unde fined on input line 339. LaTeX Warning: Reference `sec:gd_feature_captions' on page 275 undefined on inp ut line 339. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 275 unde fined on input line 339. LaTeX Warning: Reference `sec:gd_feature_captions' on page 275 undefined on inp ut line 339. LaTeX Warning: Reference `sec:gd_nice_example' on page 275 undefined on input l ine 345. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [275] [276 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigils' on page 277 undefined on input line 38 7. Excluding 'htmlonly' comment. LaTeX Warning: Reference `sec:gd_sigils' on page 277 undefined on input line 40 3. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_shafts' on page 277 undefined on i nput line 434. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 277 undefined on input l ine 439. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_heads' on page 277 undefined on in put line 463. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 277 undefined on input l ine 468. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:gd_top_down' on page 277 undefined on input line 488. (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [277] [278 <./images/GD_sigils.png>] [279 <./images/GD_sigil_arrow _shafts.png>] [280 <./images/GD_sigil_arrow_heads.png>] [281]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear_nice' on page 282 undefined on inp ut line 570. LaTeX Warning: Reference `fig:plasmid_circular_nice' on page 282 undefined on i nput line 571. LaTeX Warning: Reference `sec:gd_nice_example' on page 282 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 282 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 282 undefined on input l ine 585. LaTeX Warning: Reference `sec:gd_nice_example' on page 282 undefined on input l ine 585. LaTeX Warning: Citation `proux2002' on page 282 undefined on input line 596. LaTeX Warning: Reference `sec:efetch' on page 282 undefined on input line 605. LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 282 undefined on input line 608. LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 282 undefin ed on input line 610. [282 <./images/plasmid_linear_nice.png (PNG copy)>] [283 <./images/plasmid_circ ular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [284]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [285]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_simple' on page 286 undefined on inpu t line 732. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 286 undefined on inpu t line 739. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 286 undefined on inpu t line 739. LaTeX Warning: Citation `proux2002' on page 286 undefined on input line 759. (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex [286 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex [287]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 288 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 901. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl2' on page 288 undefined on input l ine 927. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 934. LaTeX Warning: Reference `sec:gd_cross_links' on page 288 undefined on input li ne 934. [288] [289 <./images/three_track_cl.png>] [290 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Citation `jupe2012' on page 291 undefined on input line 1012. (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex [291] [292 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [293]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 294 undefined on input line 1114. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [294]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 295 undefined on input line 1194. ) [295] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [296] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [297]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [298] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [299] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [300]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [301]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [302]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [303] (./Tutorial/chapter_cookbook.tex Chapter 20. LaTeX Warning: Reference `chapter:seqio' on page 304 undefined on input line 22 . (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [304]) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 305 undefined on i nput line 58. (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [305] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 306 undefined on input line 146. (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [306]) LaTeX Warning: Reference `sec:translation' on page 307 undefined on input line 199. LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 307 undefined o n input line 204. (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [307] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 308 undefined on inpu t line 336. (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [308]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [309] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 310 undefined on i nput line 441. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 310 undefined on i nput line 455. Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 310 undefined on input line 478. [310] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [312]) LaTeX Warning: Reference `sec:SeqIO-conversion' on page 313 undefined on input line 641. LaTeX Warning: Citation `cock2010' on page 313 undefined on input line 644. [313] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [314]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 315 undefined on input line 800. (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [315] LaTeX Warning: Reference `sec:SeqIO-index' on page 316 undefined on input line 822. LaTeX Warning: Reference `sec:SeqIO-sort' on page 316 undefined on input line 8 24. LaTeX Warning: Reference `sec:SeqIO-conversion' on page 316 undefined on input line 838. (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [316] LaTeX Warning: Reference `sec:translation' on page 317 undefined on input line 905. (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8 A4A36.pygtex [317]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [318]) LaTeX Warning: Reference `sec:gd_nice_example' on page 319 undefined on input l ine 1021. LaTeX Warning: Reference `chapter:seqio' on page 319 undefined on input line 10 38. (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-len-hist' on page 319 undefined on input line 1106. [319] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [320 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 321 undefined on input line 1172. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 321 undefined on input line 1186. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [321 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [322 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 323 undefined on input line 1264. (./_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [323]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot-scatter' on page 324 undefined on in put line 1340. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [324 <./images/dot_plot_scatter.png>]) LaTeX Warning: Reference `fig:paired-end-qual-plot' on page 325 undefined on in put line 1401. Excluding 'htmlonly' comment. LaTeX Warning: Reference `chapter:align' on page 325 undefined on input line 14 13. [325 <./images/SRR001666.png>] LaTeX Warning: Reference `chapter:align' on page 326 undefined on input line 14 20. (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:consensus' on page 326 undefined on input line 14 31. LaTeX Warning: Reference `sec:pssm' on page 326 undefined on input line 1432. LaTeX Warning: Reference `sec:getting_info_content' on page 326 undefined on in put line 1433. LaTeX Warning: Reference `sec:sub_matrix' on page 326 undefined on input line 1 434. LaTeX Warning: Reference `sec:summary_info' on page 326 undefined on input line 1440. (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [326]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [327] LaTeX Warning: Reference `sec:summary_info' on page 328 undefined on input line 1560. (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [328]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:align_clustal' on page 329 undefined on input lin e 1635. (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [329]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3687DE99B121F342703021A11AC3AB867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A63394593860DFB229C6A3AEEAB5A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [330]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 331 undefined on input line 17 41. ) [331] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 332 undefined on input line 55. (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [332] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [333]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [334] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [335]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `sec:doctest' on page 336 undefined on input line 282. (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [336]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [337] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [338] (./Tutorial/chapter_advanced.tex Chapter 22. LaTeX Warning: Reference `sec:substitution_matrices' on page 339 undefined on i nput line 36. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [339] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [340] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:freq_table' on page 341 undefined on input line 1 62. (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [341]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [342] (./Tutorial/chapter_contributing.tex Chapter 23. LaTeX Warning: Reference `chapter:cookbook' on page 343 undefined on input line 32. [343] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) LaTeX Warning: Reference `chapter:testing' on page 344 undefined on input line 85. LaTeX Warning: Reference `chapter:testing' on page 344 undefined on input line 101. [344]) [345] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [346]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqIO_compressed' on page 347 undefined on input line 91. (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [347] [348] [349] [350] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1000 mkdir: cannot create directory ‘././sbuild-nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1000 This is METAFONT, Version 2.7182818 (TeX Live 2020/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1000.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06943pt) Font metrics written on tcrm1000.tfm. Output written on tcrm1000.600gf (128 characters, 23548 bytes). Transcript written on tcrm1000.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm1000.600pk: successfully generated. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Tutorial.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (351 pages, 2431464 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.78}\input{Tutorial}" This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.43 ...feature or location}{32}{subsection.4.3.3} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [12]) [13] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [15] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [17]) [18] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [19] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [20]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [21]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [22]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [23]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [24]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [25] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [26]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [27] (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3803DD4CC09C0CB16CB0DA82C47FC9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AD5FC012C704C150685AC4578589E6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [28] (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [29] (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [30] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [31] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [33]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [35] [36] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [38]) (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [39]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [40]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [41]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [42]) (./_minted-Tutorial/171E9B14E98BBB8F1EBB704EB1FE2C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCEECAA726E5CD1EE674B0FDA1B1DA0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [43]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [44]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4987879C3FF61E04C891C0AD5AB67A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [45] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [46] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [48]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [49] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [50]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [51]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [53] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [54]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) [55] (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex [56]) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex [57]) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (9.93459pt too wide) in paragraph at lines 831--836 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [61]) (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [62]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex [63]) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex) [64] (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [65]) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1321--1323 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [67]) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [69]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [70]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [71] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [73] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [74]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [75] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [76]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [85] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1124--1128 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [87] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1682--1685 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1966--2010 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99] [100]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7291659349564D1AF91AD63517FDDE767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [103]) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A9BF9BE7E29EF854A32E7BD4E79E346E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2274--2275 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [108]) (./_minted-Tutorial/034BEABC04AF21423AA043E0986724A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [110]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [111]) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [112] (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8B04CCF5A253EA893E0D643775A806A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) (./_minted-Tutorial/38FD553026F1DCA254B4E8289D036D8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E03A76801FF279689473D2E5A1B193F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [114]) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [115]) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F63834565B18947B52E7892E30EC01B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [116]) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [117] (./Tutorial/chapter_blast.tex Chapter 7. [118] (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [119]) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [120]) [121] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [123]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [142] [143] (./Tutorial/chapter_entrez.tex Chapter 9. [144] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [145] (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [146]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [147]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [149] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [150] [151]) (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [152]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [153]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [154]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [156] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [157]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [158] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [159]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [160] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [161]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [162]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [163]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [164] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [165]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [167]) (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [168] (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7516DA4BD78D0A0E4F2C69502DE8DBBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [169]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [170]) (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [171] (./Tutorial/chapter_uniprot.tex Chapter 10. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [172] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [174]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [175]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [176]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [177] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [178]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [179]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [180]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [181] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [182]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [183] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [184]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [185] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [186] [187 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [188] (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [189] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [190]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [191]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [192] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [193]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [194]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [195]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [196] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [197]) LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [198] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [199] [200] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [201] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [202]) [203] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [204])) [205] (./Tutorial/chapter_phylo.tex Chapter 13. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [206]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [208 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [209 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [210]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [213] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [214] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [215] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [216]) [217] (./Tutorial/chapter_motifs.tex Chapter 14. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [218]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [219]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [220] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [221]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [222]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [223]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [224]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [225]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [226] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [227]) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [228]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [230]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231] [232]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA78267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [233]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [234]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [235]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [236]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [237] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [238]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [239]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [240]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [241] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [242] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [243]) [244] (./Tutorial/chapter_cluster.tex Chapter 15. [245] [246] [247] [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [249]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250] [251] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [252] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [253] [254] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [255] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [256] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [257]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [258] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [260] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [261] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [262] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [263] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [264] (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [265] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [266]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [267] (./Tutorial/chapter_learning.tex Chapter 16. [268] (./_minted-Tutorial/8B3B5AF56E90E069FAEF17DB5597747067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [269]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [270]) [271] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [272]) Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. [273] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [274]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [275])) [276] (./Tutorial/chapter_graphics.tex Chapter 17. [277] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [278]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [279 <./images/plasmid_linear.png (PNG copy)>]) [280 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [281]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [282] [283 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [284] [285 <./images/GD_sigils.png>] [286 <./images/GD_sigil_arrow _shafts.png>] [287 <./images/GD_sigil_arrow_heads.png>] [288]) Excluding 'htmlonly' comment. [289 <./images/plasmid_linear_nice.png (PNG copy) >] [290 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [291]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [292]) Excluding 'htmlonly' comment. [293 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [294]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [295] Excluding 'htmlonly' comment. [296 <./image s/three_track_cl.png>] [297 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [298] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [299] [300 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [301]) Excluding 'htmlonly' comment.) [302] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [303] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [304]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [305] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [306] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [307]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [308]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [309]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [310] (./Tutorial/chapter_cookbook.tex Chapter 20. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [312] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [313]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [314] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [315]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [316] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [317] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [318]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [319]) [320] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [321]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [322] (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [323] (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8 A4A36.pygtex [324]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [325]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. [326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [328 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [329 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [330]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [331 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [332 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [334] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [335]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [336]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3687DE99B121F342703021A11AC3AB867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A63394593860DFB229C6A3AEEAB5A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [339] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [340]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [341] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [343]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [344] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [345] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [346] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [347] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [348]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [349] (./Tutorial/chapter_contributing.tex Chapter 23. [350] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351]) [352] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [353]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [354] [355] [356] [357] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (358 pages, 2489182 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.78}\input{Tutorial}" This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.tocpdfTeX warning (ext4): destin ation with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.43 ...feature or location}{39}{subsection.4.3.3} % [1] [2] [3] [4] [5] [6] [7]) [8] (./Tutorial/chapter_introduction.tex Chapter 1. [9] [10] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 122--128 Underfull \hbox (badness 10000) in paragraph at lines 134--136 (./_minted-Tutorial/default-pyg-prefix.pygstyle) (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [11 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 188--190 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [12]) [13] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [14]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [15] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [16]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [17]) [18] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [19] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [20]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [21]) (./_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [22]) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [23]) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [24]) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [25] (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [26]) (./_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [27] (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3803DD4CC09C0CB16CB0DA82C47FC9567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AD5FC012C704C150685AC4578589E6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [28] (./_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [29] (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [30] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [31] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [32]) (./_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C 9070A.pygtex [33]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [34]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [35] [36] (./_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [37]) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [38]) (./_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [39]) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [40]) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [41]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [42]) (./_minted-Tutorial/171E9B14E98BBB8F1EBB704EB1FE2C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCEECAA726E5CD1EE674B0FDA1B1DA0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [43]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [44]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4987879C3FF61E04C891C0AD5AB67A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [45] (./_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [46] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8 A4A36.pygtex [47]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8 A4A36.pygtex [48]) (./_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C 9070A.pygtex) [49] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [50]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8 A4A36.pygtex [51]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [52]) (./_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [53] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8 A4A36.pygtex [54]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C 9070A.pygtex) [55] (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8 A4A36.pygtex [56]) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8 A4A36.pygtex [57]) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [58] (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (9.93459pt too wide) in paragraph at lines 831--836 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [59]) Overfull \hbox (4.48064pt too wide) in paragraph at lines 874--877 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [60]) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [61]) (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8 A4A36.pygtex [62]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C 9070A.pygtex [63]) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C 9070A.pygtex) [64] (./_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [65]) (./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex [66]) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1321--1323 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1365--1369 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [67]) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [68] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C 9070A.pygtex [69]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [70]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C 9070A.pygtex) [71] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C 9070A.pygtex [72]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C 9070A.pygtex) [73] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C 9070A.pygtex [74]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C 9070A.pygtex) [75] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C 9070A.pygtex [76]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 434--435 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [77]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex [78]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [79]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [80] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [81]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [82]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [83] (./_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [84] (./_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [85] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [86]) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1124--1128 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [87] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [88]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [89]) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [91]) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) [92] (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93]) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [94]) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (0.78606pt too wide) in paragraph at lines 1682--1685 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [96]) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1897--1901 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score Overfull \hbox (32.852pt too wide) in paragraph at lines 1966--2010 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99] [100]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [101]) (./_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [102]) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7291659349564D1AF91AD63517FDDE767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [103]) (./_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A9BF9BE7E29EF854A32E7BD4E79E346E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [104]) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 2274--2275 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [105]) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [108]) (./_minted-Tutorial/034BEABC04AF21423AA043E0986724A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [109]) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [110]) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [111]) (./_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [112] (./_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8B04CCF5A253EA893E0D643775A806A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [113]) (./_minted-Tutorial/38FD553026F1DCA254B4E8289D036D8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E03A76801FF279689473D2E5A1B193F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [114]) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [115]) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F63834565B18947B52E7892E30EC01B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [116]) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [117] (./Tutorial/chapter_blast.tex Chapter 7. [118] (./_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [119]) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [120]) [121] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C 9070A.pygtex [123]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 474. ) [124] [125 <./images/BlastRecord.png>] [126 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [127] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [128]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [131] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [136]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [139] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [141]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [142] [143] (./Tutorial/chapter_entrez.tex Chapter 9. [144] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [145] (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [146]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [147]) (./_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [148]) (./_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [149] (./_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [150] [151]) (./_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8 A4A36.pygtex [152]) (./_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [153]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [154]) (./_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [155]) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C 9070A.pygtex) [156] (./_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C 9070A.pygtex [157]) (./_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [158] (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [159]) (./_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [160] (./_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C 9070A.pygtex [161]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [162]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [163]) (./_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [164] (./_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [165]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [166]) (./_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [167]) (./_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [168] (./_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7516DA4BD78D0A0E4F2C69502DE8DBBC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8 A4A36.pygtex [169]) (./_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8 A4A36.pygtex [170]) (./_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [171] (./Tutorial/chapter_uniprot.tex Chapter 10. (./_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [172] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [173]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C 9070A.pygtex [174]) (./_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [175]) (./_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C 9070A.pygtex [176]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [177] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 362--363 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [178]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 405--406 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [179]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [180]) (./_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [181] (./Tutorial/chapter_pdb.tex Chapter 11. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [182]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [183] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [184]) (./_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [185] Overfull \hbox (13.022pt too wide) in paragraph at lines 263--265 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [186] [187 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [188] (./_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [189] (./_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [190]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [191]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [192] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [193]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [194]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [195]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [196] Overfull \hbox (42.26714pt too wide) in paragraph at lines 953--957 \OT1/cmr/m/n/10 breaks and dis-or-dered residues and atoms as de-scribed above are han-dled cor-rectly. \OT1/cmtt/m/n/10 structure[]rebuild[]test(entity) Overfull \hbox (3.8904pt too wide) in paragraph at lines 973--993 [][] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [197]) LaTeX Warning: Command \r invalid in math mode on input line 1046. (./_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [198] (./_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [199] [200] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [201] (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [202]) [203] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [204])) [205] (./Tutorial/chapter_phylo.tex Chapter 13. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [206]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [207] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [208 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [209 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [210]) (./_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. [211] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [212 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [213] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [214] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [215] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [216]) [217] (./Tutorial/chapter_motifs.tex Chapter 14. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [218]) (./_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [219]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [220] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C 9070A.pygtex [221]) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [222]) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C 9070A.pygtex [223]) (./_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [224]) (./_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [225]) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [226] (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [227]) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C 9070A.pygtex [228]) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 602--605 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [229]) (./_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C 9070A.pygtex [230]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [231] [232]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA78267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [233]) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [234]) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [235]) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [236]) (./_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [237] (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [238]) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [239]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [240]) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [241] (./_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C 9070A.pygtex) [242] (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [243]) [244] (./Tutorial/chapter_cluster.tex Chapter 15. [245] [246] [247] [248] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [249]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [250] [251] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [252] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [253] [254] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [255] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [256] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [257]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [258] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [259] Overfull \hbox (106.77225pt too wide) in paragraph at lines 653--655 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [260] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [261] Overfull \hbox (25.39864pt too wide) in paragraph at lines 737--748 [] [262] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [263] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [264] (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [265] Overfull \hbox (106.77225pt too wide) in paragraph at lines 927--929 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [266]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 984--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [267] (./Tutorial/chapter_learning.tex Chapter 16. [268] (./_minted-Tutorial/8B3B5AF56E90E069FAEF17DB5597747067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [269]) (./_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [270]) [271] (./_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [272]) Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 279. [273] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 287. (./_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 299. (./_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [274]) (./_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [275])) [276] (./Tutorial/chapter_graphics.tex Chapter 17. [277] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8 A4A36.pygtex [278]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8 A4A36.pygtex [279 <./images/plasmid_linear.png (PNG copy)>]) [280 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8 A4A36.pygtex [281]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8 A4A36.pygtex [282] [283 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8 A4A36.pygtex [284] [285 <./images/GD_sigils.png>] [286 <./images/GD_sigil_arrow _shafts.png>] [287 <./images/GD_sigil_arrow_heads.png>] [288]) Excluding 'htmlonly' comment. [289 <./images/plasmid_linear_nice.png (PNG copy) >] [290 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [291]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [292]) Excluding 'htmlonly' comment. [293 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [294]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [295] Excluding 'htmlonly' comment. [296 <./image s/three_track_cl.png>] [297 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [298] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [299] [300 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8 A4A36.pygtex [301]) Excluding 'htmlonly' comment.) [302] (./Tutorial/chapter_kegg.tex Chapter 18. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [303] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8 A4A36.pygtex [304]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C 9070A.pygtex)) [305] (./Tutorial/chapter_phenotype.tex Chapter 19. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [306] (./_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [307]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [308]) (./_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [309]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [310] (./Tutorial/chapter_cookbook.tex Chapter 20. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8 A4A36.pygtex [311]) (./_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [312] (./_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8 A4A36.pygtex [313]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8 A4A36.pygtex) [314] (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8 A4A36.pygtex [315]) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8 A4A36.pygtex) [316] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 452--456 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 473--475 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . [317] (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8 A4A36.pygtex [318]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8 A4A36.pygtex [319]) [320] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8 A4A36.pygtex [321]) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [322] (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [323] (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8 A4A36.pygtex [324]) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C 9070A.pygtex [325]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8 A4A36.pygtex) Excluding 'htmlonly' comment. [326] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1114--1117 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [327 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [328 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [329 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8 A4A36.pygtex [330]) Excluding 'htmlonly' comment. (./_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8 A4A36.pygtex [331 <./images/dot_plot_scatter.png>]) Excluding 'htmlonly' comment. [332 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex [333]) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1523--1524 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . (./_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [334] (./_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8 A4A36.pygtex [335]) (./_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [336]) (./_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A3687DE99B121F342703021A11AC3AB867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A63394593860DFB229C6A3AEEAB5A367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1696--1697 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [337]) (./_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [338] (./Tutorial/chapter_testing.tex Chapter 21. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [339] (./_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [340]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [341] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8 A4A36.pygtex [343]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [344] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [345] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 42--44 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} [346] (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [347] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 196--197 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8 A4A36.pygtex [348]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [349] (./Tutorial/chapter_contributing.tex Chapter 23. [350] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [351]) [352] (./Tutorial/chapter_appendix.tex Chapter 24. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8 A4A36.pygtex [353]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [354] [355] [356] [357] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_learning.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_advanced.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (358 pages, 2489179 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- LaTeX Warning: Reference `sub:The-Structure-object' on page 4 undefined on inpu t line 335. [4] [5] LaTeX Warning: Reference `cap:SMCRA' on page 6 undefined on input line 548. [6] [7 <./images/smcra.png (PNG copy)>] [8] LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 750. LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 779. LaTeX Warning: Reference `sub:Analysis' on page 9 undefined on input line 821. [9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 157300 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 159026 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1350--1358 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 159026 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/python-biopython-1.78+dfsg/Doc' make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.9 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:232: set -e; \ mkdir -p /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home; \ mkdir -p /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/Tutorial /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Doc/examples /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc; \ cp -a Tests /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build; \ cd /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home python3.9 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Can't setFont(Times-Roman) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:403: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray training_outputs = array( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py:411: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray training_states = array( ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -mt_mode,-sorthits,-sorthsps,-subject_besthit) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ rpstblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -mt_mode,-sorthits,-sorthsps) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py:477: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn( ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_DSSP ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match warnings.warn(err) /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py:250: UserWarning: Invalid mmCIF file use --verbose option to see errors warnings.warn(err) ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_Polypetide ... ok test_PDB_SMCRA ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py:126: BiopythonDeprecationWarning: Bio.SubsMat has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.substitution_matrices as a replacement, and contact the Biopython developers if you still need the Bio.SubsMat module. warnings.warn( ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2309: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( ok test_geo ... ok test_kNN ... ok test_lowess ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__init__.py:11: BiopythonDeprecationWarning: Bio.Statistics has been deprecated, and we intend to remove it in a future release of Biopython. warnings.warn( ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_raxml_tool ... ok test_samtools_tool ... ok test_seq ... /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py:2334: BiopythonWarning: Partial codon, len(sequence) not a multiple of three. Explicitly trim the sequence or add trailing N before translation. This may become an error in future. warnings.warn( ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Crystal docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.FSSP docstring test ... ok Bio.FSSP.FSSPTools docstring test ... ok Bio.FSSP.fssp_rec docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.Statistics docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 517 tests in 288.628 seconds Skipping any tests requiring internet access Python version: 3.9.6 (default, Jun 29 2021, 10:19:25) [GCC 10.3.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-HywzjnpW mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' dh_auto_install install -d /<>/python-biopython-1.78\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.9 --dest-dir /<>/python-biopython-1.78\+dfsg/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/python-biopython-1.78+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/Interfaces.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MafIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MauveIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/MsfIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/NexusIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/mast.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/jaspar/__pycache__/db.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/meme.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/transfac.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/xms.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/alignace.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/xms.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/matrix.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/alignace.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/pfm.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/meme.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/thresholds.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/mast.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/minimal.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/clusterbuster.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/__pycache__/transfac.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/pfm.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/thresholds.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/matrix.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/minimal.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/GOA.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniProt/__pycache__/GOA.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2module.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/Restriction.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/PrintFormat.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Restriction/__pycache__/Restriction.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Dom.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Des.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Residues.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Raf.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Des.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Hie.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Raf.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Cla.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Residues.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/__pycache__/Dom.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Hie.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SCOP/Cla.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/kNN.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Scanner.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/Record.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/utils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Scanner.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/GenBank/utils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/IUPACData.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/IUPACData.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/CodonTable.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/__pycache__/SCOPData.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/SCOPData.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Data/CodonTable.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/pm_fitting.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/__pycache__/phen_micro.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Application/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/_utils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqFeature.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/TRANS -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/HOXD70 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Prank.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/_aligners.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/__pycache__/AlignInfo.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Align/AlignInfo.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/File.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__pycache__/lowess.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Statistics/lowess.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqRecord.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/TogoWS/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Compass/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/NOEtools.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/xpktools.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/NOEtools.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NMR/__pycache__/xpktools.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/LogisticRegression.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_utils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hit.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/_base.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_model/__pycache__/query.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/BlatIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonseq.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/chisq.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonseq.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/codonalignment.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/chisq.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/codonalign/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Primer3.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/Applications.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Primer3.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/Applications.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/UniGene/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.h -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/cluster.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prosite.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Enzyme.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/__pycache__/Prodoc.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Record.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/Applications.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIWWW.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Applications.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/__pycache__/NCBIXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/CelFile.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/CelFile.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Affy/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/lcc.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/Record.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Geo/__pycache__/Record.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/CAPS/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Newick.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_utils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NeXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/Consensus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/BaseTree.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Newick.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NewickIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/CDAOIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_io.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NeXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/Consensus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/PhyloXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/__pycache__/NexusIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/_io.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Alphabet/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nexus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Nodes.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/Trees.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/StandardData.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/StandardData.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Trees.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nexus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Nexus/__pycache__/Nodes.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Pathway/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Comparative.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/Distribution.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/KGML_vis.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Comparative.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/Distribution.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/psw.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/dnal.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/dnal.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Wise/__pycache__/psw.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/KeyWList.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SwissProt/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/Seq.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/bgzf.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/kNN.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/_utils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/MaxEntropy.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/File.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/pairwise2.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqFeature.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/LogisticRegression.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/NaiveBayes.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/__pycache__/SeqRecord.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/MaxEntropy.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmcifio.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Structure.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NACCESS.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Dice.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PSEA.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Superimposer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBList.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Selection.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/internal_coords.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_rebuild.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/DSSP.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PDBParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Atom.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.c -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/vectors.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/PICIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/SCADIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Entity.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBList.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_data.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/FragmentMapper.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NeighborSearch.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureAlignment.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIFParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/HSExposure.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/StructureBuilder.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PSEA.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Structure.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ic_rebuild.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Atom.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Superimposer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Chain.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Residue.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/internal_coords.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PICIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Model.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBExceptions.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Polypeptide.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/NACCESS.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/mmcifio.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/ResidueDepth.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/PDBIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Dice.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Selection.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/Entity.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/SCADIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/vectors.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/DSSP.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Model.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/HSExposure.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Residue.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/ic_data.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/PDB/Chain.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Crystal/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/bgzf.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Medline/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Seq.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/NaiveBayes.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/MarkovModel.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/fssp_rec.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/FSSPTools.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/fssp_rec.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/FSSPTools.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/FSSP/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/Parser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/DTDs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/XSDs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Entrez/__pycache__/Parser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Phd.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/Ace.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Ace.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/Sequencing/Phd.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Utilities.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/__pycache__/Trainer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Trainer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/Utilities.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/FreqTable.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/pairwise2.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SwissIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/IgIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/Interfaces.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PirIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/FastaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PhdIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AceIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/TabIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/NibIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/AbiIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/QualityIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/GckIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SffIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/PdbIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/REST.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/REST.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Map/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__init__.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/BioSeq.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeq.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/BioSeqDatabase.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/Loader.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/__init__.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/__pycache__/DBUtils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/Loader.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/BioSQL/DBUtils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple_short.xmfa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Mauve/simple.xmfa.backbone -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Mauve creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/opuntia.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/cw02.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/promals3d.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/odd_consensus.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/hedgehog.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/temp horses.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Clustalw/protein.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Clustalw creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/Arnt.sites -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.adh.classic.oops.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/abdb.xms -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/REB1.pfm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/transfac.dat -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/minimal_test.meme -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/SRF.pfm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/alignace.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/clusterbuster.pfm.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/meme.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/motifs/MA0056.1.transfac -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/motifs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/ExtendedPhylip/primates.phyx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/ExtendedPhylip creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/goa_yeast.gaf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Dialign_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Enzyme.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDBList.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phd.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SnapGene.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta8.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta9.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/meta2.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MetaTool/Meta6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_File.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_ClustalIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMGeneral.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/testDom.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/raftest.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SCOP/scopseq-test creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-a.xdna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-b.xdna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Xdna/sample-c.xprt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Xdna copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align_substitution_matrices.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Gck/artificial.gck -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Gck copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_origin_no_end.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/extra_keywords.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/GU949562.1.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/dbsource_wrap.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/gbvrl1_start.seq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pri1.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/iro.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485_output.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_structured_comment.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/one_of.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_product.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_version.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/KF527485.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/negative_location.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.ffn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq2.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/no_end_marker.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.faa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/empty_accession.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.fna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/blank_seq.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/arab1.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/protein_refseq.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/DS830848.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502_output.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/pBAD30.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NT_019265.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_000932.faa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tls_KDHP01000000.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/1MRR_A.gp -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978_output.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/origin_line.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/EU851978.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/tsa_acropora.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/HM138502.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/noref.gb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GenBank/NC_005816.tsv -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GenBank copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/out.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Saf/saf1.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Saf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PQR.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/fake.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test.fsa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3100.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/3730.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/test_data -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/310.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/empty.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Abi/no_smpl1.ab1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Abi copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_internal_coords.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlates.csv -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plates.csv -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate_2.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/BadPlate.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/SmallPlate.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/phenotype/Plate_2.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/phenotype copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_wise.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/IntelliGenetics creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaEd2Dlo creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_004.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_35_002.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_002.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_005.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_003.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/mirna.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_001.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_001.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_004.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_003.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_002.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_34_005.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/psl_35_001.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blat/pslx_34_002.pslx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blat creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/cow.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/pig.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/bsubtilis.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/hg38.chrom.sizes -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Align/ecoli.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Align copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_FragmentMapper.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_NibIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Fasttree_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsDistribution.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EmbossPrimer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Astral.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Raf.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Dom.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_yn00.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/B_nuc.pir -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMA_nuc.pir -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/clustalw.pir -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/Cw_prot.pir -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NBRF/DMB_prot.pir -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NBRF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Exposure.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Muscle_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_networkx.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.sample -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2_no_C.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignInfo.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_geo.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype_fit.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/pairwise2_testCases.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Compass.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Blast_Record.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_LogisticRegression.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest2 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Compass/comtest1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Compass creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001422.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802lc.fna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/multi.fna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802x.fna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/GFF/NC_001802.fna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/GFF creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/noed.xpk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NMR/out_example.xpk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NMR creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/W_prot.msf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/msf/DOA_prot.msf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/msf copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_psw.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBIXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Chi2.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Ace.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro3.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/drosophilla.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl4.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro5.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro4.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl5.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_pro.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/adh.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro1.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl3.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl2.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_id -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/nucl1.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/pro2.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/codonalign/egfr_nucl.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/codonalign copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenomeDiagram.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MafIO_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniProt_GOA.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prodoc.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_QCPSuperimposer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_SMCRA.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_RCSBFormats.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Scop.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water2.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK_full.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/alignret.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/internal_oligo.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/short.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_forward.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/no_oligo.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/needle_asis.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.psearch -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/water.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/bac_find.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/cds_reverse.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_simple.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/matcher_pair.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Emboss/NirK.primer3 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Emboss creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Eca.1.2425.data -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Mdm_partial.data -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/UniGene/Hs.2.data -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/UniGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Affy.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Consensus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/cor6_6.db -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Pathway.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_FastaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PQR/1A80.pqr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PQR copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Dice.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_CDAO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/biosql.ini.appveyor -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lactate.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/valine.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/lipoprotein.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Enzymes/proline.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Enzymes creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/cyano.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cluster/README -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cluster copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_HMMCasino.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Polypetide.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_MauveIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SVDSuperimposer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_write.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_codonalign.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Medline.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/search_tests_common.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise2.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_cellosaurus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Crystal.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_result.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_wait.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_pcr.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_disco.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mirna.tab -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_short_empty.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_actin.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/wnts.xml.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/mock_orchid.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Blast copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CAPS.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v3_example.CEL -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Affy/affy_v4_example.CEL -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Affy copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SubsMat.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/consed_sample.ace -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/seq.cap.ace -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Ace/contig1.ace -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Ace copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SffIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_taxa.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/phenoscape.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/sets.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees-uris.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/edgelabels.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/trees.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/tolweb.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/meta_types.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/characters.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/timetree.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/treebase-record.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/taxa.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeXML/nexml.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ColorSpiral.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/run_tests.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_PDBIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Des.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NMR.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_write.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Disordered.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/cac81.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/bamii.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/crei.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/taqi.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.htm -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/foki.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Rebase/pvuii.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Rebase copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Probcons_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_qblast.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_translate.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/loveliesbleeding.pro -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output005.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output009.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/centaurea.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output001.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/sweetpea.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output012.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output014.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output013.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output003.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lupine.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output007.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/README -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/tc_out.msf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f002 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster.pro -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/fa01 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/lavender.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output004.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f001 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/wisteria.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output002.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output016.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rosemary.pro -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/elderberry.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/rose.pro -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/flowers.pro.gz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output006.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output008.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output011.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/dups.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output015.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/output010.m10 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/f003 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/phlox.nu -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Fasta/aster_no_wrap.pro -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Fasta copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Uniprot.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_PhylipIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_KDTree.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/requires_internet.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/tmpdirprankmsaip8O2Y copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_legacy.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_platform.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM645.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_series.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM804.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_family.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM691.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSM700.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/GSE16.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_dual.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Geo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_DSSP.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_CodonTable.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsChromosome.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsBitmaps.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_FastaIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ProtParam.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ExPASy.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/CDAO/test.cdao -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CDAO copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_ClustalOmega_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KEGG.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Nexus.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_motifs.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqRecord.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_kNN.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/repeat.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/NeuralNetwork/enolase.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/NeuralNetwork creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/simple.sth -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Stockholm/funny.sth -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_nographics.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_FSSP.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/bats.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test.new -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/codonposset.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/int_node_labels.nwk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/test_Nexus_input.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nexus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_StructureAlignment.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/BWA creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.svg -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/multi_bar.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_7.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/square_test.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/README -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/labels_default.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/simple_bar.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/random_organism.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_transparency.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_linear.svg -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/line_graph.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.eps -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/organism.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_widths.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_region_circular.svg -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_original.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_original.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/spiral_test.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/scatter_test_1.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map01100_transparency.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/map03070_colors.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Graphics copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Application.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Wise creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_refresh.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2_sorted.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam2.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam2.sam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/bam1_sorted.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/readme.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/sam1.sam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.bam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1_header.sam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SamBam/ex1.sam -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SamBam creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/protein_example.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/dna_example.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/rna_example.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/corrupt_example2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SeqXML/global_species_example.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_Superimposer.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_samtools_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Hie.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp012 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P97881.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist2.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni003 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni002 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0A186.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/keywlist.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/uni001 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P60137.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P84001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp011 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp016 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp010 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp003 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/F2CXE6.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/README -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp007 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp001 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp013 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp002 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp008 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp006 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp005 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/H2CNN8.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.rdf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/Q13639.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp015 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.gff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.list -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/R5HY77.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/sp009 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/O23729.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/P0CK95.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SwissProt/multi_ex.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Tutorial.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TogoWS.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Insdc.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/paired.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/greek.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Roche copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phyml_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Prank_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Seq_objs.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/output.best.fas -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/big.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2line.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/README -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo2.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/haplo3.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3line.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c2space.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PopGen/c3space.gen -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PopGen copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Mafft_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_NeXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_seq.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Phylo_matplotlib.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/.coveragerc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/allx.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/HHsuite creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDBList.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_QCPSuperimposer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Prank_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Scop.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NMR.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ProtParam.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PhyloXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise_aligner.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_kNN.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Residues.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Mafft_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_wise.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_geo.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_legacy.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_LogisticRegression.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBIXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_bgzf.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Cluster.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Crystal.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_FSSP.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqRecord.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_KDTree.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_nographics.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Affy.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_write.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Cla.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MafIO_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KEGG.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ExPASy.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBITextParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_vectors.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMGeneral.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_CDAO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_SMCRA.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_model.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SubsMat.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Raf.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype_fit.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_pairwise2_no_C.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Seq_objs.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Uniprot.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Dice.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Clustalw_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Polypetide.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_MarkovModel.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Des.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SffIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_codeml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenBank.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/common_BioSQL_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prodoc.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_networkx.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Muscle_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Compass.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Superimposer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_lowess.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Enzyme.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_RCSBFormats.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PQR.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Astral.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_NACCESS.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_cellosaurus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqFeature.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Exposure.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_samtools_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignInfo.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EMBL_unittest.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/pairwise2_testCases.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_parser.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Dialign_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsGeneral.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_features.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NCBI_qblast.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Ace.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/seq_tests_common.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_yn00.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_File.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_codonalign.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_seq.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_translate.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Gck.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TCoffee_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_Disordered.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GenomeDiagram.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsDistribution.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_HMMCasino.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniProt_GOA.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_NeXML.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SwissProt.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Tutorial.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CodonTable.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PAML_baseml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/search_tests_common.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite2.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Blast_Record.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_DSSP.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Wise.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Emboss.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Probcons_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_raxml_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Restriction.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phyml_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_BWA_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KeyWList.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TreeConstruction.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_PDBIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_convert.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqUtils.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_EmbossPrimer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_UniGene.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_GraphicsChromosome.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Dom.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Consensus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Nexus.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_PDB_internal_coords.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_align_substitution_matrices.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_TogoWS.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Application.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_KGML_graphics.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SCOP_Hie.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_psw.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SVDSuperimposer.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_phenotype.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Fasttree_tool.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Pathway.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_NaiveBayes.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_motifs_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_prosite1.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/requires_internet.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Chi2.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Medline.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Phd.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_ColorSpiral.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_Entrez_online.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_SeqIO_write.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_AlignIO.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/__pycache__/test_CAPS.cpython-39.pyc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GraphicsGeneral.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NaiveBayes.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/InterProScan/test_001.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBITextParser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/EDD_RAT.dat -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/bt001 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Registry/seqs.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Registry creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/yn00 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/model creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/bad_results.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/alignment.phylip -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/longnames.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Alignments creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/species.tree -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/bad.tree -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Trees/lysin.trees -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/gen_results.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad3.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/yn00 creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/species.tree -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/bad2.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PAML/Control_files/baseml.ctl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_littleendian.nib -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_bigendian.nib -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even_littleendian.nib -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_odd_bigendian.nib -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Nib/test_even.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Nib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez_parser.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Wise.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KGML_graphics.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_KeyWList.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/upgma.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/msa.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/adam_refs.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj_min.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/test.log -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/trees.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/majority_ref.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/pars3.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/nj.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/TreeConstruction/strict_refs.tre -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Cla.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_EmbossIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00165.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00107.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00432.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00159.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00488.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Prosite/ps00546.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Prosite copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_phenotype.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_raxml_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1AS5.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/3JQH.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG_noheader.dssp -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4ZHL.mmtf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/alignment_file.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.xyzr -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/disordered.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/lib_10_z_5.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Miller_RASA.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/a_structure.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.asa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1SSU_mod.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2OFG.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Sander_RASA.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/occupancy.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/d256ba_.ent -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.mmtf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1LCD.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2n0n_M1.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/Wilke_RASA.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.dssp -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/ions.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4CUP.mmtf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/4Q9R_min.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1MOM_min.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2BEG.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/header.pdb -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/2XHE.cif -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PDB/1A8O.rsa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PDB copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/common_BioSQL_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TCoffee_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_codeml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_PdbIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_UniGene.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/README.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_QualityIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Gck.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_lowess.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqFeature.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result2.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result1.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Medline/pubmed_result3.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Medline creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-e.dna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/sample-d.dna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SnapGene/pFA-KanMX4.dna -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_GenBank.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_NACCESS.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_bgzf.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/SC10H5.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DS830848.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/epo_prt_selection.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/U87107.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/A04195.imgt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/RepBase23.02.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AAA03323.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/DD231055_edited2.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/xx_after_co.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/patents.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/101ma_no_coords.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/AE017046.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/embl_with_0_line.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/location_wrap.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/Human_contigs.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/EMBL/TRBG361.embl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/EMBL copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SwissProt.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/FSSP/1cnv.fssp -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/FSSP copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Entrez.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink4.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost3.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink3.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary3.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary7.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/journals.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch7.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/espell.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/ncbi_mim.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink5.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo4.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink8.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/einfo3.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary5.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch8.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch5.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink6.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/taxonomy.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed4.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/epost1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed3.html -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/biosample.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/efetch_schemas.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/egquery1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch4.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary4.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/protein.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/nucleotide1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed7.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch1.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed5.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch6.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary9.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary8.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/elink7.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/pubmed6.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esearch3.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Entrez/esummary6.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Entrez copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_features.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqUtils.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_MMCIFIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite1.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_align.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_SeqXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_pairwise_aligner.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Restriction.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_MarkovModel.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna2.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/hennigian.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/reference_dna.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced2.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/random.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential2.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/horses.tree -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/interlaced.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phylip/sequential.phy -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phylip copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PAML_baseml.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/corrupt.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bug2453.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_test.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/bundle_without_target.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/invalid.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/length_coords_mismatch.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/humor.maf -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/cnksr3.fa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/wrong_version.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/MAF/unfinished.idx -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/MAF copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SCOP_Residues.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_vectors.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Emboss.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PDB_parse_pdb_header.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Clustalw_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/seq_tests_common.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_AbiIO.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_blat_psl.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_AlignIO_convert.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_Cluster.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_count.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAADistrib.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/protein_freq.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/SubsMat/aaDistrib.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BWA_tool.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_model.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_EMBL_unittest.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd1 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd2 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_454 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Phd/phd_solexa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Phd creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_no_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_escape.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/tricky.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/zero_length.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_spaces.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_93.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_faked.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_null.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_tab.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq.gz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_short_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_example.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_long_qual.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.qual -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_del.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_space.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/solexa_faked.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_faked.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_qual_vtab.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_tabs.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_diff_ids.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/error_double_seq.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/Quality/example_dos.fastq -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_prosite2.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_TreeConstruction.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_PhyloXML.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_SeqIO_Xdna.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/apaf.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/example.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/made_up.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/distribution.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/PhyloXML/bcl_2.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PhyloXML creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.irregular -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.sample -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map00950.rea -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/gene.sample -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko03070.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko01100.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map03070.png -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.4letter -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/map01100.png -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00010.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/compound.irregular -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.new -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/ko00253.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/KEGG/enzyme.sample -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/KEGG copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Tests/test_NCBI_BLAST_tools.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/cache creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/plugins/linux creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/methods creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.t_coffee/mcoffee creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/matplotlib creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/home/.cache/matplotlib/fontlist-v330.json -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/home/.cache/matplotlib creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_blast.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_popgen.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cluster.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_advanced.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_testing.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_motifs.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_appendix.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_pdb.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_align.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_graphics.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_seqio.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_introduction.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_contributing.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_entrez.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_kegg.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_learning.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_searchio.aux -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_phylo.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/Tutorial creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.aln -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ACT_example.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/clustal_run.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Plates.csv -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blat.psl -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/swissprot.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/getgene.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/PF05371_seed.sth -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/my_blast.xml -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ls_orchid.gbk.gz -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_dictionary.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/alpha.faa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/simple.dnd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/www_blast.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/m_cold.fasta -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples creating /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/noed.xpk -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/nmr/simplepredict.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/fasta_iterator.py -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/opuntia.dnd -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/ec_5.4.2.2.txt -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/examples/beta.faa -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples copying /<>/python-biopython-1.78+dfsg/.pybuild/cpython3_3.9/build/Doc/Tutorial.tex -> /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/mast.py to mast.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/meme.py to meme.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/transfac.py to transfac.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/xms.py to xms.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/alignace.py to alignace.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/pfm.py to pfm.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/matrix.py to matrix.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/motifs/minimal.py to minimal.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Des.py to Des.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/kNN.py to kNN.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/GenBank/utils.py to utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Application/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/File.py to File.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Statistics/lowess.py to lowess.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Compass/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/_index.py to _index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/Applications.py to Applications.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Geo/Record.py to Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/_io.py to _io.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/psw.py to psw.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Wise/dnal.py to dnal.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Structure.py to Structure.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Dice.py to Dice.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Selection.py to Selection.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Atom.py to Atom.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/vectors.py to vectors.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Entity.py to Entity.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Model.py to Model.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Residue.py to Residue.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/PDB/Chain.py to Chain.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/bgzf.py to bgzf.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Medline/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Seq.py to Seq.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/pairwise2.py to pairwise2.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/_index.py to _index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/REST.py to REST.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/Loader.py to Loader.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phd.py to test_Phd.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_File.py to test_File.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PQR.py to test_PQR.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_wise.py to requires_wise.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_geo.py to test_geo.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Compass.py to test_Compass.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_psw.py to test_psw.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Ace.py to test_Ace.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Affy.py to test_Affy.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Medline.py to test_Medline.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/run_tests.py to run_tests.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NMR.py to test_NMR.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_translate.py to test_translate.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/requires_internet.py to requires_internet.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_motifs.py to test_motifs.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_kNN.py to test_kNN.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Application.py to test_Application.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_seq.py to test_seq.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Wise.py to test_Wise.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_raxml_tool.py to test_raxml_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_lowess.py to test_lowess.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_align.py to test_align.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/getgene.py to getgene.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-39.pyc byte-compiling /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-39.pyc running install_egg_info Copying biopython.egg-info to /<>/python-biopython-1.78+dfsg/debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.78.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' dh_install -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/Bio debian/tmp/usr/lib/python3.9/dist-packages/biopython-1.78.egg-info debian/python3-biopython//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/python3-biopython-sql//usr/lib/python3.9/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.9/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.9/dist-packages/ install -d debian/.debhelper/generated/python3-biopython-sql rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' dh_installdocs -i dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc. If the default is wrong, please use --doc-main-package install -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/biopython-tutorial install -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.9/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /<>/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/<>/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' grep: ../Bio/__init__.py: No such file or directory File "", line 1 ; print('dev' if 'dev' in __version__ else __version__) ^ SyntaxError: invalid syntax ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/<>/python-biopython-1.78+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython3-biopython-sql install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/changelog debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/changelog debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102ubuntu4 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:107: skipping package: python-biopython-doc D: dh_python3 debhelper:152: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.9/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.78.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:142: trying to find dependency for numpy (python=None) D: dh_python3 depends:275: D={'python3 (<< 3.10)', 'python3:any', 'python3 (>= 3.9~)', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package python3-biopython-sql... D: dh_python3 fs:49: moving files from debian/python3-biopython-sql/usr/lib/python3.9/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython-sql D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython install -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1630339141 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-biopython cd debian/python-biopython-doc cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/<>/python-biopython-1.78+dfsg' cd '/<>/python-biopython-1.78+dfsg' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default-pyg-prefix.pygstyle usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default.pygstyle usr/share/doc/python-biopython-doc/Doc/api/conf.py usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/biopdb_faq.tex usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/doc.tex usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt usr/share/doc/python-biopython-doc/Doc/examples/getgene.py usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/Align/cow.fa usr/share/doc/python-biopython-doc/Tests/Align/hg38.chrom.sizes usr/share/doc/python-biopython-doc/Tests/Align/pig.fa usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/README.txt usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2012L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2216L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2221L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2230_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/Cluster/cyano.txt usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/EMBL/hla_3260_sample.imgt usr/share/doc/python-biopython-doc/Tests/EMBL/kipo_prt_sample.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/emboss_pair_aln_full_blank_line.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/esummary9.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed5.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed6.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_fuzzy.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_accession.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/empty_version.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_structured_comment.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhsearch.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/allx.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhpred_9590198.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out chmod a-x usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_long-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.xyzr usr/share/doc/python-biopython-doc/Tests/PDB/1AS5.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2n0n_M1.pdb usr/share/doc/python-biopython-doc/Tests/PDB/3JQH.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.cif usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/PDB/lib_10_z_5.txt usr/share/doc/python-biopython-doc/Tests/PQR/1A80.pqr usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SnapGene/pFA-KanMX4.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-d.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-e.dna usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/P0A186.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0CK95.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60137.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P97881.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/R5HY77.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp003 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp008 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp010 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp011 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/UniProt/gene_association.goa_yeast.1.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gpa.59.gpa usr/share/doc/python-biopython-doc/Tests/UniProt/gp_information.goa_yeast.28.gpi usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophilla.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/common_BioSQL_online.py usr/share/doc/python-biopython-doc/Tests/motifs/abdb.xms usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.INO_up800.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.adh.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.farntrans5.classic.anr.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.psp_test.classic.zoops.xml usr/share/doc/python-biopython-doc/Tests/msf/DOA_prot.msf usr/share/doc/python-biopython-doc/Tests/pairwise2_testCases.py usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py chmod a-x usr/share/doc/python-biopython-doc/Tests/test_Affy.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Crystal.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_File.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NMR.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypetide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian gzip -9nf usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8A4A36.pygtex usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default-pyg-prefix.pygstyle usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default.pygstyle usr/share/doc/python-biopython-doc/Doc/api/conf.py usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/biopdb_faq.tex usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/doc.tex usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt usr/share/doc/python-biopython-doc/Doc/examples/getgene.py usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/Align/cow.fa usr/share/doc/python-biopython-doc/Tests/Align/hg38.chrom.sizes usr/share/doc/python-biopython-doc/Tests/Align/pig.fa usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/README.txt usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_006.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_007.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2012L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_blastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_psiblast_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2216L_tblastn_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2221L_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222L_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2222_blastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_002.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_003.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_004.txt usr/share/doc/python-biopython-doc/Tests/Blast/text_2230_blastp_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/Cluster/cyano.txt usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/EMBL/hla_3260_sample.imgt usr/share/doc/python-biopython-doc/Tests/EMBL/kipo_prt_sample.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/emboss_pair_aln_full_blank_line.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/esummary9.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed5.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed6.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_fuzzy.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_accession.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/empty_version.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_structured_comment.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhsearch.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/allx.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhpred_9590198.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out gzip -9nf usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_long-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.xyzr usr/share/doc/python-biopython-doc/Tests/PDB/1AS5.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2n0n_M1.pdb usr/share/doc/python-biopython-doc/Tests/PDB/3JQH.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.cif usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/PDB/lib_10_z_5.txt usr/share/doc/python-biopython-doc/Tests/PQR/1A80.pqr usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SnapGene/pFA-KanMX4.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-d.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-e.dna usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/P0A186.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0CK95.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60137.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P97881.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/R5HY77.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp003 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp008 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp010 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp011 usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/UniProt/gene_association.goa_yeast.1.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gpa.59.gpa usr/share/doc/python-biopython-doc/Tests/UniProt/gp_information.goa_yeast.28.gpi usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophilla.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/common_BioSQL_online.py usr/share/doc/python-biopython-doc/Tests/motifs/abdb.xms usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.INO_up800.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.adh.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.farntrans5.classic.anr.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.psp_test.classic.zoops.xml usr/share/doc/python-biopython-doc/Tests/msf/DOA_prot.msf usr/share/doc/python-biopython-doc/Tests/pairwise2_testCases.py usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py gzip -9nf usr/share/doc/python-biopython-doc/Tests/test_Affy.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Crystal.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_File.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NMR.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypetide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite1.py usr/share/doc/python-biopython-doc/Tests/test_prosite2.py usr/share/doc/python-biopython-doc/Tests/test_psw.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/<>/python-biopython-1.78+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>/python-biopython-1.78+dfsg' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>/python-biopython-1.78+dfsg' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e2a01bdb69872dec672a12c196d285ec844f5e31 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2/a01bdb69872dec672a12c196d285ec844f5e31.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2/a01bdb69872dec672a12c196d285ec844f5e31.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripvkdP_M debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripvkdP_M cat '/tmp/BfZx_yYLRF/stripvkdP_M' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripvkdP_M debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/e2/a01bdb69872dec672a12c196d285ec844f5e31.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyGTDH89 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyGTDH89 cat '/tmp/BfZx_yYLRF/objcopyGTDH89' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopyGTDH89 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8d2601691bc72eec6aebec148ad2a4cb1f722a87 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/2601691bc72eec6aebec148ad2a4cb1f722a87.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/2601691bc72eec6aebec148ad2a4cb1f722a87.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripYlkv9t debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripYlkv9t cat '/tmp/BfZx_yYLRF/stripYlkv9t' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripYlkv9t debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/8d/2601691bc72eec6aebec148ad2a4cb1f722a87.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyGxL7f6 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyGxL7f6 cat '/tmp/BfZx_yYLRF/objcopyGxL7f6' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopyGxL7f6 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 336a6515be23f8712f1182edba1584108c8110ac install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/6a6515be23f8712f1182edba1584108c8110ac.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/6a6515be23f8712f1182edba1584108c8110ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripHNaWDZ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripHNaWDZ cat '/tmp/BfZx_yYLRF/stripHNaWDZ' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripHNaWDZ debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/6a6515be23f8712f1182edba1584108c8110ac.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyKv8Uk3 chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyKv8Uk3 cat '/tmp/BfZx_yYLRF/objcopyKv8Uk3' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopyKv8Uk3 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 dfad1efa8faa714550e30f35c01c737720048f2f install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/ad1efa8faa714550e30f35c01c737720048f2f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/ad1efa8faa714550e30f35c01c737720048f2f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripdwx3Dl debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripdwx3Dl cat '/tmp/BfZx_yYLRF/stripdwx3Dl' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripdwx3Dl debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/df/ad1efa8faa714550e30f35c01c737720048f2f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyV2zroa chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyV2zroa cat '/tmp/BfZx_yYLRF/objcopyV2zroa' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopyV2zroa debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9614135543274fd037c992951688aa56b711355f install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96/14135543274fd037c992951688aa56b711355f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96/14135543274fd037c992951688aa56b711355f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripOCYEqR debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripOCYEqR cat '/tmp/BfZx_yYLRF/stripOCYEqR' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripOCYEqR debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/96/14135543274fd037c992951688aa56b711355f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopy9BMAbY chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopy9BMAbY cat '/tmp/BfZx_yYLRF/objcopy9BMAbY' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopy9BMAbY debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 19be151190e0b12d394fb4170be2b323d65f0f61 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/19/be151190e0b12d394fb4170be2b323d65f0f61.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/19/be151190e0b12d394fb4170be2b323d65f0f61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripcvQ6TM debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripcvQ6TM cat '/tmp/BfZx_yYLRF/stripcvQ6TM' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripcvQ6TM debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/19/be151190e0b12d394fb4170be2b323d65f0f61.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyw00KFF chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopyw00KFF cat '/tmp/BfZx_yYLRF/objcopyw00KFF' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopyw00KFF debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debugedit --build-id --build-id-seed=python3-biopython/1.78\+dfsg-5ubuntu1 debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debugedit: debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 863fffdc66982843de066bd76101952aff930af7 install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/3fffdc66982843de066bd76101952aff930af7.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/3fffdc66982843de066bd76101952aff930af7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/BfZx_yYLRF/stripPktSVr debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/stripPktSVr cat '/tmp/BfZx_yYLRF/stripPktSVr' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/stripPktSVr debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/86/3fffdc66982843de066bd76101952aff930af7.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopydt0B9q chmod --reference debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so /tmp/BfZx_yYLRF/objcopydt0B9q cat '/tmp/BfZx_yYLRF/objcopydt0B9q' > 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so' chmod --reference /tmp/BfZx_yYLRF/objcopydt0B9q debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm install -d debian/python-biopython-doc/DEBIAN install -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=19be151190e0b12d394fb4170be2b323d65f0f61 336a6515be23f8712f1182edba1584108c8110ac 863fffdc66982843de066bd76101952aff930af7 8d2601691bc72eec6aebec148ad2a4cb1f722a87 9614135543274fd037c992951688aa56b711355f dfad1efa8faa714550e30f35c01c737720048f2f e2a01bdb69872dec672a12c196d285ec844f5e31" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython chmod 0644 -- debian/python-biopython-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. install -d debian/.debhelper/scratch-space/build-python3-biopython dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-sql (in debian/python3-biopython-sql); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python-biopython-doc (in debian/python-biopython-doc); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Truncating usr/share/doc/python3-biopython/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/python3-biopython-sql/DEBIAN/control, package python3-biopython-sql, directory debian/python3-biopython-sql INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... Renaming python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.deb to python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.78\+dfsg-5ubuntu1_amd64.deb ../python3-biopython-dbgsym_1.78\+dfsg-5ubuntu1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python-biopython-doc/DEBIAN/control, package python-biopython-doc, directory debian/python-biopython-doc INFO: pkgstripfiles: waiting for lock (python3-biopython-sql) ... pkgstripfiles: Truncating usr/share/doc/python-biopython-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package python-biopython-doc (to save build time) dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb'. Searching for duplicated docs in dependency python3-biopython... symlinking changelog.Debian.gz in python3-biopython-sql to file in python3-biopython pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython-sql ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../python-biopython_1.78+dfsg-5ubuntu1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-08-30T16:11:55Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.78+dfsg-5ubuntu1_amd64.changes: -------------------------------------------------- Format: 1.8 Date: Mon, 30 Aug 2021 15:59:01 +0000 Source: python-biopython Binary: python-biopython-doc python3-biopython python3-biopython-sql Built-For-Profiles: noudeb Architecture: all amd64 Version: 1.78+dfsg-5ubuntu1 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: python-biopython-doc - Documentation for the Biopython library python3-biopython - Python3 library for bioinformatics python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Changes: python-biopython (1.78+dfsg-5ubuntu1) impish; urgency=medium . * Upgrade dependency on python3-renderpm from Suggests to Depends to fix test failure with python-reportlab 3.5.66 Checksums-Sha1: 56b347e47eeb26c85e9c725268be88bd89a1268a 14973796 python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 446b8c5f9df757b010a7ae639cc7e02db9edc9c5 14136 python-biopython_1.78+dfsg-5ubuntu1_amd64.buildinfo 92b306bb302c71dc12c819e2397ce69ad39f4a7e 261102 python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb 36c9da574ea0a31f071dc4db606732d642fd2f4a 26066 python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb fe561f2f1ad3f46fdf3cb397a930172f5ada52e3 1445764 python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Checksums-Sha256: d7a379f71c77f16d5f361d5ff1ae6f5bdb154c3494fab19b3464a4aa75496857 14973796 python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 7fad76847f01743cf0a3784dfa420502396bcc743c4e54d7c0011cf0689c5777 14136 python-biopython_1.78+dfsg-5ubuntu1_amd64.buildinfo 1b387ae35d9f61743b2a4bf1e98cb9fd05bfb2edce6f5952318351eade947ca9 261102 python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb 71c38fc3a8991c34b6a8bd08bd822657cca6a079ef0370e7ec84bf4721263d0c 26066 python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb 7a596eef8918cea501a73168852cc0a1e4f59db6f10b90c5065698b611fc00c3 1445764 python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Files: e0ec91db842fdd9654db9e04fccb3f4a 14973796 doc optional python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 2695cfd7c0190ae5f878ccb6717d382e 14136 python optional python-biopython_1.78+dfsg-5ubuntu1_amd64.buildinfo 271a35887708fe9464a6419375055653 261102 debug optional python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb f167ebbe66228a1f59ee16f0c18495ad 26066 python optional python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb 26343e398e0efefb107161cef13b9f7d 1445764 python optional python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-biopython Binary: python-biopython-doc python3-biopython python3-biopython-dbgsym python3-biopython-sql Architecture: all amd64 Version: 1.78+dfsg-5ubuntu1 Checksums-Md5: e0ec91db842fdd9654db9e04fccb3f4a 14973796 python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 271a35887708fe9464a6419375055653 261102 python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb f167ebbe66228a1f59ee16f0c18495ad 26066 python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb 26343e398e0efefb107161cef13b9f7d 1445764 python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Checksums-Sha1: 56b347e47eeb26c85e9c725268be88bd89a1268a 14973796 python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 92b306bb302c71dc12c819e2397ce69ad39f4a7e 261102 python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb 36c9da574ea0a31f071dc4db606732d642fd2f4a 26066 python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb fe561f2f1ad3f46fdf3cb397a930172f5ada52e3 1445764 python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Checksums-Sha256: d7a379f71c77f16d5f361d5ff1ae6f5bdb154c3494fab19b3464a4aa75496857 14973796 python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb 1b387ae35d9f61743b2a4bf1e98cb9fd05bfb2edce6f5952318351eade947ca9 261102 python3-biopython-dbgsym_1.78+dfsg-5ubuntu1_amd64.ddeb 71c38fc3a8991c34b6a8bd08bd822657cca6a079ef0370e7ec84bf4721263d0c 26066 python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb 7a596eef8918cea501a73168852cc0a1e4f59db6f10b90c5065698b611fc00c3 1445764 python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 30 Aug 2021 16:11:55 +0000 Build-Path: /<>/python-biopython-1.78+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), autoconf (= 2.69-14), automake (= 1:1.16.4-1ubuntu1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu3), base-passwd (= 3.5.51), bash (= 5.1-3ubuntu1), binutils (= 2.37-2ubuntu4), binutils-common (= 2.37-2ubuntu4), binutils-x86-64-linux-gnu (= 2.37-2ubuntu4), bsdextrautils (= 2.36.1-8ubuntu1), bsdutils (= 1:2.36.1-8ubuntu1), build-essential (= 12.9ubuntu1), bwa (= 0.7.17-6), bzip2 (= 1.0.8-4ubuntu3), clustalo (= 1.2.4-7), clustalw (= 2.1+lgpl-7), coreutils (= 8.32-4ubuntu2), cpp (= 4:11.2.0-1ubuntu1), cpp-10 (= 10.3.0-8ubuntu1), cpp-11 (= 11.2.0-3ubuntu1), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.77), debhelper (= 13.3.4ubuntu2), debianutils (= 4.11.2), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-python (= 4.20201102ubuntu4), dh-strip-nondeterminism (= 1.12.0-1), dialign (= 2.2.1-11), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dssp (= 4.0.0-2), dwz (= 0.14-1), emboss (= 6.6.0+dfsg-9ubuntu1), emboss-data (= 6.6.0+dfsg-9ubuntu1), emboss-lib (= 6.6.0+dfsg-9ubuntu1), fasttree (= 2.1.11-2), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu2), flex (= 2.6.4-8), fontconfig-config (= 2.13.1-4.2ubuntu3), fonts-lmodern (= 2.004.5-6.1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-10 (= 10.3.0-8ubuntu1), gcc-10-base (= 10.3.0-8ubuntu1), gcc-11 (= 11.2.0-3ubuntu1), gcc-11-base (= 11.2.0-3ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), ghostscript (= 9.54.0~dfsg1-0ubuntu1), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4ubuntu1), hevea (= 2.34-2build3), hostname (= 3.23), ibverbs-providers (= 33.2-1ubuntu1), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu1), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1.1), libasan6 (= 11.2.0-3ubuntu1), libatomic1 (= 11.2.0-3ubuntu1), libattr1 (= 1:2.4.48-6build1), libaudit-common (= 1:3.0-2ubuntu2), libaudit1 (= 1:3.0-2ubuntu2), libavahi-client3 (= 0.8-5ubuntu4), libavahi-common-data (= 0.8-5ubuntu4), libavahi-common3 (= 0.8-5ubuntu4), libbinutils (= 2.37-2ubuntu4), libblas3 (= 3.9.0-3ubuntu2), libblkid1 (= 2.36.1-8ubuntu1), libboost-iostreams1.74.0 (= 1.74.0-8ubuntu3), libboost-program-options1.74.0 (= 1.74.0-8ubuntu3), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.11.3-1ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu3), libc-bin (= 2.34-0ubuntu1), libc-dev-bin (= 2.34-0ubuntu1), libc6 (= 2.34-0ubuntu1), libc6-dev (= 2.34-0ubuntu1), libcairo2 (= 1.16.0-5ubuntu1), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1build1), libcbor0.6 (= 0.6.0-0ubuntu3), libcc1-0 (= 11.2.0-3ubuntu1), libcifpp1 (= 1.0.1-3), libcom-err2 (= 1.46.3-1ubuntu2), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.18-4ubuntu1), libcrypt1 (= 1:4.4.18-4ubuntu1), libctf-nobfd0 (= 2.37-2ubuntu4), libctf0 (= 2.37-2ubuntu4), libcups2 (= 2.3.3op2-5ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu1), libdbus-1-3 (= 1.12.20-2ubuntu1), libdebconfclient0 (= 0.256ubuntu3), libdebhelper-perl (= 13.3.4ubuntu2), libdeflate0 (= 1.7-2ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-1), libedit2 (= 3.1-20191231-2), libelf1 (= 0.185-1), libevent-core-2.1-7 (= 2.1.12-stable-1), libevent-pthreads-2.1-7 (= 2.1.12-stable-1), libexpat1 (= 2.3.0-1), libexpat1-dev (= 2.3.0-1), libfabric1 (= 1.11.0-2), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfido2-1 (= 1.6.0-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-4.2ubuntu3), libfreetype6 (= 2.10.4+dfsg-1build1), libgcc-10-dev (= 10.3.0-8ubuntu1), libgcc-11-dev (= 11.2.0-3ubuntu1), libgcc-s1 (= 11.2.0-3ubuntu1), libgcrypt20 (= 1.8.7-5ubuntu1), libgd3 (= 2.3.0-2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran5 (= 11.2.0-3ubuntu1), libglib2.0-0 (= 2.68.4-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.1-5ubuntu1), libgomp1 (= 11.2.0-3ubuntu1), libgpg-error0 (= 1.38-2build1), libgraphite2-3 (= 1.3.14-1), libgs9 (= 9.54.0~dfsg1-0ubuntu1), libgs9-common (= 9.54.0~dfsg1-0ubuntu1), libgssapi-krb5-2 (= 1.18.3-6), libharfbuzz0b (= 2.7.4-1ubuntu1), libhogweed6 (= 3.7.3-1), libhpdf-2.3.0 (= 2.3.0+dfsg-1build1), libhts3 (= 1.13+ds-1), libhtscodecs2 (= 1.1.1-2), libhwloc-plugins (= 2.4.1+dfsg-1), libhwloc15 (= 2.4.1+dfsg-1), libibverbs1 (= 33.2-1ubuntu1), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-7ubuntu1), libidn11 (= 1.33-3), libidn2-0 (= 2.3.1-1), libijs-0.35 (= 0.35-15), libimagequant0 (= 2.12.2-1.1), libisl23 (= 0.24-1), libitm1 (= 11.2.0-3ubuntu1), libjbig0 (= 2.1-3.1build1), libjbig2dec0 (= 0.19-3), libjpeg-turbo8 (= 2.0.6-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-7), libjs-jquery-ui (= 1.12.1+dfsg-8), libjs-sphinxdoc (= 3.5.4-2), libjs-underscore (= 1.9.1~dfsg-3), libk5crypto3 (= 1.18.3-6), libkeyutils1 (= 1.6.1-2ubuntu1), libkpathsea6 (= 2020.20200327.54578-7), libkrb5-3 (= 1.18.3-6), libkrb5support0 (= 1.18.3-6), liblapack3 (= 3.9.0-3ubuntu2), liblbfgsb0 (= 3.0+dfsg.3-9), liblcms2-2 (= 2.12~rc1-2), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblmdb0 (= 0.9.24-1), liblsan0 (= 11.2.0-3ubuntu1), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmbedcrypto3 (= 2.16.9-0.1ubuntu1), libmbedtls12 (= 2.16.9-0.1ubuntu1), libmbedx509-0 (= 2.16.9-0.1ubuntu1), libmd0 (= 1.0.3-3build1), libmount1 (= 2.36.1-8ubuntu1), libmpc3 (= 1.2.0-1build1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3build1), libmysqlclient21 (= 8.0.26-0ubuntu1), libncurses6 (= 6.2+20201114-2build1), libncursesw6 (= 6.2+20201114-2build1), libnetpbm10 (= 2:10.0-15.4), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnl-3-200 (= 3.4.0-1build2), libnl-route-3-200 (= 3.4.0-1build2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnuma1 (= 2.0.14-0ubuntu2), libopenjp2-7 (= 2.3.1-1ubuntu5), libopenmpi3 (= 4.1.0-10ubuntu1), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5ubuntu8), libpam-modules-bin (= 1.3.1-5ubuntu8), libpam-runtime (= 1.3.1-5ubuntu8), libpam0g (= 1.3.1-5ubuntu8), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpciaccess0 (= 0.16-1build2), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build3), libpdfbox-java (= 1:1.8.16-2), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.40.0-1build2), libpmix2 (= 4.1.0-3ubuntu1), libpng16-16 (= 1.6.37-3build3), libpq5 (= 13.4-1), libpsl5 (= 0.21.0-1.2), libpsm-infinipath1 (= 3.3+20.604758e7-6.1), libpsm2-2 (= 11.2.185-1), libptexenc1 (= 2020.20200327.54578-7), libpython3-all-dev (= 3.9.4-1), libpython3-dev (= 3.9.4-1), libpython3-stdlib (= 3.9.4-1), libpython3.9 (= 3.9.6-1), libpython3.9-dev (= 3.9.6-1), libpython3.9-minimal (= 3.9.6-1), libpython3.9-stdlib (= 3.9.6-1), libquadmath0 (= 11.2.0-3ubuntu1), librdmacm1 (= 33.2-1ubuntu1), libreadline8 (= 8.1-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2.1build1), libsasl2-modules-db (= 2.1.27+dfsg-2.1build1), libseccomp2 (= 2.5.1-1ubuntu1), libselinux1 (= 3.1-3build1), libsemanage-common (= 3.1-1ubuntu1), libsemanage1 (= 3.1-1ubuntu1), libsepol1 (= 3.1-1ubuntu1), libsigsegv2 (= 2.13-1ubuntu1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-8ubuntu1), libsqlite3-0 (= 3.35.5-1), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1k-1ubuntu1), libstdc++-11-dev (= 11.2.0-3ubuntu1), libstdc++6 (= 11.2.0-3ubuntu1), libsub-override-perl (= 0.09-2), libsynctex2 (= 2020.20200327.54578-7), libsystemd0 (= 248.3-1ubuntu5), libtasn1-6 (= 4.16.0-2), libteckit0 (= 2.5.10+ds1-3), libtexlua53 (= 2020.20200327.54578-7), libtexluajit2 (= 2020.20200327.54578-7), libtiff5 (= 4.3.0-1), libtinfo6 (= 6.2+20201114-2build1), libtirpc-common (= 1.3.1-1build1), libtirpc-dev (= 1.3.1-1build1), libtirpc3 (= 1.3.1-1build1), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-3ubuntu1), libubsan1 (= 11.2.0-3ubuntu1), libuchardet0 (= 0.0.7-1), libucx0 (= 1.10.1~rc1+really.1.10.0-1), libudev1 (= 248.3-1ubuntu5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-8ubuntu1), libwebp6 (= 0.6.1-2.1), libwebpdemux2 (= 0.6.1-2.1), libwebpmux3 (= 0.6.1-2.1), libx11-6 (= 2:1.7.2-1), libx11-data (= 2:1.7.2-1), libxau6 (= 1:1.0.9-1build3), libxaw7 (= 2:1.0.13-1.1), libxcb-render0 (= 1.14-3ubuntu1), libxcb-shm0 (= 1.14-3ubuntu1), libxcb1 (= 1.14-3ubuntu1), libxdmcp6 (= 1:1.1.3-0ubuntu3), libxext6 (= 2:1.3.4-0ubuntu3), libxi6 (= 2:1.7.10-1build2), libxml2 (= 2.9.12+dfsg-2), libxmu6 (= 2:1.1.3-0ubuntu1), libxnvctrl0 (= 470.57.01-0ubuntu1), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1build2), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.8+dfsg-2.1), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.13.0-14.14), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 16), m4 (= 1.4.18-5), mafft (= 7.475-1), mailcap (= 3.69ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), mime-support (= 3.66), muscle (= 1:3.8.1551-2build1), mysql-common (= 5.8+1.0.5ubuntu2), ncbi-blast+ (= 2.11.0+ds-1), ncbi-data (= 6.1.20170106+dfsg1-9), ncurses-base (= 6.2+20201114-2build1), ncurses-bin (= 6.2+20201114-2build1), netpbm (= 2:10.0-15.4), ocl-icd-libopencl1 (= 2.2.14-2), openmpi-bin (= 4.1.0-10ubuntu1), openmpi-common (= 4.1.0-10ubuntu1), openssh-client (= 1:8.4p1-5ubuntu2), passwd (= 1:4.8.1-1ubuntu9), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), phylip (= 1:3.697+dfsg-2), phyml (= 3:3.3.20200621-1), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.10-1), prank (= 0.0.170427+dfsg-3), preview-latex-style (= 12.2-1ubuntu1), probcons (= 1.12-13), python-matplotlib-data (= 3.3.4-1), python3 (= 3.9.4-1), python3-all (= 3.9.4-1), python3-all-dev (= 3.9.4-1), python3-cycler (= 0.10.0-3), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.9.4-1), python3-distutils (= 3.9.5-0ubuntu3), python3-isodate (= 0.6.0-2), python3-kiwisolver (= 1.3.1-1build1), python3-lib2to3 (= 3.9.5-0ubuntu3), python3-linecache2 (= 1.0.0-4ubuntu2), python3-matplotlib (= 3.3.4-1), python3-minimal (= 3.9.4-1), python3-mmtf (= 1.1.2-3), python3-msgpack (= 1.0.0-6build1), python3-mysqldb (= 1.4.4-2build3), python3-networkx (= 2.4-4ubuntu1), python3-numpy (= 1:1.19.5-1ubuntu2), python3-pil (= 8.1.2+dfsg-0.3), python3-pkg-resources (= 52.0.0-4), python3-psycopg2 (= 2.8.6-2), python3-pygments (= 2.7.1+dfsg-2.1), python3-pyparsing (= 2.4.7-1), python3-rdflib (= 5.0.0-1.1build1), python3-renderpm (= 3.5.66-1), python3-reportlab (= 3.5.66-1), python3-reportlab-accel (= 3.5.66-1), python3-scipy (= 1.6.0-2), python3-setuptools (= 52.0.0-4), python3-six (= 1.16.0-2), python3-traceback2 (= 1.4.0-6), python3-unittest2 (= 1.1.0-7), python3.9 (= 3.9.6-1), python3.9-dev (= 3.9.6-1), python3.9-minimal (= 3.9.6-1), raxml (= 8.2.12+dfsg-6), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-0ubuntu4), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7ubuntu1), t-coffee (= 13.41.0.28bdc39+dfsg-4), t1utils (= 1.41-4), tar (= 1.34+dfsg-1build1), tex-common (= 6.16), texlive-base (= 2020.20210202-3), texlive-binaries (= 2020.20200327.54578-7), texlive-fonts-recommended (= 2020.20210202-3), texlive-latex-base (= 2020.20210202-3), texlive-latex-extra (= 2020.20210202-3), texlive-latex-recommended (= 2020.20210202-3), texlive-pictures (= 2020.20210202-3), ttf-bitstream-vera (= 1.10-8.1), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), util-linux (= 2.36.1-8ubuntu1), wise (= 2.4.1-23), wise-data (= 2.4.1-23), x11-common (= 1:7.7+22ubuntu1), xdg-utils (= 1.1.3-2ubuntu2), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1630339141" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-biopython-doc_1.78+dfsg-5ubuntu1_all.deb ----------------------------------------------- new Debian package, version 2.0. size 14973796 bytes: control archive=74082 bytes. 651 bytes, 18 lines control 315452 bytes, 2491 lines md5sums Package: python-biopython-doc Source: python-biopython Version: 1.78+dfsg-5ubuntu1 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 19990 Recommends: python3-biopython (= 1.78+dfsg-5ubuntu1) Section: doc Priority: optional Multi-Arch: foreign Homepage: https://biopython.org Description: Documentation for the Biopython library Documentation and examples about how to use the Biopython library. . This package also contains the unit tests of the test suite to enable reproducing the test results. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2021-08-30 15:59 ./ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc-base/ -rw-r--r-- root/root 598 2021-08-22 17:54 ./usr/share/doc-base/biopython-tutorial drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/ -rw-r--r-- root/root 1794 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/README.rst -rw-r--r-- root/root 1104997 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/Tutorial.html -rw-r--r-- root/root 2333344 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf.gz -rw-r--r-- root/root 6350 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/Tutorial.tex.gz -rw-r--r-- root/root 240837 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/Tutorial.txt.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/ -rw-r--r-- root/root 4062 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_advanced.tex.gz -rw-r--r-- root/root 29515 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex.gz -rw-r--r-- root/root 1739 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex.gz -rw-r--r-- root/root 7703 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex.gz -rw-r--r-- root/root 15691 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex.gz -rw-r--r-- root/root 3273 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex.gz -rw-r--r-- root/root 21268 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex.gz -rw-r--r-- root/root 23509 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex.gz -rw-r--r-- root/root 12391 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex.gz -rw-r--r-- root/root 5131 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex.gz -rw-r--r-- root/root 2004 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex.gz -rw-r--r-- root/root 6237 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_learning.tex.gz -rw-r--r-- root/root 15739 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex.gz -rw-r--r-- root/root 18054 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex.gz -rw-r--r-- root/root 3598 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex.gz -rw-r--r-- root/root 10932 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex.gz -rw-r--r-- root/root 1685 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex.gz -rw-r--r-- root/root 5405 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex.gz -rw-r--r-- root/root 14495 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex.gz -rw-r--r-- root/root 12598 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex.gz -rw-r--r-- root/root 8214 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex.gz -rw-r--r-- root/root 17170 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex.gz -rw-r--r-- root/root 5022 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex.gz -rw-r--r-- root/root 7438 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ -rw-r--r-- root/root 629 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 707 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/004029547AAB1172AF2684D2CA89EA8867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 199 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/007A62C4B86AFB9385A7D8624166470767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 676 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 357 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/008EC869056581873654FF9A8E92D39467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1055 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 639 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/00F087159F0534545C0B7288838BEF0E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 473 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/015798D317E9D8732518AFD186C997CA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 196 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 751 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 676 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/019E169CFF67EC7D891D6A023964706114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 397 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1094 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/023FBCDB71B9572D8D436D0AA1193B6367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2299 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0290A0C926605EF68EF2EEEAEB078A0667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 695 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/02A6CF1EA94D619AE2B9428BDA4531C567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1433 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/034BEABC04AF21423AA043E0986724A167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 911 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 475 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0420D397BA03971C0079F52E55FEABAB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1975 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/042DA7A7135DAEF797FB2EE6170C3B6D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 299 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/04BEBF413314D7A51FC0F91D3066CE4F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 666 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BAB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 560 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0517D975CF92331B81AF837F9D25717367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 262 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 517 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 305 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1032 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/05F3B09A7CBE08B1C91DE55284F12C2867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 928 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/06A7ACEFB26AA7DD59C8205B22EBC3D967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 166 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 794 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/06D29A54CBCE7E9BEC9B02AF3737953F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 694 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/06DBC59F2EAD33E7A95188853787661567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 539 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/076325C16F7C56460228C73B3147DF7A14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 142 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 270 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1335 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/079D37C5A2B3943F37FA4CC9C5C43BC767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 473 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 365 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/087889BE640F25A1E1D26EB819B5599067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 694 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 522 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 693 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0A4AF1735B84470B955325263082B38667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3663 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 979 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1128 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0ABDE2E70066A4661C3DDA814AC7225814FA033DCB1376922271CBD58A8A4A36.pygtex.gz -rw-r--r-- root/root 1262 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 257 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0B051755682044B54FDC8CE728FD23B50C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 526 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0B895A7CD7770AD5152A902E24E8616967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1072 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 863 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 482 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B19240C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 99 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 177 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0CFCBF886B5144440F79F6124319202267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 569 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB9364967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 411 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 559 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 860 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2066 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2720 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0EA68B85D005018D196EB15C866B9F3814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 492 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1556 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 873 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex.gz -rw-r--r-- root/root 1261 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/0F60C02FB1C0A5EBADB8EF693216594667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 956 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1075DB6AF9E4A3F207521105E503858714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 885 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/10829292EF1E211AEAC19B179A46CD1067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 462 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D3267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 586 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 977 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/10F60558792DABA08CE906FCD09A993C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 631 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1107FF2DF5C0B4B87F12506011FBD20867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1789 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/11417087354B0B78128E27B0162F48D514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 639 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/115C0D8716DAB358EAFF936486F27AB967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 168 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E830C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1206 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D7067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2139 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 153 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/13774A78311C8B2B99285E3D509AD85567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 410 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9ED67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 342 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1432CF672342B0A065BD2202A12E392067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 756 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 177 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/143B9D317680E51D3A6E5641208720CA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1127 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B8467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1781 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 130 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1516062A6E16A043D5996183E67DEB860C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1453 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1525A6F338DC70B7A056F15305A9579D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1203 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/15FD2886E49804AE97038F2733592C7167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 505 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/163F04F633C696E8F41EBFFBB74DAF9D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 87 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 492 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C56040767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 593 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 339 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 521 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/171A69BE62E368AD65396E23A20B1DEE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 291 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/171E9B14E98BBB8F1EBB704EB1FE2C7667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 370 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 192 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/176227E746894D602FF7231BCB8E5F2167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 186 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 512 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 345 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/17E5085C64881C08DC82C2B5573291F267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 328 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 332 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1446 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/183C1BBBB8FD6ED15EF6C8F03298A19767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 715 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/183EBB0903E699FF7289E5FDA71CB09667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 644 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A7067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 837 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/18A924CDEFC2ADA66753F94C892F56B167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1605 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 207 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA850467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1548 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B829771114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 934 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1B29C13B779A89B3DE705BA0061B879367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 310 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1B5E788850B45798FCA06125D5880A140C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 293 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF889505567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 400 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A02467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1087 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 335 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1C597DC49857D56C7E140B1D795218F367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 975 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C60C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 790 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 654 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1DE080CE5283B4D334F81719880190E267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 605 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1E096B06E33D157FFE18E045579F838C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 797 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C0967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 394 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1E88A30624397E1FA5202CD67F078C3114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2041 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1E93113A22D275DCF1ED22A91F77D57414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 175 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1F3E2EFB988F2639C701A920B547241D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 401 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1030 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1FE33E4DDF6E596EA7687FB6F017F09967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2067 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/1FE6956CA319233DB7A5C00C9BEC6D4367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 919 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/200193443B83EEADE7971FACFD86F16D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 405 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 605 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/20711981BAB695B8006B7A92E4859CF667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 369 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 464 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 240 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/21058E2884DE0E2797798658CEC2E54F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 525 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F2640667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 127 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E710C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 867 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/218C0A230BCAE3B7E030880B471BA86367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1072 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 762 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/21D3336F2855CBE535339D390FE18E2567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 213 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 979 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2203C1F3E2BE8BEF505556D02F8F382C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 299 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 335 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/22387CA0FB9349FBC21B30A09B80342067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 197 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A1267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1286 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/22DC4F8C7ADBE16392AA93A6EF2819D767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 812 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 879 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 704 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A44267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 362 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 177 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/23C65980427B41C7D9E32947CD41FD8214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 934 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1133 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 793 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 452 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/256D8F4D1BB7E6301923B808B6EEB34567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1654 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2590B11C695B984E246A0A91734F786C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 338 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/25AF2FA7C23EEF982CD3578DCB53006514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 629 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/268983882DD871BC94F164D025D08B4214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 297 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/269F8765456CC9B88BDF6A41BC90473E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 871 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1241 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/27D68FCC443982B3438F0C03A4D541D667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 153 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2810A7579DC6FE011D31E2F074471A7467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 515 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 586 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 765 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/290D0631491AEE7E10A3CE09C85D720667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 329 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 538 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 354 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1092 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 112 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2B17732B358EE5D871A248019977CF380C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 202 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1291 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA55614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 515 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1120 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2782 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 809 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2D75ABBC1FC42B7382049A62E37C0E4D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 742 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 246 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 461 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB0367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 443 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2F13678C6026DEBF0D98D4214CDF499867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1271 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 298 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 299 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 339 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 854 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 90 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 494 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/30EDED7029501226C973943BBA0D1ECD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2694 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 768 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/31A4214F0316300852C263796C130BE167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 947 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/31E7567531B3A1035700A1E555A47FC067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 466 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 646 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/31F98B5F648636905472A89ADB4396EA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 306 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 380 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3256378680D2E01A0D283817FC4F963367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 290 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 264 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/32D78458130807D5C8DD536942BA738867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 275 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 185 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 370 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 398 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA1267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 915 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/33B5E369AD9661A05C861A5AE12A509267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 786 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/33F85FAC7266F854F2B021334678185567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 175 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1106 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/34725A02F7895E565E5A29E2AC23E8B967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2429 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 743 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/34883991B974FF1C1BE2D18B230693C567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 430 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 464 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/34FD0122B81370E5F3563284D60CFF1767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 643 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/357B0F655AFAF3808FD8EE23EE50095414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 690 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 746 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 273 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36073AAEBADCD344208056C9868E001C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 399 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/365D7E5A27BEEE6ED9265079DF23189967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1675 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36931D2CFB3ECF0D53B3D7376832300467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 547 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 223 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36B58FEFA589A67048E7D5B63D489DAB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 609 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C27067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 586 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 192 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 712 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C647167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 406 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE97067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 436 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 593 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1095 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE7467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1802 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 813 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3876A0F1CD2CBCD824C73B244059EE4767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 562 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/38FD553026F1DCA254B4E8289D036D8767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 216 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/390D9013E6AF7385E3C5A71EC44014AA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1033 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1421 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1295 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3A499902396CBA88B311EE3A93BC266367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2730 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3084 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 487 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 644 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3B09F0463D35461C42D2272763E7345114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 669 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3B28841A01F9F481844677E14CA7D2A367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 345 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1801 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3B6409EA2F4B25B8F136CE97DC95E8C467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 286 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1920 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3C12150A1943B695BB045865F0A87E440C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1069 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3C3B5BB472E9A4A7B3F5BFA41CA60C7867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 75 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 374 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 228 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 385 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA60C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 250 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3D3953EF520FE9546FC19DB705E6908567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 374 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2147 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3DC3D3FA19AFC359663B271CAF187B4867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1317 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 107 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 271 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 207 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 504 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 294 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 924 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/41118C19A2E462F9721E8AB1E52AAFC367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 757 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/411A7DB0F7208D21C6099C86249233F367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 270 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/41250203CD471B54840A6F5E1188318D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 236 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 521 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 245 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E36167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 534 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/41FC845107E552AB47AA881B90236E1867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 214 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 492 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/427B060556C1BB93F326E658CF6C875367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1156 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2342 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4323DBBD15E176599A70095217F377E767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1330 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4329189CC201D756D0770BD7596DF0D867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 536 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 294 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 206 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 848 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 457 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/454E46BC171F751C15F6A295F2284AB767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 826 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 185 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1481 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 992 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/473B4163A14D626D6B7A08A26A0A126667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 204 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C8067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 559 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 186 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 785 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/480025795249845BAA7F48D4A45ADB2167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 243 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA2767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1279 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/482576AF06E80D82290535FF7857A24067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 655 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB4467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 856 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/483E7285F7FA2A76D28505EE0DE792D467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 193 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/486C8450148EF1EADB63A41AB9A896FA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 370 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 724 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/48D36449ADA742065AC871DB512A14FF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 98 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 998 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1163 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/491F8A9C8CFC3BB4763B296852A6D1D567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 440 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4987879C3FF61E04C891C0AD5AB67A0667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1413 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 627 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4997CC17B3360B104654D2ED20FA8B4067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2571 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 97 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F44720C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 395 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 579 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4B2423E325126B67BF464F894752E32267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 177 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1269 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A20367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 416 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 942 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 995 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1344 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 599 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2156 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 880 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4DC21B98C2C48E89E7C16C6BAB13C5CC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 299 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 3444 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1142 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4EDDF5C23B0FCCC279960365B499A16C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1132 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4F50929124655BC08B3D6057B14984E567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2934 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4F9D9C998FB1DECE2FBF932B39921FFA14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 723 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C7167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 637 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1742 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5032B21DEC5EBE299D472B0AF220432A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1318 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5039524AFDCC2184E0FA37B45448443D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 472 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/504DC4F75F719CFF95C5294B2961C97367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 568 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/504E820336D4D852A5104D8E9762250467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1611 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5056BF2116652C732E1D8E3CDA11D6AD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1912 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/508710FC1759BFFED598544DEC99BC0D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 706 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5098CD053449CEC3C9C30C90A007A36467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 396 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 235 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/510764EE0BB38AD6C688E719896775070C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1023 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1415 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/51CC2C09DB95235CA19612EAFF65F48767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 152 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D0167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1008 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 507 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/523928538FA511A925EC995B1803BD1667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 191 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1819 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1002 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/533611943FA3AA7E144BE9661F0999DC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 156 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/53BF343E6B63B739979E29182E1485D367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1239 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/53F70E2F1CBA6BCBDCE4071375628CF767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 614 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/544A0904C171F7ACED98D10D90A2BBA267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 257 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF8267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1902 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/54D3F8BEB8094C8ADFFB26585CE1463814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 288 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 595 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/55B4E33A5EF0F1A0B51702F25755DA0367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1657 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/55D34AF6272FC77B12E7D4DD16884A6B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 398 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/55F15E0B4613AC1B2AC177DC4073736714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 995 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C9167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 229 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 523 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/57648E2674FE9BB727770109CA65C71A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 328 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/57A82B690A435E6AD7DAD62778DB823167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 584 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA78267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 383 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 357 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5845916CE276A61945EF5849B982E8A067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 187 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5A42A68287048A843E1066F2E272762267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 557 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1218 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A630520C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 573 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5AB8B67C801B8858B19590FE5D018BA367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 296 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5B3FAD3A26A9987B2E21C41A827DC1CD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 624 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 103 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F00C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 774 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5B76E9A877CC1A76394FE84519866D4467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 828 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 469 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 166 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D140C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 225 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 394 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5D58687CD77437A3DD50DABD32F1536714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 389 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5D9F7C1083DA643BDA1083E79D82EF2067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2436 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 446 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 210 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5F3B74C4B4D1FF3D387E6F57F726D17767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 162 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1732 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5F63834565B18947B52E7892E30EC01B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1021 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA5767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1623 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/601CCA4B782F1DA528DB81B02480319514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1038 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF00867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2294 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 390 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2073 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/618B9F1B5BFA1CE93B03A47D26F6F6E367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 505 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 109 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 955 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1880 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6256254C5A7DFD21185291C77133BFDF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 384 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 591 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/62D830B5536F542C80973708E7B78A2667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 791 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/63599FE26E47E2B5739BC250C642AA5067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 142 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/636486BB1CF700F6391685224211BE2267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 328 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6382581C9B01D86887B13EFD1FA7AFA267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1463 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6382EC6908438B3E67C757E70A11466C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1105 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/63EC9F933A4699B71D633AB9C35237C667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1244 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 545 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/64868CEDE925B08BA4840E27792F9C950C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 947 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 554 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 462 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/650077A39F2D52831A52D045B184B62467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1636 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/652F2E49D1B3634A04F3CB950B38570467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 150 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 297 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/665A7700DAC7A651C288CFBC049107360C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 466 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/666DFB2D351C7C4DE86ECB38CCBB491867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 941 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/674F0422DD30F7C4B4E808093732659367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 722 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/675833B93A69F5DE13F680548E25EA3E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1158 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 290 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/67EFA0AEA2A7C63922644A13FBF91A3767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 904 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/684A3C9C1713469B78289C6B9952D81614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 421 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1071 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2480 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 230 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/68D5F2D4CFDBBFF65405364F54DA0BCC0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 2712 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/68D834E8AB9E722FD7953C65DB7E9FDB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1332 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 294 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/692203B43955DEEBA597180E090EBEBD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 645 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/693D94A81EEABF91A72754E60DEB360614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 413 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D97967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1050 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/696A69FC8317D40C8605CBADFDA5D87767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 184 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/69D3F9059506073A988980B78CEAB24767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 393 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6A7DB1B14B8C3B59B03D102D4BEECDD167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 604 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 660 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6A9404FB47549766BD16858F97A6D40767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 369 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 801 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6B4057929CCF1526CF34FF943CFE313567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1194 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6BB61362276E8D90F0EB6BF36B274A6367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 215 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6C027F180664948287C5ED0C06A70E3667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 301 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 181 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 275 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6C96493DCAF9B522114CF4E5E2ED59EF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2329 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 144 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 502 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6D2EF2116C7B06D5B8D357EA567F832E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1012 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 649 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6D9EA8AD382A3B03E65A62B6462353A114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 215 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 675 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 472 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1010 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6E7EC19AB4E894FD7BECB47DC082FC3867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 438 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6EC91D6C707FE27D0D4D730403C8607367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 796 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1199 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 192 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F7267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 209 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/6FD15C01D270A661A77854FF78F033B867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1288 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 798 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1101 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 739 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1353 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 564 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/728242DAC9077785511462C5CD16E66767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 379 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 136 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/73F214546259C26F0E69498480C6F5E414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1431 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE40879314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 528 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA70C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1140 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7455566FBE10CCFD5236DF65992A9F7067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 375 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 837 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/747E2FE5A2594F5385BB7437A451791867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1220 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1754 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/74D8F602592BD3646F12A04951B2C44C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 546 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7516DA4BD78D0A0E4F2C69502DE8DBBC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 175 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7528F52197E46B376DB12FB34672D7A80C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 689 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 149 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 146 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 802 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7662755469082A25B2A4B53656D96A4014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 684 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 912 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/76A63394593860DFB229C6A3AEEAB5A367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 178 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 113 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1614 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 550 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 679 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B9414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1135 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA7767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 330 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 172 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1044 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/787FD2B6485DC30362A59A325340738367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3521 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 959 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 111 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1053 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 308 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB1567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 770 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7A92C6B39F0BC9AE063090BDDCD011DF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 394 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7AFBDEDDA8F411FC4281444B70E6021E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1101 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A7514FA033DCB1376922271CBD58A8A4A36.pygtex.gz -rw-r--r-- root/root 468 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 379 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7B877C459BB3438E40CD76B614F605B614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 339 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF9867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 854 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 530 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1171 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 849 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 540 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7D220C09E8614EBE54BD07A8C18AAC3367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 194 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D90C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 249 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 693 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7D984F47D0B3A0329DBE2A791B527F5367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1197 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 201 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7E05622F86D5C6456282864B1095B19C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1771 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7E077104A49653CA66AAC778C604E64A14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 654 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7E494FD25838EE4C9E476EBA48BDF0CE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 748 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 375 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7E80E6D2D75417229F3B2B705315B12867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 308 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F80C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 241 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7F027F6FD8E839F99A1077399D9B8EFF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 272 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1038 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7F43A5B55F7492DFDBA4E17BF7F34F4767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1325 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7F5E0E05D69E7F9EC30F2A5CD5D9B5F767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1205 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB8067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 535 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D245767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 626 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8009655B8BB14028E5E1BDE9BD4B27E767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 543 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 259 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1188 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/805B769BEA8271618919879EBC73D6AB0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 2342 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/80957FF2744A858A2D626820D87665F167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 454 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/819EB88A2CBCC7948E4BEBE7FB9F80EA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1064 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 400 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC8067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 951 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/824F6600A92AA40841D5D9A4C2EDC5FD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1536 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/826A4111F6CE74D7A673B6C8F5681FC367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 470 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1380 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 629 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 273 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/82DD3285068398C1A65910EDE1BE970C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1220 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 441 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8327145320A3BCB412D977F6683B71A267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1993 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/83934A12FA213409ADDBED937D121BEB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1627 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D85014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 490 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/841786D4B432970D606160D13E29453E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 765 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/84495A3B19FA62DBFC292B309E5DE1E567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1240 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 582 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/84DC73903FA70E943C63131089E2ED9F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1103 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/852A3852541269829CE5DF380357F2CC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 173 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 506 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C00C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 229 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B03514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 108 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 3486 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 340 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/869D4007B198B35A03870134DB69E5F214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1579 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/86BE687BF0F504548CFBA35246A755EF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 155 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/86F990EF8173435624D9A400AC90995967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 788 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/86FA506E88E30EB82E7186A57112C98C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 672 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/87466E9C05D4662C6164A2AFA3A69C4967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 563 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC8809867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 164 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 174 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1172 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8837CDE38481CF679BB33997916F09AB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 829 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D84982267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1601 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/886094CE2C1CAC714387144709D5A47A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 199 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8900FA9A050CA74204F5DCB8D938642067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1014 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8905908F46BA67CB99A3360F253875C567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 980 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1402 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8975A4CCBC4C6138C302117E04F203AD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1084 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 803 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 578 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8A4D3A313CCE21054A332F39A60F4F8D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1542 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8AC2E9641A86FDB767AE88F57311BBC267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 557 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8AC6389F07C07315B68A4843F8EC4A8167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 278 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8ADDD83BA2CAFB21C875C8B9C0986B9B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 981 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8B04CCF5A253EA893E0D643775A806A867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 466 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1748 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8B3B5AF56E90E069FAEF17DB5597747067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 411 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8BFD5A5D2A0A2DB21DA15E3F1719D3F667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 574 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8C09EEE739CAD078852B77A784E1269267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 758 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C260C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 617 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F5567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1085 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8D1D071E3CA3DD9187A6F2C35836C58A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 274 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8DCADA174B7DBC35827913027E1507B467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 274 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 955 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8EC03E9C8500D05C6439AC85123A925367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 845 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 78 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1279 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 796 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/8FDF9BC99C1716A778F3C36AB623FB7067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 252 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 646 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF75667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 406 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 153 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9293BA115F68336B4D0213D24C96AE7567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 338 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/930B60BD569CAAF368B0E614553F303067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 161 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 423 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D40C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 431 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F968967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 689 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C4214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 600 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 828 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9457A436D281E066D350873A88476E5967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 407 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 286 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 673 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 108 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 289 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/94A9BE470837AFDA4B8581B79BB1249267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 900 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/94C0A9A9293B19D950018F966B967E8167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 559 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 438 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/95318595464A829C3F1A431E3C76909F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1146 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 213 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/958010CCD8250B2A6D359F037738B54E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 303 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1051 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1561 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/96245EB54DC7A4475CD270566892BAE467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 962 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9680AE27F087032C33AE5BA458DF8E9C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 171 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE0667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 137 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1116 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9730D42326723F9A4A3771D68D644E7C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 754 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 486 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/97FFA15DF713393C0351F9F947AC446667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 409 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/99476F758194110AC0ED8AAAFD8ECB7C14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 786 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 638 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1044 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C7467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 980 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 561 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/99F306D6A0BEAEBD98D7199579E70E7A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1296 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 351 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 78 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 326 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9AD5FC012C704C150685AC4578589E6B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 574 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 670 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9C337E8D92F5A543D90F4D2C8BCBF18367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2501 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF420C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 2535 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD734214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 772 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 260 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 190 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9D8413811B6BC75226431D501B682BD967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1821 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9DD9A1F0A4FFCEEE15CCB35AFAE0B5FB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1060 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9E15781AA166AC63C2DF3BCF256282240C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 580 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9E297F3C90950B761CCB974F597BCC1267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 577 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9E8A7295F5BEF290E7F4283BD726160367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 954 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9EAAC9128F41783D91F19053824A0E3267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 266 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/9EF49B98A62C70CD81126514DF79660067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1192 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A06B859656EACE1EB197B276B0CAD47614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 374 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB2767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 819 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A117079E905A3317941FA3CB9457C22567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 737 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A137A30778671FFE0F193EED7A8819D767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 489 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A145A6C1AAD034F2FF71DE52310A2BD467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 238 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A1A806B513EE80294615F1F6C56CA22F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 987 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A1B56761C52CC91D59E84159B69EC85E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1421 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A1C712272F319372A1AB78DEB403D23367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3959 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 592 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A27E6BF4EEB8E8B1C23904926786173967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 285 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 436 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 570 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 781 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A3687DE99B121F342703021A11AC3AB867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 718 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A38355D92EE3DC8D96655428C0CEDC1567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 231 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 460 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E5716467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 619 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A3EC6E0F9D852E0B8DED607938A7279767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 222 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 886 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A487EC21D16913E80A948528AA61CD6467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 544 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A49EF93DADD431750435FD5125A74A0567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 343 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 988 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A4BD3C61B53064F601B4477CDD3106A667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 210 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 398 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 798 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 843 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 190 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A59C6CF4854355E98CC312686998A38B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 683 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 255 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 356 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 374 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 791 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A73938953B2223965D08B528F27C56E867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 936 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 194 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D0367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 320 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 198 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3019 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D31867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 359 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1383 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/A9BF9BE7E29EF854A32E7BD4E79E346E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 864 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2245 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AA26452EC447FD01D35D14B1CE4F314767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex.gz -rw-r--r-- root/root 335 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE45167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1278 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 927 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1395 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AB42E81B0039139237BF82BA22516C8B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 578 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AB8625F199818648FAC2C5737C2D032067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 320 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AC02E3950380715FC960C04EF317D69F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 969 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AC12821BA0AEE8F48238EAC359A3107767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 262 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AC8B7A8ADEC6FEB0B1260E665CF238B667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1051 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 489 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 223 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AD214E544DAF411AB89A7DCBECDEFFD10C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 475 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB00C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 913 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 290 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE070C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 308 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ADCE00FC778B0EA886D44F1AA651918267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 688 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 413 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AE2B91C0366D79644B870EB1EB9436E667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 453 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 723 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AEF267C3082CB68394DCEE656CEB2FC167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 638 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/AFDE811EFDEDCFD9BBD0CAA9BF7F35C267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 889 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1233 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1200 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1162 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B2412D9441598FCD30172739CB3CCA3967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 383 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 849 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B35CDBE12860937BD1F854583E7BA59567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 341 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B3803DD4CC09C0CB16CB0DA82C47FC9567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 435 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 915 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B3F030F5FA6A7817CFA605062601C81267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1455 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B402706802BF02F25F9B09CDB22A3FEB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 857 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B41343A9090DC4C41F9EC69AB6DEDE1B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 400 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D17667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 313 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB3567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 574 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C6306467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 503 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 657 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B53BAB1CC7569CE8ADFECF2CFC02D40267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 664 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1887 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B5E175DBFE536E62D3BB466A47FD029F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1382 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 497 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 209 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B6B956752D54554859CB3FC041890BD767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 560 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B6CD5F177651EF61E679B9FAF6C25BE867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 262 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B788F0FBC120E74A47922EA232EB867167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 489 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D23867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 854 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 282 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B805770413E9199C6B5EFC63A944737F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1152 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B875C8F385654DD9607A0DAA82B3371067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1459 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 618 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B8D2A546EC4941692F427A363193FBDE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 305 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF0200C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 768 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B9321587EBA597104E435182128B200F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1029 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 568 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E4867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 394 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 250 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 3165 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BAE95C3681F5665B01248E86DAC866B867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 473 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD676867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 129 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 977 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BCCC189D6984A3CAE23757DF96064B4167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 415 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 482 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535AB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2037 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 435 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 373 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C50C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1021 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 513 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 273 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BDFE599DAB8ED6AC4F17D4FC6F0230BC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 772 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BE0AC194CA3417BFC49309A9791ED35B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 217 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 849 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BED3DC012DBB7B6EBE4668AF213D562B14FA033DCB1376922271CBD58A8A4A36.pygtex.gz -rw-r--r-- root/root 1007 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 456 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 916 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 549 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C083BA757ADC0A392BD8802D1351612C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 859 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1068 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E5967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 252 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 416 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1885 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 505 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 687 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C194E2231D844AE7D0223173D2A8999114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 150 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C1B7B447DBB266302BC82D7DBD16222114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2217 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C1EF8469C0F4B427273EE106072F9E6667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 420 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 687 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 347 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1963 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 640 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 442 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1514 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 821 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 446 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C4346C691565244D87DFA5ED26B512E367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 856 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB0067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 377 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C47681A25A04F989A9657602F996D5B514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 508 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 619 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C5780017603AFBC3BB3E9F52ED6688C514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 291 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 572 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD208567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 358 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C65ED72167AAF5D5730D19463FD6922867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 292 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C66E35936EA68A132264FDF63F70A42A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 326 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 671 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C7331D522D75BB7830A1364BC3B7169267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 497 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C7567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 183 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 403 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C79D210A6D0E5501910FFF311063879E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 301 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 340 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B4967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2091 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C7C0911CDDC1913791B1BD1EDA0EC55F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 351 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C82398A4A04383A063D2E6488112305214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1064 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C8587EE0D03D0937B88179912FC3582E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 456 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECEC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 375 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 157 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 550 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C93EE09C24214EFB103597E967BC093E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 224 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C9558BD802C8764E46CF73625C14C20467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 499 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA60167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 339 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1107 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 246 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 439 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1830 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CB1A766DCCC9D440884673396E01205367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 183 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CB4926B7151E97486270449C8F84AB4167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 971 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 240 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1090 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1857 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 529 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CC6CFA7B6751FFF8C74660FCC40D3C4567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2626 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CC6E723850600015A2C6BAC6C88F891514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 168 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA82527867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 621 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CD11055284C1F524585846BFB03F6EE867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 914 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CD1D7AEBB145784C9665DAA472D55CE267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 520 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF920C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 793 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA16167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 643 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB67814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 702 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CE4E385956165A535376F6D73447D3F767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2918 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 467 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 751 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CEB2F5A09DE2611D752331C16E5BE61F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 307 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CEBDE9089C5A4F125D8DD8D4E6ACD9C467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 355 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C37867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 445 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD0867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1928 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CFB7E0A19AF729834746B283E60F209167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 214 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D1467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 293 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 384 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2431 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 554 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D08928CA73DF435476A35E8ADF64183114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 259 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 335 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 264 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 384 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1777 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D15D1F955440960DB3C5206BF3EEE29E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1977 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B234067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 779 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 667 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 237 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 181 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D20F0AF7810B74883E42451F5810F92667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 839 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D24532DF36691735DACEF9DD7062845467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1946 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AEC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 566 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 509 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1289 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 282 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1044 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D46819E08D3CDD954897218A7EB7C8C067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1100 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D49E38D9D1357F6225DB42AC5AD5ED7E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 991 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D51441AC892832CAA5031DFFA5F3545014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1905 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D51872E4871C96F9D4DDBFAF9C4DF2EA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1124 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 427 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 227 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 88 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1038 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D5F089B3901176BD3F7658EA70DA247367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 313 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 705 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC6554114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 473 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 281 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D779A8F555F6BCC207B905D5D6C2285367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 903 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D8256B42DA32121F3B83617DD03F402467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 398 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 4063 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D87A6F5674B92E17575B5F1479772CA967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 455 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A46285914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1178 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D8F151290BCF14625BA5E4CD26A7FB1E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1068 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D8F2A64376DB87D5A7AB48BFE3760B0B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1016 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB9067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 230 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1161 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D965DDAA766509A8449374C475416C0667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3628 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 316 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 638 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1981 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DA79BC51C090F498913A417759345DF467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1653 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 178 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 297 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 264 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DBAB0A8061EF77EEA47B4AA55BAA583C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 208 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DC3FD651AB93A0CE9D668FE4206D1A8667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 625 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 292 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF38567467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 640 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 490 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 210 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 514 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 457 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DCEECAA726E5CD1EE674B0FDA1B1DA0B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 352 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A66867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 128 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 711 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DD48495FAB2341AA078121E9286C071767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 202 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DD49CD888784736545A3066AC257FBFF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 575 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 246 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DDE0AA7C839DD601590297B5D523D03B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 788 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C78767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 314 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DE31628D815724B7B422A1012BAA0C3767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 778 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DE3953D86837855582C4B8B9F38D7FD667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 358 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 180 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAF67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 378 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 611 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DF2DA17EFC0F6336210C74066809B75367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 355 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA1667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 961 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 852 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/DFB937A17182FF8FB5EABF3F70A58B0867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 169 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E02371BEF7596435E8F90267E0362E096EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 753 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E03A76801FF279689473D2E5A1B193F267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 490 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1360 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E0F63513A18DD0126288BC98B9F4039467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 417 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E139611EBF30A11F71B774B00CB422D667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 659 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E19493E35A1B212412F37B3A7079D5AD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1323 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 729 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E29BCA3E51B6B75E0E5EFF171850166967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 545 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 187 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E2D8402A42C488B43E823D056683EE7067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 442 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E22567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 341 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E34865BFB20F9D165069B84AE521800467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 369 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E37E6F74461E0075B61AF24790D37C7167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 978 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E3A6838E914945B67D684750F42B90B267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 143 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 795 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E48647CD11476AB33349258EA43C50F20C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1166 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 324 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E542C07D0131DF56A89D92F80416C17567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 595 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E5529B4EE3E3DFEBAAC551606BEAEC6114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 227 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 365 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 708 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19F67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 658 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E656D3A6BB3675CEC995C2C398DA729367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 331 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1342 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF5867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 476 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E7291659349564D1AF91AD63517FDDE767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 602 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 519 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E7692F6F4FEC56E165A881DE3F8A965167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 188 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E778DA34B5EC9B33527CC22435275C7667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 692 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 400 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 295 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E89367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 103 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E89664B.pygtex -rw-r--r-- root/root 1055 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E8FC03C2B925F09D2849BD1DDCBB384867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 267 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1719 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 359 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E963D1B8D3330FC994CC39110B64203867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1311 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/E9F207F5DA488246642864EBF9EA466D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 576 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EA2967473FD2864501AEB5123E3D579D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 415 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EA8748814B0C57E7E4D7F8619D00D04314FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1181 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EAE190D91CC491562308EE568F98636867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 503 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1845 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED214FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 188 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1750 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ECC0A1626B0ABEA9CD4E0A0DA9142CD414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2014 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1436 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/ED23259F6CF56D8483B68EF02BB7325067B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 193 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB247667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 831 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 149 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EE5558D4A829B63692DC55F8215FD3310C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1938 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EE7361AC934053D42AE642DBF97DE34A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 867 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 180 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/EFB8602799AD543446B386107A8147F767B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 273 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F01452391D049758B3588D8F37184AA114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 952 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F155F8EF3B63ECD9B6708A42B8F5F72A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 922 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F114FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2107 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 186 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC3950C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 643 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F1D514FF0D281415CACA329B41D1275667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1086 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 2963 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F31773576B5C3B14C8BCFC3D71E2671467B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 630 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 749 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F45B7CF5E8DCF44722DA12A77C5BD96967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1021 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1387 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC78367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1203 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F52B50369F8EBC15506CCA30EE3F873367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 788 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 3350 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 292 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 393 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 293 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F55715342346472744E837C465922E6E0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 351 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 731 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F62235DAC4152853E8C6EBBD7E2D286167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3072 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874D67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 264 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C6867B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 987 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F7725E37E412C564C008C3BCECB547CD67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1588 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F20190C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 127 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F7E0F1384D5EE10CDFEDB2428F50CCC667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 653 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F7FFCC027B254744B7B47314F48923FE67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 200 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 308 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 222 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D4167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 367 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 1794 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F90D3141F79DD2447A9059C65E1C6B4367B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 547 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F99AB908B88D7B819F597C02D259A52B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 496 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F9C8B11D1FC2422B35CE8DD6A855273967B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 285 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 445 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FA669D1E3279749AAAA27A72F3B445330C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 3129 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 972 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928A67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 609 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE191167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 2301 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D0C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 291 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B04567B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 539 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034B67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1250 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEB67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1283 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB08167B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 532 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 1125 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FE862EFCF9F786EA3C4D97E3821A5CAA67B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 213 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 80 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FECB9DCFA3C63121DB586752E42159900C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 318 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A237144770C640781732628151051B15D85C9070A.pygtex -rw-r--r-- root/root 1266 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FF01A8BA64DD59AF7C1265FFBD6C1B5267B6D4EEEA70E83368C1BFCE3E22EA7D.pygtex -rw-r--r-- root/root 3376 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FF8B764D5420CEF9ECE1CDD6385A3BDC14FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 887 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F6414FA033DCB1376922271CBD58A8A4A36.pygtex -rw-r--r-- root/root 844 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default-pyg-prefix.pygstyle.gz -rw-r--r-- root/root 870 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/_minted-Tutorial/default.pygstyle.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/api/ -rw-r--r-- root/root 3813 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/api/conf.py.gz -rw-r--r-- root/root 683 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/api/index.rst -rw-r--r-- root/root 154675 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf.gz -rw-r--r-- root/root 15533 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/biopdb_faq.tex.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/cookbook/ -rw-r--r-- root/root 579 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/cookbook/README drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/ -rw-r--r-- root/root 150096 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.html -rw-r--r-- root/root 17591 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md.gz -rw-r--r-- root/root 6481 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/doc.rst.gz -rw-r--r-- root/root 6569 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/doc.tex.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/examples/ -rw-r--r-- root/root 1697 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py.gz -rw-r--r-- root/root 1576 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/PF05371_seed.sth -rw-r--r-- root/root 48621 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv.gz -rw-r--r-- root/root 2673 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py.gz -rw-r--r-- root/root 156 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/alpha.faa -rw-r--r-- root/root 161 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/beta.faa -rw-r--r-- root/root 1823 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/clustal_run.py -rw-r--r-- root/root 43005 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt.gz -rw-r--r-- root/root 2094 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/fasta_dictionary.py -rw-r--r-- root/root 940 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/fasta_iterator.py -rw-r--r-- root/root 2563 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/getgene.py.gz -rw-r--r-- root/root 10880 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta.gz -rw-r--r-- root/root 29659 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz.gz -rw-r--r-- root/root 20040 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bz2 -rw-r--r-- root/root 24371 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz -rw-r--r-- root/root 1263 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/m_cold.fasta -rw-r--r-- root/root 8127 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml.gz -rw-r--r-- root/root 2068 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/my_blat.psl drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/examples/nmr/ -rw-r--r-- root/root 1489 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/nmr/noed.xpk -rw-r--r-- root/root 2324 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py.gz -rw-r--r-- root/root 1179 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln.gz -rw-r--r-- root/root 352 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/opuntia.dnd -rw-r--r-- root/root 847 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta.gz -rw-r--r-- root/root 25 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/simple.dnd -rw-r--r-- root/root 728 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/swissprot.py -rw-r--r-- root/root 1753 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/examples/www_blast.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/ -rw-r--r-- root/root 3736 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.dia -rw-r--r-- root/root 87976 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png -rw-r--r-- root/root 4939 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png -rw-r--r-- root/root 4744 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png -rw-r--r-- root/root 20502 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png -rw-r--r-- root/root 19950 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png -rw-r--r-- root/root 3660 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.dia -rw-r--r-- root/root 88753 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png -rw-r--r-- root/root 244139 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png -rw-r--r-- root/root 7955 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf.gz -rw-r--r-- root/root 21711 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.svg -rw-r--r-- root/root 135570 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png -rw-r--r-- root/root 64156 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png -rw-r--r-- root/root 121222 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_old.jpg -rw-r--r-- root/root 29744 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png -rw-r--r-- root/root 19480 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png -rw-r--r-- root/root 29392 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png -rw-r--r-- root/root 40974 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png -rw-r--r-- root/root 18633 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png -rw-r--r-- root/root 16158 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png -rw-r--r-- root/root 25057 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png -rw-r--r-- root/root 66217 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png -rw-r--r-- root/root 11714 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png -rw-r--r-- root/root 13914 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png -rw-r--r-- root/root 13097 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png -rw-r--r-- root/root 23575 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png -rw-r--r-- root/root 15045 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png -rw-r--r-- root/root 11739 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png -rw-r--r-- root/root 17436 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png -rw-r--r-- root/root 56612 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png -rw-r--r-- root/root 5301 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png -rw-r--r-- root/root 14401 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png -rw-r--r-- root/root 12798 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf.gz -rw-r--r-- root/root 13699 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png -rw-r--r-- root/root 2251 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/smcra.dia -rw-r--r-- root/root 7332 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/smcra.eps.gz -rw-r--r-- root/root 17774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/smcra.png -rw-r--r-- root/root 30994 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf.gz -rw-r--r-- root/root 235073 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png -rw-r--r-- root/root 70957 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png -rw-r--r-- root/root 262081 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png -rw-r--r-- root/root 58209 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png -rw-r--r-- root/root 52 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Doc/version.in -rw-r--r-- root/root 47 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Doc/version.sh -rw-r--r-- root/root 943 2021-08-22 17:54 ./usr/share/doc/python-biopython-doc/README.test drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/ -rw-r--r-- root/root 582 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/.coveragerc drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Abi/ -rw-r--r-- root/root 88721 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1.gz -rw-r--r-- root/root 107223 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1.gz -rw-r--r-- root/root 137756 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1.gz -rw-r--r-- root/root 142685 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1.gz -rw-r--r-- root/root 132727 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1.gz -rw-r--r-- root/root 26 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/fake.ab1 -rw-r--r-- root/root 98979 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1.gz -rw-r--r-- root/root 172089 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1.gz -rw-r--r-- root/root 28649 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa.gz -rw-r--r-- root/root 2400 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Abi/test_data.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Ace/ -rw-r--r-- root/root 4443 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace.gz -rw-r--r-- root/root 7280 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace.gz -rw-r--r-- root/root 2231 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Affy/ -rw-r--r-- root/root 1716 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Affy/affy_v3_example.CEL -rw-r--r-- root/root 1079 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Affy/affy_v4_example.CEL drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Align/ -rw-r--r-- root/root 1679 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/bsubtilis.fa -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/bsubtilis.txt -rw-r--r-- root/root 9101 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/cow.fa.gz -rw-r--r-- root/root 140 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/cow.txt -rw-r--r-- root/root 1670 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/ecoli.fa -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/ecoli.txt -rw-r--r-- root/root 3360 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/hg38.chrom.sizes.gz -rw-r--r-- root/root 9400 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/pig.fa.gz -rw-r--r-- root/root 140 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Align/pig.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/BWA/ -rw-r--r-- root/root 9109 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq.gz -rw-r--r-- root/root 9300 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq.gz -rw-r--r-- root/root 54629 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/BioSQL/ -rw-r--r-- root/root 7231 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql.gz -rw-r--r-- root/root 9198 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql.gz -rw-r--r-- root/root 2856 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql.gz -rw-r--r-- root/root 19165 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Blast/ -rw-r--r-- root/root 1453 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/README.txt.gz -rw-r--r-- root/root 28066 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Blast/html_msgid_29_blastx_001.html -rw-r--r-- root/root 4879 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab.gz -rw-r--r-- root/root 18813 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml.gz -rw-r--r-- root/root 2633 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_actin.xml -rw-r--r-- root/root 980 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_disco.xml -rw-r--r-- root/root 2220 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_orchid.xml -rw-r--r-- root/root 2270 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_pcr.xml -rw-r--r-- root/root 841 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_short_empty.xml -rw-r--r-- root/root 899 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_short_result.xml -rw-r--r-- root/root 71 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/mock_wait.html -rw-r--r-- root/root 1108 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_001.txt -rw-r--r-- root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_002.txt -rw-r--r-- root/root 305 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_003.txt -rw-r--r-- root/root 803 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_004.txt -rw-r--r-- root/root 1789 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_005.txt -rw-r--r-- root/root 97 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_006.txt -rw-r--r-- root/root 646 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_007.txt -rw-r--r-- root/root 1087 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_008.txt -rw-r--r-- root/root 641 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_009.txt -rw-r--r-- root/root 1274 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_010.txt -rw-r--r-- root/root 1857 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt.gz -rw-r--r-- root/root 1815 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_012.txt -rw-r--r-- root/root 633 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_013.txt -rw-r--r-- root/root 944 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastn_001.txt -rw-r--r-- root/root 28755 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt.gz -rw-r--r-- root/root 1380 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_001.txt.gz -rw-r--r-- root/root 3008 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_002.txt -rw-r--r-- root/root 1725 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_003.txt.gz -rw-r--r-- root/root 2794 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastn_004.txt -rw-r--r-- root/root 3677 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_001.txt -rw-r--r-- root/root 1556 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_002.txt -rw-r--r-- root/root 4713 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_003.txt.gz -rw-r--r-- root/root 2079 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_004.txt.gz -rw-r--r-- root/root 2165 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_005.txt -rw-r--r-- root/root 3129 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_006.txt.gz -rw-r--r-- root/root 2333 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastp_007.txt.gz -rw-r--r-- root/root 1954 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_001.txt.gz -rw-r--r-- root/root 1658 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_blastx_002.txt -rw-r--r-- root/root 1744 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_001.txt.gz -rw-r--r-- root/root 12420 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_002.txt.gz -rw-r--r-- root/root 12009 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_phiblast_003.txt.gz -rw-r--r-- root/root 2367 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_001.txt.gz -rw-r--r-- root/root 1661 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastn_002.txt -rw-r--r-- root/root 5423 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2010L_tblastx_001.txt.gz -rw-r--r-- root/root 2498 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_001.txt.gz -rw-r--r-- root/root 3009 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_002.txt -rw-r--r-- root/root 3628 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_003.txt.gz -rw-r--r-- root/root 2794 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastn_004.txt -rw-r--r-- root/root 2942 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_001.txt -rw-r--r-- root/root 1560 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_002.txt -rw-r--r-- root/root 4713 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_003.txt.gz -rw-r--r-- root/root 2079 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_004.txt.gz -rw-r--r-- root/root 2171 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_005.txt -rw-r--r-- root/root 3131 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_006.txt.gz -rw-r--r-- root/root 2330 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastp_007.txt.gz -rw-r--r-- root/root 1952 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_001.txt.gz -rw-r--r-- root/root 1657 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_blastx_002.txt -rw-r--r-- root/root 1887 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_001.txt.gz -rw-r--r-- root/root 12178 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_002.txt.gz -rw-r--r-- root/root 9814 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_phiblast_003.txt.gz -rw-r--r-- root/root 2364 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_001.txt.gz -rw-r--r-- root/root 1661 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastn_002.txt -rw-r--r-- root/root 5419 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2011L_tblastx_001.txt.gz -rw-r--r-- root/root 22759 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2012L_psiblast_001.txt.gz -rw-r--r-- root/root 2491 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_blastn_001.txt.gz -rw-r--r-- root/root 1719 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2014L_psiblast_001.txt.gz -rw-r--r-- root/root 1330 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2102L_blastn_001.txt -rw-r--r-- root/root 2314 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2201L_blastx_001.txt -rw-r--r-- root/root 829 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastn_001.txt -rw-r--r-- root/root 692 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastn_002.txt -rw-r--r-- root/root 6236 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2202L_blastp_001.txt.gz -rw-r--r-- root/root 2616 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2208L_psiblast_001.txt -rw-r--r-- root/root 1509 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2215L_blastx_001.txt -rw-r--r-- root/root 3068 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2216L_tblastn_001.txt.gz -rw-r--r-- root/root 2835 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_001.txt.gz -rw-r--r-- root/root 1471 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2220L_blastx_002.txt.gz -rw-r--r-- root/root 3560 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2221L_blastp_001.txt.gz -rw-r--r-- root/root 4712 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2222L_blastx_001.txt.gz -rw-r--r-- root/root 4388 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2222_blastx_001.txt.gz -rw-r--r-- root/root 755 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_001.txt -rw-r--r-- root/root 2877 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_002.txt.gz -rw-r--r-- root/root 1857 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_003.txt.gz -rw-r--r-- root/root 3143 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastn_004.txt.gz -rw-r--r-- root/root 1249 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_001.txt -rw-r--r-- root/root 2901 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_002.txt.gz -rw-r--r-- root/root 2329 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_003.txt.gz -rw-r--r-- root/root 2849 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastp_004.txt.gz -rw-r--r-- root/root 888 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_001.txt -rw-r--r-- root/root 2246 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_002.txt.gz -rw-r--r-- root/root 3305 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_003.txt.gz -rw-r--r-- root/root 2406 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_blastx_004.txt.gz -rw-r--r-- root/root 891 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_001.txt -rw-r--r-- root/root 3526 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_002.txt -rw-r--r-- root/root 2871 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_003.txt.gz -rw-r--r-- root/root 2629 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastn_004.txt.gz -rw-r--r-- root/root 849 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_001.txt -rw-r--r-- root/root 2408 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_002.txt.gz -rw-r--r-- root/root 4104 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_003.txt.gz -rw-r--r-- root/root 4577 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2226_tblastx_004.txt.gz -rw-r--r-- root/root 4594 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/text_2230_blastp_001.txt.gz -rw-r--r-- root/root 41938 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz.gz -rw-r--r-- root/root 29608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.gz -rw-r--r-- root/root 1256 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml.gz -rw-r--r-- root/root 36788 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml.gz -rw-r--r-- root/root 14723 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml.gz -rw-r--r-- root/root 38109 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml.gz -rw-r--r-- root/root 5915 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml.gz -rw-r--r-- root/root 1831 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_blastp_001.xml -rw-r--r-- root/root 7745 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml.gz -rw-r--r-- root/root 2858 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml.gz -rw-r--r-- root/root 2954 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_002.xml -rw-r--r-- root/root 7929 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml.gz -rw-r--r-- root/root 10981 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml.gz -rw-r--r-- root/root 2996 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml.gz -rw-r--r-- root/root 1983 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_002.xml -rw-r--r-- root/root 2213 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml.gz -rw-r--r-- root/root 1590 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml.gz -rw-r--r-- root/root 3027 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml.gz -rw-r--r-- root/root 1187 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml.gz -rw-r--r-- root/root 3062 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml.gz -rw-r--r-- root/root 2029 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_002.xml -rw-r--r-- root/root 1947 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml.gz -rw-r--r-- root/root 1964 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml.gz -rw-r--r-- root/root 3010 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml.gz -rw-r--r-- root/root 2750 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml.gz -rw-r--r-- root/root 1979 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_002.xml -rw-r--r-- root/root 2676 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml.gz -rw-r--r-- root/root 2564 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml.gz -rw-r--r-- root/root 2956 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml.gz -rw-r--r-- root/root 1980 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_002.xml -rw-r--r-- root/root 1536 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml.gz -rw-r--r-- root/root 2187 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml.gz -rw-r--r-- root/root 2936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml.gz -rw-r--r-- root/root 5611 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml.gz -rw-r--r-- root/root 1982 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_002.xml -rw-r--r-- root/root 5426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml.gz -rw-r--r-- root/root 4314 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml.gz -rw-r--r-- root/root 2383 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001.xml.gz -rw-r--r-- root/root 2519 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001_v2.xml.gz -rw-r--r-- root/root 104687 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001.xml.gz -rw-r--r-- root/root 161815 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001_v2.xml.gz -rw-r--r-- root/root 2135 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001.xml.gz -rw-r--r-- root/root 2390 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001_v2.xml.gz -rw-r--r-- root/root 2348 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001.xml.gz -rw-r--r-- root/root 2561 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001_v2.xml.gz -rw-r--r-- root/root 9244 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001.xml.gz -rw-r--r-- root/root 9668 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001_v2.xml.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/ -rw-r--r-- root/root 1065 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/README.txt -rw-r--r-- root/root 828 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/mirna.pslx -rw-r--r-- root/root 2451 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_001.psl -rw-r--r-- root/root 427 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_002.psl -rw-r--r-- root/root 693 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_003.psl -rw-r--r-- root/root 2185 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_004.psl -rw-r--r-- root/root 2024 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_005.psl -rw-r--r-- root/root 1257 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_001.psl -rw-r--r-- root/root 841 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_002.psl -rw-r--r-- root/root 4087 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_34_001.pslx -rw-r--r-- root/root 427 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_34_002.pslx -rw-r--r-- root/root 837 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_34_003.pslx -rw-r--r-- root/root 3677 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_34_004.pslx -rw-r--r-- root/root 3660 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_34_005.pslx -rw-r--r-- root/root 2173 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Blat/pslx_35_002.pslx drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/CDAO/ -rw-r--r-- root/root 4529 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cellosaurus/ -rw-r--r-- root/root 377 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cellosaurus/cell_lines_1.txt -rw-r--r-- root/root 1507 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cellosaurus/cell_lines_2.txt -rw-r--r-- root/root 190 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cellosaurus/cell_lines_3.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/ -rw-r--r-- root/root 3401 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/cw02.aln -rw-r--r-- root/root 1524 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln.gz -rw-r--r-- root/root 2972 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/odd_consensus.aln -rw-r--r-- root/root 2482 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/opuntia.aln -rw-r--r-- root/root 1748 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln.gz -rw-r--r-- root/root 1994 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Cluster/ -rw-r--r-- root/root 750 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cluster/README -rw-r--r-- root/root 3110 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Cluster/cyano.txt.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/CodonUsage/ -rw-r--r-- root/root 27698 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Compass/ -rw-r--r-- root/root 1803 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Compass/comtest1 -rw-r--r-- root/root 1497 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Compass/comtest2 drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/EMBL/ -rw-r--r-- root/root 501 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/101ma_no_coords.embl -rw-r--r-- root/root 1054 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/A04195.imgt -rw-r--r-- root/root 1838 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl.gz -rw-r--r-- root/root 9206 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl.gz -rw-r--r-- root/root 2736 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/DD231055_edited.embl -rw-r--r-- root/root 2722 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/DD231055_edited2.embl -rw-r--r-- root/root 3640 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/DS830848.embl -rw-r--r-- root/root 9821 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl.gz -rw-r--r-- root/root 1883 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/RepBase23.02.embl -rw-r--r-- root/root 4799 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl.gz -rw-r--r-- root/root 2358 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl.gz -rw-r--r-- root/root 6338 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl.gz -rw-r--r-- root/root 2736 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/embl_with_0_line.embl -rw-r--r-- root/root 2586 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl.gz -rw-r--r-- root/root 9157 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/hla_3260_sample.imgt.gz -rw-r--r-- root/root 4320 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/kipo_prt_sample.embl.gz -rw-r--r-- root/root 462 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/location_wrap.embl -rw-r--r-- root/root 2074 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/patents.embl -rw-r--r-- root/root 448 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/EMBL/xx_after_co.embl drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Emboss/ -rw-r--r-- root/root 1233 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3.gz -rw-r--r-- root/root 5052 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3.gz -rw-r--r-- root/root 1670 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/alignret.txt -rw-r--r-- root/root 923 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/bac_find.primer3 -rw-r--r-- root/root 321 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/bac_find.psearch -rw-r--r-- root/root 452 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/cds_forward.primer3 -rw-r--r-- root/root 168 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/cds_reverse.primer3 -rw-r--r-- root/root 2123 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/emboss_pair_aln_full_blank_line.txt.gz -rw-r--r-- root/root 456 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/internal_oligo.primer3 -rw-r--r-- root/root 3222 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/matcher_pair.txt -rw-r--r-- root/root 893 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/matcher_simple.txt -rw-r--r-- root/root 1526 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt.gz -rw-r--r-- root/root 3988 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt.gz -rw-r--r-- root/root 1020 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3.gz -rw-r--r-- root/root 95 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/short.primer3 -rw-r--r-- root/root 1214 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/water.txt -rw-r--r-- root/root 989 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Emboss/water2.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Entrez/ -rw-r--r-- root/root 3476 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/biosample.xml -rw-r--r-- root/root 1643 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/efetch_schemas.xml -rw-r--r-- root/root 810 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml.gz -rw-r--r-- root/root 895 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml.gz -rw-r--r-- root/root 1165 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/einfo1.xml -rw-r--r-- root/root 2817 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml.gz -rw-r--r-- root/root 5840 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml.gz -rw-r--r-- root/root 473 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/einfo4.xml -rw-r--r-- root/root 1274 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml.gz -rw-r--r-- root/root 1210 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink2.xml -rw-r--r-- root/root 2068 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml.gz -rw-r--r-- root/root 1375 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml.gz -rw-r--r-- root/root 967 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink5.xml -rw-r--r-- root/root 3372 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink6.xml -rw-r--r-- root/root 812 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml.gz -rw-r--r-- root/root 312 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/elink8.xml -rw-r--r-- root/root 314 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/epost1.xml -rw-r--r-- root/root 218 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/epost2.xml -rw-r--r-- root/root 363 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/epost3.xml -rw-r--r-- root/root 672 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch1.xml -rw-r--r-- root/root 3786 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch2.xml -rw-r--r-- root/root 997 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch3.xml -rw-r--r-- root/root 880 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch4.xml -rw-r--r-- root/root 2575 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch5.xml -rw-r--r-- root/root 727 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch6.xml -rw-r--r-- root/root 649 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch7.xml -rw-r--r-- root/root 506 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esearch8.xml -rw-r--r-- root/root 363 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/espell.xml -rw-r--r-- root/root 3791 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary1.xml -rw-r--r-- root/root 3943 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary2.xml -rw-r--r-- root/root 1609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary3.xml -rw-r--r-- root/root 1666 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary4.xml -rw-r--r-- root/root 2261 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary5.xml -rw-r--r-- root/root 1603 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary6.xml -rw-r--r-- root/root 1206 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary7.xml -rw-r--r-- root/root 258 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary8.xml -rw-r--r-- root/root 1594 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/esummary9.xml.gz -rw-r--r-- root/root 1529 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml.gz -rw-r--r-- root/root 2375 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml.gz -rw-r--r-- root/root 2169 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml.gz -rw-r--r-- root/root 2273 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide2.xml -rw-r--r-- root/root 1487 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml.gz -rw-r--r-- root/root 2297 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml.gz -rw-r--r-- root/root 3220 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml.gz -rw-r--r-- root/root 3792 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed3.html -rw-r--r-- root/root 5650 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed4.xml.gz -rw-r--r-- root/root 4185 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed5.xml.gz -rw-r--r-- root/root 4085 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed6.xml.gz -rw-r--r-- root/root 3962 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed7.xml.gz -rw-r--r-- root/root 1005 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Enzymes/ -rw-r--r-- root/root 147 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Enzymes/lactate.txt -rw-r--r-- root/root 615 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Enzymes/lipoprotein.txt -rw-r--r-- root/root 277 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Enzymes/proline.txt -rw-r--r-- root/root 180 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Enzymes/valine.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/ -rw-r--r-- root/root 1847 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/README.txt -rw-r--r-- root/root 2557 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn.gz -rw-r--r-- root/root 3236 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn.gz -rw-r--r-- root/root 3868 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn.gz -rw-r--r-- root/root 2869 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -rw-r--r-- root/root 3868 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn.gz -rw-r--r-- root/root 776 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_dna2protein.exn -rw-r--r-- root/root 2476 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn.gz -rw-r--r-- root/root 2655 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn.gz -rw-r--r-- root/root 3176 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn.gz -rw-r--r-- root/root 2795 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn.gz -rw-r--r-- root/root 2998 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -rw-r--r-- root/root 3025 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn.gz -rw-r--r-- root/root 1633 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn.gz -rw-r--r-- root/root 4607 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn.gz -rw-r--r-- root/root 1508 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_o_vulgar.exn -rw-r--r-- root/root 2394 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -rw-r--r-- root/root 454 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -rw-r--r-- root/root 384 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -rw-r--r-- root/root 6010 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn.gz -rw-r--r-- root/root 2497 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -rw-r--r-- root/root 205 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_none.exn drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/ -rw-r--r-- root/root 2929 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/FSSP/ -rw-r--r-- root/root 190702 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Fasta/ -rw-r--r-- root/root 2507 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/README -rw-r--r-- root/root 145 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/aster.pro -rw-r--r-- root/root 145 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/aster_no_wrap.pro -rw-r--r-- root/root 1135 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/centaurea.nu -rw-r--r-- root/root 129 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/dups.fasta -rw-r--r-- root/root 2204 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/elderberry.nu -rw-r--r-- root/root 179 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/f001 -rw-r--r-- root/root 1742 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/f002 -rw-r--r-- root/root 392 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/f003 -rw-r--r-- root/root 809 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/fa01 -rw-r--r-- root/root 1092 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz -rw-r--r-- root/root 683 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/lavender.nu -rw-r--r-- root/root 401 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/loveliesbleeding.pro -rw-r--r-- root/root 922 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/lupine.nu -rw-r--r-- root/root 2462 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10.gz -rw-r--r-- root/root 4862 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10.gz -rw-r--r-- root/root 1865 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10.gz -rw-r--r-- root/root 3919 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output004.m10 -rw-r--r-- root/root 3914 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output005.m10 -rw-r--r-- root/root 2816 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output006.m10 -rw-r--r-- root/root 3967 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10.gz -rw-r--r-- root/root 4415 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10.gz -rw-r--r-- root/root 2083 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10.gz -rw-r--r-- root/root 982 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output010.m10 -rw-r--r-- root/root 1567 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10.gz -rw-r--r-- root/root 2138 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10.gz -rw-r--r-- root/root 2271 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10.gz -rw-r--r-- root/root 975 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output014.m10 -rw-r--r-- root/root 3366 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output015.m10 -rw-r--r-- root/root 5070 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10.gz -rw-r--r-- root/root 801 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/phlox.nu -rw-r--r-- root/root 701 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/rose.pro -rw-r--r-- root/root 535 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/rosemary.pro -rw-r--r-- root/root 412 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/sweetpea.nu -rw-r--r-- root/root 2771 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Fasta/wisteria.nu drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/GFF/ -rw-r--r-- root/root 8072 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk.gz -rw-r--r-- root/root 3114 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna.gz -rw-r--r-- root/root 3101 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna.gz -rw-r--r-- root/root 3114 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna.gz -rw-r--r-- root/root 84 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GFF/multi.fna drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Gck/ -rw-r--r-- root/root 1565 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Gck/artificial.gck drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/GenBank/ -rw-r--r-- root/root 1767 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp.gz -rw-r--r-- root/root 3973 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/DS830848.gb -rw-r--r-- root/root 2267 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk.gz -rw-r--r-- root/root 2262 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978_output.gbk.gz -rw-r--r-- root/root 3812 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/GU949562.1.gb -rw-r--r-- root/root 1960 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk.gz -rw-r--r-- root/root 1956 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502_output.gbk.gz -rw-r--r-- root/root 2106 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk.gz -rw-r--r-- root/root 2104 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485_output.gbk.gz -rw-r--r-- root/root 15564 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa.gz -rw-r--r-- root/root 92273 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz.gz -rw-r--r-- root/root 87949 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.gz -rw-r--r-- root/root 2981 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.faa -rw-r--r-- root/root 2386 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn.gz -rw-r--r-- root/root 3351 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna.gz -rw-r--r-- root/root 9926 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb.gz -rw-r--r-- root/root 2228 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.tsv -rw-r--r-- root/root 2996 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts.gz -rw-r--r-- root/root 3394 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/NT_019265.gb -rw-r--r-- root/root 45090 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb.gz -rw-r--r-- root/root 3680 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb.gz -rw-r--r-- root/root 2490 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap.gb -rw-r--r-- root/root 1292 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_CDS.gb -rw-r--r-- root/root 3459 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_fuzzy.gb.gz -rw-r--r-- root/root 1746 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_linear.gb -rw-r--r-- root/root 3721 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/blank_seq.gb -rw-r--r-- root/root 4401 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz.gz -rw-r--r-- root/root 4302 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.gz -rw-r--r-- root/root 2387 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/dbsource_wrap.gb -rw-r--r-- root/root 3231 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/empty_accession.gbk.gz -rw-r--r-- root/root 3302 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb.gz -rw-r--r-- root/root 3230 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/empty_version.gbk.gz -rw-r--r-- root/root 77506 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb.gz -rw-r--r-- root/root 3887 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq.gz -rw-r--r-- root/root 3253 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb.gz -rw-r--r-- root/root 3298 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb.gz -rw-r--r-- root/root 3339 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb.gz -rw-r--r-- root/root 2383 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_structured_comment.gb.gz -rw-r--r-- root/root 2138 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb.gz -rw-r--r-- root/root 3541 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb.gz -rw-r--r-- root/root 3250 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb.gz -rw-r--r-- root/root 649 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/no_origin_no_end.gb -rw-r--r-- root/root 1985 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb.gz -rw-r--r-- root/root 2955 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb.gz -rw-r--r-- root/root 1908 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/origin_line.gb -rw-r--r-- root/root 3131 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb.gz -rw-r--r-- root/root 2799 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/pri1.gb -rw-r--r-- root/root 2157 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq.gb -rw-r--r-- root/root 3107 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb.gz -rw-r--r-- root/root 1988 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/qualifier_escaping_read.gb -rw-r--r-- root/root 1568 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/qualifier_escaping_write.gb -rw-r--r-- root/root 1890 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/tls_KDHP01000000.gb -rw-r--r-- root/root 2211 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/tsa_acropora.gb -rw-r--r-- root/root 3273 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Geo/ -rw-r--r-- root/root 2894 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/GSE16.txt -rw-r--r-- root/root 2931 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/GSM645.txt -rw-r--r-- root/root 2655 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/GSM691.txt -rw-r--r-- root/root 2834 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/GSM700.txt -rw-r--r-- root/root 2894 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/GSM804.txt -rw-r--r-- root/root 2497 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt.gz -rw-r--r-- root/root 1795 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt.gz -rw-r--r-- root/root 3831 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt.gz -rw-r--r-- root/root 6667 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt.gz -rw-r--r-- root/root 2559 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt.gz -rw-r--r-- root/root 1760 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_series.txt drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Graphics/ -rw-r--r-- root/root 97 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Graphics/README drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/ -rw-r--r-- root/root 7458 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits.hhr.gz -rw-r--r-- root/root 316 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -rw-r--r-- root/root 216 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -rw-r--r-- root/root 7596 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhsearch.hhr.gz -rw-r--r-- root/root 5488 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr.gz -rw-r--r-- root/root 16909 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr.gz -rw-r--r-- root/root 972 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/README.txt -rw-r--r-- root/root 1518 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/allx.hhr.gz -rw-r--r-- root/root 10469 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/hhpred_9590198.hhr.gz -rw-r--r-- root/root 5521 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/ -rw-r--r-- root/root 3378 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/README.txt -rw-r--r-- root/root 3354 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmscan_001.out -rw-r--r-- root/root 582 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmscan_002.out -rw-r--r-- root/root 798 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmscan_003.out -rw-r--r-- root/root 988 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmscan_004.out -rw-r--r-- root/root 836 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out.gz -rw-r--r-- root/root 1389 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out.gz -rw-r--r-- root/root 3229 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -rw-r--r-- root/root 2230 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_30_hmmscan_001.out -rw-r--r-- root/root 476 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_30_hmmscan_002.out -rw-r--r-- root/root 655 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_30_hmmscan_003.out -rw-r--r-- root/root 808 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_30_hmmscan_004.out -rw-r--r-- root/root 2974 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_31b1_hmmscan_001.out -rw-r--r-- root/root 1950 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/tab_31b1_hmmsearch_001.out -rw-r--r-- root/root 32399 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out.gz -rw-r--r-- root/root 1977 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_21_hmmpfam_001.out -rw-r--r-- root/root 2471 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmpfam_001.out -rw-r--r-- root/root 2658 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out.gz -rw-r--r-- root/root 10329 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out.gz -rw-r--r-- root/root 1573 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_002.out -rw-r--r-- root/root 1470 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_003.out -rw-r--r-- root/root 1273 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out.gz -rw-r--r-- root/root 7595 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out.gz -rw-r--r-- root/root 4816 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out.gz -rw-r--r-- root/root 1936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_002.out -rw-r--r-- root/root 3298 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_003.out -rw-r--r-- root/root 4065 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_004.out -rw-r--r-- root/root 2063 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out.gz -rw-r--r-- root/root 2231 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out.gz -rw-r--r-- root/root 1411 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out.gz -rw-r--r-- root/root 2035 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out.gz -rw-r--r-- root/root 3199 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out.gz -rw-r--r-- root/root 49591 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out.gz -rw-r--r-- root/root 2009 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_001.out -rw-r--r-- root/root 4853 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out.gz -rw-r--r-- root/root 1619 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out.gz -rw-r--r-- root/root 4140 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out.gz -rw-r--r-- root/root 5229 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out.gz -rw-r--r-- root/root 5264 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out.gz -rw-r--r-- root/root 4182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out.gz -rw-r--r-- root/root 22593 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out.gz -rw-r--r-- root/root 3463 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out.gz -rw-r--r-- root/root 3597 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out.gz -rw-r--r-- root/root 6894 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/ -rw-r--r-- root/root 2811 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt.gz -rw-r--r-- root/root 2008 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt.gz -rw-r--r-- root/root 3529 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/vpu_nucaligned.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/InterProScan/ -rw-r--r-- root/root 3470 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/KEGG/ -rw-r--r-- root/root 2722 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/compound.irregular -rw-r--r-- root/root 4338 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample.gz -rw-r--r-- root/root 45254 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter.gz -rw-r--r-- root/root 2492 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.irregular -rw-r--r-- root/root 3931 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.new -rw-r--r-- root/root 298245 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample.gz -rw-r--r-- root/root 3860 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/gene.sample -rw-r--r-- root/root 5199 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml.gz -rw-r--r-- root/root 1969 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml.gz -rw-r--r-- root/root 158609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml.gz -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml.gz -rw-r--r-- root/root 1115 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea.gz -rw-r--r-- root/root 631521 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png -rw-r--r-- root/root 53180 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/MAF/ -rw-r--r-- root/root 1138 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/bug2453.maf -rw-r--r-- root/root 733 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/bundle_without_target.maf -rw-r--r-- root/root 3615 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/cnksr3.fa -rw-r--r-- root/root 1614 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx.gz -rw-r--r-- root/root 7701 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf.gz -rw-r--r-- root/root 33 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/invalid.idx -rw-r--r-- root/root 1406 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/length_coords_mismatch.maf -rw-r--r-- root/root 17122 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf.gz -rw-r--r-- root/root 1649 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex.gz -rw-r--r-- root/root 17125 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf.gz -rw-r--r-- root/root 1653 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex.gz -rw-r--r-- root/root 605948 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf.gz -rw-r--r-- root/root 23896 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex.gz -rw-r--r-- root/root 1285 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_test.maf -rw-r--r-- root/root 456 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx.gz -rw-r--r-- root/root 1618 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Mauve/ -rw-r--r-- root/root 6744 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa.gz -rw-r--r-- root/root 159 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa.backbone -rw-r--r-- root/root 42 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa.bbcols -rw-r--r-- root/root 6253 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa.gz -rw-r--r-- root/root 1164 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Mauve/simple_short.xmfa drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Medline/ -rw-r--r-- root/root 1218 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result1.txt -rw-r--r-- root/root 3655 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt.gz -rw-r--r-- root/root 3469 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result3.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/ -rw-r--r-- root/root 2888 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta3.out -rw-r--r-- root/root 1344 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out.gz -rw-r--r-- root/root 1217 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out.gz -rw-r--r-- root/root 1232 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out.gz -rw-r--r-- root/root 1110 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out.gz -rw-r--r-- root/root 2459 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out.gz -rw-r--r-- root/root 1775 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out.gz -rw-r--r-- root/root 2815 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/NBRF/ -rw-r--r-- root/root 22272 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir.gz -rw-r--r-- root/root 3665 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir.gz -rw-r--r-- root/root 2428 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NBRF/DMA_nuc.pir -rw-r--r-- root/root 1435 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NBRF/DMB_prot.pir -rw-r--r-- root/root 1148 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NMR/ -rw-r--r-- root/root 1489 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NMR/noed.xpk -rw-r--r-- root/root 2364 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NMR/out_example.xpk drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/NeXML/ -rw-r--r-- root/root 3926 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml.gz -rw-r--r-- root/root 1423 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/edgelabels.xml -rw-r--r-- root/root 2103 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/meta_taxa.xml -rw-r--r-- root/root 1717 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/meta_types.xml -rw-r--r-- root/root 329 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/nexml.xml -rw-r--r-- root/root 1989 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/phenoscape.xml -rw-r--r-- root/root 1326 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/sets.xml -rw-r--r-- root/root 3162 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/taxa.xml -rw-r--r-- root/root 1694 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml.gz -rw-r--r-- root/root 3547 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/tolweb.xml -rw-r--r-- root/root 11133 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml.gz -rw-r--r-- root/root 1451 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/trees-uris.xml -rw-r--r-- root/root 1460 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeuralNetwork/ -rw-r--r-- root/root 1275 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeuralNetwork/enolase.fasta -rw-r--r-- root/root 731 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/NeuralNetwork/repeat.fasta drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Nexus/ -rw-r--r-- root/root 19 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/ByteOrderMarkFile.nwk -rw-r--r-- root/root 15033 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex.gz -rw-r--r-- root/root 578 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/codonposset.nex -rw-r--r-- root/root 1027 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/int_node_labels.nwk -rw-r--r-- root/root 817 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/test.new -rw-r--r-- root/root 3592 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/test_Nexus_input.nex -rw-r--r-- root/root 3841 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -rw-r--r-- root/root 4194 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex.gz -rw-r--r-- root/root 4578 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/ -rw-r--r-- root/root 57 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_even.fa -rw-r--r-- root/root 33 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_even_bigendian.nib -rw-r--r-- root/root 33 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_even_littleendian.nib -rw-r--r-- root/root 51 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_odd.fa -rw-r--r-- root/root 31 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_odd_bigendian.nib -rw-r--r-- root/root 31 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Nib/test_odd_littleendian.nib drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/ -rw-r--r-- root/root 531 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/aa_alignment.phylip -rw-r--r-- root/root 1579 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/alignment.phylip -rw-r--r-- root/root 1579 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/dottednames.phylip -rw-r--r-- root/root 3462 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/dottednum.fasta -rw-r--r-- root/root 3616 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/longnames.fasta -rw-r--r-- root/root 2539 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/ -rw-r--r-- root/root 85 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/README.txt -rw-r--r-- root/root 25 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/bad1.ctl -rw-r--r-- root/root 32 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/bad2.ctl -rw-r--r-- root/root 14 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/bad3.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml.ctl drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/ -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/SE.ctl -rw-r--r-- root/root 1771 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/baseml.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model0.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model1.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model2.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model3.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model4.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model5.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model6.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model7.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/model8.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nhomo1.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nhomo3.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nhomo4.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nparK1.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nparK2.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nparK3.ctl -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/baseml/nparK4.ctl drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/ -rw-r--r-- root/root 371 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/NSsite3.ctl -rw-r--r-- root/root 350 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/SE.ctl -rw-r--r-- root/root 360 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/aa_model0.ctl -rw-r--r-- root/root 363 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -rw-r--r-- root/root 355 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/all_NSsites.ctl -rw-r--r-- root/root 359 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/branchsiteA.ctl -rw-r--r-- root/root 359 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/clademodelC.ctl -rw-r--r-- root/root 349 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/codeml.ctl -rw-r--r-- root/root 358 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/freeratio.ctl -rw-r--r-- root/root 346 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/m2a_rel.ctl -rw-r--r-- root/root 1576 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -rw-r--r-- root/root 1603 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -rw-r--r-- root/root 1575 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -rw-r--r-- root/root 357 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/codeml/pairwise.ctl -rw-r--r-- root/root 84 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/species.tree -rw-r--r-- root/root 711 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00.ctl drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00/ -rw-r--r-- root/root 717 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00/yn00.ctl -rw-r--r-- root/root 788 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -rw-r--r-- root/root 803 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -rw-r--r-- root/root 785 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Control_files/yn00/yn00_long.ctl drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/ -rw-r--r-- root/root 149 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/bad_results.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/ drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/ -rw-r--r-- root/root 1916 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_1.out -rw-r--r-- root/root 1957 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_3.out -rw-r--r-- root/root 1933 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_4.out -rw-r--r-- root/root 1941 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_4c.out -rw-r--r-- root/root 1936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_5.out -rw-r--r-- root/root 1926 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_6.out -rw-r--r-- root/root 1950 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/SE/SE-4_7.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/alpha1rho1/ -rw-r--r-- root/root 2144 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -rw-r--r-- root/root 2138 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -rw-r--r-- root/root 2152 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -rw-r--r-- root/root 2348 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/baseml_SE.out -rw-r--r-- root/root 1088 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/baseml_alpha1rho1.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/ -rw-r--r-- root/root 1870 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_1.out -rw-r--r-- root/root 1863 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_3.out -rw-r--r-- root/root 1904 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_4.out -rw-r--r-- root/root 1904 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_4c.out -rw-r--r-- root/root 1731 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_5.out -rw-r--r-- root/root 1844 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_6.out -rw-r--r-- root/root 1838 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model0-4_7.out -rw-r--r-- root/root 1781 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_1.out -rw-r--r-- root/root 1774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_3.out -rw-r--r-- root/root 1800 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_4.out -rw-r--r-- root/root 1800 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_4c.out -rw-r--r-- root/root 1757 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_5.out -rw-r--r-- root/root 1775 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_6.out -rw-r--r-- root/root 1789 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model1-4_7.out -rw-r--r-- root/root 1577 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_1.out -rw-r--r-- root/root 1570 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_3.out -rw-r--r-- root/root 1576 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_4.out -rw-r--r-- root/root 1576 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_4c.out -rw-r--r-- root/root 1553 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_5.out -rw-r--r-- root/root 1571 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_6.out -rw-r--r-- root/root 1565 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model2-4_7.out -rw-r--r-- root/root 1775 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_1.out -rw-r--r-- root/root 1768 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_3.out -rw-r--r-- root/root 1774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_4.out -rw-r--r-- root/root 1774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_4c.out -rw-r--r-- root/root 1751 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_5.out -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_6.out -rw-r--r-- root/root 1783 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model3-4_7.out -rw-r--r-- root/root 1785 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_1.out -rw-r--r-- root/root 1778 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_3.out -rw-r--r-- root/root 1804 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_4.out -rw-r--r-- root/root 1804 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_4c.out -rw-r--r-- root/root 1761 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_5.out -rw-r--r-- root/root 1779 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_6.out -rw-r--r-- root/root 1773 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model4-4_7.out -rw-r--r-- root/root 1781 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_1.out -rw-r--r-- root/root 1774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_3.out -rw-r--r-- root/root 1800 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_4.out -rw-r--r-- root/root 1780 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_4c.out -rw-r--r-- root/root 1757 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_5.out -rw-r--r-- root/root 1775 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_6.out -rw-r--r-- root/root 1769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model5-4_7.out -rw-r--r-- root/root 1821 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_1.out -rw-r--r-- root/root 1815 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_3.out -rw-r--r-- root/root 1821 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_4.out -rw-r--r-- root/root 1821 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_4c.out -rw-r--r-- root/root 1798 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_5.out -rw-r--r-- root/root 1796 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_6.out -rw-r--r-- root/root 1790 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model6-4_7.out -rw-r--r-- root/root 2180 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_1.out -rw-r--r-- root/root 2156 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_3.out -rw-r--r-- root/root 2182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_4.out -rw-r--r-- root/root 2182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_4c.out -rw-r--r-- root/root 2159 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_5.out -rw-r--r-- root/root 2177 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_6.out -rw-r--r-- root/root 2151 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model7-4_7.out -rw-r--r-- root/root 2319 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_1.out -rw-r--r-- root/root 2296 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_3.out -rw-r--r-- root/root 2316 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_4.out -rw-r--r-- root/root 2322 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_4c.out -rw-r--r-- root/root 2279 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_5.out -rw-r--r-- root/root 2311 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_6.out -rw-r--r-- root/root 2291 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/model/model8-4_7.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/ -rw-r--r-- root/root 1667 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -rw-r--r-- root/root 1652 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -rw-r--r-- root/root 1658 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -rw-r--r-- root/root 1658 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -rw-r--r-- root/root 1635 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -rw-r--r-- root/root 1653 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -rw-r--r-- root/root 1647 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -rw-r--r-- root/root 2575 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -rw-r--r-- root/root 2567 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -rw-r--r-- root/root 2573 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -rw-r--r-- root/root 2573 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -rw-r--r-- root/root 2553 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -rw-r--r-- root/root 2571 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -rw-r--r-- root/root 2562 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -rw-r--r-- root/root 2606 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -rw-r--r-- root/root 2595 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -rw-r--r-- root/root 2600 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -rw-r--r-- root/root 2600 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -rw-r--r-- root/root 2578 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -rw-r--r-- root/root 2595 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -rw-r--r-- root/root 2592 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/ -rw-r--r-- root/root 1834 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -rw-r--r-- root/root 1828 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -rw-r--r-- root/root 1822 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -rw-r--r-- root/root 1850 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -rw-r--r-- root/root 1864 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -rw-r--r-- root/root 1858 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -rw-r--r-- root/root 2258 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -rw-r--r-- root/root 2252 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -rw-r--r-- root/root 2246 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -rw-r--r-- root/root 2294 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -rw-r--r-- root/root 2288 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -rw-r--r-- root/root 2262 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/versions/ -rw-r--r-- root/root 2151 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/versions/baseml41.out -rw-r--r-- root/root 2148 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/versions/baseml43.out -rw-r--r-- root/root 2153 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/versions/baseml44.out -rw-r--r-- root/root 2173 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/baseml/versions/baseml44c.out drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/ -rw-r--r-- root/root 1760 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out.gz -rw-r--r-- root/root 1922 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out.gz -rw-r--r-- root/root 1919 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out.gz -rw-r--r-- root/root 1922 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out.gz -rw-r--r-- root/root 1916 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/ -rw-r--r-- root/root 1710 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out.gz -rw-r--r-- root/root 1910 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out.gz -rw-r--r-- root/root 1871 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out.gz -rw-r--r-- root/root 1875 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out.gz -rw-r--r-- root/root 1860 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out.gz -rw-r--r-- root/root 1899 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out.gz -rw-r--r-- root/root 1868 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/ -rw-r--r-- root/root 2286 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -rw-r--r-- root/root 2499 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -rw-r--r-- root/root 2515 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -rw-r--r-- root/root 2515 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -rw-r--r-- root/root 2342 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -rw-r--r-- root/root 2537 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -rw-r--r-- root/root 2524 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/ -rw-r--r-- root/root 2183 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -rw-r--r-- root/root 2183 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -rw-r--r-- root/root 2199 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -rw-r--r-- root/root 2199 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -rw-r--r-- root/root 2026 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -rw-r--r-- root/root 2221 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -rw-r--r-- root/root 2222 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/ -rw-r--r-- root/root 2791 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out.gz -rw-r--r-- root/root 2972 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out.gz -rw-r--r-- root/root 2953 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out.gz -rw-r--r-- root/root 2931 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out.gz -rw-r--r-- root/root 2949 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out.gz -rw-r--r-- root/root 3002 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out.gz -rw-r--r-- root/root 2926 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/ -rw-r--r-- root/root 2002 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out.gz -rw-r--r-- root/root 2176 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out.gz -rw-r--r-- root/root 2164 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out.gz -rw-r--r-- root/root 2177 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out.gz -rw-r--r-- root/root 2174 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out.gz -rw-r--r-- root/root 2149 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out.gz -rw-r--r-- root/root 2168 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/ -rw-r--r-- root/root 2004 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out.gz -rw-r--r-- root/root 2184 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out.gz -rw-r--r-- root/root 2185 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out.gz -rw-r--r-- root/root 2197 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out.gz -rw-r--r-- root/root 2169 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out.gz -rw-r--r-- root/root 2171 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out.gz -rw-r--r-- root/root 2173 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/ -rw-r--r-- root/root 1895 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out.gz -rw-r--r-- root/root 2006 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out.gz -rw-r--r-- root/root 2011 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out.gz -rw-r--r-- root/root 2013 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out.gz -rw-r--r-- root/root 1984 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out.gz -rw-r--r-- root/root 1988 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out.gz -rw-r--r-- root/root 1975 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/ -rw-r--r-- root/root 1917 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out.gz -rw-r--r-- root/root 1918 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out.gz -rw-r--r-- root/root 1921 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out.gz -rw-r--r-- root/root 1911 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ -rw-r--r-- root/root 5742 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out.gz -rw-r--r-- root/root 8691 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out.gz -rw-r--r-- root/root 8694 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out.gz -rw-r--r-- root/root 8693 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out.gz -rw-r--r-- root/root 8676 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out.gz -rw-r--r-- root/root 8677 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out.gz -rw-r--r-- root/root 8675 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ -rw-r--r-- root/root 15557 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out.gz -rw-r--r-- root/root 12576 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out.gz -rw-r--r-- root/root 12296 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out.gz -rw-r--r-- root/root 12289 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ -rw-r--r-- root/root 5804 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out.gz -rw-r--r-- root/root 8753 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out.gz -rw-r--r-- root/root 8754 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out.gz -rw-r--r-- root/root 8751 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out.gz -rw-r--r-- root/root 8736 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out.gz -rw-r--r-- root/root 8756 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out.gz -rw-r--r-- root/root 8734 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/ -rw-r--r-- root/root 1695 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out.gz -rw-r--r-- root/root 1710 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out.gz -rw-r--r-- root/root 1692 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out.gz -rw-r--r-- root/root 1706 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out.gz -rw-r--r-- root/root 1679 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out.gz -rw-r--r-- root/root 1692 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out.gz -rw-r--r-- root/root 1688 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out.gz -rw-r--r-- root/root 7094 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/ -rw-r--r-- root/root 2212 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out.gz -rw-r--r-- root/root 2212 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out.gz -rw-r--r-- root/root 2425 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out.gz -rw-r--r-- root/root 2425 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out.gz -rw-r--r-- root/root 2382 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out.gz -rw-r--r-- root/root 2383 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out.gz -rw-r--r-- root/root 2383 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out.gz -rw-r--r-- root/root 2396 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_8.out.gz -rw-r--r-- root/root 2400 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out.gz -rw-r--r-- root/root 4106 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out.gz -rw-r--r-- root/root 4130 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_long-4_8.out.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Trees/ -rw-r--r-- root/root 30 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Trees/bad.tree -rw-r--r-- root/root 1124 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Trees/lysin.trees -rw-r--r-- root/root 527 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Trees/lysin.trees.4.6 -rw-r--r-- root/root 84 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/Trees/species.tree -rw-r--r-- root/root 1814 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PDB/ -rw-r--r-- root/root 10295 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa.gz -rw-r--r-- root/root 24449 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif.gz -rw-r--r-- root/root 6957 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf.gz -rw-r--r-- root/root 18071 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb.gz -rw-r--r-- root/root 2401 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa.gz -rw-r--r-- root/root 6936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.xyzr.gz -rw-r--r-- root/root 106373 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1AS5.cif.gz -rw-r--r-- root/root 84629 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif.gz -rw-r--r-- root/root 54627 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb.gz -rw-r--r-- root/root 2218 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1MOM_min.cif -rw-r--r-- root/root 962 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1SSU_mod.cif -rw-r--r-- root/root 360 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/1SSU_mod.pdb -rw-r--r-- root/root 377677 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.cif.gz -rw-r--r-- root/root 6313 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp.gz -rw-r--r-- root/root 34769 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb.gz -rw-r--r-- root/root 6132 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp.gz -rw-r--r-- root/root 105534 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif.gz -rw-r--r-- root/root 339325 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.cif.gz -rw-r--r-- root/root 283064 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb.gz -rw-r--r-- root/root 6310 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/2n0n_M1.pdb.gz -rw-r--r-- root/root 16288 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/3JQH.cif.gz -rw-r--r-- root/root 62164 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif.gz -rw-r--r-- root/root 11135 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf.gz -rw-r--r-- root/root 351 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/4Q9R_min.cif -rw-r--r-- root/root 63245 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif.gz -rw-r--r-- root/root 18659 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf.gz -rw-r--r-- root/root 2038 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/Miller_RASA.txt -rw-r--r-- root/root 2368 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/Sander_RASA.txt -rw-r--r-- root/root 2341 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/Wilke_RASA.txt -rw-r--r-- root/root 15035 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.cif.gz -rw-r--r-- root/root 18498 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb.gz -rw-r--r-- root/root 1182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/alignment_file.fa -rw-r--r-- root/root 463 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/d256ba_.ent -rw-r--r-- root/root 4014 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/disordered.pdb -rw-r--r-- root/root 2997 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt.gz -rw-r--r-- root/root 405 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/header.pdb -rw-r--r-- root/root 190 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/ions.pdb -rw-r--r-- root/root 955 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/lib_10_z_5.txt.gz -rw-r--r-- root/root 368 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PDB/occupancy.pdb drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PQR/ -rw-r--r-- root/root 23486 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PQR/1A80.pqr.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Phd/ -rw-r--r-- root/root 10779 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phd/phd1.gz -rw-r--r-- root/root 1973 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phd/phd2 -rw-r--r-- root/root 544 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phd/phd_454 -rw-r--r-- root/root 740 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phd/phd_solexa drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/ -rw-r--r-- root/root 521 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/hennigian.phy -rw-r--r-- root/root 521 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/horses.phy -rw-r--r-- root/root 527 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/horses.tree -rw-r--r-- root/root 1575 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/interlaced.phy -rw-r--r-- root/root 709 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/interlaced2.phy -rw-r--r-- root/root 521 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/random.phy -rw-r--r-- root/root 159 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/reference_dna.phy -rw-r--r-- root/root 329 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/reference_dna2.phy -rw-r--r-- root/root 1569 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/sequential.phy -rw-r--r-- root/root 575 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Phylip/sequential2.phy drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/ -rw-r--r-- root/root 3925 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml.gz -rw-r--r-- root/root 5221 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml.gz -rw-r--r-- root/root 1609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/distribution.xml -rw-r--r-- root/root 882 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/example.xml -rw-r--r-- root/root 1566 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml.gz -rw-r--r-- root/root 8460 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml.gz -rw-r--r-- root/root 2657 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/PopGen/ -rw-r--r-- root/root 282 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/README -rw-r--r-- root/root 5046 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen.gz -rw-r--r-- root/root 345 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/c2line.gen -rw-r--r-- root/root 364 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/c2space.gen -rw-r--r-- root/root 436 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/c3line.gen -rw-r--r-- root/root 434 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/c3space.gen -rw-r--r-- root/root 3153 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen.gz -rw-r--r-- root/root 290 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/haplo2.gen -rw-r--r-- root/root 326 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/PopGen/haplo3.gen drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/ -rw-r--r-- root/root 2641 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt.gz -rw-r--r-- root/root 2771 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00113.txt -rw-r--r-- root/root 2612 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00144.txt -rw-r--r-- root/root 3485 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00149.txt -rw-r--r-- root/root 3920 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00340.txt -rw-r--r-- root/root 3340 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00424.txt -rw-r--r-- root/root 3603 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00472.txt -rw-r--r-- root/root 3493 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00640.txt -rw-r--r-- root/root 2333 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00787.txt -rw-r--r-- root/root 2596 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00933.txt -rw-r--r-- root/root 4221 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc.gz -rw-r--r-- root/root 18823 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt.gz -rw-r--r-- root/root 805 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00159.txt -rw-r--r-- root/root 3204 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00165.txt -rw-r--r-- root/root 3217 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt.gz -rw-r--r-- root/root 3944 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00488.txt -rw-r--r-- root/root 3610 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Prosite/ps00546.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Quality/ -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_diff_ids.fastq -rw-r--r-- root/root 669 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_double_qual.fastq -rw-r--r-- root/root 669 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_double_seq.fastq -rw-r--r-- root/root 609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_long_qual.fastq -rw-r--r-- root/root 482 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_no_qual.fastq -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_del.fastq -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_escape.fastq -rw-r--r-- root/root 610 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_null.fastq -rw-r--r-- root/root 609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_space.fastq -rw-r--r-- root/root 609 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_tab.fastq -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_unit_sep.fastq -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_qual_vtab.fastq -rw-r--r-- root/root 607 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_short_qual.fastq -rw-r--r-- root/root 628 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_spaces.fastq -rw-r--r-- root/root 629 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_tabs.fastq -rw-r--r-- root/root 548 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_at_plus.fastq -rw-r--r-- root/root 582 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_at_qual.fastq -rw-r--r-- root/root 522 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_at_seq.fastq -rw-r--r-- root/root 562 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_in_plus.fastq -rw-r--r-- root/root 607 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_in_qual.fastq -rw-r--r-- root/root 535 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_in_seq.fastq -rw-r--r-- root/root 513 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/error_trunc_in_title.fastq -rw-r--r-- root/root 150 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example.fasta -rw-r--r-- root/root 234 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example.fastq -rw-r--r-- root/root 175 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example.fastq.bgz -rw-r--r-- root/root 297 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example.qual -rw-r--r-- root/root 246 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example_dos.fastq -rw-r--r-- root/root 180 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/example_dos.fastq.bgz -rw-r--r-- root/root 131 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/illumina_faked.fastq -rw-r--r-- root/root 426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/illumina_full_range_as_illumina.fastq -rw-r--r-- root/root 426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/illumina_full_range_as_sanger.fastq -rw-r--r-- root/root 426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/illumina_full_range_as_solexa.fastq -rw-r--r-- root/root 426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/illumina_full_range_original_illumina.fastq -rw-r--r-- root/root 3242 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq.gz -rw-r--r-- root/root 3218 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq.gz -rw-r--r-- root/root 3242 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq.gz -rw-r--r-- root/root 3382 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq.gz -rw-r--r-- root/root 767 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_dna_as_illumina.fastq -rw-r--r-- root/root 767 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_dna_as_sanger.fastq -rw-r--r-- root/root 767 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_dna_as_solexa.fastq -rw-r--r-- root/root 767 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_dna_original_sanger.fastq -rw-r--r-- root/root 774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_rna_as_illumina.fastq -rw-r--r-- root/root 774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_rna_as_sanger.fastq -rw-r--r-- root/root 774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_rna_as_solexa.fastq -rw-r--r-- root/root 774 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/misc_rna_original_sanger.fastq -rw-r--r-- root/root 237 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq -rw-r--r-- root/root 131 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_faked.fastq -rw-r--r-- root/root 550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_full_range_as_illumina.fastq -rw-r--r-- root/root 550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_full_range_as_sanger.fastq -rw-r--r-- root/root 550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_full_range_as_solexa.fastq -rw-r--r-- root/root 550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/sanger_full_range_original_sanger.fastq -rw-r--r-- root/root 608 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_example.fastq -rw-r--r-- root/root 136 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_faked.fastq -rw-r--r-- root/root 450 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_full_range_as_illumina.fastq -rw-r--r-- root/root 450 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_full_range_as_sanger.fastq -rw-r--r-- root/root 450 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_full_range_as_solexa.fastq -rw-r--r-- root/root 450 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/solexa_full_range_original_solexa.fastq -rw-r--r-- root/root 458 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/tricky.fastq -rw-r--r-- root/root 963 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/wrapping_as_illumina.fastq -rw-r--r-- root/root 963 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/wrapping_as_sanger.fastq -rw-r--r-- root/root 963 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/wrapping_as_solexa.fastq -rw-r--r-- root/root 975 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/wrapping_original_sanger.fastq -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Quality/zero_length.fastq drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/ -rw-r--r-- root/root 7545 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/bamii.htm -rw-r--r-- root/root 1336 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/bamii.txt -rw-r--r-- root/root 6133 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/cac81.htm -rw-r--r-- root/root 890 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/cac81.txt -rw-r--r-- root/root 7319 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/crei.htm -rw-r--r-- root/root 1620 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/crei.txt -rw-r--r-- root/root 7530 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/foki.htm -rw-r--r-- root/root 1531 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/foki.txt -rw-r--r-- root/root 7331 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/pvuii.htm -rw-r--r-- root/root 1271 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/pvuii.txt -rw-r--r-- root/root 7307 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/taqi.htm -rw-r--r-- root/root 1265 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Rebase/taqi.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Registry/ -rw-r--r-- root/root 2735 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat.gz -rw-r--r-- root/root 3684 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Registry/bt001 -rw-r--r-- root/root 662 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Registry/seqs.fasta drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/Roche/ -rw-r--r-- root/root 9019 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff.gz -rw-r--r-- root/root 9019 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff.gz -rw-r--r-- root/root 9025 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff.gz -rw-r--r-- root/root 9268 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff.gz -rw-r--r-- root/root 9302 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff.gz -rw-r--r-- root/root 8997 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff.gz -rw-r--r-- root/root 3222 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.fasta -rw-r--r-- root/root 2112 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual.gz -rw-r--r-- root/root 9261 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -rw-r--r-- root/root 3483 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -rw-r--r-- root/root 2326 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual.gz -rw-r--r-- root/root 1568 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/README.txt -rw-r--r-- root/root 29130 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff.gz -rw-r--r-- root/root 38081 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff.gz -rw-r--r-- root/root 34149 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff.gz -rw-r--r-- root/root 25126 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff.gz -rw-r--r-- root/root 1466 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx.gz -rw-r--r-- root/root 1493 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/SCOP/ -rw-r--r-- root/root 1302 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/dir.cla.scop.txt_test -rw-r--r-- root/root 663 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/dir.des.scop.txt_test -rw-r--r-- root/root 388 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/dir.hie.scop.txt_test -rw-r--r-- root/root 1310 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/ -rw-r--r-- root/root 434 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -rw-r--r-- root/root 24 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -rw-r--r-- root/root 8 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -rw-r--r-- root/root 380 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SCOP/testDom.txt drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Saf/ -rw-r--r-- root/root 3672 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Saf/saf1.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ -rw-r--r-- root/root 17706 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam.gz -rw-r--r-- root/root 17728 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam.gz -rw-r--r-- root/root 17914 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam.gz -rw-r--r-- root/root 17936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam.gz -rw-r--r-- root/root 124622 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam.gz -rw-r--r-- root/root 3225 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.fa -rw-r--r-- root/root 109551 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam.gz -rw-r--r-- root/root 124719 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam.gz -rw-r--r-- root/root 109610 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam.gz -rw-r--r-- root/root 124668 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam.gz -rw-r--r-- root/root 1014 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/readme.txt -rw-r--r-- root/root 17679 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam.gz -rw-r--r-- root/root 17809 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/ -rw-r--r-- root/root 2916 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/corrupt_example1.xml -rw-r--r-- root/root 406 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/corrupt_example2.xml -rw-r--r-- root/root 3481 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/dna_example.xml -rw-r--r-- root/root 770 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/global_species_example.xml -rw-r--r-- root/root 2011 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/protein_example.xml -rw-r--r-- root/root 1117 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SeqXML/rna_example.xml drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/SnapGene/ -rw-r--r-- root/root 15518 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SnapGene/pFA-KanMX4.dna.gz -rw-r--r-- root/root 5783 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-d.dna.gz -rw-r--r-- root/root 5889 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-e.dna.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Stockholm/ -rw-r--r-- root/root 2433 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Stockholm/funny.sth -rw-r--r-- root/root 740 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Stockholm/simple.sth drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/ -rw-r--r-- root/root 334 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/aaDistrib.txt -rw-r--r-- root/root 3658 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/acc_rep_mat.pik -rw-r--r-- root/root 136 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/protein_count.txt -rw-r--r-- root/root 238 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/protein_freq.txt -rw-r--r-- root/root 114 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/redAADistrib.txt -rw-r--r-- root/root 132 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SubsMat/redAltAADistrib.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/ -rw-r--r-- root/root 3377 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.txt -rw-r--r-- root/root 2111 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml.gz -rw-r--r-- root/root 2184 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/H2CNN8.txt -rw-r--r-- root/root 3804 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/H2CNN8.xml -rw-r--r-- root/root 3661 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/O23729.txt -rw-r--r-- root/root 1938 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/P0A186.txt.gz -rw-r--r-- root/root 3814 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/P0CK95.txt.gz -rw-r--r-- root/root 2348 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/P60137.txt.gz -rw-r--r-- root/root 3676 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/P84001.xml -rw-r--r-- root/root 2726 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/P97881.xml.gz -rw-r--r-- root/root 4346 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt.gz -rw-r--r-- root/root 5313 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml.gz -rw-r--r-- root/root 2550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/R5HY77.xml.gz -rw-r--r-- root/root 1479 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/README -rw-r--r-- root/root 3251 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/keywlist.txt -rw-r--r-- root/root 1343 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/keywlist2.txt -rw-r--r-- root/root 3242 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.fasta -rw-r--r-- root/root 1719 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff.gz -rw-r--r-- root/root 56 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.list -rw-r--r-- root/root 39291 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf.gz -rw-r--r-- root/root 23566 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt.gz -rw-r--r-- root/root 28395 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml.gz -rw-r--r-- root/root 3268 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp001 -rw-r--r-- root/root 2803 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp002 -rw-r--r-- root/root 3146 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp003.gz -rw-r--r-- root/root 2364 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp005 -rw-r--r-- root/root 2471 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp006 -rw-r--r-- root/root 2912 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp007 -rw-r--r-- root/root 5353 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp008.gz -rw-r--r-- root/root 2859 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp009 -rw-r--r-- root/root 3027 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp010.gz -rw-r--r-- root/root 4041 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp011.gz -rw-r--r-- root/root 1580 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp012 -rw-r--r-- root/root 1182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp013 -rw-r--r-- root/root 1115 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp015 -rw-r--r-- root/root 4586 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016.gz -rw-r--r-- root/root 1597 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001.gz -rw-r--r-- root/root 3008 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002.gz -rw-r--r-- root/root 6301 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/ -rw-r--r-- root/root 296 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/adam_refs.tre -rw-r--r-- root/root 296 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/consensus_refs.tre -rw-r--r-- root/root 98 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/majority_ref.tre -rw-r--r-- root/root 130 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/msa.phy -rw-r--r-- root/root 544 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/neighbor_trees.tre -rw-r--r-- root/root 120 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/nj.tre -rw-r--r-- root/root 66 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/nj_min.tre -rw-r--r-- root/root 136 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/pars3.tre -rw-r--r-- root/root 296 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/strict_refs.tre -rw-r--r-- root/root 1504 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/test.log -rw-r--r-- root/root 120 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/trees.tre -rw-r--r-- root/root 136 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/TreeConstruction/upgma.tre drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/UniGene/ -rw-r--r-- root/root 2961 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data.gz -rw-r--r-- root/root 1502 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data.gz -rw-r--r-- root/root 1958 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniGene/Mdm_partial.data drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/UniProt/ -rw-r--r-- root/root 12206 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniProt/gene_association.goa_yeast.1.gaf.gz -rw-r--r-- root/root 7810 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gaf.gz -rw-r--r-- root/root 2102 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gpa.59.gpa.gz -rw-r--r-- root/root 9763 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/UniProt/gp_information.goa_yeast.28.gpi.gz drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Wise/ -rw-r--r-- root/root 342 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Wise/human_114_g01_exons.fna_01 -rw-r--r-- root/root 99 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Wise/human_114_g02_exons.fna_01 drwxr-xr-x root/root 0 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Xdna/ -rw-r--r-- root/root 1257 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Xdna/sample-a.xdna -rw-r--r-- root/root 1255 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Xdna/sample-b.xdna -rw-r--r-- root/root 1300 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/Xdna/sample-c.xprt -rw-r--r-- root/root 795 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/biosql.ini.appveyor -rw-r--r-- root/root 706 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/biosql.ini.sample drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/codonalign/ -rw-r--r-- root/root 1004 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln.gz -rw-r--r-- root/root 1224 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/drosophilla.fasta.gz -rw-r--r-- root/root 345 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_id -rw-r--r-- root/root 8092 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa.gz -rw-r--r-- root/root 3698 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln.gz -rw-r--r-- root/root 1244 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/nucl1.fa -rw-r--r-- root/root 2104 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa.gz -rw-r--r-- root/root 3463 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa.gz -rw-r--r-- root/root 3445 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa.gz -rw-r--r-- root/root 1244 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/nucl5.fa -rw-r--r-- root/root 1397 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/pro1.aln -rw-r--r-- root/root 1704 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln.gz -rw-r--r-- root/root 2955 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln.gz -rw-r--r-- root/root 2963 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln.gz -rw-r--r-- root/root 1397 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/codonalign/pro5.aln -rw-r--r-- root/root 9219 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py.gz -rw-r--r-- root/root 1812 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/common_BioSQL_online.py.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/motifs/ -rw-r--r-- root/root 607 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/Arnt.sites -rw-r--r-- root/root 198 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/MA0056.1.transfac -rw-r--r-- root/root 141 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/REB1.pfm -rw-r--r-- root/root 144 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/SRF.pfm -rw-r--r-- root/root 619 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/abdb.xms.gz -rw-r--r-- root/root 2642 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out.gz -rw-r--r-- root/root 316 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/clusterbuster.pfm -rw-r--r-- root/root 316 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/clusterbuster.pfm.out -rw-r--r-- root/root 392798 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -rw-r--r-- root/root 19426 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt.gz -rw-r--r-- root/root 13989 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml.gz -rw-r--r-- root/root 310479 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.adh.de.oops.html.html -rw-r--r-- root/root 30541 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.adh.de.oops.html.txt -rw-r--r-- root/root 26839 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.adh.de.oops.html.xml -rw-r--r-- root/root 273509 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.html -rw-r--r-- root/root 3226 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.txt.gz -rw-r--r-- root/root 1911 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.xml.gz -rw-r--r-- root/root 4057 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/meme.INO_up800.classic.oops.xml.gz -rw-r--r-- root/root 13944 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/meme.adh.classic.oops.xml.gz -rw-r--r-- root/root 11247 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/meme.farntrans5.classic.anr.xml.gz -rw-r--r-- root/root 2281 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/meme.out.gz -rw-r--r-- root/root 3864 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/meme.psp_test.classic.zoops.xml.gz -rw-r--r-- root/root 1786 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/minimal_test.meme -rw-r--r-- root/root 961 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/motifs/transfac.dat drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/msf/ -rw-r--r-- root/root 634 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/msf/DOA_prot.msf.gz -rw-r--r-- root/root 2348 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/msf/W_prot.msf -rw-r--r-- root/root 4529 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/pairwise2_testCases.py.gz drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/phenotype/ -rw-r--r-- root/root 34864 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json.gz -rw-r--r-- root/root 34890 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json.gz -rw-r--r-- root/root 7348 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json.gz -rw-r--r-- root/root 25504 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv.gz -rw-r--r-- root/root 10355 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json.gz -rw-r--r-- root/root 2147 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json.gz -rw-r--r-- root/root 2679 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv.gz -rw-r--r-- root/root 1212 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/requires_internet.py -rw-r--r-- root/root 936 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/requires_wise.py -rw-r--r-- root/root 4278 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/run_tests.py.gz -rw-r--r-- root/root 2148 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/search_tests_common.py.gz -rw-r--r-- root/root 3304 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py.gz -rw-r--r-- root/root 10481 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Ace.py.gz -rw-r--r-- root/root 2826 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Affy.py.gz -rw-r--r-- root/root 9191 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py.gz -rw-r--r-- root/root 3115 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py.gz -rw-r--r-- root/root 3653 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_EmbossIO.py.gz -rw-r--r-- root/root 5684 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py.gz -rw-r--r-- root/root 1928 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py.gz -rw-r--r-- root/root 3279 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py.gz -rw-r--r-- root/root 3643 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignIO_convert.py -rw-r--r-- root/root 1602 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py.gz -rw-r--r-- root/root 873 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Application.py.gz -rw-r--r-- root/root 2031 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py.gz -rw-r--r-- root/root 997 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_MySQLdb_online.py -rw-r--r-- root/root 802 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_mysql_connector.py -rw-r--r-- root/root 1005 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_mysql_connector_online.py -rw-r--r-- root/root 999 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_psycopg2_online.py -rw-r--r-- root/root 2587 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_sqlite3.py -rw-r--r-- root/root 1067 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_BioSQL_sqlite3_online.py -rw-r--r-- root/root 1056 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Blast_Record.py -rw-r--r-- root/root 3695 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_CAPS.py -rw-r--r-- root/root 1159 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Chi2.py -rw-r--r-- root/root 2254 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py.gz -rw-r--r-- root/root 3407 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py.gz -rw-r--r-- root/root 9361 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Cluster.py.gz -rw-r--r-- root/root 5260 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py.gz -rw-r--r-- root/root 1502 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py.gz -rw-r--r-- root/root 4004 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Compass.py -rw-r--r-- root/root 1392 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Consensus.py.gz -rw-r--r-- root/root 2450 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Crystal.py.gz -rw-r--r-- root/root 1310 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py.gz -rw-r--r-- root/root 3074 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_EMBL_unittest.py -rw-r--r-- root/root 7770 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Emboss.py.gz -rw-r--r-- root/root 2110 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py.gz -rw-r--r-- root/root 1863 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Entrez.py.gz -rw-r--r-- root/root 3076 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py.gz -rw-r--r-- root/root 60202 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py.gz -rw-r--r-- root/root 1515 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py.gz -rw-r--r-- root/root 1786 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_ExPASy.py -rw-r--r-- root/root 2882 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_FSSP.py -rw-r--r-- root/root 2099 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py.gz -rw-r--r-- root/root 1182 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_File.py.gz -rw-r--r-- root/root 84835 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GenBank.py.gz -rw-r--r-- root/root 9134 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py.gz -rw-r--r-- root/root 1554 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GraphicsBitmaps.py.gz -rw-r--r-- root/root 12514 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py.gz -rw-r--r-- root/root 2680 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GraphicsDistribution.py -rw-r--r-- root/root 2594 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_GraphicsGeneral.py -rw-r--r-- root/root 1743 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py.gz -rw-r--r-- root/root 3197 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py.gz -rw-r--r-- root/root 2128 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KEGG.py.gz -rw-r--r-- root/root 1434 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py.gz -rw-r--r-- root/root 2308 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py.gz -rw-r--r-- root/root 2761 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics_online.py -rw-r--r-- root/root 1539 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py.gz -rw-r--r-- root/root 1290 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py.gz -rw-r--r-- root/root 1295 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py.gz -rw-r--r-- root/root 4933 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py.gz -rw-r--r-- root/root 2039 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py.gz -rw-r--r-- root/root 3656 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py.gz -rw-r--r-- root/root 4981 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Medline.py.gz -rw-r--r-- root/root 3257 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py.gz -rw-r--r-- root/root 145642 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NCBITextParser.py.gz -rw-r--r-- root/root 17272 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py.gz -rw-r--r-- root/root 4436 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py.gz -rw-r--r-- root/root 4908 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py.gz -rw-r--r-- root/root 1623 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NMR.py.gz -rw-r--r-- root/root 1319 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py.gz -rw-r--r-- root/root 7010 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Nexus.py.gz -rw-r--r-- root/root 2231 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py.gz -rw-r--r-- root/root 3887 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py.gz -rw-r--r-- root/root 1494 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py.gz -rw-r--r-- root/root 1363 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDBList.py.gz -rw-r--r-- root/root 2657 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py.gz -rw-r--r-- root/root 2184 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_Dice.py -rw-r--r-- root/root 3675 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_Disordered.py -rw-r--r-- root/root 1342 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py.gz -rw-r--r-- root/root 1322 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_FragmentMapper.py -rw-r--r-- root/root 1991 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py.gz -rw-r--r-- root/root 5071 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py.gz -rw-r--r-- root/root 1796 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py.gz -rw-r--r-- root/root 3581 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py.gz -rw-r--r-- root/root 2420 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_NACCESS.py -rw-r--r-- root/root 2248 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py.gz -rw-r--r-- root/root 5057 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py.gz -rw-r--r-- root/root 1667 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypetide.py.gz -rw-r--r-- root/root 3872 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py.gz -rw-r--r-- root/root 1734 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_StructureAlignment.py -rw-r--r-- root/root 1208 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py.gz -rw-r--r-- root/root 2550 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py.gz -rw-r--r-- root/root 2519 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py.gz -rw-r--r-- root/root 2160 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py.gz -rw-r--r-- root/root 1668 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PQR.py.gz -rw-r--r-- root/root 1449 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Pathway.py.gz -rw-r--r-- root/root 2790 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phd.py.gz -rw-r--r-- root/root 4598 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phylo.py.gz -rw-r--r-- root/root 6973 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py.gz -rw-r--r-- root/root 3360 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phylo_CDAO.py -rw-r--r-- root/root 3257 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phylo_NeXML.py -rw-r--r-- root/root 3702 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phylo_matplotlib.py -rw-r--r-- root/root 1180 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Phylo_networkx.py -rw-r--r-- root/root 1640 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py.gz -rw-r--r-- root/root 2556 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py.gz -rw-r--r-- root/root 3900 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Probcons_tool.py -rw-r--r-- root/root 2947 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py.gz -rw-r--r-- root/root 1926 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_QCPSuperimposer.py.gz -rw-r--r-- root/root 2534 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_RCSBFormats.py -rw-r--r-- root/root 5034 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Restriction.py.gz -rw-r--r-- root/root 2270 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Astral.py -rw-r--r-- root/root 3408 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Cla.py -rw-r--r-- root/root 1874 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Des.py -rw-r--r-- root/root 1763 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Dom.py -rw-r--r-- root/root 1318 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Hie.py -rw-r--r-- root/root 1433 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py.gz -rw-r--r-- root/root 2353 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Residues.py -rw-r--r-- root/root 1694 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py.gz -rw-r--r-- root/root 637 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SCOP_online.py -rw-r--r-- root/root 1263 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py.gz -rw-r--r-- root/root 3325 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py.gz -rw-r--r-- root/root 1491 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py.gz -rw-r--r-- root/root 9070 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_text.py.gz -rw-r--r-- root/root 14489 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py.gz -rw-r--r-- root/root 3444 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py.gz -rw-r--r-- root/root 3215 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py.gz -rw-r--r-- root/root 2610 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl_index.py -rw-r--r-- root/root 9792 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py.gz -rw-r--r-- root/root 956 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate_text_index.py -rw-r--r-- root/root 969 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate_vulgar_index.py -rw-r--r-- root/root 13851 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py.gz -rw-r--r-- root/root 2174 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10_index.py -rw-r--r-- root/root 4437 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py.gz -rw-r--r-- root/root 4092 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py.gz -rw-r--r-- root/root 6778 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py.gz -rw-r--r-- root/root 2803 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py.gz -rw-r--r-- root/root 1343 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py.gz -rw-r--r-- root/root 2130 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py.gz -rw-r--r-- root/root 1125 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py.gz -rw-r--r-- root/root 7992 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py.gz -rw-r--r-- root/root 3619 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py.gz -rw-r--r-- root/root 2750 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_interproscan_xml.py -rw-r--r-- root/root 1624 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_legacy.py.gz -rw-r--r-- root/root 10006 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py.gz -rw-r--r-- root/root 1490 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py.gz -rw-r--r-- root/root 2258 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py.gz -rw-r--r-- root/root 24975 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py.gz -rw-r--r-- root/root 162228 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py.gz -rw-r--r-- root/root 2275 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py.gz -rw-r--r-- root/root 2460 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Gck.py.gz -rw-r--r-- root/root 1417 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py.gz -rw-r--r-- root/root 2178 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_NibIO.py -rw-r--r-- root/root 1984 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py.gz -rw-r--r-- root/root 6908 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py.gz -rw-r--r-- root/root 2309 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py.gz -rw-r--r-- root/root 1779 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py.gz -rw-r--r-- root/root 2015 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py.gz -rw-r--r-- root/root 9477 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py.gz -rw-r--r-- root/root 5807 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py.gz -rw-r--r-- root/root 3615 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_online.py -rw-r--r-- root/root 2642 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py.gz -rw-r--r-- root/root 3868 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py.gz -rw-r--r-- root/root 2867 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py.gz -rw-r--r-- root/root 6108 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py.gz -rw-r--r-- root/root 4208 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SffIO.py.gz -rw-r--r-- root/root 11923 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SubsMat.py.gz -rw-r--r-- root/root 17560 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py.gz -rw-r--r-- root/root 1573 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py.gz -rw-r--r-- root/root 4270 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py.gz -rw-r--r-- root/root 2403 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py.gz -rw-r--r-- root/root 3117 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Tutorial.py.gz -rw-r--r-- root/root 8844 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_UniGene.py.gz -rw-r--r-- root/root 1714 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py.gz -rw-r--r-- root/root 6462 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py.gz -rw-r--r-- root/root 2806 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_Wise.py -rw-r--r-- root/root 4541 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_align.py.gz -rw-r--r-- root/root 14615 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py.gz -rw-r--r-- root/root 3423 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_bgzf.py.gz -rw-r--r-- root/root 1856 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py.gz -rw-r--r-- root/root 4058 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_codonalign.py.gz -rw-r--r-- root/root 32470 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_geo.py.gz -rw-r--r-- root/root 3468 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_kNN.py -rw-r--r-- root/root 1292 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_lowess.py -rw-r--r-- root/root 17435 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_motifs.py.gz -rw-r--r-- root/root 1707 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_motifs_online.py -rw-r--r-- root/root 844 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_pairwise2.py -rw-r--r-- root/root 792 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_pairwise2_no_C.py -rw-r--r-- root/root 8041 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py.gz -rw-r--r-- root/root 2712 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_phenotype.py.gz -rw-r--r-- root/root 2480 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_phenotype_fit.py -rw-r--r-- root/root 2515 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests/test_phyml_tool.py -rw-r--r-- root/root 15462 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_prodoc.py.gz -rw-r--r-- root/root 28338 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_prosite1.py.gz -rw-r--r-- root/root 8247 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_prosite2.py.gz -rw-r--r-- root/root 1062 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_psw.py.gz -rw-r--r-- root/root 2285 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_raxml_tool.py -rw-r--r-- root/root 2451 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py.gz -rw-r--r-- root/root 6188 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_seq.py.gz -rw-r--r-- root/root 3287 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests/test_translate.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/Tests_avoid/ -rw-r--r-- root/root 784 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_BioSQL_MySQLdb.py -rw-r--r-- root/root 779 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_BioSQL_psycopg2.py -rw-r--r-- root/root 3031 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py.gz -rw-r--r-- root/root 1600 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py.gz -rw-r--r-- root/root 1508 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py.gz -rw-r--r-- root/root 1727 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py.gz -rw-r--r-- root/root 3715 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop.py -rw-r--r-- root/root 1489 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py.gz -rw-r--r-- root/root 1820 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py.gz -rw-r--r-- root/root 2285 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py.gz -rw-r--r-- root/root 1078 2020-09-03 23:14 ./usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf_online.py drwxr-xr-x root/root 0 2021-08-22 17:54 ./usr/share/doc/python-biopython-doc/Tests_fixme/ -rw-r--r-- root/root 1464 2021-08-22 17:54 ./usr/share/doc/python-biopython-doc/Tests_fixme/run_failing_tests -rw-r--r-- root/root 1622 2021-08-30 15:59 ./usr/share/doc/python-biopython-doc/changelog.Debian.gz -rw-r--r-- root/root 2055 2021-08-22 19:52 ./usr/share/doc/python-biopython-doc/copyright -rw-r--r-- root/root 1477 2021-08-22 17:54 ./usr/share/doc/python-biopython-doc/run-unit-test drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 282 2021-08-22 17:54 ./usr/share/lintian/overrides/python-biopython-doc python3-biopython-sql_1.78+dfsg-5ubuntu1_all.deb ------------------------------------------------ new Debian package, version 2.0. size 26066 bytes: control archive=1060 bytes. 659 bytes, 15 lines control 496 bytes, 6 lines md5sums 267 bytes, 12 lines * postinst #!/bin/sh 416 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython-sql Source: python-biopython Version: 1.78+dfsg-5ubuntu1 Architecture: all Maintainer: Ubuntu Developers Installed-Size: 135 Depends: python3:any, python3-biopython Section: python Priority: optional Homepage: https://biopython.org Description: Biopython support for the BioSQL database schema (Python 3) This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2021-08-30 15:59 ./ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/BioSQL/ -rw-r--r-- root/root 23864 2020-09-03 23:14 ./usr/lib/python3/dist-packages/BioSQL/BioSeq.py -rw-r--r-- root/root 33291 2020-09-03 23:14 ./usr/lib/python3/dist-packages/BioSQL/BioSeqDatabase.py -rw-r--r-- root/root 4658 2020-09-03 23:14 ./usr/lib/python3/dist-packages/BioSQL/DBUtils.py -rw-r--r-- root/root 50885 2020-09-03 23:14 ./usr/lib/python3/dist-packages/BioSQL/Loader.py -rw-r--r-- root/root 617 2020-09-03 23:14 ./usr/lib/python3/dist-packages/BioSQL/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python3-biopython-sql/ lrwxrwxrwx root/root 0 2021-08-30 15:59 ./usr/share/doc/python3-biopython-sql/changelog.Debian.gz -> ../python3-biopython/changelog.Debian.gz -rw-r--r-- root/root 2055 2021-08-22 19:52 ./usr/share/doc/python3-biopython-sql/copyright python3-biopython_1.78+dfsg-5ubuntu1_amd64.deb ---------------------------------------------- new Debian package, version 2.0. size 1445764 bytes: control archive=16792 bytes. 1553 bytes, 27 lines control 57903 bytes, 615 lines md5sums 259 bytes, 12 lines * postinst #!/bin/sh 408 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython Source: python-biopython Version: 1.78+dfsg-5ubuntu1 Architecture: amd64 Maintainer: Ubuntu Developers Installed-Size: 9228 Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.9~), python3:any, libc6 (>= 2.14), python3-renderpm, python3-reportlab Recommends: python-biopython-doc (= 1.78+dfsg-5ubuntu1), ncbi-blast+ (>= 2.10.1-3) Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp (>= 4.0.0), emboss, fasttree, mafft, muscle, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-psycopg2, python3-scipy, raxml, samtools, t-coffee, wise, w3-dtd-mathml Breaks: cnvkit (<< 0.9.7-1~) Section: python Priority: optional Homepage: https://biopython.org Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2021-08-30 15:59 ./ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Affy/ -rw-r--r-- root/root 20204 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Affy/CelFile.py -rw-r--r-- root/root 296 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Affy/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Align/ -rw-r--r-- root/root 22515 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/AlignInfo.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Align/Applications/ -rw-r--r-- root/root 10012 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_ClustalOmega.py -rw-r--r-- root/root 20228 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Clustalw.py -rw-r--r-- root/root 10101 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Dialign.py -rw-r--r-- root/root 3444 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_MSAProbs.py -rw-r--r-- root/root 19884 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Mafft.py -rw-r--r-- root/root 35418 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Muscle.py -rw-r--r-- root/root 10544 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Prank.py -rw-r--r-- root/root 5238 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_Probcons.py -rw-r--r-- root/root 4588 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/_TCoffee.py -rw-r--r-- root/root 1035 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/Applications/__init__.py -rw-r--r-- root/root 57823 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/__init__.py -rw-r--r-- root/root 226611 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.c -rw-r--r-- root/root 130288 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/ -rw-r--r-- root/root 16907 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/ -rw-r--r-- root/root 2387 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22 -rw-r--r-- root/root 2387 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6 -rw-r--r-- root/root 2387 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74 -rw-r--r-- root/root 2122 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45 -rw-r--r-- root/root 2122 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50 -rw-r--r-- root/root 2122 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62 -rw-r--r-- root/root 2124 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80 -rw-r--r-- root/root 2122 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90 -rw-r--r-- root/root 2451 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF -rw-r--r-- root/root 1120 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG -rw-r--r-- root/root 2380 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC -rw-r--r-- root/root 2351 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992 -rw-r--r-- root/root 275 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70 -rw-r--r-- root/root 2818 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON -rw-r--r-- root/root 2413 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES -rw-r--r-- root/root 1542 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN -rw-r--r-- root/root 1092 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN -rw-r--r-- root/root 2859 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78 -rw-r--r-- root/root 1171 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4 -rw-r--r-- root/root 2068 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250 -rw-r--r-- root/root 2666 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30 -rw-r--r-- root/root 2666 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70 -rw-r--r-- root/root 1581 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO -rw-r--r-- root/root 2456 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER -rw-r--r-- root/root 25459 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER -rw-r--r-- root/root 1543 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR -rw-r--r-- root/root 402 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/AlignIO/ -rw-r--r-- root/root 12037 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/ClustalIO.py -rw-r--r-- root/root 8752 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/EmbossIO.py -rw-r--r-- root/root 13645 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/FastaIO.py -rw-r--r-- root/root 5621 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/Interfaces.py -rw-r--r-- root/root 34192 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/MafIO.py -rw-r--r-- root/root 13418 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/MauveIO.py -rw-r--r-- root/root 14181 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/MsfIO.py -rw-r--r-- root/root 6026 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/NexusIO.py -rw-r--r-- root/root 17121 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/PhylipIO.py -rw-r--r-- root/root 26261 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/StockholmIO.py -rw-r--r-- root/root 18761 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/AlignIO/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Alphabet/ -rw-r--r-- root/root 1200 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Alphabet/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Application/ -rw-r--r-- root/root 31829 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Application/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Blast/ -rw-r--r-- root/root 66861 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Blast/Applications.py -rw-r--r-- root/root 13270 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Blast/NCBIWWW.py -rw-r--r-- root/root 33677 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py -rw-r--r-- root/root 3929 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Blast/ParseBlastTable.py -rw-r--r-- root/root 16321 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Blast/Record.py -rw-r--r-- root/root 350 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Blast/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/CAPS/ -rw-r--r-- root/root 4041 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/CAPS/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Cluster/ -rw-r--r-- root/root 50805 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Cluster/__init__.py -rw-r--r-- root/root 113944 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 164123 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Cluster/cluster.c -rw-r--r-- root/root 4135 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Cluster/cluster.h -rw-r--r-- root/root 77865 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Cluster/clustermodule.c drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Compass/ -rw-r--r-- root/root 6964 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Compass/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Crystal/ -rw-r--r-- root/root 10700 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Crystal/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Data/ -rw-r--r-- root/root 50383 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Data/CodonTable.py -rw-r--r-- root/root 9248 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Data/IUPACData.py -rw-r--r-- root/root 17337 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Data/SCOPData.py -rw-r--r-- root/root 353 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Data/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Emboss/ -rw-r--r-- root/root 48934 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Emboss/Applications.py -rw-r--r-- root/root 5593 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Emboss/Primer3.py -rw-r--r-- root/root 2529 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Emboss/PrimerSearch.py -rw-r--r-- root/root 355 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Emboss/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Entrez/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/ -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_0.dtd -rw-r--r-- root/root 33675 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_1.dtd -rw-r--r-- root/root 33691 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_2.dtd -rw-r--r-- root/root 36007 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_3.dtd -rw-r--r-- root/root 41304 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -rw-r--r-- root/root 660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_4.dtd -rw-r--r-- root/root 41537 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -rw-r--r-- root/root 792 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/EMBL_General.dtd -rw-r--r-- root/root 2871 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/EMBL_General.mod.dtd -rw-r--r-- root/root 807 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/GenBank_General.dtd -rw-r--r-- root/root 1743 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/GenBank_General.mod.dtd -rw-r--r-- root/root 3500 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/HomoloGene.dtd -rw-r--r-- root/root 6460 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/HomoloGene.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -rw-r--r-- root/root 14705 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -rw-r--r-- root/root 3893 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB.dtd -rw-r--r-- root/root 9382 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB.mod.dtd -rw-r--r-- root/root 3908 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -rw-r--r-- root/root 17213 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -rw-r--r-- root/root 3902 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Features.dtd -rw-r--r-- root/root 28680 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -rw-r--r-- root/root 3910 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -rw-r--r-- root/root 25075 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -rw-r--r-- root/root 665 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Access.dtd -rw-r--r-- root/root 1221 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -rw-r--r-- root/root 785 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Biblio.dtd -rw-r--r-- root/root 15918 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -rw-r--r-- root/root 925 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioSource.dtd -rw-r--r-- root/root 4641 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioTree.dtd -rw-r--r-- root/root 2444 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -rw-r--r-- root/root 3740 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Blast4.dtd -rw-r--r-- root/root 39597 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -rw-r--r-- root/root 3507 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -rw-r--r-- root/root 4281 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -rw-r--r-- root/root 692 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -rw-r--r-- root/root 6579 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -rw-r--r-- root/root 4347 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cdd.dtd -rw-r--r-- root/root 28292 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -rw-r--r-- root/root 4005 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -rw-r--r-- root/root 16758 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -rw-r--r-- root/root 410 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -rw-r--r-- root/root 21922 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -rw-r--r-- root/root 3525 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -rw-r--r-- root/root 10316 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -rw-r--r-- root/root 2358 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -rw-r--r-- root/root 659 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -rw-r--r-- root/root 11502 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -rw-r--r-- root/root 776 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Gene.dtd -rw-r--r-- root/root 2381 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_General.dtd -rw-r--r-- root/root 8215 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_General.mod.dtd -rw-r--r-- root/root 3629 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -rw-r--r-- root/root 5733 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -rw-r--r-- root/root 3757 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -rw-r--r-- root/root 23205 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -rw-r--r-- root/root 1378 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -rw-r--r-- root/root 6931 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -rw-r--r-- root/root 907 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medlars.dtd -rw-r--r-- root/root 1617 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -rw-r--r-- root/root 907 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medline.dtd -rw-r--r-- root/root 5757 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -rw-r--r-- root/root 647 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mim.dtd -rw-r--r-- root/root 8395 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -rw-r--r-- root/root 4461 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mime.dtd -rw-r--r-- root/root 7270 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -rw-r--r-- root/root 665 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -rw-r--r-- root/root 3131 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -rw-r--r-- root/root 796 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Organism.dtd -rw-r--r-- root/root 5250 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -rw-r--r-- root/root 1519 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -rw-r--r-- root/root 31800 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -rw-r--r-- root/root 1155 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -rw-r--r-- root/root 43623 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -rw-r--r-- root/root 3736 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Project.dtd -rw-r--r-- root/root 3769 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -rw-r--r-- root/root 791 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Protein.dtd -rw-r--r-- root/root 1791 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -rw-r--r-- root/root 1003 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Pub.dtd -rw-r--r-- root/root 2700 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -rw-r--r-- root/root 1021 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PubMed.dtd -rw-r--r-- root/root 1698 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -rw-r--r-- root/root 3383 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_RNA.dtd -rw-r--r-- root/root 3379 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -rw-r--r-- root/root 3495 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Remap.dtd -rw-r--r-- root/root 4064 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -rw-r--r-- root/root 781 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Rsite.dtd -rw-r--r-- root/root 1044 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -rw-r--r-- root/root 3629 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -rw-r--r-- root/root 19503 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -rw-r--r-- root/root 671 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -rw-r--r-- root/root 4231 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -rw-r--r-- root/root 3389 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -rw-r--r-- root/root 9912 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -rw-r--r-- root/root 3634 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -rw-r--r-- root/root 11475 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -rw-r--r-- root/root 3389 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -rw-r--r-- root/root 15026 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -rw-r--r-- root/root 3387 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -rw-r--r-- root/root 19204 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -rw-r--r-- root/root 3385 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -rw-r--r-- root/root 7383 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -rw-r--r-- root/root 3385 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqres.dtd -rw-r--r-- root/root 3149 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -rw-r--r-- root/root 3501 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqset.dtd -rw-r--r-- root/root 3479 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -rw-r--r-- root/root 3384 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Sequence.dtd -rw-r--r-- root/root 26293 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -rw-r--r-- root/root 3617 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Submit.dtd -rw-r--r-- root/root 4130 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -rw-r--r-- root/root 3379 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Systems.dtd -rw-r--r-- root/root 656 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TSeq.dtd -rw-r--r-- root/root 1660 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -rw-r--r-- root/root 1138 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TxInit.dtd -rw-r--r-- root/root 4625 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -rw-r--r-- root/root 3389 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Variation.dtd -rw-r--r-- root/root 27155 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -rw-r--r-- root/root 7893 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NCBI_all.dtd -rw-r--r-- root/root 625 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NSE.dtd -rw-r--r-- root/root 26853 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/NSE.mod.dtd -rw-r--r-- root/root 3470 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/OMSSA.dtd -rw-r--r-- root/root 34917 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/OMSSA.mod.dtd -rw-r--r-- root/root 787 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PDB_General.dtd -rw-r--r-- root/root 1815 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PDB_General.mod.dtd -rw-r--r-- root/root 3387 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PIR_General.dtd -rw-r--r-- root/root 2076 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PIR_General.mod.dtd -rw-r--r-- root/root 667 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PRF_General.dtd -rw-r--r-- root/root 1535 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/PRF_General.mod.dtd -rw-r--r-- root/root 3386 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/SP_General.dtd -rw-r--r-- root/root 2375 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/SP_General.mod.dtd -rw-r--r-- root/root 17329 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/XHTMLtablesetup.ent -rw-r--r-- root/root 51298 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivearticle.dtd -rw-r--r-- root/root 8304 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-classes.ent -rw-r--r-- root/root 16646 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-mixes.ent -rw-r--r-- root/root 38921 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-models.ent -rw-r--r-- root/root 6412 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/archivecustom-modules.ent -rw-r--r-- root/root 98004 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/articlemeta.ent -rw-r--r-- root/root 15090 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/backmatter.ent -rw-r--r-- root/root 2645 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_100301.dtd -rw-r--r-- root/root 2645 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_110101.dtd -rw-r--r-- root/root 2645 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_120101.dtd -rw-r--r-- root/root 2756 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_130101.dtd -rw-r--r-- root/root 2756 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_140101.dtd -rw-r--r-- root/root 2756 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/bookdoc_150101.dtd -rw-r--r-- root/root 21412 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/chars.ent -rw-r--r-- root/root 152388 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/common.ent -rw-r--r-- root/root 33182 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/default-classes.ent -rw-r--r-- root/root 19402 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/default-mixes.ent -rw-r--r-- root/root 82067 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/display.ent -rw-r--r-- root/root 1655 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eInfo_020511.dtd -rw-r--r-- root/root 2299 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eLink_090910.dtd -rw-r--r-- root/root 2447 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eLink_101123.dtd -rw-r--r-- root/root 520 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/ePost_020511.dtd -rw-r--r-- root/root 2392 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSearch_020511.dtd -rw-r--r-- root/root 736 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSpell.dtd -rw-r--r-- root/root 602 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/eSummary_041029.dtd -rw-r--r-- root/root 851 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/egquery.dtd -rw-r--r-- root/root 1715 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/einfo.dtd -rw-r--r-- root/root 466 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/elink_020122.dtd -rw-r--r-- root/root 3337 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/esearch.dtd -rw-r--r-- root/root 602 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/esummary-v1.dtd -rw-r--r-- root/root 22746 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/format.ent -rw-r--r-- root/root 9849 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/htmltable.dtd -rw-r--r-- root/root 11589 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsa.ent -rw-r--r-- root/root 9556 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsb.ent -rw-r--r-- root/root 2254 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsc.ent -rw-r--r-- root/root 7945 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsn.ent -rw-r--r-- root/root 4432 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamso.ent -rw-r--r-- root/root 14133 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isoamsr.ent -rw-r--r-- root/root 3507 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isobox.ent -rw-r--r-- root/root 5257 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isocyr1.ent -rw-r--r-- root/root 2457 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isocyr2.ent -rw-r--r-- root/root 1473 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isodia.ent -rw-r--r-- root/root 4102 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk1.ent -rw-r--r-- root/root 2389 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk2.ent -rw-r--r-- root/root 3699 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk3.ent -rw-r--r-- root/root 3591 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isogrk4.ent -rw-r--r-- root/root 5199 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isolat1.ent -rw-r--r-- root/root 8865 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isolat2.ent -rw-r--r-- root/root 4478 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomfrk.ent -rw-r--r-- root/root 2522 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomopf.ent -rw-r--r-- root/root 4557 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isomscr.ent -rw-r--r-- root/root 5816 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isonum.ent -rw-r--r-- root/root 6594 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isopub.ent -rw-r--r-- root/root 12399 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/isotech.ent -rw-r--r-- root/root 18988 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/journalmeta.ent -rw-r--r-- root/root 28360 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/link.ent -rw-r--r-- root/root 25663 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/list.ent -rw-r--r-- root/root 18334 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/math.ent -rw-r--r-- root/root 6820 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml-in-pubmed.mod lrwxrwxrwx root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd -> ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd -rw-r--r-- root/root 12255 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml3-qname1.mod -rw-r--r-- root/root 42407 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml3.dtd -rw-r--r-- root/root 10452 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathmlsetup.ent -rw-r--r-- root/root 37695 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mmlalias.ent -rw-r--r-- root/root 7776 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mmlextra.ent -rw-r--r-- root/root 21313 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/modules.ent -rw-r--r-- root/root 4465 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -rw-r--r-- root/root 12369 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -rw-r--r-- root/root 5839 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_011101.dtd -rw-r--r-- root/root 7946 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_080101.dtd -rw-r--r-- root/root 8638 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmcommon_090101.dtd -rw-r--r-- root/root 2053 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_011101.dtd -rw-r--r-- root/root 3017 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_080101.dtd -rw-r--r-- root/root 3195 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedline_090101.dtd -rw-r--r-- root/root 6760 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -rw-r--r-- root/root 5001 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -rw-r--r-- root/root 5262 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -rw-r--r-- root/root 9322 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -rw-r--r-- root/root 9618 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -rw-r--r-- root/root 9308 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -rw-r--r-- root/root 8829 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -rw-r--r-- root/root 8995 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -rw-r--r-- root/root 9033 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -rw-r--r-- root/root 9112 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -rw-r--r-- root/root 8947 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -rw-r--r-- root/root 5672 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmserials_080101.dtd -rw-r--r-- root/root 6703 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmserials_100101.dtd -rw-r--r-- root/root 3185 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -rw-r--r-- root/root 3317 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -rw-r--r-- root/root 9656 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/notat.ent -rw-r--r-- root/root 23807 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/para.ent -rw-r--r-- root/root 15750 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/phrase.ent -rw-r--r-- root/root 25142 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pmc-1.dtd -rw-r--r-- root/root 2714 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_020114.dtd -rw-r--r-- root/root 3045 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_080101.dtd -rw-r--r-- root/root 3059 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_090101.dtd -rw-r--r-- root/root 3126 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_100101.dtd -rw-r--r-- root/root 3434 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_100301.dtd -rw-r--r-- root/root 3434 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_110101.dtd -rw-r--r-- root/root 3434 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_120101.dtd -rw-r--r-- root/root 3434 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_130101.dtd -rw-r--r-- root/root 3445 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_130501.dtd -rw-r--r-- root/root 3445 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_140101.dtd -rw-r--r-- root/root 3445 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_150101.dtd -rw-r--r-- root/root 13062 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_180101.dtd -rw-r--r-- root/root 13869 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_180601.dtd -rw-r--r-- root/root 14576 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/pubmed_190101.dtd -rw-r--r-- root/root 40015 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/references.ent -rw-r--r-- root/root 13173 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/section.ent -rw-r--r-- root/root 4003 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/taxon.dtd -rw-r--r-- root/root 13595 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/DTDs/xmlspecchars.ent -rw-r--r-- root/root 40428 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/Parser.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Entrez/XSDs/ -rw-r--r-- root/root 3536 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/XSDs/IPGReportSet.xsd -rw-r--r-- root/root 26288 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Entrez/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/ExPASy/ -rw-r--r-- root/root 4455 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/Enzyme.py -rw-r--r-- root/root 5015 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/Prodoc.py -rw-r--r-- root/root 11716 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/Prosite.py -rw-r--r-- root/root 4890 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/ScanProsite.py -rw-r--r-- root/root 4180 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/__init__.py -rw-r--r-- root/root 5598 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/ExPASy/cellosaurus.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/FSSP/ -rw-r--r-- root/root 4013 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/FSSP/FSSPTools.py -rw-r--r-- root/root 11230 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/FSSP/__init__.py -rw-r--r-- root/root 1395 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/FSSP/fssp_rec.py -rw-r--r-- root/root 24615 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/File.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/GenBank/ -rw-r--r-- root/root 23276 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/GenBank/Record.py -rw-r--r-- root/root 86137 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/GenBank/Scanner.py -rw-r--r-- root/root 64707 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/GenBank/__init__.py -rw-r--r-- root/root 2271 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/GenBank/utils.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Geo/ -rw-r--r-- root/root 3067 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Geo/Record.py -rw-r--r-- root/root 2176 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Geo/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Graphics/ -rw-r--r-- root/root 31442 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/BasicChromosome.py -rw-r--r-- root/root 7365 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/ColorSpiral.py -rw-r--r-- root/root 6462 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/Comparative.py -rw-r--r-- root/root 6860 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/DisplayRepresentation.py -rw-r--r-- root/root 9357 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/Distribution.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/ -rw-r--r-- root/root 18548 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -rw-r--r-- root/root 68560 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -rw-r--r-- root/root 9678 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py -rw-r--r-- root/root 3309 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py -rw-r--r-- root/root 15639 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py -rw-r--r-- root/root 8059 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py -rw-r--r-- root/root 7812 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py -rw-r--r-- root/root 6944 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py -rw-r--r-- root/root 5650 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py -rw-r--r-- root/root 63224 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -rw-r--r-- root/root 11679 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py -rw-r--r-- root/root 1172 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py -rw-r--r-- root/root 17636 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/KGML_vis.py -rw-r--r-- root/root 3234 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Graphics/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/HMM/ -rw-r--r-- root/root 12516 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/HMM/DynamicProgramming.py -rw-r--r-- root/root 26602 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/HMM/MarkovModel.py -rw-r--r-- root/root 16554 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/HMM/Trainer.py -rw-r--r-- root/root 2176 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/HMM/Utilities.py -rw-r--r-- root/root 283 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/HMM/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/Compound/ -rw-r--r-- root/root 5319 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/Compound/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/Enzyme/ -rw-r--r-- root/root 10930 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/Enzyme/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/Gene/ -rw-r--r-- root/root 4216 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/Gene/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/ -rw-r--r-- root/root 6197 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/KGML_parser.py -rw-r--r-- root/root 27679 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/KGML_pathway.py -rw-r--r-- root/root 516 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/KGML/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/KEGG/Map/ -rw-r--r-- root/root 1642 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/Map/__init__.py -rw-r--r-- root/root 10968 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/REST.py -rw-r--r-- root/root 3027 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/KEGG/__init__.py -rw-r--r-- root/root 4297 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/LogisticRegression.py -rw-r--r-- root/root 23661 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/MarkovModel.py -rw-r--r-- root/root 10888 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/MaxEntropy.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Medline/ -rw-r--r-- root/root 5913 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Medline/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/NMR/ -rw-r--r-- root/root 3353 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/NMR/NOEtools.py -rw-r--r-- root/root 332 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/NMR/__init__.py -rw-r--r-- root/root 9275 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/NMR/xpktools.py -rw-r--r-- root/root 7962 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/NaiveBayes.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Nexus/ -rw-r--r-- root/root 84638 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/Nexus.py -rw-r--r-- root/root 5745 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/Nodes.py -rw-r--r-- root/root 4006 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/StandardData.py -rw-r--r-- root/root 40150 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/Trees.py -rw-r--r-- root/root 388 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/__init__.py -rw-r--r-- root/root 3736 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Nexus/cnexus.c -rw-r--r-- root/root 14688 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-39-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/ -rw-r--r-- root/root 4083 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/AbstractPropertyMap.py -rw-r--r-- root/root 16294 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Atom.py -rw-r--r-- root/root 6663 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Chain.py -rw-r--r-- root/root 19342 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/DSSP.py -rw-r--r-- root/root 2321 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Dice.py -rw-r--r-- root/root 13828 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Entity.py -rw-r--r-- root/root 9626 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/FragmentMapper.py -rw-r--r-- root/root 11313 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/HSExposure.py -rw-r--r-- root/root 4883 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/MMCIF2Dict.py -rw-r--r-- root/root 21234 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/MMCIFParser.py -rw-r--r-- root/root 2205 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Model.py -rw-r--r-- root/root 7182 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/NACCESS.py -rw-r--r-- root/root 4423 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/NeighborSearch.py -rw-r--r-- root/root 762 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PDBExceptions.py -rw-r--r-- root/root 13290 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PDBIO.py -rw-r--r-- root/root 21840 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PDBList.py -rw-r--r-- root/root 17442 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PDBParser.py -rw-r--r-- root/root 15527 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PICIO.py -rw-r--r-- root/root 3030 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/PSEA.py -rw-r--r-- root/root 13987 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Polypeptide.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/ -rw-r--r-- root/root 5359 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py -rw-r--r-- root/root 9125 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.c -rw-r--r-- root/root 18784 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 5378 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Residue.py -rw-r--r-- root/root 22961 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/ResidueDepth.py -rw-r--r-- root/root 31907 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/SCADIO.py -rw-r--r-- root/root 2528 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Selection.py -rw-r--r-- root/root 2079 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Structure.py -rw-r--r-- root/root 3182 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/StructureAlignment.py -rw-r--r-- root/root 11708 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py -rw-r--r-- root/root 1947 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/Superimposer.py -rw-r--r-- root/root 2202 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/__init__.py -rw-r--r-- root/root 15603 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/ic_data.py -rw-r--r-- root/root 13034 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/ic_rebuild.py -rw-r--r-- root/root 130020 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/internal_coords.py -rw-r--r-- root/root 42796 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/kdtrees.c -rw-r--r-- root/root 28912 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 15410 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/mmcifio.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/ -rw-r--r-- root/root 8949 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/DefaultParser.py -rw-r--r-- root/root 1546 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/__init__.py -rw-r--r-- root/root 10167 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/mmtf/mmtfio.py -rw-r--r-- root/root 11664 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/parse_pdb_header.py -rw-r--r-- root/root 18339 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PDB/vectors.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Pathway/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/ -rw-r--r-- root/root 5869 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/Graph.py -rw-r--r-- root/root 6783 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/MultiGraph.py -rw-r--r-- root/root 575 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Pathway/Rep/__init__.py -rw-r--r-- root/root 10763 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Pathway/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Phylo/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/ -rw-r--r-- root/root 27336 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Fasttree.py -rw-r--r-- root/root 10778 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Phyml.py -rw-r--r-- root/root 18792 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/_Raxml.py -rw-r--r-- root/root 522 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Applications/__init__.py -rw-r--r-- root/root 44993 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/BaseTree.py -rw-r--r-- root/root 1662 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/CDAO.py -rw-r--r-- root/root 16106 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py -rw-r--r-- root/root 23545 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Consensus.py -rw-r--r-- root/root 1403 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/NeXML.py -rw-r--r-- root/root 11267 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/NeXMLIO.py -rw-r--r-- root/root 1298 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/Newick.py -rw-r--r-- root/root 12489 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/NewickIO.py -rw-r--r-- root/root 2652 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/NexusIO.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/ -rw-r--r-- root/root 325 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/__init__.py -rw-r--r-- root/root 5151 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_paml.py -rw-r--r-- root/root 11409 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_baseml.py -rw-r--r-- root/root 21281 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_codeml.py -rw-r--r-- root/root 6820 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/_parse_yn00.py -rw-r--r-- root/root 8320 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/baseml.py -rw-r--r-- root/root 3727 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/chi2.py -rw-r--r-- root/root 8878 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/codeml.py -rw-r--r-- root/root 5743 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PAML/yn00.py -rw-r--r-- root/root 50771 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PhyloXML.py -rw-r--r-- root/root 32688 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/PhyloXMLIO.py -rw-r--r-- root/root 43060 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/TreeConstruction.py -rw-r--r-- root/root 528 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/__init__.py -rw-r--r-- root/root 109270 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/_cdao_owl.py -rw-r--r-- root/root 2595 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/_io.py -rw-r--r-- root/root 23477 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Phylo/_utils.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PopGen/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/ -rw-r--r-- root/root 34440 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/Controller.py -rw-r--r-- root/root 7719 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/EasyController.py -rw-r--r-- root/root 11790 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/FileParser.py -rw-r--r-- root/root 3869 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py -rw-r--r-- root/root 7481 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/GenePop/__init__.py -rw-r--r-- root/root 359 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/PopGen/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Restriction/ -rw-r--r-- root/root 16234 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Restriction/PrintFormat.py -rw-r--r-- root/root 85802 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Restriction/Restriction.py -rw-r--r-- root/root 439594 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Restriction/Restriction_Dictionary.py -rw-r--r-- root/root 7856 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Restriction/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SCOP/ -rw-r--r-- root/root 3924 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Cla.py -rw-r--r-- root/root 3006 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Des.py -rw-r--r-- root/root 2467 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Dom.py -rw-r--r-- root/root 2966 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Hie.py -rw-r--r-- root/root 10304 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Raf.py -rw-r--r-- root/root 3063 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/Residues.py -rw-r--r-- root/root 32782 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SCOP/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SVDSuperimposer/ -rw-r--r-- root/root 6210 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SVDSuperimposer/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/ -rw-r--r-- root/root 23896 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/__init__.py -rw-r--r-- root/root 33766 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py -rw-r--r-- root/root 5610 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_text.py -rw-r--r-- root/root 37200 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py -rw-r--r-- root/root 31231 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/BlatIO.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/ -rw-r--r-- root/root 12965 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py -rw-r--r-- root/root 20012 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/_base.py -rw-r--r-- root/root 4089 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -rw-r--r-- root/root 20436 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py -rw-r--r-- root/root 8244 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -rw-r--r-- root/root 25944 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/FastaIO.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/ -rw-r--r-- root/root 639 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py -rw-r--r-- root/root 9309 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/ -rw-r--r-- root/root 20309 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/__init__.py -rw-r--r-- root/root 1482 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/_base.py -rw-r--r-- root/root 12839 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py -rw-r--r-- root/root 13956 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -rw-r--r-- root/root 12818 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py -rw-r--r-- root/root 18733 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/ -rw-r--r-- root/root 5155 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py -rw-r--r-- root/root 7460 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py -rw-r--r-- root/root 29010 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/__init__.py -rw-r--r-- root/root 1213 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_index.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/ -rw-r--r-- root/root 75074 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py -rw-r--r-- root/root 12123 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py -rw-r--r-- root/root 313 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_legacy/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/ -rw-r--r-- root/root 2464 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/__init__.py -rw-r--r-- root/root 2650 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/_base.py -rw-r--r-- root/root 17381 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/hit.py -rw-r--r-- root/root 48199 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/hsp.py -rw-r--r-- root/root 30459 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_model/query.py -rw-r--r-- root/root 5597 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SearchIO/_utils.py -rw-r--r-- root/root 89541 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Seq.py -rw-r--r-- root/root 75972 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqFeature.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SeqIO/ -rw-r--r-- root/root 26099 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/AbiIO.py -rw-r--r-- root/root 4093 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/AceIO.py -rw-r--r-- root/root 14957 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/FastaIO.py -rw-r--r-- root/root 8046 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/GckIO.py -rw-r--r-- root/root 4433 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/IgIO.py -rw-r--r-- root/root 56322 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/InsdcIO.py -rw-r--r-- root/root 14565 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/Interfaces.py -rw-r--r-- root/root 5776 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/NibIO.py -rw-r--r-- root/root 19998 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/PdbIO.py -rw-r--r-- root/root 6076 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/PhdIO.py -rw-r--r-- root/root 10246 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/PirIO.py -rw-r--r-- root/root 90287 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/QualityIO.py -rw-r--r-- root/root 27527 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/SeqXmlIO.py -rw-r--r-- root/root 55734 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/SffIO.py -rw-r--r-- root/root 9292 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/SnapGeneIO.py -rw-r--r-- root/root 6003 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/SwissIO.py -rw-r--r-- root/root 4951 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/TabIO.py -rw-r--r-- root/root 25530 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/UniprotIO.py -rw-r--r-- root/root 12469 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/XdnaIO.py -rw-r--r-- root/root 43571 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py -rw-r--r-- root/root 27371 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqIO/_index.py -rw-r--r-- root/root 54399 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqRecord.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ -rw-r--r-- root/root 3675 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CheckSum.py -rw-r--r-- root/root 6789 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CodonUsage.py -rw-r--r-- root/root 1380 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/CodonUsageIndices.py -rw-r--r-- root/root 6477 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/IsoelectricPoint.py -rw-r--r-- root/root 45289 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/MeltingTemp.py -rw-r--r-- root/root 12658 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ProtParam.py -rw-r--r-- root/root 8184 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/ProtParamData.py -rw-r--r-- root/root 15035 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/__init__.py -rw-r--r-- root/root 6027 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SeqUtils/lcc.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Sequencing/ -rw-r--r-- root/root 20641 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Ace.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/ -rw-r--r-- root/root 8518 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_Novoalign.py -rw-r--r-- root/root 1924 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/__init__.py -rw-r--r-- root/root 28133 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_bwa.py -rw-r--r-- root/root 36534 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Applications/_samtools.py -rw-r--r-- root/root 5530 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/Phd.py -rw-r--r-- root/root 412 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Sequencing/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Statistics/ -rw-r--r-- root/root 504 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Statistics/__init__.py -rw-r--r-- root/root 3511 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Statistics/lowess.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SubsMat/ -rw-r--r-- root/root 2821 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SubsMat/FreqTable.py -rw-r--r-- root/root 173812 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SubsMat/MatrixInfo.py -rw-r--r-- root/root 23073 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SubsMat/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/SwissProt/ -rw-r--r-- root/root 3490 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SwissProt/KeyWList.py -rw-r--r-- root/root 33077 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/SwissProt/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/TogoWS/ -rw-r--r-- root/root 13951 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/TogoWS/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/UniGene/ -rw-r--r-- root/root 12811 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/UniGene/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/UniProt/ -rw-r--r-- root/root 13930 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/UniProt/GOA.py -rw-r--r-- root/root 722 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/UniProt/__init__.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/Wise/ -rw-r--r-- root/root 4701 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Wise/__init__.py -rw-r--r-- root/root 4819 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Wise/dnal.py -rw-r--r-- root/root 4608 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/Wise/psw.py -rw-r--r-- root/root 4721 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/__init__.py -rw-r--r-- root/root 2095 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/_utils.py -rw-r--r-- root/root 37551 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/bgzf.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/codonalign/ -rw-r--r-- root/root 29974 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/codonalign/__init__.py -rw-r--r-- root/root 3281 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/codonalign/chisq.py -rw-r--r-- root/root 18039 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/codonalign/codonalignment.py -rw-r--r-- root/root 47918 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/codonalign/codonseq.py -rw-r--r-- root/root 18944 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 16043 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/cpairwise2module.c -rw-r--r-- root/root 4285 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/kNN.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/motifs/ -rw-r--r-- root/root 20644 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/__init__.py -rw-r--r-- root/root 5690 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/_pwm.c -rw-r--r-- root/root 14968 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 2097 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/alignace.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/motifs/applications/ -rw-r--r-- root/root 424 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/applications/__init__.py -rw-r--r-- root/root 10382 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/applications/_xxmotif.py -rw-r--r-- root/root 2562 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/clusterbuster.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/ -rw-r--r-- root/root 11315 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/__init__.py -rw-r--r-- root/root 27734 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/jaspar/db.py -rw-r--r-- root/root 4828 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/mast.py -rw-r--r-- root/root 20031 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/matrix.py -rw-r--r-- root/root 6706 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/meme.py -rw-r--r-- root/root 5717 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/minimal.py -rw-r--r-- root/root 16633 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/pfm.py -rw-r--r-- root/root 4534 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/thresholds.py -rw-r--r-- root/root 11905 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/transfac.py -rw-r--r-- root/root 3843 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/motifs/xms.py -rw-r--r-- root/root 52635 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/pairwise2.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/Bio/phenotype/ -rw-r--r-- root/root 8318 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/phenotype/__init__.py -rw-r--r-- root/root 37678 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/phenotype/phen_micro.py -rw-r--r-- root/root 4062 2020-09-03 23:14 ./usr/lib/python3/dist-packages/Bio/phenotype/pm_fitting.py drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/biopython-1.78.egg-info/ -rw-r--r-- root/root 14977 2021-08-30 15:59 ./usr/lib/python3/dist-packages/biopython-1.78.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-08-30 15:59 ./usr/lib/python3/dist-packages/biopython-1.78.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2021-08-30 15:59 ./usr/lib/python3/dist-packages/biopython-1.78.egg-info/requires.txt -rw-r--r-- root/root 11 2021-08-30 15:59 ./usr/lib/python3/dist-packages/biopython-1.78.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/doc/python3-biopython/ -rw-r--r-- root/root 4939 2020-09-03 23:14 ./usr/share/doc/python3-biopython/CONTRIB.rst.gz -rw-r--r-- root/root 1970 2020-09-03 23:14 ./usr/share/doc/python3-biopython/CONTRIBUTING.rst.gz -rw-r--r-- root/root 9308 2020-09-03 23:14 ./usr/share/doc/python3-biopython/DEPRECATED.rst.gz -rw-r--r-- root/root 34802 2020-09-03 23:14 ./usr/share/doc/python3-biopython/NEWS.rst.gz -rw-r--r-- root/root 273 2021-08-22 17:54 ./usr/share/doc/python3-biopython/README.Debian -rw-r--r-- root/root 1621 2021-08-30 15:59 ./usr/share/doc/python3-biopython/changelog.Debian.gz -rw-r--r-- root/root 2055 2021-08-22 19:52 ./usr/share/doc/python3-biopython/copyright drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-08-30 15:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 278 2021-08-22 17:54 ./usr/share/lintian/overrides/python3-biopython +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 504 Distribution: impish-proposed Host Architecture: amd64 Install-Time: 67 Job: python-biopython_1.78+dfsg-5ubuntu1.dsc Machine Architecture: amd64 Package: python-biopython Package-Time: 572 Source-Version: 1.78+dfsg-5ubuntu1 Space: n/a Status: successful Version: 1.78+dfsg-5ubuntu1 -------------------------------------------------------------------------------- Finished at 2021-08-30T16:11:55Z Build needed 00:09:32, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22026614 Scanning for processes to kill in build PACKAGEBUILD-22026614