https://launchpad.net/ubuntu/+source/python-biopython/1.76+dfsg-1build1/+build/18723467 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-025 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Feb 07:51:02 ntpdate[1880]: adjust time server 10.211.37.1 offset -0.000669 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18723467 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18723467 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18723467 Starting target for build PACKAGEBUILD-18723467 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18723467 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18723467 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18723467 Updating target for build PACKAGEBUILD-18723467 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [944 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8370 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5155 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [121 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [56.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [499 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [332 kB] Fetched 16.7 MB in 8s (2089 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base procps sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 108 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 57.5 MB of archives. After this operation, 38.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf linux-libc-dev armhf 5.4.0-14.17 [1115 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf gcc-10-base armhf 10-20200211-1ubuntu1 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf libgcc-s1 armhf 10-20200211-1ubuntu1 [36.5 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf libgcc1 armhf 1:10-20200211-1ubuntu1 [36.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main armhf bsdutils armhf 1:2.34-0.1ubuntu7 [58.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf findutils armhf 4.7.0-1ubuntu1 [307 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf grep armhf 3.4-1 [141 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf login armhf 1:4.8.1-1ubuntu1 [217 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libblkid1 armhf 2.34-0.1ubuntu7 [124 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libuuid1 armhf 2.34-0.1ubuntu7 [19.7 kB] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libfdisk1 armhf 2.34-0.1ubuntu7 [163 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libselinux1 armhf 3.0-1build1 [60.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libmount1 armhf 2.34-0.1ubuntu7 [135 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main 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http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-2.1ubuntu1 [19.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libgpg-error0 armhf 1.37-1 [50.0 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libstdc++6 armhf 10-20200211-1ubuntu1 [440 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244.2-1ubuntu1 [9368 B] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu2 [29.1 kB] Get:49 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1build1 [9688 B] Get:51 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libaudit1 armhf 1:2.8.5-2ubuntu6 [35.8 kB] Get:52 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcap2 armhf 1:2.32-1 [14.0 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244.2-1ubuntu1 [69.6 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu1 [118 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-7 [25.6 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libssl1.1 armhf 1.1.1d-2ubuntu3 [1080 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-3ubuntu1 [163 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:59 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgmp10 armhf 2:6.2.0+dfsg-3 [192 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libffi7 armhf 3.3-3 [16.5 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.20-1build1 [167 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.16.0-2 [33.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2ubuntu2 [733 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libip4tc2 armhf 1.8.4-3ubuntu1 [16.8 kB] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libkmod2 armhf 27-1ubuntu1 [38.3 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:68 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libseccomp2 armhf 2.4.2-2ubuntu3 [32.2 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main armhf mount armhf 2.34-0.1ubuntu7 [108 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244.2-1ubuntu1 [3535 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244.2-1ubuntu1 [241 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-3 [207 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.10 [774 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.10 [1237 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf logsave armhf 1.45.5-2ubuntu1 [9568 B] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libext2fs2 armhf 1.45.5-2ubuntu1 [170 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf e2fsprogs armhf 1.45.5-2ubuntu1 [508 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage-common all 3.0-1build1 [9876 B] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libsemanage1 armhf 3.0-1build1 [74.1 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main armhf passwd armhf 1:4.8.1-1ubuntu1 [749 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf libgomp1 armhf 10-20200211-1ubuntu1 [86.5 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf libatomic1 armhf 10-20200211-1ubuntu1 [7244 B] Get:90 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libasan5 armhf 9.2.1-29ubuntu1 [387 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libubsan1 armhf 10-20200211-1ubuntu1 [121 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main armhf g++-9 armhf 9.2.1-29ubuntu1 [6683 kB] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9 armhf 9.2.1-29ubuntu1 [6542 kB] Get:94 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++-9-dev armhf 9.2.1-29ubuntu1 [1778 kB] Get:95 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-9-dev armhf 9.2.1-29ubuntu1 [687 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22.1-1 [460 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libcc1-0 armhf 10-20200211-1ubuntu1 [34.3 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.34-1ubuntu1 [2093 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.34-1ubuntu1 [319 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf 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http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.31.1-1ubuntu1 [467 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf openssl armhf 1.1.1d-2ubuntu3 [595 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libpng16-16 armhf 1.6.37-2 [162 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf libassuan0 armhf 2.5.3-7ubuntu2 [29.1 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.5 MB in 4s (16.3 MB/s) (Reading database ... 12487 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_armhf.deb ... Unpacking libc6-dev:armhf (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_armhf.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-14.17_armhf.deb ... Unpacking linux-libc-dev:armhf (5.4.0-14.17) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_armhf.deb ... Unpacking gcc-10-base:armhf (10-20200211-1ubuntu1) ... Setting up gcc-10-base:armhf (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-s1:armhf. (Reading database ... 12497 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1ubuntu1_armhf.deb ... Unpacking libgcc-s1:armhf (10-20200211-1ubuntu1) ... Replacing files in old package libgcc1:armhf (1:9.2.1-9ubuntu2) ... 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Setting up libkmod2:armhf (27-1ubuntu1) ... Setting up gcc-9-base:armhf (9.2.1-29ubuntu1) ... Setting up libctf0:armhf (2.34-1ubuntu1) ... Setting up gpg-agent (2.2.17-3ubuntu1) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up libasan5:armhf (9.2.1-29ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up procps (2:3.3.16-1ubuntu1) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18723467 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18723467 --arch=armhf --dist=focal-proposed --nolog python-biopython_1.76+dfsg-1build1.dsc Initiating build PACKAGEBUILD-18723467 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-174-generic #204-Ubuntu SMP Wed Jan 29 06:42:38 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-025.buildd +==============================================================================+ | python-biopython 1.76+dfsg-1build1 (armhf) 21 Feb 2020 07:52 | +==============================================================================+ Package: python-biopython Version: 1.76+dfsg-1build1 Source Version: 1.76+dfsg-1build1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/python-biopython-Xzqxgq/python-biopython-1.76+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/python-biopython-Xzqxgq' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18723467/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-biopython_1.76+dfsg-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-5wzX3c/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-5wzX3c/apt_archive ./ InRelease Get:2 copy:/<>/resolver-5wzX3c/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-5wzX3c/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-5wzX3c/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-5wzX3c/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (57.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-5wzX3c/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (49.7 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14419 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise, python3-pygments Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise, python3-pygments dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/<>/resolver-m14hct/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'. Ign:1 copy:/<>/resolver-m14hct/apt_archive ./ InRelease Get:2 copy:/<>/resolver-m14hct/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-m14hct/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-m14hct/apt_archive ./ Sources [456 B] Get:5 copy:/<>/resolver-m14hct/apt_archive ./ Packages [761 B] Fetched 3336 B in 0s (38.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install python-biopython build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils bwa clustalo clustalw debhelper dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base gsfonts hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-program-options1.71.0 libboost-thread1.71.0 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcroco3 libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhpdf-2.3.0 libhts3 libhx509-5-heimdal libice6 libicu65 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocaml-base-nox phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.8 python3.8-dev python3.8-minimal samtools t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation clustalx seaview dh-make emboss-doc emboss-test embassy bison flex-doc fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff hevea-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libgd-tools krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser phylip-doc libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum probcons-extra python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip python3-tornado texlive-extra-utils ttf-staypuft default-mysql-server | virtual-mysql-server python3-mysqldb-dbg python-networkx-doc python3-gdal python3-pygraphviz | python3-pydot gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pil-doc python3-pil-dbg python-psycopg2-doc python-pygments-doc python-pyparsing-doc python-rdflib-doc python3-renderpm-dbg pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc python3.8-venv python3.8-doc binfmt-support boxshade t-coffee-examples perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex wise-doc Recommended packages: primer3 libfl-dev curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev blast2 libwww-perl lynx ruby libmail-sendmail-perl python3-tk python3-yaml python3-olefile python3-sparqlwrapper python3-html5lib cwltool amap-align dialign-tx fsa kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align lmodern dvisvgm tex-gyre tipa texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils bwa clustalo clustalw debhelper dh-autoreconf dh-python dh-strip-nondeterminism dialign dssp dwz emboss emboss-data emboss-lib fasttree file flex fontconfig-config fonts-dejavu-core fonts-lmodern fonts-lyx fonts-urw-base35 gettext gettext-base ghostscript groff-base gsfonts hevea intltool-debian libapache-pom-java libarchive-zip-perl libargtable2-0 libasn1-8-heimdal libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-program-options1.71.0 libboost-thread1.71.0 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcroco3 libcups2 libcurl3-gnutls libdbus-1-3 libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgd3 libgfortran5 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhpdf-2.3.0 libhts3 libhx509-5-heimdal libice6 libicu65 libidn11 libijs-0.35 libimagequant0 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 libldap-common liblmdb0 libmagic-mgc libmagic1 libmbedcrypto3 libmbedtls12 libmbedx509-0 libmpdec2 libmysqlclient21 libnetpbm10 libnghttp2-14 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libpq5 libpsl5 libptexenc1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data netpbm ocaml-base-nox phylip po-debconf poppler-data prank preview-latex-style probcons python-matplotlib-data python3 python3-all python3-all-dev python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-isodate python3-kiwisolver python3-lib2to3 python3-linecache2 python3-matplotlib python3-minimal python3-mysqldb python3-networkx python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pygments python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-traceback2 python3-unittest2 python3.8 python3.8-dev python3.8-minimal samtools sbuild-build-depends-python-biopython-dummy t-coffee t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ttf-bitstream-vera ucf wise wise-data x11-common xdg-utils zlib1g-dev 0 upgraded, 230 newly installed, 0 to remove and 0 not upgraded. Need to get 241 MB of archives. After this operation, 1148 MB of additional disk space will be used. Get:1 copy:/<>/resolver-m14hct/apt_archive ./ sbuild-build-depends-python-biopython-dummy 0.invalid.0 [1088 B] Get:2 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.8-minimal armhf 3.8.2~rc2-1 [697 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1 armhf 2.2.9-1 [53.2 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3.8-minimal armhf 3.8.2~rc2-1 [1581 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf python3-minimal armhf 3.8.0-3ubuntu1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libmpdec2 armhf 2.4.2-2 [66.4 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.8-stdlib armhf 3.8.2~rc2-1 [1595 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3.8 armhf 3.8.2~rc2-1 [363 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-stdlib armhf 3.8.0-3ubuntu1 [6872 B] Get:11 http://ftpmaster.internal/ubuntu focal/main armhf python3 armhf 3.8.0-3ubuntu1 [47.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main armhf groff-base armhf 1.22.4-4 [777 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main armhf man-db armhf 2.9.0-2 [1079 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main armhf m4 armhf 1.4.18-4 [187 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main armhf flex armhf 2.6.4-6.2 [298 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main armhf poppler-data all 0.4.9-2 [1475 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf ucf all 3.0038+nmu1 [51.6 kB] Get:23 http://ftpmaster.internal/ubuntu focal/universe armhf tex-common all 6.13 [32.7 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf file armhf 1:5.38-4 [22.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf libdbus-1-3 armhf 1.12.16-2ubuntu2 [156 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libglib2.0-0 armhf 2.63.5-2 [1122 kB] Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libicu65 armhf 65.1-1ubuntu1 [8208 kB] Get:31 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libxml2 armhf 2.9.10+dfsg-1ubuntu2 [546 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf python3-pkg-resources all 44.0.0-1 [100 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf python3-six all 1.14.0-2 [12.1 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf gettext-base armhf 0.19.8.1-10 [46.2 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libkeyutils1 armhf 1.6-6ubuntu1 [9172 B] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-3 armhf 1.17-6ubuntu4 [287 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu4 [101 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libpsl5 armhf 0.20.2-2 [48.7 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libxau6 armhf 1:1.0.9-0ubuntu1 [6612 B] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu1 [9160 B] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libxcb1 armhf 1.13.1-5build1 [41.3 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libx11-data all 2:1.6.8-1 [113 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libx11-6 armhf 2:1.6.8-1 [517 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf libxext6 armhf 2:1.3.4-0ubuntu1 [24.2 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf autoconf all 2.69-11.1 [321 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf autopoint all 0.19.8.1-10 [412 kB] Get:51 http://ftpmaster.internal/ubuntu focal/universe armhf bwa armhf 0.7.17-4 [191 kB] Get:52 http://ftpmaster.internal/ubuntu focal/universe armhf libargtable2-0 armhf 13-1 [12.0 kB] Get:53 http://ftpmaster.internal/ubuntu focal/universe armhf clustalo armhf 1.2.4-4 [229 kB] Get:54 http://ftpmaster.internal/ubuntu focal/universe armhf clustalw armhf 2.1+lgpl-6 [242 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf libtool all 2.4.6-13 [161 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf dh-autoreconf all 19 [16.1 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libarchive-zip-perl all 1.67-1 [90.4 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf dwz armhf 0.13-5 [153 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf gettext armhf 0.19.8.1-10 [836 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf po-debconf all 1.0.21 [233 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf debhelper all 12.9ubuntu1 [869 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf python3-lib2to3 all 3.8.0-1 [75.6 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf python3-distutils all 3.8.0-1 [142 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf dh-python all 4.20191017ubuntu5 [88.0 kB] Get:71 http://ftpmaster.internal/ubuntu focal/universe armhf dialign armhf 2.2.1-10 [139 kB] Get:72 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-program-options1.71.0 armhf 1.71.0-6ubuntu3 [319 kB] Get:73 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libboost-thread1.71.0 armhf 1.71.0-6ubuntu3 [239 kB] Get:74 http://ftpmaster.internal/ubuntu focal/universe armhf dssp armhf 3.0.0-3build1 [229 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf libfreetype6 armhf 2.10.1-2 [283 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:77 http://ftpmaster.internal/ubuntu focal/universe armhf ttf-bitstream-vera all 1.10-8 [352 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libfontconfig1 armhf 2.13.1-2ubuntu2 [95.8 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu1 [90.4 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libtiff5 armhf 4.1.0+git191117-2 [143 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libxpm4 armhf 1:3.5.12-1 [29.0 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libgd3 armhf 2.2.5-5.2 [98.7 kB] Get:87 http://ftpmaster.internal/ubuntu focal/universe armhf libhpdf-2.3.0 armhf 2.3.0+dfsg-1 [327 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main armhf mysql-common all 5.8+1.0.5ubuntu2 [7496 B] Get:89 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libmysqlclient21 armhf 8.0.19-0ubuntu4 [1178 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libroken18-heimdal armhf 7.7.0+dfsg-1 [34.7 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-1 [140 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-1 [24.4 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-1 [78.5 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf libwind0-heimdal armhf 7.7.0+dfsg-1 [46.9 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-1 [88.7 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-1 [170 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-1 [13.2 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-1 [80.0 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main armhf libldap-common all 2.4.49+dfsg-1ubuntu1 [17.2 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-1ubuntu1 [133 kB] Get:103 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpq5 armhf 12.2-1 [97.5 kB] Get:104 http://ftpmaster.internal/ubuntu focal/universe armhf emboss-lib armhf 6.6.0+dfsg-7ubuntu2 [2361 kB] Get:105 http://ftpmaster.internal/ubuntu focal/universe armhf emboss-data all 6.6.0+dfsg-7ubuntu2 [61.0 MB] Get:106 http://ftpmaster.internal/ubuntu focal/universe armhf emboss armhf 6.6.0+dfsg-7ubuntu2 [943 kB] Get:107 http://ftpmaster.internal/ubuntu focal/universe armhf fonts-lmodern all 2.004.5-6 [4532 kB] Get:108 http://ftpmaster.internal/ubuntu focal/universe armhf fonts-lyx all 2.3.4.2-2 [154 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main armhf fonts-urw-base35 all 20170801.1-3 [6333 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main armhf libgs9-common all 9.50~dfsg-5ubuntu2 [681 kB] Get:111 http://ftpmaster.internal/ubuntu focal/main armhf libavahi-common-data armhf 0.7-4ubuntu6 [21.3 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main armhf libavahi-common3 armhf 0.7-4ubuntu6 [18.3 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main armhf libavahi-client3 armhf 0.7-4ubuntu6 [22.0 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main armhf libcups2 armhf 2.3.1-7 [200 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main armhf libidn11 armhf 1.33-2.2ubuntu2 [43.1 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main armhf libijs-0.35 armhf 0.35-15 [14.0 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main armhf libjbig2dec0 armhf 0.17-1 [51.8 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main armhf liblcms2-2 armhf 2.9-4 [115 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main armhf libopenjp2-7 armhf 2.3.1-1ubuntu4 [126 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main armhf libpaper1 armhf 1.1.28 [12.1 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main armhf libgs9 armhf 9.50~dfsg-5ubuntu2 [1880 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main armhf ghostscript armhf 9.50~dfsg-5ubuntu2 [51.2 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main armhf gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.4 [3120 kB] Get:124 http://ftpmaster.internal/ubuntu focal/universe armhf libnetpbm10 armhf 2:10.0-15.3build1 [47.5 kB] Get:125 http://ftpmaster.internal/ubuntu focal/universe armhf netpbm armhf 2:10.0-15.3build1 [891 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main armhf libpaper-utils armhf 1.1.28 [7960 B] Get:127 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libkpathsea6 armhf 2019.20190605.51237-3build1 [48.8 kB] Get:128 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libptexenc1 armhf 2019.20190605.51237-3build1 [32.8 kB] Get:129 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsynctex2 armhf 2019.20190605.51237-3build1 [42.9 kB] Get:130 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libtexlua53 armhf 2019.20190605.51237-3build1 [81.4 kB] Get:131 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libtexluajit2 armhf 2019.20190605.51237-3build1 [181 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main armhf t1utils armhf 1.41-3 [48.2 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main armhf libpixman-1-0 armhf 0.38.4-0ubuntu1 [159 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main armhf libxcb-render0 armhf 1.13.1-5build1 [14.2 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main armhf libxcb-shm0 armhf 1.13.1-5build1 [5540 B] Get:136 http://ftpmaster.internal/ubuntu focal/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:137 http://ftpmaster.internal/ubuntu focal/main armhf libcairo2 armhf 1.16.0-4ubuntu1 [503 kB] Get:138 http://ftpmaster.internal/ubuntu focal/main armhf libgraphite2-3 armhf 1.3.13-11 [62.7 kB] Get:139 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libharfbuzz0b armhf 2.6.4-1ubuntu2 [347 kB] Get:140 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libharfbuzz-icu0 armhf 2.6.4-1ubuntu2 [5024 B] Get:141 http://ftpmaster.internal/ubuntu focal/universe armhf libteckit0 armhf 2.5.8+ds2-5ubuntu1 [245 kB] Get:142 http://ftpmaster.internal/ubuntu focal/main armhf x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:143 http://ftpmaster.internal/ubuntu focal/main armhf libice6 armhf 2:1.0.10-0ubuntu1 [34.1 kB] Get:144 http://ftpmaster.internal/ubuntu focal/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:145 http://ftpmaster.internal/ubuntu focal/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:146 http://ftpmaster.internal/ubuntu focal/main armhf libxmu6 armhf 2:1.1.3-0ubuntu1 [38.3 kB] Get:147 http://ftpmaster.internal/ubuntu focal/main armhf libxaw7 armhf 2:1.0.13-1 [141 kB] Get:148 http://ftpmaster.internal/ubuntu focal/main armhf libxi6 armhf 2:1.7.10-0ubuntu1 [25.0 kB] Get:149 http://ftpmaster.internal/ubuntu focal/universe armhf libzzip-0-13 armhf 0.13.62-3.2 [22.0 kB] Get:150 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf texlive-binaries armhf 2019.20190605.51237-3build1 [6159 kB] Get:151 http://ftpmaster.internal/ubuntu focal/main armhf xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:152 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf texlive-base all 2019.20200218-1 [20.8 MB] Get:153 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf ocaml-base-nox armhf 4.08.1-8 [400 kB] Get:154 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf hevea all 2.32-3build1 [887 kB] Get:155 http://ftpmaster.internal/ubuntu focal/universe armhf libapache-pom-java all 18-1 [4720 B] Get:156 http://ftpmaster.internal/ubuntu focal/main armhf libblas3 armhf 3.9.0-1 [102 kB] Get:157 http://ftpmaster.internal/ubuntu focal/main armhf libbrotli1 armhf 1.0.7-6build1 [256 kB] Get:158 http://ftpmaster.internal/ubuntu focal/universe armhf libcommons-parent-java all 43-1 [10.8 kB] Get:159 http://ftpmaster.internal/ubuntu focal/universe armhf libcommons-logging-java all 1.2-2 [60.3 kB] Get:160 http://ftpmaster.internal/ubuntu focal/main armhf libnghttp2-14 armhf 1.40.0-1 [68.0 kB] Get:161 http://ftpmaster.internal/ubuntu focal/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:162 http://ftpmaster.internal/ubuntu focal/main armhf libssh-4 armhf 0.9.3-2ubuntu1 [147 kB] Get:163 http://ftpmaster.internal/ubuntu focal/main armhf libcurl3-gnutls armhf 7.67.0-2ubuntu1 [199 kB] Get:164 http://ftpmaster.internal/ubuntu focal/universe armhf libdeflate0 armhf 1.5-3 [46.1 kB] Get:165 http://ftpmaster.internal/ubuntu focal/main armhf libexpat1-dev armhf 2.2.9-1 [99.9 kB] Get:166 http://ftpmaster.internal/ubuntu focal/main armhf libgfortran5 armhf 10-20200211-1ubuntu1 [251 kB] Get:167 http://ftpmaster.internal/ubuntu focal/universe armhf libhts3 armhf 1.10.2-3 [307 kB] Get:168 http://ftpmaster.internal/ubuntu focal/main armhf libimagequant0 armhf 2.12.2-1.1 [26.2 kB] Get:169 http://ftpmaster.internal/ubuntu focal/main armhf libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:170 http://ftpmaster.internal/ubuntu focal/universe armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:171 http://ftpmaster.internal/ubuntu focal/main armhf liblapack3 armhf 3.9.0-1 [1733 kB] Get:172 http://ftpmaster.internal/ubuntu focal/universe armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.2 kB] Get:173 http://ftpmaster.internal/ubuntu focal/main armhf liblmdb0 armhf 0.9.23-0ubuntu1 [37.8 kB] Get:174 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libmbedcrypto3 armhf 2.16.4-1build1 [134 kB] Get:175 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libmbedx509-0 armhf 2.16.4-1build1 [38.4 kB] Get:176 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf libmbedtls12 armhf 2.16.4-1build1 [64.7 kB] Get:177 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.8 armhf 3.8.2~rc2-1 [1393 kB] Get:178 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libpython3.8-dev armhf 3.8.2~rc2-1 [3135 kB] Get:179 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-dev armhf 3.8.0-3ubuntu1 [7036 B] Get:180 http://ftpmaster.internal/ubuntu focal/main armhf libpython3-all-dev armhf 3.8.0-3ubuntu1 [1112 B] Get:181 http://ftpmaster.internal/ubuntu focal/main armhf libwebpdemux2 armhf 0.6.1-2 [8760 B] Get:182 http://ftpmaster.internal/ubuntu focal/main armhf libwebpmux3 armhf 0.6.1-2 [16.0 kB] Get:183 http://ftpmaster.internal/ubuntu focal/universe armhf mafft armhf 7.453-1 [762 kB] Get:184 http://ftpmaster.internal/ubuntu focal/universe armhf muscle armhf 1:3.8.1551-2 [201 kB] Get:185 http://ftpmaster.internal/ubuntu focal/universe armhf ncbi-data all 6.1.20170106+dfsg1-8 [3518 kB] Get:186 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf ncbi-blast+ armhf 2.9.0-3 [9432 kB] Get:187 http://ftpmaster.internal/ubuntu focal/universe armhf phylip armhf 1:3.697+dfsg-1 [774 kB] Get:188 http://ftpmaster.internal/ubuntu focal/universe armhf prank armhf 0.0.170427+dfsg-2 [333 kB] Get:189 http://ftpmaster.internal/ubuntu focal/universe armhf preview-latex-style all 11.91-2ubuntu1 [185 kB] Get:190 http://ftpmaster.internal/ubuntu focal/universe armhf probcons armhf 1.12-12 [97.4 kB] Get:191 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf python-matplotlib-data all 3.1.2-1ubuntu3 [3789 kB] Get:192 http://ftpmaster.internal/ubuntu focal/main armhf python3-all armhf 3.8.0-3ubuntu1 [1100 B] Get:193 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] Get:194 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3.8-dev armhf 3.8.2~rc2-1 [515 kB] Get:195 http://ftpmaster.internal/ubuntu focal/main armhf python3-dev armhf 3.8.0-3ubuntu1 [1212 B] Get:196 http://ftpmaster.internal/ubuntu focal/main armhf python3-all-dev armhf 3.8.0-3ubuntu1 [1116 B] Get:197 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf python3-cycler all 0.10.0-3 [8132 B] Get:198 http://ftpmaster.internal/ubuntu focal/main armhf python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] Get:199 http://ftpmaster.internal/ubuntu focal/main armhf python3-decorator all 4.3.0-1.1build1 [9652 B] Get:200 http://ftpmaster.internal/ubuntu focal/universe armhf python3-isodate all 0.6.0-1ubuntu1 [24.0 kB] Get:201 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf python3-kiwisolver armhf 1.0.1-3build1 [54.6 kB] Get:202 http://ftpmaster.internal/ubuntu focal/main armhf python3-linecache2 all 1.0.0-3build1 [12.7 kB] Get:203 http://ftpmaster.internal/ubuntu focal/main armhf python3-pyparsing all 2.4.6-1 [61.3 kB] Get:204 http://ftpmaster.internal/ubuntu focal-proposed/main armhf python3-numpy armhf 1:1.17.4-5ubuntu3 [3034 kB] Get:205 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf python3-matplotlib armhf 3.1.2-1ubuntu3 [4391 kB] Get:206 http://ftpmaster.internal/ubuntu focal/main armhf 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Setting up python3-minimal (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Selecting previously unselected package python3. (Reading database ... 15112 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.0-3ubuntu1_armhf.deb ... Unpacking python3 (3.8.0-3ubuntu1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../001-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../003-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... 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Unpacking python3-scipy (1.3.3-3build1) ... Selecting previously unselected package sbuild-build-depends-python-biopython-dummy. Preparing to unpack .../220-sbuild-build-depends-python-biopython-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up liblmdb0:armhf (0.9.23-0ubuntu1) ... Setting up libgraphite2-3:armhf (1.3.13-11) ... Setting up liblcms2-2:armhf (2.9-4) ... Setting up ncbi-data (6.1.20170106+dfsg1-8) ... Setting up libpixman-1-0:armhf (0.38.4-0ubuntu1) ... Setting up mysql-common (5.8+1.0.5ubuntu2) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient21:armhf (8.0.19-0ubuntu4) ... Setting up libxau6:armhf (1:1.0.9-0ubuntu1) ... Setting up libhpdf-2.3.0:armhf (2.3.0+dfsg-1) ... Setting up libkeyutils1:armhf (1.6-6ubuntu1) ... Setting up libpsl5:armhf (0.20.2-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up mime-support (3.64ubuntu1) ... Setting up probcons (1.12-12) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libtexlua53:armhf (2019.20190605.51237-3build1) ... Setting up mafft (7.453-1) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:armhf (2.63.5-2) ... No schema files found: doing nothing. Setting up bwa (0.7.17-4) ... Setting up fonts-lyx (2.3.4.2-2) ... Setting up libijs-0.35:armhf (0.35-15) ... Setting up libtexluajit2:armhf (2019.20190605.51237-3build1) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-6build1) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up phylip (1:3.697+dfsg-1) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libicu65:armhf (65.1-1ubuntu1) ... Setting up libnghttp2-14:armhf (1.40.0-1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up libdeflate0 (1.5-3) ... Setting up gettext-base (0.19.8.1-10) ... Setting up libzzip-0-13:armhf (0.13.62-3.2) ... Setting up file (1:5.38-4) ... Setting up libnetpbm10 (2:10.0-15.3build1) ... Setting up fonts-urw-base35 (20170801.1-3) ... Setting up muscle (1:3.8.1551-2) ... Setting up emboss-data (6.6.0+dfsg-7ubuntu2) ... Setting up libldap-common (2.4.49+dfsg-1ubuntu1) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up t-coffee (12.00.7fb08c2-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:armhf (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.2.9-1) ... Setting up libfreetype6:armhf (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libjbig2dec0:armhf (0.17-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libidn11:armhf (1.33-2.2ubuntu2) ... Setting up libteckit0:armhf (2.5.8+ds2-5ubuntu1) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.4) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:armhf (0.7-4ubuntu6) ... Setting up libdbus-1-3:armhf (1.12.16-2ubuntu2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up t1utils (1.41-3) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up wise-data (2.4.1-21) ... Setting up libk5crypto3:armhf (1.17-6ubuntu4) ... Setting up libjpeg-turbo8:armhf (2.0.3-0ubuntu1) ... Setting up libkpathsea6:armhf (2019.20190605.51237-3build1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up libgfortran5:armhf (10-20200211-1ubuntu1) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libboost-thread1.71.0:armhf (1.71.0-6ubuntu3) ... Setting up clustalw (2.1+lgpl-6) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libmbedcrypto3:armhf (2.16.4-1build1) ... Setting up libopenjp2-7:armhf (2.3.1-1ubuntu4) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.6.4-1ubuntu2) ... Setting up fasttree (2.1.11-1) ... Setting up libkrb5-3:armhf (1.17-6ubuntu4) ... Setting up ocaml-base-nox (4.08.1-8) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:armhf (3.8.2~rc2-1) ... Setting up python3.8 (3.8.2~rc2-1) ... Setting up python-matplotlib-data (3.1.2-1ubuntu3) ... Setting up libwebpmux3:armhf (0.6.1-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up dialign (2.2.1-10) ... Setting up libxml2:armhf (2.9.10+dfsg-1ubuntu2) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libsynctex2:armhf (2019.20190605.51237-3build1) ... Setting up libpython3-stdlib:armhf (3.8.0-3ubuntu1) ... Setting up prank (0.0.170427+dfsg-2) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libargtable2-0 (13-1) ... Setting up libboost-program-options1.71.0:armhf (1.71.0-6ubuntu3) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libgs9-common (9.50~dfsg-5ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up liblapack3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.13.1-5build1) ... Setting up libharfbuzz-icu0:armhf (2.6.4-1ubuntu2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-13) ... Setting up libxcb-render0:armhf (1.13.1-5build1) ... Setting up libmbedx509-0:armhf (2.16.4-1build1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up wise (2.4.1-21) ... Setting up libwebpdemux2:armhf (0.6.1-2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libmbedtls12:armhf (2.16.4-1build1) ... Setting up libavahi-common3:armhf (0.7-4ubuntu6) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libxcb-shm0:armhf (1.13.1-5build1) ... Setting up libpaper-utils (1.1.28) ... Setting up clustalo (1.2.4-4) ... Setting up dssp (3.0.0-3build1) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Setting up ncbi-blast+ (2.9.0-3) ... Setting up python3-mysqldb (1.4.4-2build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-six (1.14.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up tex-common (6.13) ... update-language: texlive-base not installed and configured, doing nothing! Setting up python3-isodate (0.6.0-1ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-decorator (4.3.0-1.1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up libptexenc1:armhf (2019.20190605.51237-3build1) ... Setting up python3-pyparsing (2.4.6-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-linecache2 (1.0.0-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8:armhf (3.8.2~rc2-1) ... Setting up python3-cycler (0.10.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-reportlab-accel:armhf (3.5.34-1build1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up python3-rdflib (4.2.2-3build2) ... /usr/lib/python3/dist-packages/rdflib/plugins/memory.py:354: SyntaxWarning: "is" with a literal. Did you mean "=="? if triple is None or triple is (None,None,None): /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libx11-6:armhf (2:1.6.8-1) ... Setting up python3-dateutil (2.7.3-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libtiff5:armhf (4.1.0+git191117-2) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu2) ... Setting up python3-lib2to3 (3.8.0-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libavahi-client3:armhf (0.7-4ubuntu6) ... Setting up liblbfgsb0:armhf (3.0+dfsg.3-7) ... Setting up python3-pkg-resources (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu5) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up flex (2.6.4-6.2) ... Setting up gettext (0.19.8.1-10) ... Setting up python3-renderpm:armhf (3.5.34-1build1) ... Setting up python3-setuptools (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up preview-latex-style (11.91-2ubuntu1) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up python3-traceback2 (1.4.0-5build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-all (3.8.0-3ubuntu1) ... Setting up python3-networkx (2.4-3ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-pil:armhf (7.0.0-4build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8-dev:armhf (3.8.2~rc2-1) ... Setting up libgd3:armhf (2.2.5-5.2) ... Setting up python3-unittest2 (1.1.0-6.1build1) ... update-alternatives: using /usr/bin/python3-unit2 to provide /usr/bin/unit2 (unit2) in auto mode /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-kiwisolver (1.0.1-3build1) ... Setting up netpbm (2:10.0-15.3build1) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up python3-numpy (1:1.17.4-5ubuntu3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.8-dev (3.8.2~rc2-1) ... Setting up python3-reportlab (3.5.34-1build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libcups2:armhf (2.3.1-7) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up python3-matplotlib (3.1.2-1ubuntu3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libxmu6:armhf (2:1.1.3-0ubuntu1) ... Setting up python3-scipy (1.3.3-3build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3-dev:armhf (3.8.0-3ubuntu1) ... Setting up libgs9:armhf (9.50~dfsg-5ubuntu2) ... Setting up libxi6:armhf (2:1.7.10-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libxaw7:armhf (2:1.0.13-1) ... Setting up ghostscript (9.50~dfsg-5ubuntu2) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libpython3-all-dev:armhf (3.8.0-3ubuntu1) ... Setting up python3-dev (3.8.0-3ubuntu1) ... Setting up texlive-binaries (2019.20190605.51237-3build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2019.20200218-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up python3-all-dev (3.8.0-3ubuntu1) ... Setting up libldap-2.4-2:armhf (2.4.49+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.67.0-2ubuntu1) ... Setting up texlive-latex-base (2019.20200218-1) ... Setting up texlive-latex-recommended (2019.20200218-1) ... Setting up hevea (2.32-3build1) ... Setting up texlive-pictures (2019.20200218-1) ... Setting up texlive-fonts-recommended (2019.20200218-1) ... Setting up libhts3:armhf (1.10.2-3) ... Setting up libpq5:armhf (12.2-1) ... Setting up texlive-latex-extra (2019.202000218-1) ... Setting up samtools (1.10-3) ... Setting up python3-psycopg2 (2.8.4-1ubuntu4) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up emboss-lib (6.6.0+dfsg-7ubuntu2) ... Setting up emboss (6.6.0+dfsg-7ubuntu2) ... Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-python-biopython-dummy (0.invalid.0) ... Setting up dh-autoreconf (19) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244.2-1ubuntu1) ... Processing triggers for tex-common (6.13) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. 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python3-all_3.8.0-3ubuntu1 python3-all-dev_3.8.0-3ubuntu1 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3ubuntu1 python3-decorator_4.3.0-1.1build1 python3-dev_3.8.0-3ubuntu1 python3-distutils_3.8.0-1 python3-isodate_0.6.0-1ubuntu1 python3-kiwisolver_1.0.1-3build1 python3-lib2to3_3.8.0-1 python3-linecache2_1.0.0-3build1 python3-matplotlib_3.1.2-1ubuntu3 python3-minimal_3.8.0-3ubuntu1 python3-mysqldb_1.4.4-2build1 python3-networkx_2.4-3ubuntu1 python3-numpy_1:1.17.4-5ubuntu3 python3-pil_7.0.0-4build1 python3-pkg-resources_44.0.0-1 python3-psycopg2_2.8.4-1ubuntu4 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pyparsing_2.4.6-1 python3-rdflib_4.2.2-3build2 python3-renderpm_3.5.34-1build1 python3-reportlab_3.5.34-1build1 python3-reportlab-accel_3.5.34-1build1 python3-scipy_1.3.3-3build1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3-traceback2_1.4.0-5build1 python3-unittest2_1.1.0-6.1build1 python3.8_3.8.2~rc2-1 python3.8-dev_3.8.2~rc2-1 python3.8-minimal_3.8.2~rc2-1 readline-common_8.0-3 samtools_1.10-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.2-1ubuntu1 systemd-sysv_244.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 t-coffee_12.00.7fb08c2-4 t1utils_1.41-3 tar_1.30+dfsg-6 tex-common_6.13 texlive-base_2019.20200218-1 texlive-binaries_2019.20190605.51237-3build1 texlive-fonts-recommended_2019.20200218-1 texlive-latex-base_2019.20200218-1 texlive-latex-extra_2019.202000218-1 texlive-latex-recommended_2019.20200218-1 texlive-pictures_2019.20200218-1 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 ucf_3.0038+nmu1 util-linux_2.34-0.1ubuntu7 wise_2.4.1-21 wise-data_2.4.1-21 x11-common_1:7.7+19ubuntu14 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Feb 18 08:22:09 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-biopython_1.76+dfsg-1build1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.76+dfsg dpkg-source: info: unpacking python-biopython_1.76+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.76+dfsg-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying exclude_docstring_tests.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18723467 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18723467 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18723467 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.76+dfsg-1build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/python-biopython-1.76+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/<>/python-biopython-1.76+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/<>/python-biopython-1.76+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/<>/python-biopython-1.76+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>/python-biopython-1.76+dfsg' dh_auto_build pybuild --build -i python{version} -p 3.8 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/Index.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/bgzf.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/kNN.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/NaiveBayes.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/MarkovModel.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/File.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/SeqFeature.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/pairwise2.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/_utils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/MaxEntropy.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/triefind.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/LogisticRegression.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/SeqRecord.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/Seq.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align copying Bio/Align/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align copying Bio/Align/AlignInfo.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Application copying Bio/Application/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Application creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/Applications.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/Record.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/CAPS creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Compass copying Bio/Compass/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Compass creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Crystal creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data copying Bio/Data/IUPACData.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data copying Bio/Data/CodonTable.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data copying Bio/Data/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data copying Bio/Data/SCOPData.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank copying Bio/GenBank/utils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank copying Bio/GenBank/Record.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo copying Bio/Geo/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo copying Bio/Geo/Record.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM copying Bio/HMM/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM copying Bio/HMM/Utilities.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM copying Bio/HMM/Trainer.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG copying Bio/KEGG/REST.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Compound creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Enzyme creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Gene creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Map creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Medline copying Bio/Medline/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Medline creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/xms.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/matrix.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/meme.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/transfac.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/minimal.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/pfm.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/thresholds.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/mast.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/motifs/alignace.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR copying Bio/NMR/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR copying Bio/NMR/xpktools.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep copying Bio/PDB/Chain.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/PDBList.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/vectors.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Model.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/DSSP.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/PSEA.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Structure.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Selection.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Residue.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Atom.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Dice.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/Entity.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Des.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SVDSuperimposer creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/TogoWS creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/_io.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniGene creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise copying Bio/Wise/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise copying Bio/Wise/psw.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise copying Bio/Wise/dnal.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/_py3k creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL copying BioSQL/DBUtils.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL copying BioSQL/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL copying BioSQL/Loader.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL copying BioSQL/BioSeq.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy copying Bio/Affy/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy copying Bio/Affy/CelFile.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' copying Bio/cpairwise2module.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/trie.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/trie.h -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/triemodule.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio copying Bio/Align/_aligners.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> 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Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus copying Bio/PDB/kdtrees.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster copying Bio/KDTree/KDTree.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree copying Bio/KDTree/KDTree.h -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree copying Bio/KDTree/KDTreemodule.c -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree copying Bio/KDTree/Neighbor.h -> /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-armhf-3.8 creating build/temp.linux-armhf-3.8/Bio creating build/temp.linux-armhf-3.8/Bio/Align arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/Align/_aligners.c -o build/temp.linux-armhf-3.8/Bio/Align/_aligners.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/Align/_aligners.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so building 'Bio.cpairwise2' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/cpairwise2module.c -o build/temp.linux-armhf-3.8/Bio/cpairwise2module.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/cpairwise2module.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-armhf-3.8/Bio/Nexus arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/Nexus/cnexus.c -o build/temp.linux-armhf-3.8/Bio/Nexus/cnexus.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/Nexus/cnexus.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-armhf-3.8/Bio/PDB creating build/temp.linux-armhf-3.8/Bio/PDB/QCPSuperimposer arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-armhf-3.8/Bio/PDB/QCPSuperimposer/qcprotmodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/PDB/QCPSuperimposer/qcprotmodule.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so building 'Bio.motifs._pwm' extension creating build/temp.linux-armhf-3.8/Bio/motifs arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/motifs/_pwm.c -o build/temp.linux-armhf-3.8/Bio/motifs/_pwm.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/motifs/_pwm.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-armhf-3.8/Bio/Cluster arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/Cluster/cluster.c -o build/temp.linux-armhf-3.8/Bio/Cluster/cluster.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armhf-3.8/Bio/Cluster/clustermodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/Cluster/cluster.o build/temp.linux-armhf-3.8/Bio/Cluster/clustermodule.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so building 'Bio.PDB.kdtrees' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/PDB/kdtrees.c -o build/temp.linux-armhf-3.8/Bio/PDB/kdtrees.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/PDB/kdtrees.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-armhf-3.8/Bio/KDTree arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/KDTree/KDTree.c -o build/temp.linux-armhf-3.8/Bio/KDTree/KDTree.o arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-armhf-3.8/Bio/KDTree/KDTreemodule.o arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/KDTree/KDTree.o build/temp.linux-armhf-3.8/Bio/KDTree/KDTreemodule.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so building 'Bio.trie' extension arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.8 -c Bio/triemodule.c -o build/temp.linux-armhf-3.8/Bio/triemodule.o Bio/triemodule.c:585:5: warning: initialization of ‘Py_hash_t (*)(PyObject *)’ {aka ‘int (*)(struct _object *)’} from incompatible pointer type ‘long int (*)(PyObject *)’ {aka ‘long int (*)(struct _object *)’} [-Wincompatible-pointer-types] 585 | trie_nohash, /*tp_hash */ | ^~~~~~~~~~~ Bio/triemodule.c:585:5: note: (near initialization for ‘Trie_Type.tp_hash’) arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.8 -c Bio/trie.c -o build/temp.linux-armhf-3.8/Bio/trie.o In file included from /usr/include/string.h:494, from Bio/trie.c:17: In function ‘strncat’, inlined from ‘_with_prefix_helper.constprop’ at Bio/trie.c:595:6: /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/trie.c: In function ‘_with_prefix_helper.constprop’: Bio/trie.c:561:14: note: length computed here 561 | suffixlen = strlen(suffix); | ^~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/python-biopython-1.76+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/Bio/triemodule.o build/temp.linux-armhf-3.8/Bio/trie.o -o /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/trie.cpython-38-arm-linux-gnueabihf.so cd Doc && make make[2]: Entering directory '/<>/python-biopython-1.76+dfsg/Doc' hevea -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:218: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:228: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:151: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:151: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:156: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:164: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:165: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:175: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:379: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:456: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:576: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:582: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:734: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:827: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:888: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:158: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:217: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:230: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:280: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:283: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:289: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:297: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:529: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:641: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:682: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:685: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:849: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:850: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:863: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:46: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:71: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:153: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:312: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:332: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:335: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:412: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:415: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:427: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:427: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:428: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:518: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:518: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:521: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:521: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:521: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:523: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:559: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:565: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:569: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:572: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:575: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:582: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:657: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:778: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:799: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:861: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:943: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1188: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1257: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1299: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1400: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:115: Warning: Undefined label: 'sec:alignment-format-method' ./Tutorial/chapter_align.tex:455: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:639: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:814: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:868: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:872: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:899: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:907: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1046: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1268: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1633: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1646: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1704: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1733: Warning: Undefined label: 'sec:pairwise-substitution-scores' 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label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:345: Warning: Undefined label: 'sec:gd_nice_example' 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./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:200: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined 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./Tutorial/chapter_cookbook.tex:1568: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1582: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_cookbook.tex:1636: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1645: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1645: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1669: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1669: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1787: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_advanced.tex:162: Warning: Undefined label: 'sec:freq_table' ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:32: 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Rerun me to get cross-references right. Run, run, again... 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outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:229: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1418: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1541: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1541: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1636: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1645: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1645: Warning: '_' occurring outside math mode ./Tutorial/chapter_advanced.tex:223: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:355: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:124: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long 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outside math mode ./Tutorial.tex:127: Warning: line too long ./Tutorial.tex:138: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:138: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:142: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:213: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:539: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:218: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:228: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:35: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:49: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:69: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:76: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:83: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:88: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:124: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:151: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:151: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:156: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:164: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:165: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:175: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:137: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:212: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:379: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:397: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:456: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:576: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:582: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:734: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:827: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:888: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:21: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:34: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:38: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:121: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:140: Warning: line too long ./Tutorial/chapter_seq_annot.tex:158: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:203: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:217: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:223: Warning: line too long ./Tutorial/chapter_seq_annot.tex:230: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:280: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:283: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:289: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:297: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:529: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:535: Warning: line too long ./Tutorial/chapter_seq_annot.tex:544: Warning: line too long ./Tutorial/chapter_seq_annot.tex:633: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:641: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:682: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:685: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:705: Warning: line too long ./Tutorial/chapter_seq_annot.tex:765: Warning: line too long ./Tutorial/chapter_seq_annot.tex:841: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:849: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:850: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:863: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:934: Warning: line too long ./Tutorial/chapter_seq_annot.tex:965: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:13: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:15: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:23: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:46: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:46: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:46: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:71: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:153: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:153: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:201: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:251: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:312: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:332: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:335: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:412: Warning: Undefined label: 'sec:SeqIO-index-bgzf' 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./Tutorial/chapter_seqio.tex:572: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:575: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:582: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:657: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:778: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:799: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:845: Warning: line too long ./Tutorial/chapter_seqio.tex:861: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:943: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1188: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1197: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1232: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1247: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1257: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1299: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1400: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:31: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:35: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_align.tex:115: Warning: Undefined label: 'sec:alignment-format-method' ./Tutorial/chapter_align.tex:455: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_align.tex:639: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_align.tex:814: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_align.tex:868: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:872: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:899: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:907: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1046: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1268: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1504: Warning: line too long ./Tutorial/chapter_align.tex:1506: Warning: line too long ./Tutorial/chapter_align.tex:1633: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_align.tex:1646: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_align.tex:1704: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_align.tex:1733: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_align.tex:1733: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1733: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1734: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:1737: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1738: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1764: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1764: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1791: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:1895: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_align.tex:1941: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1941: Warning: line too long ./Tutorial/chapter_align.tex:1941: Warning: line too long ./Tutorial/chapter_align.tex:1941: Warning: line too long ./Tutorial/chapter_align.tex:1985: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:2120: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2125: Warning: line too long ./Tutorial/chapter_align.tex:2233: Warning: line too long ./Tutorial/chapter_align.tex:2234: Warning: line too long ./Tutorial/chapter_align.tex:2235: Warning: line too long ./Tutorial/chapter_align.tex:2265: Warning: line too long ./Tutorial/chapter_align.tex:2266: Warning: line too long ./Tutorial/chapter_align.tex:2267: Warning: line too long ./Tutorial/chapter_align.tex:2301: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2301: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2504: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2821: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2893: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:2893: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:2917: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:58: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:119: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:124: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:155: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:164: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:188: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:192: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:236: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:282: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:284: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:299: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:335: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:433: Warning: line too long ./Tutorial/chapter_blast.tex:435: Warning: line too long 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./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:22: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:59: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:62: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:215: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:219: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:233: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:296: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:322: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:322: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:416: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:478: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:480: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:561: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:567: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:776: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:776: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:896: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:942: Warning: line too long ./Tutorial/chapter_entrez.tex:1057: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1060: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1064: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1107: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1151: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1151: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1153: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1205: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1240: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1247: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1248: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1300: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1324: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1325: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1385: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1416: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1493: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1498: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1522: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:30: Warning: line too long ./Tutorial/chapter_uniprot.tex:38: Warning: line too long ./Tutorial/chapter_uniprot.tex:41: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:49: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:345: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:495: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:85: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:243: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:252: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:256: Warning: Image in text ./Tutorial/chapter_pdb.tex:389: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:434: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:451: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:560: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:574: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:578: 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citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 'fig:phylo-simple-draw' ./Tutorial/chapter_phylo.tex:104: Warning: Image in text ./Tutorial/chapter_phylo.tex:192: Warning: Undefined label: 'fig:phylo-color-draw' ./Tutorial/chapter_phylo.tex:199: Warning: Image in text ./Tutorial/chapter_phylo.tex:346: Warning: line too long ./Tutorial/chapter_phylo.tex:360: Warning: Image in text ./Tutorial/chapter_phylo.tex:711: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_phylo.tex:782: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:164: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:165: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:541: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:549: Warning: line too long 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./Tutorial/chapter_motifs.tex:1567: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:277: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:345: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:555: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:599: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:606: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:610: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:615: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:646: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:659: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:667: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:710: Warning: line too long ./Tutorial/chapter_cluster.tex:717: Warning: line too long 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Overfull \hbox (4.48064pt too wide) in paragraph at lines 886--889 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [56]) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 57 undefined on input line 943. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 73 undefined on input l ine 455. Overfull \hbox (39.68698pt too wide) in paragraph at lines 453--458 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/F67EB3EFC88C7F65142EC6767FF0AFE814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BB07BFEAEC0855950DABA0EE61AB192B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F94237F1B0C3E6DC309DEB6BB87A63E014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [73]) (./_minted-Tutorial/8F45D3C2413A4CA1D91A89D61294165814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/526DE630895A1CFB3DEA37685B34B1BA14FA033DCB1376922271CBD58A8 A4A36.pygtex) [74] (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/F825D7C594903CE498C70B50088C497114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [75]) (./_minted-Tutorial/9997F06B70C62809223AE6CDAE409E2F14FA033DCB1376922271CBD58A8 A4A36.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 76 undefined on input l ine 639. 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Overfull \hbox (0.78606pt too wide) in paragraph at lines 1631--1634 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 90 undefined on input l ine 1646. (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [90]) LaTeX Warning: Citation `waterman1987' on page 91 undefined on input line 1704. (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:pairwise-substitution-scores' on page 91 undefine d on input line 1733. 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The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1830--1834 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: Reference `table:align-meta-attributes' on page 93 undefined on input line 1895. Overfull \hbox (32.852pt too wide) in paragraph at lines 1899--1943 [][] (./_minted-Tutorial/52E7DD48238DDBFB9DE1318A616EEA0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [93] [94] [95]) LaTeX Warning: Reference `sec:pairwise-examples' on page 96 undefined on input line 1985. 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[118] [119 <./images/BlastRecord.png>] [120 <./i mages/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [121] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [122]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [123]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [124]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [125] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [126]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [127]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [128] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [129] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69CA04D2F1A8BE0FD871F68441214DFA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 131 undefined on input lin e 734. Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/3126C0E9DA3CE19C3C28004A18A3B48867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [131]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [132]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [133] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5CF3105B98EAD5BFC67DAB51751378F867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [134] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 135 undefined on input line 1082. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . 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LaTeX Warning: Citation `talevich2012' on page 198 undefined on input line 9. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [198]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) LaTeX Warning: Reference `fig:phylo-simple-draw' on page 199 undefined on input line 96. (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. 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[203] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [204 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. 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(./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex [285 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex [286]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 287 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 287 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 287 undefined on input li ne 901. Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 474--476 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 309 undefined on input line 479. 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$210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [63]) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [64]) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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(./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C5CCC8DD50EFD0D9A75909DCB5134E3114FA033DCB1376922271CBD58A8 A4A36.pygtex [69]) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1337--1339 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [70] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1381--1385 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [71] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 453--458 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/F67EB3EFC88C7F65142EC6767FF0AFE814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BB07BFEAEC0855950DABA0EE61AB192B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F94237F1B0C3E6DC309DEB6BB87A63E014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [80]) (./_minted-Tutorial/8F45D3C2413A4CA1D91A89D61294165814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/526DE630895A1CFB3DEA37685B34B1BA14FA033DCB1376922271CBD58A8 A4A36.pygtex) [81] (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/F825D7C594903CE498C70B50088C497114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [82]) (./_minted-Tutorial/9997F06B70C62809223AE6CDAE409E2F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (16.49278pt too wide) in paragraph at lines 641--644 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . 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The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5C61524B99B9EB0B1188FA913DB74CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4A4165B3B710F3328DE27D13D1FDD0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E6EC8CA7208E2B4D0E1C09607D4D544367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [91] (./_minted-Tutorial/CAE38F81A1D019D5521A277248175B7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DDF45D576AE1ADD55C0A0943C2F2162467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) [92] (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8EEB60D5ACC558D826F87E267ADD6ACF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [93] (./_minted-Tutorial/A1C3A08FE82B17F3E1148CA705106BDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [94] (./_minted-Tutorial/22A95DFD34F9A46AA0FD0D1BA057DEE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33F41ECEE9298ED97DBC0E4EF724A92367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CBF601313030C01230C4BB8FFA8A990C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE0EA110F0D219D588B9C0B7DEC746B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6784884C27E4405A02EE59C0B5C842E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/169CB53D6C778B2D796C0965E6502A6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/8D1D8D68DB8CCFDB1DCEA6F3405B292567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8B72D4D00CC6F9AA4DA3A84A74E2CC5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [96] Overfull \hbox (0.78606pt too wide) in paragraph at lines 1631--1634 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B28DCB7501FFE4BC59788E9B56D4267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99]) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1830--1834 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1830--1834 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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lines 2209--2210 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment.) [125] [126 <./images/BlastRecord.png>] [127 <./i mages/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [128] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [131]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [132] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [134]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [136] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69CA04D2F1A8BE0FD871F68441214DFA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/3126C0E9DA3CE19C3C28004A18A3B48867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5CF3105B98EAD5BFC67DAB51751378F867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [142]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [143] [144] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [206] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [207 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[210] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [211 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [212] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [213] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [214] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [215]) [216] (./Tutorial/chapter_motifs.tex Chapter 14. 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[244] [245] [246] [247] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [248]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [249] [250] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [251] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [252] [253] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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[288 <./images/plasmid_linear_nice.png (PNG copy) >] [289 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [290]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [291]) Excluding 'htmlonly' comment. [292 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [293]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [294] Excluding 'htmlonly' comment. [295 <./image s/three_track_cl.png>] [296 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [297] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [298] [299 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 474--476 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[325] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1115--1118 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [326 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [327 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [328 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. 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(./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C7867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [61]) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF406567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E83C4A508EFF6905997163871410F4F267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6209F8400B12665DC9E51BC20774DF7014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [62] Overfull \hbox (9.93459pt too wide) in paragraph at lines 843--848 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 886--889 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C16EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E4106EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [63]) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A277767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [64]) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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(./_minted-Tutorial/AA1E8DC650125C8460BF37E380CAC1AB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1435F1CEA90A4D217A423340747F87F067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA5B97CA60402CA0078F215AFF31799567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C5CCC8DD50EFD0D9A75909DCB5134E3114FA033DCB1376922271CBD58A8 A4A36.pygtex [69]) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F5314FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1337--1339 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [70] (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1381--1385 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB14FA033DCB1376922271CBD58A8 A4A36.pygtex)) [71] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 453--458 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/F67EB3EFC88C7F65142EC6767FF0AFE814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/BB07BFEAEC0855950DABA0EE61AB192B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F94237F1B0C3E6DC309DEB6BB87A63E014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F0C640781732628151051B15D85C 9070A.pygtex [80]) (./_minted-Tutorial/8F45D3C2413A4CA1D91A89D61294165814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF1890C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/526DE630895A1CFB3DEA37685B34B1BA14FA033DCB1376922271CBD58A8 A4A36.pygtex) [81] (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF990C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/F825D7C594903CE498C70B50088C497114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F1614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F560C640781732628151051B15D85C 9070A.pygtex [82]) (./_minted-Tutorial/9997F06B70C62809223AE6CDAE409E2F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (16.49278pt too wide) in paragraph at lines 641--644 []\OT1/cmr/m/n/10 Internally the [][]\OT1/cmtt/m/n/10 format() []\OT1/cmr/m/n/1 0 method is us-ing the [][]\OT1/cmtt/m/n/10 StringIO []\OT1/cmr/m/n/10 string b ased han-dle and call-ing [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write()[]\OT1/cmr/m/ n/10 . 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The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/008DB28D2F01F3F29F1F82EB0591003367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/AE24E0D965703AA4106AE5CF699F0A9A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [89] (./_minted-Tutorial/801A8AB951B5DA791C92C02EB6139DB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E5C61524B99B9EB0B1188FA913DB74CC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A4A4165B3B710F3328DE27D13D1FDD0D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [90] (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E745467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C4AEB9BD8A76F10ACD8C01403E911E8C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/512DFE88FFA610D4550AF5A23966733167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E6EC8CA7208E2B4D0E1C09607D4D544367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [91] (./_minted-Tutorial/CAE38F81A1D019D5521A277248175B7067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DDF45D576AE1ADD55C0A0943C2F2162467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC72660C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E0C640781732628151051B15D85C 9070A.pygtex) [92] (./_minted-Tutorial/798933B773DD1AAF5C2DC54E06491DCF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/44B6EBA222E5AE2CF0E223148840D8AE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8EEB60D5ACC558D826F87E267ADD6ACF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4988824A3CF97A3309EED328C1CB00D167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A8767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [93] (./_minted-Tutorial/A1C3A08FE82B17F3E1148CA705106BDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [94] (./_minted-Tutorial/22A95DFD34F9A46AA0FD0D1BA057DEE567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/33F41ECEE9298ED97DBC0E4EF724A92367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CBF601313030C01230C4BB8FFA8A990C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE0EA110F0D219D588B9C0B7DEC746B867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/6784884C27E4405A02EE59C0B5C842E767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/169CB53D6C778B2D796C0965E6502A6D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [95]) (./_minted-Tutorial/8D1D8D68DB8CCFDB1DCEA6F3405B292567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/8B72D4D00CC6F9AA4DA3A84A74E2CC5E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [96] Overfull \hbox (0.78606pt too wide) in paragraph at lines 1631--1634 \OT1/cmr/m/n/10 The new [][]\OT1/cmtt/m/n/10 Bio.Align.PairwiseAligner []\OT1/c mr/m/n/10 im-ple-ments the Needleman-Wunsch, Smith-Waterman, Go-toh (three- (./_minted-Tutorial/554024580088332FAF0EA9296BACE82E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/0ED9274F8C36E3C47BA70FD5BADC364467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A6265A24C74E31AABCC4CBCDC431287F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71831DAF6DA69540332844566CA78C5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [97]) (./_minted-Tutorial/827F8E23B39B02EEFF7FF938570EE26E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CE67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE0467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [98]) (./_minted-Tutorial/0EDAB1611DCCA854E910FF7DD9D639FA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1759F78B85C00128FE82428859F9AAB267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/143B28DCB7501FFE4BC59788E9B56D4267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [99]) (./_minted-Tutorial/17CE58BCB76575958EE7A76C89836E6967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1830--1834 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1830--1834 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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lines 2209--2210 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C713471667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE2067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/71A68A4BDF8B5654D3E2E0470AE163B467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [106]) (./_minted-Tutorial/CE4E999FF33F9D09A2BB895447AA462967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E4691AEB06522E457CDE497E3092DE867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [107]) (./_minted-Tutorial/2E1DF2678D7C68CA2C465BCE6BBBBD6367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C149B172A838F697839B85AE70CC6CDB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/467CA50C36874E405E988587FEC0768667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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Excluding 'htmlonly' comment.) [125] [126 <./images/BlastRecord.png>] [127 <./i mages/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E0C640781732628151051B15D85C 9070A.pygtex) [128] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [129]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B5195567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [130]) (./_minted-Tutorial/5218313E7181C19A936D3F4347E1930A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7BE69614D007F3BE3249A547A9661D0767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE32767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [131]) (./_minted-Tutorial/DC6D0E585B2AACAC1C88A760863B4E4E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/130BC5013C07805E69A888444A0B34DB67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FF67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A0367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [132] (./_minted-Tutorial/0E8B9F4E4323CB258CA049D41E4AB7F767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAA6FD197F3F78FDFB781210387FEC2667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [133]) (./_minted-Tutorial/67A62206561049F4B7E307FD79F028C967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5E1CC554EC31697163DDD9D33E32A45667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [134]) (./_minted-Tutorial/0A806FC81D8F7F64321B4A6911027F0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [135] (./_minted-Tutorial/DC76D831C6E940E11ED2C9452F770E0C67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3A61EC24A4603554A3865574A6B7378067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [136] (./_minted-Tutorial/4D85AB21D9819B066A1C948098FDB54B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE57357767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/4D9A79F8BB08FCA20BAEA3DFAAA08BA467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/62792AA2C0390B83FD6A91F3B267312A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [137]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD88044467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69CA04D2F1A8BE0FD871F68441214DFA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 738--740 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/3126C0E9DA3CE19C3C28004A18A3B48867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/64A5027CB01EBC16D0BBBCFA493BDAE167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A353690967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B35C581DC0102E618595FCC0BE2AFE9867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [138]) (./_minted-Tutorial/23A338D38E31EFFAE0C56C5A5AAB567A67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/F1953B67CE735DCB6EDDECF134C333B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/69130C6EA441D4D1DEB35E75101C9AB967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [139]) (./_minted-Tutorial/688EDDC69F177DE7868A4B0C32B1499267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E295C926B8D61E45F6C5FA1C0767BFD467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [140] (./_minted-Tutorial/4CFB05EC7DD8FA77EFE275E81B5A1B9767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/5CF3105B98EAD5BFC67DAB51751378F867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [141] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1050--1054 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/B5F76D201899B345CB64AACD67C7346067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (20.13245pt too wide) in paragraph at lines 1080--1085 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [142]) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E986867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/E4B312798560C8CE4ABF272A364D9E2F67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/35C0940CA4025285AAECA54EF82C993367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (11.82602pt too wide) in paragraph at lines 1160--1163 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C17667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [143] [144] (./Tutorial/chapter_entrez.tex Chapter 9. [145] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013B67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7692669934D8ED6DEE1B8B668474542167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [146]) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA3667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [147]) (./_minted-Tutorial/C21F612C84412948C9890ED976F536B067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/B40E136307D84542C2292F35A77DC45E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C00867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/03DD15474BC34E37527B593FC22220FC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FAC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) 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(./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B115204AFF525DDD4F3CF69B79C0739114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC14FA033DCB1376922271CBD58A8 A4A36.pygtex [203])) [204] (./Tutorial/chapter_phylo.tex Chapter 13. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC56710C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE1586EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C2467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [205]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3E6F23F473B4E07E8F7181EEE5B0B4A567B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBA67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [206] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A867B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1AD67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 175--178 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF2767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B967B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [207 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[210] Overfull \hbox (19.85507pt too wide) in paragraph at lines 438--445 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [211 <./images/phylo-draw-example.png>] Overfull \hbox (13.48741pt too wide) in paragraph at lines 493--496 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [212] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF614FA033DCB1376922271CBD58A8 A4A36.pygtex) [213] (./_minted-Tutorial/5B477DBF8C94B1E6FDC020E6A741C0DC67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/A317CBB9F004B52870B25AB07ACF279167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) Overfull \hbox (4.04672pt too wide) in paragraph at lines 704--707 []\OT1/cmr/m/n/10 A sim-i-lar wrap-per for RAxML ([][]$\OT1/cmtt/m/n/10 https : / / sco . h-[]its . org / exelixis / software . html$[][]\OT1/cmr/m/n/10 ) was added in Biopy- [214] (./_minted-Tutorial/4A4A0B08C37495B73842BFCD67A687D367B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D267B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [215]) [216] (./Tutorial/chapter_motifs.tex Chapter 14. 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[244] [245] [246] [247] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED414067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/2CEA2595B9B8CEAD10513E8D15566D0167B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE60173582767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A250014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C067B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex [248]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 244--245 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB3467B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [249] [250] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762E67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) [251] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF9262667B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED1814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC14FA033DCB1376922271CBD58A8 A4A36.pygtex) [252] [253] Overfull \hbox (16.73593pt too wide) in paragraph at lines 422--423 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. 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[288 <./images/plasmid_linear_nice.png (PNG copy) >] [289 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA8914FA033DCB1376922271CBD58A8 A4A36.pygtex [290]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A14FA033DCB1376922271CBD58A8 A4A36.pygtex [291]) Excluding 'htmlonly' comment. [292 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA11114FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB14FA033DCB1376922271CBD58A8 A4A36.pygtex [293]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD184014FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C2814FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [294] Excluding 'htmlonly' comment. [295 <./image s/three_track_cl.png>] [296 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F72841497714FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F14FA033DCB1376922271CBD58A8 A4A36.pygtex) [297] (./_minted-Tutorial/0AC11BF466D4AA0B0536F05378BEC9CC14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C14FA033DCB1376922271CBD58A8 A4A36.pygtex [298] [299 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E69295572088714FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (4.57849pt too wide) in paragraph at lines 474--476 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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[325] Overfull \hbox (4.00363pt too wide) in paragraph at lines 1115--1118 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/7C23BDB073E316E7093E4D3A77BD752E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD14FA033DCB1376922271CBD58A8 A4A36.pygtex [326 <./images/hist_plot.png>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF714FA033DCB1376922271CBD58A8 A4A36.pygtex) [327 <./images/gc_plot.png>] (./_minted-Tutorial/219B67DCB31F2334EDD0B85471FABDEA14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F414FA033DCB1376922271CBD58A8 A4A36.pygtex [328 <./images/dot_plot.png>]) Excluding 'htmlonly' comment. 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[331 <./images/SRR001666.png>] (./_minted-Tutorial/9D2779E6D02C00C016A7A73A452EBC7314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/06CAA397021B5D0CD904B7CF0209DCA314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/6E116EF74541395FE187AA3D3E41BEE90C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/16711B0A63F93BBACAF3C86CFFB7BEFA0C640781732628151051B15D85C 9070A.pygtex [332]) (./_minted-Tutorial/96EC77291C119EF69670ACDB1C35CE210C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/6C14F4F0692168BA7165351C706B643D14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E686FC2D122CF1560FAF4512CD53777F14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E09A8EBF1B7CB9F831FC2D9DA481453514FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/E598995EF885D7803642E8685DCB8F900C640781732628151051B15D85C 9070A.pygtex) Overfull \hbox (49.0755pt too wide) in paragraph at lines 1531--1532 []\OT1/cmr/m/n/10 You can ac-cess any el-e-ment of the PSSM by sub-script-ing l ike [][]\OT1/cmtt/m/n/10 your_pssm[sequence_number][residue_count_name][]\OT1/c mr/m/n/10 . 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(./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD06216EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D046EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D90736EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [338] (./_minted-Tutorial/1D61711C528533FBB5B198E42FABC51C0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex [339]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A714FA033DCB1376922271CBD58A8 A4A36.pygtex) [340] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E14FA033DCB1376922271CBD58A8 A4A36.pygtex [341]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F46EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA2914FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/11CE164E202C147B18E9ADEA155A760214FA033DCB1376922271CBD58A8 A4A36.pygtex [342]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F6EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [343] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B034566EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC436EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex)) [344] (./Tutorial/chapter_advanced.tex Chapter 22. Overfull \hbox (61.48412pt too wide) in paragraph at lines 40--42 []\OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 SeqMat []\OT1/cmr/m/n/10 class de-ri ves from a dic-tio-nary. The dic-tio-nary is of the form [][]\OT1/cmtt/m/n/10 { (i1,j1):n1, (i1,j2):n2,...,(ik,jk):nk} (./_minted-Tutorial/B9AA829C45C3718734961EED663138A314FA033DCB1376922271CBD58A8 A4A36.pygtex) [345] (./_minted-Tutorial/C91962005319864FA8A80F7CE461D6C614FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/949D631F5CFAE16DADE8A9B46DC246FE14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/D57E65C15B8337B55081A0ABDE216E8B14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/30813B956DA3EC8A9CBD746D69F32D000C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/758DB025D865DFC37AEBF0F3FB3EAF8D0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/0C3F6A07854D0D0ACBB80A71C6F047250C640781732628151051B15D85C 9070A.pygtex) [346] (./_minted-Tutorial/01598304B617194419D3D22E288DDBB414FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/2EE2B4E009A2AA257D683D54D33A379814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/092222FC5487DB13D5744BF56515DC5767B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex) (./_minted-Tutorial/3FBCEA7E512BCF1A100675C665984F1E14FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F90C13646B17B56314C7FA6500465F7F14FA033DCB1376922271CBD58A8 A4A36.pygtex) Overfull \hbox (30.74179pt too wide) in paragraph at lines 197--198 [][][]\OT1/cmtt/m/n/10 factor[]\OT1/cmr/m/n/10 : fac-tor used to mul-ti-ply the log-odds val-ues. Each en-try is gen-er-ated by log(LOM[key])*factor (./_minted-Tutorial/4C4AB8D87E6E7015C3AF4CC8FB7D06D214FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/F0DBB62056D7DE5645E8992BD297EBAE14FA033DCB1376922271CBD58A8 A4A36.pygtex [347]) (./_minted-Tutorial/3C40FC62A59A2301A420D8E25D52D8FB0C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/9AD3043016CF73EB0A57C6DFA985DB280C640781732628151051B15D85C 9070A.pygtex) (./_minted-Tutorial/D009E3834E447E34C2A0FF5922F938B814FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/4E08040CCAE3D812784651E566C1B38314FA033DCB1376922271CBD58A8 A4A36.pygtex) (./_minted-Tutorial/ACABC0B74314C452E389E9078BF83C3D67B6D4EEEA70E83368C1BFCE3E2 2EA7D.pygtex)) [348] (./Tutorial/chapter_contributing.tex Chapter 23. [349] (./_minted-Tutorial/7713FA97EA16E9508BA3E6B9449449256EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A366EA57A5CF4D3F0EFF6188E720E8 9664B.pygtex) [350]) [351] (./Tutorial/chapter_appendix.tex Chapter 24. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-02-02> patch level 2 L3 programming layer <2020-02-14> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2019/12/20 v1.4l Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/generic/atbegshi/atbegshi.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 257--262 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 298--304 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 298--304 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- LaTeX Warning: Reference `sub:The-Structure-object' on page 4 undefined on inpu t line 321. [4] [5] LaTeX Warning: Reference `cap:SMCRA' on page 6 undefined on input line 528. [6] [7 <./images/smcra.png (PNG copy)>] [8] LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 730. LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 759. LaTeX Warning: Reference `sub:Analysis' on page 9 undefined on input line 801. [9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 806. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 961--965 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 969--974 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide LaTeX Warning: Reference `cap:DSSP-codes' on page 11 undefined on input line 99 1. [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1098--1099 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1119--1124 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1281--1289 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 155643 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-02-02> patch level 2 L3 programming layer <2020-02-14> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2019/12/20 v1.4l Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/generic/atbegshi/atbegshi.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 257--262 \T1/pbk/l/n/10 file to their val-ues. 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Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2020-02-02> patch level 2 L3 programming layer <2020-02-14> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2019/12/20 v1.4l Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/generic/atbegshi/atbegshi.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/atveryend/atveryend.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 257--262 \T1/pbk/l/n/10 file to their val-ues. 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The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1098--1099 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) [12] Overfull \hbox (20.6135pt too wide) in paragraph at lines 1119--1124 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1281--1289 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 157155 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/<>/python-biopython-1.76+dfsg/Doc' make[1]: Leaving directory '/<>/python-biopython-1.76+dfsg' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/<>/python-biopython-1.76+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.8 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:217: set -e; \ mkdir -p /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/home; \ mkdir -p /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples; \ cp -a Doc/Tutorial.tex /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/Tutorial /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc; \ cp -a Doc/examples /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc; \ cp -a Tests /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build; \ cd /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/home python3.8 run_tests.py --offline x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! x_order_2: colinear! test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_FSSP ... ok test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ blastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ blastp and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ blastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ deltablast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ makeblastdb and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -blastdb_version) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ psiblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -ipglist,-negative_ipglist,-negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ rpsblast and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -sorthits,-sorthsps,-subject_besthit) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ rpstblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -sorthits,-sorthsps) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ tblastn and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py:398: UserWarning: NCBI BLAST+ tblastx and Biopython out sync. Please update Biopython, or report this issue if you are already using the latest version. (Extra args: ; Missing: -negative_taxidlist,-negative_taxids,-sorthits,-sorthsps,-subject_besthit,-taxidlist,-taxids) warnings.warn("NCBI BLAST+ %s and Biopython out sync. Please " ok test_NCBI_qblast ... skipping. internet not available test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDBList ... skipping. internet not available test_PDB_Dice ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFParser ... ok test_PDB_Polypetide ... ok test_PDB_StructureAlignment ... /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain A is discontinuous at line 13298. warnings.warn( /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain B is discontinuous at line 13344. warnings.warn( ok test_PDB_Superimposer ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_QCPSuperimposer ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_Xdna ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Seq.py:2828: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( ok test_geo ... ok test_kNN ... ok test_lowess ... /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics/__init__.py:14: BiopythonDeprecationWarning: Bio.Statistics has been deprecated, and we intend to remove it in a future release of Biopython. warnings.warn("Bio.Statistics has been deprecated, and we intend to remove it " ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok test_trie ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Alphabet.IUPAC docstring test ... ok Bio.Alphabet.Reduced docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Crystal docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.FSSP docstring test ... ok Bio.FSSP.FSSPTools docstring test ... ok Bio.FSSP.fssp_rec docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.Index docstring test ... ok Bio.KDTree docstring test ... ok Bio.KDTree.KDTree docstring test ... ok Bio.KDTree._CKDTree docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... skipped, missing Python dependency Bio.PDB.mmtf.DefaultParser docstring test ... skipped, missing Python dependency Bio.PDB.mmtf.mmtfio docstring test ... skipped, missing Python dependency Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.PopGen.GenePop.Utils docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._convert docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.Statistics docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.SubsMat docstring test ... ok Bio.SubsMat.FreqTable docstring test ... ok Bio.SubsMat.MatrixInfo docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._py3k docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.chisq docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonalphabet docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok Bio.trie docstring test ... ok Bio.triefind docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 518 tests in 888.122 seconds Skipping any tests requiring internet access Python version: 3.8.2rc2 (default, Feb 18 2020, 10:16:50) [GCC 9.2.1 20200203] Operating system: posix linux mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/<>/python-biopython-1.76+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>/python-biopython-1.76+dfsg' dh_auto_install install -d /<>/python-biopython-1.76\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.8 --dest-dir /<>/python-biopython-1.76\+dfsg/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/python-biopython-1.76+dfsg/debian/tmp running install running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution writing manifest file 'biopython.egg-info/SOURCES.txt' running build_ext running install_lib creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.cache creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.cache/matplotlib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/home/.cache/matplotlib/fontlist-v310.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.cache/matplotlib creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.cache/matplotlib/tex.cache creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee/plugins creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee/plugins/linux creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee/mcoffee creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee/methods creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.t_coffee/cache creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/matplotlib creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/biopython creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/biopython/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/biopython/Bio/Entrez creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_TogoWS.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_EMBL_unittest.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hhsuite2_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_Xdna.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_convert.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output015.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/phlox.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/lavender.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/aster_no_wrap.pro -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/f002 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output006.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/tc_out.msf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output012.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output005.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/wisteria.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output013.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output008.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output016.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output004.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/fa01 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/aster.pro -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/dups.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output009.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/elderberry.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/f001 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output010.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/rosemary.pro -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/sweetpea.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output003.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output001.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/centaurea.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output007.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/rose.pro -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output014.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/loveliesbleeding.pro -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/lupine.nu -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/f003 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output011.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/README -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/output002.m10 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Fasta/flowers.pro.gz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Fasta copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Raf.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/IntelliGenetics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/IntelliGenetics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/labels_default.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/line_graph_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigils.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigils.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/multi_bar.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/line_graph.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/scatter_test_1.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/organism.eps -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_region_circular.svg -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/square_test.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/tRNA_chrom.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/spiral_test.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/random_organism.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_obj_linear.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_labels.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/simple_bar.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_labels.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrows.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map01100_transparency.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrows.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map03070_transparency.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/scatter_test_7.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map01100_widths.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_region_linear.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_region_circular.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_meth_circular.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map03070_colors.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/labels_default.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_region_linear.svg -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_meth_linear.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/organism.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map01100_original.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/README -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigils_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/map03070_original.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/scatter_test.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/labels_default_c.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/organism.svg -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Graphics/GD_by_obj_circular.pdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Graphics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/empty_accession.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/HM138502.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_005816.ffn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/negative_location.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/empty_feature_qualifier.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/KF527485.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_000932.gb.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/protein_refseq2.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/DS830848.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/empty_version.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/pri1.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_005816.faa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/qualifier_escaping_write.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/KF527485_output.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/qualifier_escaping_read.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_005816.tsv -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_000932.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/wrong_sequence_indent.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_000932.faa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/iro.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NT_019265.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/extra_keywords.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/blank_seq.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/bad_loc_wrap.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/noref.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/pBAD30.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/no_origin_no_end.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/EU851978_output.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/gbvrl1_start.seq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/GU949562.1.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/arab1.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/cor6_6.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/origin_line.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_005816.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/dbsource_wrap.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/cor6_6.gb.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/one_of.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/invalid_misc_feature.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NC_005816.fna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/1MRR_A.gp -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/invalid_product.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/NP_416719.gbwithparts -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/bad_origin_wrap.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/tsa_acropora.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/protein_refseq.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/HM138502_output.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/EU851978.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GenBank/no_end_marker.gb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/seq_tests_common.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BWA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BWA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BWA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BWA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_FastaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GenomeDiagram.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_ColorSpiral.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_motifs_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/biosql.ini.appveyor -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_geo.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_FastaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phd copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phd/phd1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phd copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phd/phd_solexa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phd copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phd/phd2 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phd copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phd/phd_454 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phd copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Pathway.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Registry copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Registry/EDD_RAT.dat -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Registry copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Registry/bt001 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Registry copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Registry/seqs.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Registry creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp009 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp010 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/H2CNN8.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/Q13639.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.gff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/uni003 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp016 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/F2CXE6.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/uni001 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp005 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp013 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp004 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp008 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/uni002 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.rdf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp002 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/P84001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/H2CNN8.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp015 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp012 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp011 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/Q13639.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/R5HY77.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/keywlist.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp014 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/keywlist2.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/P97881.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp003 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/README -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/multi_ex.list -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp001 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp007 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/F2CXE6.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SwissProt/sp006 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SwissProt creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NBRF/B_nuc.pir -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NBRF/Cw_prot.pir -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NBRF/clustalw.pir -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NBRF/DMA_nuc.pir -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NBRF/DMB_prot.pir -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NBRF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_phenotype_fit.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_CelFile.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_psw.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_translate.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/test_Nexus_input.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/bats.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/codonposset.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/test.new -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/int_node_labels.nwk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_StructureAlignment.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_PhylipIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/allx.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/hhpred_9590198.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/2uvo_hhblits.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/HHsuite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blast_xml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/out.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/Meta3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/Meta7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/meta9.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/Meta4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/Meta6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/Meta8.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/meta2.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MetaTool/meta.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MetaTool copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_motifs.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/compound.irregular -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/enzyme.sample -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/enzyme.new -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/ko00253.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/enzyme.4letter -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/compound.sample -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/enzyme.irregular -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/map01100.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/gene.sample -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/ko00010.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/map00950.rea -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/ko01100.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/map03070.png -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/KEGG/ko03070.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phylo_networkx.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_sqlite3.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SffIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_features.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Cluster/cyano.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Cluster/README -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cluster creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/4Q9R_min.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2OFG.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.xyzr -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/alignment_file.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/header.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1AS5.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2XHE.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/d256ba_.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.asa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/4CUP.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/Sander_RASA.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1LCD.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/ions.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1SSU_mod.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2n0n_M1.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/4CUP.mmtf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/4ZHL.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/a_structure.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2BEG.dssp -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/Miller_RASA.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2BEG_noheader.dssp -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1LCD.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/a_structure.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1MOM_min.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/lib_10_z_5.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/4ZHL.mmtf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2XHE.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/3JQH.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2BEG.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/dssp_xtra_Sander.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/2BEG.cif -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.rsa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/occupancy.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/Wilke_RASA.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1SSU_mod.pdb -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PDB/1A8O.mmtf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PopGen_GenePop_nodepend.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/phenoscape.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/treebase-record.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/tolweb.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/characters.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/trees-uris.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/nexml.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/edgelabels.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/sets.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/meta_types.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/taxa.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/trees.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/meta_taxa.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeXML/timetree.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_mysql_connector.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Emboss.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PAML_yn00.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Entrez_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/pairwise2_testCases.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_FSSP.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KGML_graphics_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/SmallPlates.csv -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/Plate_2.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/Plate.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/SmallPlate.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/SmallPlate_2.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/BadPlate.json -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/phenotype/Plates.csv -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDBList.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/xx_after_co.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/embl_with_0_line.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/SC10H5.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/DD231055_edited.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/kipo_prt_sample.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/A04195.imgt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/DD231055_edited2.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/DS830848.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/patents.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/hla_3260_sample.imgt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/location_wrap.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/TRBG361.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/101ma_no_coords.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/AAA03323.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/epo_prt_selection.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/AE017046.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/RepBase23.02.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/Human_contigs.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/EMBL/U87107.embl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/EMBL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Enzyme.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_ProtParam.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/paired.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/triple_sff.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/triple_sff_rel_paths.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Roche/greek.sff -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Roche copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_prosite1.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqRecord.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/clusterbuster.pfm.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/REB1.pfm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/SRF.pfm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.crp0.de.oops.txt.html -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/clusterbuster.pfm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme.protein.tcm.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/abdb.xms -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme.protein.oops.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.adh.de.oops.html.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/alignace.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.adh.de.oops.html.html -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.adh.de.oops.html.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/Arnt.sites -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme.rna.oops.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/minimal_test.meme -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme.dna.oops.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.html -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/transfac.dat -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/MA0056.1.transfac -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/motifs/meme_v_4_11_4.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blat_psl_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Cellosaurus/cell_lines_1.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Cellosaurus/cell_lines_3.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Cellosaurus/cell_lines_2.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Cellosaurus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/output.best.nex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastx_004.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastp_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/wnts.xml.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastn_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2222L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastx_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2201L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2202L_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastx_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastn_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2222_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2218L_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_005.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2228_tblastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastx_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_005.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastn_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_phiblast_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_tblastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2228_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_008.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/mirna.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2102L_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastx_004.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastn_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2208L_psiblast_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastn_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_006.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_phiblast_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_012.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_010.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastp_005.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/mirna.tab -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastx_003.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastx_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_006.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_tblastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_tblastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastx_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastn_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_003.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastx_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_006.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2218_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastn_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2212L_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastp_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2212L_blastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_phiblast_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2218_blastp_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastx_003.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/wnts.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2220L_blastx_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastx_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_013.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastn_003.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_tblastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastx_002.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_007.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_phiblast_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastn_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_phiblast_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastx_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastn_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastp_005.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_tblastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2212L_blastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2221L_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2230_blastp_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2222_blastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastp_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2202L_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2220L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastn_005.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_007.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2014L_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastp_003.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastn_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_005.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastp_004.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastn_004.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2014L_psiblast_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2012L_psiblast_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2202L_blastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/html_msgid_29_blastx_001.html -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2215L_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastp_004.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2011L_tblastn_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_009.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_blastp_007.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastx_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_tblastn_004.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2226_blastp_003.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2216L_tblastn_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2010L_phiblast_002.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_006.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/xml_2226_blastx_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/text_2222_blastx_001.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blast/tab_2226_tblastn_011.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/run_tests.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_Superimposer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_KDTree.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/dir.hie.scop.txt_test -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/testDom.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/dir.des.scop.txt_test -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP/scopseq-test copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/raftest.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SCOP/dir.cla.scop.txt_test -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Astral.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/common_BioSQL_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_kNN.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_lowess.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_exonerate_text_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_psycopg2_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniProt/goa_yeast.gaf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KDTree.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_ClustalIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/cds_forward.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/NirK_full.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/needle.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/matcher_simple.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/bac_find.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/alignret.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/short.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/water2.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/internal_oligo.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/cds_reverse.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/bac_find.psearch -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/needle_asis.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/no_oligo.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/NirK.primer3 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/matcher_pair.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Emboss/water.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Emboss creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/CDAO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/CDAO/test.cdao -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/CDAO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blast_tab_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_model.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GraphicsDistribution.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_TreeConstruction.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/nonascii_encoding.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/empty.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/3730.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/fake.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/test.fsa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/test_data -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/no_smpl1.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/3100.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/310.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Abi/A6_1-DB3.ab1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Abi copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Fasttree_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blat_psl.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GenBank.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00159.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00488.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00165.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00432.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00546.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00933.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00113.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00100.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00340.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00787.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00472.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00424.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00144.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00640.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/Doc/pdoc00149.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite/Doc copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Prosite/ps00107.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Prosite copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_EmbossIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_EmbossPrimer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Blast_Record.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PhyloXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_File.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PAML_codeml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Gck copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Gck/artificial.gck -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Gck copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NaiveBayes.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignIO_MauveIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer2_text_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/strict_refs.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/majority_ref.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/pars3.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/trees.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/nj.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/nj_min.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/upgma.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/consensus_refs.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/adam_refs.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/test.log -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/msa.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/TreeConstruction/neighbor_trees.tre -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/TreeConstruction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Tutorial.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Probcons_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_trie.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/biosql.ini.sample -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_MMCIFParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_series.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/GSM700.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_affy_chp.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_platform.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_dual.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_affy.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/GSM804.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/GSE16.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/soft_ex_family.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/GSM645.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Geo/GSM691.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Geo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/big.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/c3line.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/c2line.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/c3space.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/haplo2.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/c2space.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/README -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/haplo3.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PopGen/haplo.gen -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PopGen copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Muscle_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_phyml_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Nexus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_q_multiple.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_q_none.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_ner.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Exonerate copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phylo_NeXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_codonalign.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SVDSuperimposer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_Dice.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_samtools_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqUtils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Residues.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Ace.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Hie.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Ace copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Ace/contig1.ace -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Ace copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Ace/seq.cap.ace -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Ace copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Ace/consed_sample.ace -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Ace copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_AbiIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_in_seq.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/wrapping_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/wrapping_original_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_93.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_in_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_at_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_in_title.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_short_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_rna_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_escape.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_rna_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_double_seq.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_dna_original_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/longreads_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_faked.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/illumina_faked.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/longreads_original_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/longreads_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_at_plus.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_tabs.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_spaces.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_diff_ids.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/wrapping_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_null.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_example.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example_dos.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_no_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_unit_sep.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_dna_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_space.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_rna_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_at_seq.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/longreads_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example.fastq.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/tricky.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example.fastq.gz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_dna_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_dna_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_vtab.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/misc_rna_original_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_tab.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/zero_length.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_trunc_in_plus.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/wrapping_as_sanger.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_long_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_faked.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_qual_del.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example_dos.fastq.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/error_double_qual.fastq -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Quality/example.qual -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Quality copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_write.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Clustalw_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/output.best.fas -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KGML_graphics.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_CAPS.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/tmpdirprankmsasy2eB1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_write.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_UniGene.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Cla.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GFF/NC_001422.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GFF/multi.fna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GFF/NC_001802lc.fna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GFF/NC_001802x.fna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/GFF/NC_001802.fna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/GFF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_prodoc.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_ClustalOmega_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_tab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeuralNetwork/enolase.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NeuralNetwork/repeat.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NeuralNetwork copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_AlignInfo.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_vectors.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Dom.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_sqlite3_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_DSSP_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Wise/human_114_g02_exons.fna_01 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Wise/human_114_g01_exons.fna_01 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_fasta_m10_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_legacy.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/phyloxml_examples.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/example.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/bcl_2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/distribution.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/made_up.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PhyloXML/apaf.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PhyloXML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/CodonUsage copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/CodonUsage creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_even.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_odd_bigendian.nib -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_even_littleendian.nib -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_odd_littleendian.nib -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_odd.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Nib/test_even_bigendian.nib -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Nib copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_MafIO_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_HMMGeneral.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_exonerate.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_Gck.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_Polypetide.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SubsMat.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/msf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/msf/DOA_prot.msf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/msf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/msf/W_prot.msf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/msf creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Chi2.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_lowess.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PAML_baseml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Clustalw_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Mafft_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_kNN.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phd.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Uniprot.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Fasttree_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_convert.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Consensus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PAML_yn00.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Restriction.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_samtools_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Tutorial.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Raf.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/common_BioSQL.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_DSSP_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SVDSuperimposer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Entrez_parser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Dom.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_KDTree.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_write.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Emboss.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_HMMCasino.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_HMMGeneral.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_Gck.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NMR.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_phenotype_fit.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_QCPSuperimposer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Cluster.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Wise.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Prank_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/requires_wise.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_legacy.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SwissProt.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phylo_networkx.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KEGG.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NaiveBayes.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_pairwise2_no_C.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_write.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Blast_Record.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_vectors.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PAML_codeml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Enzyme.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_pairwise2.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_prosite1.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_cellosaurus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NCBIXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GraphicsChromosome.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_phyml_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_geo.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_ColorSpiral.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Compass.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_UniProt_GOA.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Dialign_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_UniGene.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_align_substitution_matrices.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqFeature.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_pairwise_aligner.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_Superimposer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/requires_internet.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_CelFile.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_LogisticRegression.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phylo_CDAO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/common_BioSQL_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NCBITextParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Seq_objs.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_motifs_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_TreeConstruction.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_trie.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Ace.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BWA_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_TCoffee_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/pairwise2_testCases.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phylo.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_prodoc.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Cla.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqRecord.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_bgzf.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GraphicsGeneral.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GenBank.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_Dice.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignInfo.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KDTree.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_translate.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Residues.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Probcons_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_CAPS.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_codonalign.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_RCSBFormats.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Crystal.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_FSSP.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Pathway.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_NCBI_qblast.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_ProtParam.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SffIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_CodonTable.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GenomeDiagram.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KGML_graphics_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDBList.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/seq_tests_common.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Application.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Entrez.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KGML_nographics.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_File.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Scop.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_Polypetide.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Affy.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_MarkovModel.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Medline.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_EMBL_unittest.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PhyloXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_EmbossPrimer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_model.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KGML_graphics.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phylo_NeXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_seq.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_GraphicsDistribution.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_psw.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/search_tests_common.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_TogoWS.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_features.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_motifs.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SubsMat.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Nexus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_align.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_prosite2.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_ExPASy.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Hie.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_MafIO_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Des.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KeyWList.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Entrez_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_Muscle_tool.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqUtils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_phenotype.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SeqIO_convert.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_KEGG_online.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/__pycache__/test_SCOP_Astral.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Prank_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NMR.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_seq.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/invalid.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/cnksr3.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/corrupt.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/wrong_version.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/bundle_without_target.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/unfinished.idx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_test.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/length_coords_mismatch.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/humor.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/bug2453.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/MAF copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_QualityIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_PdbIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Chi2.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_align.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBIXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Mafft_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_MarkovModel.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_pairwise_aligner.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniGene/Eca.1.2425.data -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniGene/Mdm_partial.data -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/UniGene/Hs.2.data -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/UniGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Affy.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Compass copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Compass/comtest2 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Compass copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Compass/comtest1 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Compass copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Des.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blast_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KEGG.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Enzymes/lipoprotein.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Enzymes/proline.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Enzymes/valine.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Enzymes/lactate.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Enzymes copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_TCoffee_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBI_qblast.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_fasta_m10.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_NibIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SnapGene/sample-e.dna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SnapGene/sample-d.dna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SnapGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_ExPASy.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_prosite2.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_cellosaurus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Crystal.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phylo_CDAO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_FragmentMapper.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_MySQLdb_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/requires_internet.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/pro1.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/egfr_nucl.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/nucl3.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/drosophilla.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/nucl5.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/egfr_id -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/nucl4.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/pro2.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/adh.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/pro5.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/pro4.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/egfr_pro.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/nucl1.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/pro3.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/codonalign/nucl2.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/codonalign creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Trees/lysin.trees -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Trees/lysin.trees.4.6 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Trees/bad.tree -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Trees copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Trees/species.tree -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Trees creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/bad_results.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nhomo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/versions copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/baseml_SE.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/model creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/SE creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/baseml/nparK creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/yn00 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/pairwise creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/freeratio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/SE creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/dottednum.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/aa_alignment.phylip -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/alignment.phylip -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/longnames.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Alignments/dottednames.phylip -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Alignments copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/gen_results.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model8.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model4.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/SE.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model3.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model5.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model7.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model6.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model0.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml/model2.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/bad3.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00 copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00 creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/SE.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/yn00.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/baseml.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/bad1.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/species.tree -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/PAML/Control_files/bad2.ctl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/Control_files creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_35_002.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_34_004.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_34_003.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_34_002.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/mirna.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_34_001.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_34_004.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_34_005.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_34_001.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_35_002.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_35_001.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_34_005.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/pslx_34_002.pslx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Blat/psl_34_003.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Blat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_RCSBFormats.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_phenotype.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/tmpdirprankmsaB2Tpfa creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/ExtendedPhylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/ExtendedPhylip/primates.phyx -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/ExtendedPhylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer2_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KeyWList.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/dna_example.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/rna_example.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/corrupt_example1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/protein_example.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/global_species_example.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SeqXML/corrupt_example2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SeqXML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/InterProScan/test_001.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/InterProScan copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_Insdc.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GraphicsBitmaps.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Compass.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_pairwise2_no_C.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_SnapGene.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GraphicsGeneral.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Restriction.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/bam2_sorted.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/sam1.sam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/readme.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1_refresh.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/sam2.sam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/bam2.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/bam1_sorted.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/bam1.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1.sam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1_header.sam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SamBam/ex1_header.bam -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SamBam copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PAML_baseml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Stockholm/funny.sth -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Stockholm/simple.sth -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Stockholm copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_domtab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_HMMCasino.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_MMCIF2Dict.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Application.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BWA_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/search_tests_common.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Medline.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_align_substitution_matrices.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_007.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/README.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_003.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_006.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_004.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_005.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_008.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_009.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmscan_010.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Hmmer creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/FSSP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/FSSP/1cnv.fssp -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/FSSP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_UniProt_GOA.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/protein_freq.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/protein_count.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/redAADistrib.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/acc_rep_mat.pik -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/aaDistrib.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/SubsMat/redAltAADistrib.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_SeqXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SwissProt.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Seq_objs.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink6.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/einfo1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary6.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/journals.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink5.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/taxonomy.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch8.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/nucleotide2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed5.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/nucleotide1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch7.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed4.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/ncbi_mim.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/einfo3.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/einfo2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink7.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink8.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink3.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary7.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed7.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/epost2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary9.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink4.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/epost3.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch4.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed3.html -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/egquery1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary8.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/elink2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/efetch_schemas.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/epost1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch6.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/espell.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed1.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed6.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/protein.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary5.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch3.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary4.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/pubmed2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/egquery2.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esearch5.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/esummary3.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Entrez/einfo4.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Entrez_parser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KGML_nographics.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_GraphicsChromosome.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/requires_wise.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Consensus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/sequential2.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/hennigian.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/reference_dna2.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/horses.tree -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/horses.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/interlaced.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/reference_dna.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/interlaced2.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/sequential.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Phylip/random.phy -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Phylip copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_bgzf.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Medline copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Medline/pubmed_result1.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Medline copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Medline/pubmed_result2.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Medline copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Medline/pubmed_result3.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Medline creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/pvuii.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/crei.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/bamii.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/cac81.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/taqi.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/foki.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/pvuii.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/taqi.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/crei.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/bamii.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/foki.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Rebase/cac81.htm -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Rebase copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_KEGG_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_convert.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Mauve/simple_short.xmfa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Mauve/simple.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Mauve/simple.xmfa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Mauve/simple.xmfa.bbcols -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Mauve/simple.xmfa.backbone -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Mauve copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_BioSQL_mysql_connector_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/hedgehog.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/protein.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/promals3d.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/odd_consensus.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/opuntia.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/temp horses.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Clustalw/cw02.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Clustalw copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Wise.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Saf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Saf/saf1.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Saf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_QCPSuperimposer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/hg38.chrom.sizes -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/bsubtilis.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/pig.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/bsubtilis.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/ecoli.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/cow.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/pig.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/ecoli.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Align/cow.fa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SCOP_Scop.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_LogisticRegression.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Affy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Affy/affy_v3_example.CEL -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Affy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Affy/affy_v4_example.CEL -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Affy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BioSQL/biosqldb-pg.sql -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BioSQL/biosqldb-mysql.sql -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BioSQL/biosqldb-sqlite.sql -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/BioSQL/cor6_6.db -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Entrez.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phylo_matplotlib.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blast_tab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NMR/out_example.xpk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/NMR/noed.xpk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_pairwise2.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phylo.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_NCBITextParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/common_BioSQL.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Dialign_tool.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Phd.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/.coveragerc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_blast_xml_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_interproscan_xml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_PDB_parse_pdb_header.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqIO_online.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_CodonTable.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Cluster.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_Uniprot.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Xdna copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Xdna/sample-b.xdna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Xdna copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Xdna/sample-a.xdna -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Xdna copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/Xdna/sample-c.xprt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/Xdna copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SeqFeature.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Tests/test_SearchIO_hmmer3_text_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/fasta_iterator.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ls_orchid.gbk.gz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/my_blat.psl -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/opuntia.dnd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ACT_example.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/alpha.faa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/swissprot.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ls_orchid.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/protein.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/www_blast.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/m_cold.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/opuntia.fasta -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/fasta_dictionary.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ls_orchid.gbk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/beta.faa -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/simple.dnd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/getgene.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ls_orchid.gbk.bz2 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ec_5.4.2.2.txt -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/clustal_run.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/my_blast.xml -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/PF05371_seed.sth -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/opuntia.aln -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/Plates.csv -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/make_subsmat.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/ls_orchid.gbk.bgz -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/nmr/simplepredict.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/nmr copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/examples/nmr/noed.xpk -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/nmr creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_popgen.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_cluster.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_contributing.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_phylo.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_introduction.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_cookbook.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seq_objects.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_testing.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_cookbook.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_pdb.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_pdb.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_quick_start.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_graphics.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_introduction.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_appendix.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seq_objects.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_advanced.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_blast.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_kegg.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seq_annot.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seqio.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_phylo.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_align.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_popgen.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seqio.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_motifs.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_cluster.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_phenotype.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_entrez.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_seq_annot.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_entrez.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_appendix.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_uniprot.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_advanced.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_uniprot.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_searchio.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_searchio.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_kegg.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_phenotype.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_testing.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_quick_start.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_blast.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_motifs.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_learning.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_align.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_contributing.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_learning.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial/chapter_graphics.aux -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/Tutorial copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Doc/Tutorial.tex -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Newick.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Consensus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/CDAOIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PhyloXMLIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/NexusIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/_Phyml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/_Raxml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/_Fasttree.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/NeXMLIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/CDAO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/_utils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/_io.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/Consensus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/CDAOIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/_utils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/NexusIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/NewickIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/BaseTree.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/CDAO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/Newick.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/NeXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/__pycache__/PhyloXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/BaseTree.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/_io.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/_cdao_owl.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/codeml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/_parse_codeml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/yn00.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/chi2.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/_paml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/_parse_baseml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/_parse_yn00.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PAML/baseml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/PhyloXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/TreeConstruction.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/NeXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Phylo/NewickIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/GenomeDiagram/_Track.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/KGML_vis.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/Comparative.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/DisplayRepresentation.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/Comparative.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/KGML_vis.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/Distribution.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/ColorSpiral.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/Distribution.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Graphics/BasicChromosome.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/utils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/Scanner.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/Record.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/__pycache__/Record.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/__pycache__/Scanner.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/GenBank/__pycache__/utils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/bgzf.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt/__pycache__/KeyWList.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SwissProt/KeyWList.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/kNN.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/Nexus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/Trees.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/cnexus.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/Nodes.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/StandardData.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__pycache__/Nexus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__pycache__/Trees.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__pycache__/Nodes.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Nexus/__pycache__/StandardData.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/TogoWS copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/TogoWS/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/TogoWS creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/TogoWS/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/TogoWS/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/TogoWS/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Gene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Gene/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Gene creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Gene/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/REST.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Compound copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Compound/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Compound creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Compound/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Compound/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Map copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Map/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Map creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Map/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Map/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Map/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/__pycache__/REST.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/KGML_parser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/KGML_pathway.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Enzyme copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Enzyme/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Enzyme creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Enzyme/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/cluster.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/cluster.h -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Cluster/clustermodule.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Chain.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/PDBExceptions.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/PDBList.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/vectors.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Model.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Polypeptide.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/StructureBuilder.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/NACCESS.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/FragmentMapper.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/MMCIF2Dict.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/DSSP.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Superimposer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/MMCIFParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/PSEA.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/parse_pdb_header.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/AbstractPropertyMap.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Structure.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/kdtrees.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/PDBParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/NeighborSearch.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/PDBIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Selection.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/ResidueDepth.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Residue.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/PDBList.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/DSSP.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Chain.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/vectors.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/NeighborSearch.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/HSExposure.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Selection.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Polypeptide.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Model.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/ResidueDepth.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/StructureBuilder.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/MMCIFParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Entity.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/PDBIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/StructureAlignment.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Superimposer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Dice.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Atom.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/PDBExceptions.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/mmcifio.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/FragmentMapper.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/PDBParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Residue.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/PSEA.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/NACCESS.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/__pycache__/Structure.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmcifio.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Atom.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Dice.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf/mmtfio.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/mmtf/DefaultParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/Entity.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/HSExposure.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PDB/StructureAlignment.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_py3k copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/_py3k/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_py3k creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_py3k/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/_py3k/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_py3k/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NaiveBayes.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/phen_micro.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/pm_fitting.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/__pycache__/phen_micro.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/phenotype/__pycache__/pm_fitting.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/trie.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/triemodule.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/xms.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/matrix.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/_pwm.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/meme.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/clusterbuster.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/transfac.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications/_xxmotif.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/minimal.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/thresholds.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/meme.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/alignace.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/clusterbuster.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/transfac.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/matrix.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/mast.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/xms.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/minimal.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/__pycache__/pfm.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar/db.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/jaspar/__pycache__/db.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/pfm.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/thresholds.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/mast.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/motifs/alignace.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/ScanProsite.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/Prosite.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/Enzyme.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/cellosaurus.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/Enzyme.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/Prosite.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/__pycache__/Prodoc.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/ExPASy/Prodoc.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/Applications.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/NCBIWWW.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/ParseBlastTable.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/Record.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/Applications.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/Record.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/NCBIWWW.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/__pycache__/NCBIXML.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Blast/NCBIXML.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/CAPS copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/CAPS/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/CAPS creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/CAPS/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/CAPS/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/CAPS/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/ClustalIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/NexusIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/MafIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/PhylipIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/StockholmIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/MauveIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/MafIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/MsfIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/MauveIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/NexusIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/Interfaces.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/__pycache__/FastaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/Interfaces.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/EmbossIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/AlignIO/MsfIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Hie.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Residues.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Cla.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Cla.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Des.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Hie.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Residues.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Dom.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/__pycache__/Raf.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Dom.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Des.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SCOP/Raf.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/trie.h -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt/__pycache__/GOA.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniProt/GOA.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/Primer3.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/Applications.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/__pycache__/Applications.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/__pycache__/Primer3.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Emboss/PrimerSearch.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/MarkovModel.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/Graph.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/MultiGraph.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Pathway/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo/Record.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo/__pycache__/Record.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Geo/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/Controller.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/FileParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/LargeFileParser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/Utils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/Utils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/GenePop/EasyController.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/PopGen/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics/__pycache__/lowess.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Statistics/lowess.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SVDSuperimposer copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SVDSuperimposer/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SVDSuperimposer creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SVDSuperimposer/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/Restriction_Dictionary.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/Restriction.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/PrintFormat.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/__pycache__/PrintFormat.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/__pycache__/Restriction.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/lcc.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/ProtParamData.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/CodonUsage.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/lcc.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/MeltingTemp.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/ProtParam.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/IsoelectricPoint.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/CodonUsageIndices.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqUtils/CheckSum.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/IUPAC.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/__pycache__/Reduced.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/__pycache__/IUPAC.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Alphabet/Reduced.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/File.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqFeature.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Crystal copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Crystal/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Crystal creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Crystal/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Crystal/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Crystal/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/MarkovModel.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/DynamicProgramming.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/Utilities.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__pycache__/Utilities.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__pycache__/Trainer.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/__pycache__/MarkovModel.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/HMM/Trainer.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/pairwise2.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/__pycache__/psw.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/__pycache__/dnal.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/psw.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Wise/dnal.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/_utils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/Index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/NaiveBayes.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/pairwise2.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/_utils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/SeqRecord.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/File.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/LogisticRegression.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/bgzf.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/triefind.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/Seq.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/kNN.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/MaxEntropy.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/SeqFeature.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/__pycache__/MarkovModel.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Application copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Application/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Application creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Application/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Application/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Application/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniGene copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniGene/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniGene creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/UniGene/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniGene/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/MaxEntropy.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/triefind.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Compass copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Compass/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Compass creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Compass/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Compass/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/LogisticRegression.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/codonseq.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/codonalignment.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/codonalphabet.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__pycache__/codonalphabet.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__pycache__/chisq.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__pycache__/codonseq.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/__pycache__/codonalignment.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/codonalign/chisq.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/IUPACData.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/CodonTable.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/SCOPData.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/__pycache__/SCOPData.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/__pycache__/IUPACData.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Data/__pycache__/CodonTable.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqRecord.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/cpairwise2module.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/FSSPTools.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/fssp_rec.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/__pycache__/fssp_rec.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/FSSP/__pycache__/FSSPTools.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/FreqTable.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/MatrixInfo.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/__pycache__/MatrixInfo.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SubsMat/__pycache__/FreqTable.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/__pycache__/Parser.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/XSDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/XSDs creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/phrase.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/journalmeta.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/default-classes.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/link.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isopub.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PRF_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eSpell.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pmc-1.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NSE.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/archivearticle.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/display.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamso.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/esearch.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/taxon.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PIR_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/articlemeta.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/SP_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isogrk4.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isomscr.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isonum.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/para.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamsn.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mathml2.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isogrk2.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isogrk3.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mmlextra.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isocyr1.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isomfrk.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isolat2.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/egquery.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/format.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isotech.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/common.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamsr.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/OMSSA.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/list.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/PDB_General.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isogrk1.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/modules.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/elink_020122.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/math.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isodia.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamsa.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/references.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mmlalias.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/htmltable.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/einfo.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/mathml3.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isolat1.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/default-mixes.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/backmatter.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isobox.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamsb.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isocyr2.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/MMDB.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/section.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/chars.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/notat.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isoamsc.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/isomopf.ent -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/DTDs copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Entrez/Parser.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Seq.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Medline copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Medline/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Medline creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Medline/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Medline/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Medline/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Phd.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Ace.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/_bwa.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/_Novoalign.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/_samtools.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/__pycache__/Phd.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Sequencing/__pycache__/Ace.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/_aligners.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Prank.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Probcons.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Clustalw.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_TCoffee.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Mafft.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_ClustalOmega.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Prank.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Dialign.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_MSAProbs.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/Applications/_Muscle.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/__pycache__/AlignInfo.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/AlignInfo.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/GENETIC -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/JONES -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/MDM78 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BENNER22 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/STR -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BENNER74 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BENNER6 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/PAM30 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/LEVIN -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/JOHNSON -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/RISLER -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/PAM70 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/RAO -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/FENG -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/PAM250 -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/data copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy/__pycache__/CelFile.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/Affy/CelFile.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/SwissIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/NibIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/AceIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/GckIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/AbiIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/SffIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/PhdIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/UniprotIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/QualityIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/PdbIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/PirIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/SeqXmlIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/XdnaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/TabIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/_convert.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/NibIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/AceIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/PdbIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/IgIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/Interfaces.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/GckIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/PhdIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/QualityIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/SffIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/_convert.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/AbiIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/PirIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/SwissIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/TabIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/__pycache__/FastaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/Interfaces.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/SnapGeneIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/InsdcIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SeqIO/IgIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/trie.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/Neighbor.h -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/__pycache__/KDTree.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/KDTree.h -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/KDTree.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/KDTree.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/KDTree/KDTreemodule.c -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/blast_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/blast_tab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/blast_xml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/ParserSupport.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/BlatIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/FastaIO.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/_base.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_utils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__pycache__/_utils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__pycache__/BlatIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__pycache__/_index.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/__pycache__/FastaIO.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/_base.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_index.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/_base.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__pycache__/query.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__pycache__/_base.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/__pycache__/hit.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/query.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/hsp.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/_model/hit.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/NOEtools.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/xpktools.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/__pycache__/NOEtools.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/Bio/NMR/__pycache__/xpktools.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/__pycache__ creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/DBUtils.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__init__.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/BioSeqDatabase.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL creating /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__pycache__/__init__.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__pycache__/DBUtils.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__pycache__/Loader.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__pycache__/BioSeqDatabase.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/__pycache__/BioSeq.cpython-38.pyc -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__pycache__ copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/Loader.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL copying /<>/python-biopython-1.76+dfsg/.pybuild/cpython3_3.8/build/BioSQL/BioSeq.py -> /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_geo.py to test_geo.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_CelFile.py to test_CelFile.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_psw.py to test_psw.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_translate.py to test_translate.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_motifs.py to test_motifs.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_FSSP.py to test_FSSP.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_prosite1.py to test_prosite1.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/run_tests.py to run_tests.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_kNN.py to test_kNN.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_lowess.py to test_lowess.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KDTree.py to test_KDTree.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB.py to test_PDB.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_File.py to test_File.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_trie.py to test_trie.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Ace.py to test_Ace.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_DSSP_tool.py to test_DSSP_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_Polypetide.py to test_PDB_Polypetide.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SubsMat.py to test_SubsMat.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NMR.py to test_NMR.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_seq.py to test_seq.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_align.py to test_align.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Affy.py to test_Affy.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_prosite2.py to test_prosite2.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Crystal.py to test_Crystal.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/requires_internet.py to requires_internet.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Compass.py to test_Compass.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Application.py to test_Application.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Medline.py to test_Medline.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/requires_wise.py to requires_wise.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_convert.py to test_SeqIO_convert.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Wise.py to test_Wise.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_QCPSuperimposer.py to test_QCPSuperimposer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Phd.py to test_Phd.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/getgene.py to getgene.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/make_subsmat.py to make_subsmat.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Index.py to Index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/_io.py to _io.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/utils.py to utils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/GenBank/Record.py to Record.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/bgzf.py to bgzf.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/kNN.py to kNN.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/REST.py to REST.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Chain.py to Chain.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/vectors.py to vectors.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Model.py to Model.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Structure.py to Structure.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Selection.py to Selection.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Residue.py to Residue.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Atom.py to Atom.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Dice.py to Dice.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/Entity.py to Entity.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_py3k/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/xms.py to xms.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/matrix.py to matrix.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/meme.py to meme.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/transfac.py to transfac.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/minimal.py to minimal.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/pfm.py to pfm.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/mast.py to mast.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/motifs/alignace.py to alignace.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/Applications.py to Applications.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/Record.py to Record.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Des.py to Des.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Geo/Record.py to Record.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Statistics/lowess.py to lowess.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Alphabet/Reduced.py to Reduced.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/File.py to File.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Crystal/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/pairwise2.py to pairwise2.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/psw.py to psw.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Wise/dnal.py to dnal.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/_utils.py to _utils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Application/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/triefind.py to triefind.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Compass/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/codonalphabet.py to codonalphabet.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/codonalign/chisq.py to chisq.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/FSSP/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Seq.py to Seq.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Medline/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/_convert.py to _convert.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/_index.py to _index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/KDTree/KDTree.py to KDTree.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_index.py to _index.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/Loader.py to Loader.cpython-38.pyc byte-compiling /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-38.pyc running install_egg_info Copying biopython.egg-info to /<>/python-biopython-1.76+dfsg/debian/tmp/usr/lib/python3.8/dist-packages/biopython-1.76.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython (grep -a -s -v python3:Depends debian/python3-biopython.substvars; echo "python3:Depends=python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9") > debian/python3-biopython.substvars.new mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/<>/python-biopython-1.76+dfsg' dh_install -a -O--buildsystem=pybuild install -d debian/python3-biopython//usr/lib/python3.8/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.8/dist-packages/Bio debian/tmp/usr/lib/python3.8/dist-packages/biopython-1.76.egg-info debian/python3-biopython//usr/lib/python3.8/dist-packages/ install -d debian/.debhelper/generated/python3-biopython install -d debian/.debhelper/generated/python-biopython-doc install -d debian/.debhelper/generated/python3-biopython-sql dh_installdocs -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chown -R 0:0 debian/python3-biopython/usr/share/doc chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20191017ubuntu5 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': True, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8 (default=3.8) D: dh_python3 debhelper:107: skipping package: python-biopython-doc D: dh_python3 debhelper:152: source=python-biopython, binary packages=['python3-biopython'] D: dh_python3 dh_python3:183: processing package python3-biopython... D: dh_python3 fs:49: moving files from debian/python3-biopython/usr/lib/python3.8/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.8 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.76.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.8')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:137: trying to find dependency for numpy (python=None) D: dh_python3 depends:275: D={'python3 (<< 3.9)', 'python3-numpy', 'python3:any', 'python3 (>= 3.8~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/schema/w3c/mathml/dtd/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild cd debian/python3-biopython chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/CONTRIBUTING.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/<>/python-biopython-1.76+dfsg' rm -f debian/python3-biopython.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/<>/python-biopython-1.76+dfsg' dh_fixperms find debian/python3-biopython -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/<>/python-biopython-1.76+dfsg' dh_missing -a -O--buildsystem=pybuild dh_missing: warning: usr/lib/python3.8/dist-packages/home/.cache/matplotlib/fontlist-v310.json exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_TogoWS.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_EMBL_unittest.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hhsuite2_text.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SeqIO_Xdna.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_AlignIO_convert.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SCOP_Raf.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/seq_tests_common.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SeqIO_FastaIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_text.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_GenomeDiagram.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_ColorSpiral.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_motifs_online.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/biosql.ini.appveyor exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_geo.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_AlignIO_FastaIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_Pathway.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_phenotype_fit.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_CelFile.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_psw.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_translate.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_PDB_StructureAlignment.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_AlignIO_PhylipIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SearchIO_blast_xml.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/out.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_motifs.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_Phylo_networkx.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_BioSQL_sqlite3.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SffIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SeqIO_features.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_SeqIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_PopGen_GenePop_nodepend.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_BioSQL_mysql_connector.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_AlignIO.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_Emboss.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_PAML_yn00.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_Entrez_online.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/pairwise2_testCases.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_FSSP.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/test_KGML_graphics_online.py 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but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/output008.m10 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/output016.m10 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/output004.m10 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/fa01 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/aster.pro exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/dups.fasta exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/output009.m10 exists in debian/tmp but is not installed to anywhere dh_missing: warning: 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usr/lib/python3.8/dist-packages/Tests/Fasta/README exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/output002.m10 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Fasta/flowers.pro.gz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/IntelliGenetics/VIF_mase-pro.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/IntelliGenetics/vpu_nucaligned.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/IntelliGenetics/TAT_mase_nuc.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/labels_default.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: 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is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_OCTO.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_ARROW_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_by_obj_linear.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_labels.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/simple_bar.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_BIGARROW.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_labels.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_arrows.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map01100_transparency.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_arrows.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_OCTO.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map03070_transparency.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_JAGGY.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/scatter_test_7.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map01100_widths.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_ARROW.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_region_linear.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_JAGGY.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_region_circular.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_labels_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_arrows_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_by_meth_circular.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_by_obj_frag_circular.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_arrow_shafts.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map03070_colors.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/labels_default.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_ARROW.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_region_linear.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_by_meth_linear.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/organism.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map01100_original.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/README exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_short_JAGGY.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigils_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/map03070_original.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_sigil_long_JAGGY.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/scatter_test.png exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/labels_default_c.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/organism.svg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Graphics/GD_by_obj_circular.pdf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/empty_accession.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/HM138502.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/bad_origin_wrap_fuzzy.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_005816.ffn exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/negative_location.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/empty_feature_qualifier.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/bad_origin_wrap_CDS.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/KF527485.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_000932.gb.bgz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/protein_refseq2.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/DS830848.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/empty_version.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/pri1.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_005816.faa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/qualifier_escaping_write.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/KF527485_output.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/qualifier_escaping_read.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/bad_origin_wrap_linear.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_005816.tsv exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_000932.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/wrong_sequence_indent.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_000932.faa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/iro.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NT_019265.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/extra_keywords.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/blank_seq.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/bad_loc_wrap.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/noref.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/pBAD30.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/no_origin_no_end.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/EU851978_output.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/gbvrl1_start.seq exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/GU949562.1.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/arab1.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/cor6_6.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/origin_line.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_005816.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/dbsource_wrap.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/cor6_6.gb.bgz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/one_of.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/invalid_misc_feature.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NC_005816.fna exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/1MRR_A.gp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/invalid_product.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/NP_416719.gbwithparts exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/bad_origin_wrap.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/tsa_acropora.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/protein_refseq.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/HM138502_output.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/invalid_locus_line_spacing.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/EU851978.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/GenBank/no_end_marker.gb exists in debian/tmp but is not installed to anywhere dh_missing: warning: 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installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/nparK4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model1.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model8.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/nparK3.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model4.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/SE.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: 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but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model6.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/nhomo1.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/nhomo3.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model0.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/baseml.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/baseml/model2.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00/yn00_dotted.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00/yn00_long.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/yn00/yn00.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/pairwise.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/m2a_rel.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/branchsiteA.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/codeml.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/SE.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/aa_pairwise.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/clademodelC.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/aa_model0.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/NSsite3.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/freeratio.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/PAML/Control_files/codeml/all_NSsites.ctl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_35_002.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_34_004.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_34_003.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_34_002.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/mirna.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_34_001.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/README.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_34_004.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_34_005.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_34_001.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_35_002.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_35_001.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_34_005.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/pslx_34_002.pslx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Blat/psl_34_003.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/ExtendedPhylip/primates.phyx exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/dna_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/rna_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/corrupt_example1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/protein_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/global_species_example.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SeqXML/corrupt_example2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/InterProScan/test_001.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/bam2_sorted.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/sam1.sam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/readme.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1_refresh.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/sam2.sam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/bam2.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/bam1_sorted.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/bam1.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1.sam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1_header.sam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SamBam/ex1_header.bam exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Stockholm/funny.sth exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Stockholm/simple.sth exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_007.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_22_hmmpfam_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_30_hmmscan_003.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_30_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b2_phmmer_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_31b1_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_21_hmmpfam_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/README.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_31b1_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b1_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_23_hmmpfam_003.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_003.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmsearch_005.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmsearch_003.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_006.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b2_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_30_hmmscan_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_30_hmmscan_004.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_24_hmmpfam_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_004.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmsearch_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_30_hmmscan_003.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_005.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_23_hmmpfam_004.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b2_hmmsearch_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_23_hmmpfam_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_30_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_008.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b2_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_30_hmmscan_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_31b1_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_31b1_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_20_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/tab_30_hmmscan_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_22_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_009.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_31b1_hmmsearch_001.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/domtab_30_hmmscan_004.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_23_hmmpfam_002.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmscan_010.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Hmmer/text_30_hmmsearch_004.out exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/FSSP/1cnv.fssp exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/protein_freq.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/protein_count.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/redAADistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/acc_rep_mat.pik exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/aaDistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/SubsMat/redAltAADistrib.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink6.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/einfo1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary6.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/journals.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink5.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/taxonomy.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch8.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/nucleotide2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed5.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/nucleotide1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch7.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed4.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/ncbi_mim.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/einfo3.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/einfo2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink7.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink8.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink3.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary7.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed7.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/epost2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary9.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink4.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/epost3.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch4.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed3.html exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/egquery1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary8.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/elink2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/efetch_schemas.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/epost1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch6.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/espell.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed1.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed6.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/protein.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary5.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch3.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary4.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/pubmed2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/egquery2.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esearch5.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/esummary3.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Entrez/einfo4.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/sequential2.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/hennigian.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/reference_dna2.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/horses.tree exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/horses.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/interlaced.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/reference_dna.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/interlaced2.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/sequential.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Phylip/random.phy exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Medline/pubmed_result1.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Medline/pubmed_result2.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Medline/pubmed_result3.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/pvuii.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/crei.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/bamii.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/cac81.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/taqi.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/foki.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/pvuii.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/taqi.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/crei.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/bamii.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/foki.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Rebase/cac81.htm exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Mauve/simple_short.xmfa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Mauve/simple.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Mauve/simple.xmfa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Mauve/simple.xmfa.bbcols exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Mauve/simple.xmfa.backbone exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/hedgehog.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/protein.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/promals3d.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/odd_consensus.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/opuntia.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/temp horses.fasta exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Clustalw/cw02.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Saf/saf1.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/hg38.chrom.sizes exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/bsubtilis.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/pig.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/bsubtilis.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/ecoli.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/cow.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/pig.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/ecoli.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Align/cow.fa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Affy/affy_v3_example.CEL exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Affy/affy_v4_example.CEL exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/BioSQL/biosqldb-pg.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/BioSQL/biosqldb-mysql.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/BioSQL/biosqldb-sqlite.sql exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/BioSQL/cor6_6.db exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/NMR/out_example.xpk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/NMR/noed.xpk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Xdna/sample-b.xdna exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Xdna/sample-a.xdna exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Tests/Xdna/sample-c.xprt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/fasta_iterator.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ls_orchid.gbk.gz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/my_blat.psl exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/opuntia.dnd exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ACT_example.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/alpha.faa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/swissprot.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ls_orchid.fasta exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/protein.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/www_blast.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/m_cold.fasta exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/opuntia.fasta exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/fasta_dictionary.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ls_orchid.gbk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/beta.faa exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/simple.dnd exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/getgene.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ls_orchid.gbk.bz2 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ec_5.4.2.2.txt exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/clustal_run.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/my_blast.xml exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/PF05371_seed.sth exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/opuntia.aln exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/Plates.csv exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/make_subsmat.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/ls_orchid.gbk.bgz exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/getgene.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/ACT_example.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/www_blast.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/swissprot.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/clustal_run.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/make_subsmat.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/Proux_et_al_2002_Figure_6.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/fasta_dictionary.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/__pycache__/fasta_iterator.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/nmr/simplepredict.py exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/nmr/noed.xpk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/examples/nmr/__pycache__/simplepredict.cpython-38.pyc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_popgen.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_cluster.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_contributing.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_phylo.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_introduction.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_cookbook.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seq_objects.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_testing.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_cookbook.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_pdb.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_pdb.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_quick_start.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_graphics.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_introduction.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_appendix.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seq_objects.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_advanced.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_blast.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_kegg.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seq_annot.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seqio.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_phylo.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_align.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_popgen.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seqio.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_motifs.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_cluster.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_phenotype.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_entrez.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_seq_annot.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_entrez.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_appendix.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_uniprot.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_advanced.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_uniprot.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_searchio.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_searchio.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_kegg.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_phenotype.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_testing.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_quick_start.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_blast.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_motifs.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_learning.aux exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_align.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_contributing.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_learning.tex exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/python3.8/dist-packages/Doc/Tutorial/chapter_graphics.aux exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: python-biopython-doc (0), python3-biopython (2), python3-biopython-sql (1) * dh_installdocs: python-biopython-doc (4), python3-biopython (4), python3-biopython-sql (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -a -O--buildsystem=pybuild install -d debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-38-arm-linux-gnueabihf.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/a1a73bcda7ef5e493af950f064799f40f5951c.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/a1a73bcda7ef5e493af950f064799f40f5951c.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/a1a73bcda7ef5e493af950f064799f40f5951c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/a1a73bcda7ef5e493af950f064799f40f5951c.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0a/28b5548ec4a631f342bc3bb19cc695e5789be1.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0a/28b5548ec4a631f342bc3bb19cc695e5789be1.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0a/28b5548ec4a631f342bc3bb19cc695e5789be1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0a/28b5548ec4a631f342bc3bb19cc695e5789be1.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/d1ba690f7c466ea156275ad1e019dffef1feba.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/d1ba690f7c466ea156275ad1e019dffef1feba.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/d1ba690f7c466ea156275ad1e019dffef1feba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/75/d1ba690f7c466ea156275ad1e019dffef1feba.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/6ec58522ee8e202a3f982d61f1cd53c35834fb.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/6ec58522ee8e202a3f982d61f1cd53c35834fb.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/6ec58522ee8e202a3f982d61f1cd53c35834fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d2/6ec58522ee8e202a3f982d61f1cd53c35834fb.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b8/c696af8c6913ffdb60fea03a8b769609fa3023.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b8/c696af8c6913ffdb60fea03a8b769609fa3023.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b8/c696af8c6913ffdb60fea03a8b769609fa3023.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b8/c696af8c6913ffdb60fea03a8b769609fa3023.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/f695c12b0aea1b1c8b327bc40dc6346f4582a1.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/f695c12b0aea1b1c8b327bc40dc6346f4582a1.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/f695c12b0aea1b1c8b327bc40dc6346f4582a1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/f695c12b0aea1b1c8b327bc40dc6346f4582a1.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/b6e967b8c057bd363b965e9d11fbc25be40c39.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/b6e967b8c057bd363b965e9d11fbc25be40c39.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/b6e967b8c057bd363b965e9d11fbc25be40c39.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/4e/b6e967b8c057bd363b965e9d11fbc25be40c39.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/53 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/53/df131e7cb8728bbdf3531c962cab2037b13560.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/53/df131e7cb8728bbdf3531c962cab2037b13560.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/53/df131e7cb8728bbdf3531c962cab2037b13560.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/53/df131e7cb8728bbdf3531c962cab2037b13560.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0f/c0e816e54eae61767e50e4cb3fa72482f88922.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0f/c0e816e54eae61767e50e4cb3fa72482f88922.debug chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0f/c0e816e54eae61767e50e4cb3fa72482f88922.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0f/c0e816e54eae61767e50e4cb3fa72482f88922.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/trie.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-38-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/KDTree/_CKDTree.cpython-38-arm-linux-gnueabihf.so dh_installdeb -a -O--buildsystem=pybuild printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst chown 0:0 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm chown 0:0 -- debian/python3-biopython/DEBIAN/prerm dh_gencontrol -a -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=0a28b5548ec4a631f342bc3bb19cc695e5789be1 0fc0e816e54eae61767e50e4cb3fa72482f88922 42f695c12b0aea1b1c8b327bc40dc6346f4582a1 4eb6e967b8c057bd363b965e9d11fbc25be40c39 53df131e7cb8728bbdf3531c962cab2037b13560 75d1ba690f7c466ea156275ad1e019dffef1feba b8c696af8c6913ffdb60fea03a8b769609fa3023 d26ec58522ee8e202a3f982d61f1cd53c35834fb f2a1a73bcda7ef5e493af950f064799f40f5951c" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython -UMulti-Arch dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-biopython: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-biopython/DEBIAN/control chown 0:0 -- debian/python3-biopython/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums chown 0:0 -- debian/python3-biopython/DEBIAN/md5sums cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --build debian/python3-biopython .. install -d debian/.debhelper/scratch-space/build-python3-biopython dpkg-deb --build debian/.debhelper/python3-biopython/dbgsym-root debian/.debhelper/scratch-space/build-python3-biopython INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-biopython (in debian/python3-biopython); do_strip: , oemstrip: pkgstriptranslations: processing python3-biopython-dbgsym (in debian/.debhelper/python3-biopython/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control, package python3-biopython-dbgsym, directory debian/.debhelper/python3-biopython/dbgsym-root dpkg-deb: building package 'python3-biopython-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.deb'. pkgstripfiles: processing control file: debian/python3-biopython/DEBIAN/control, package python3-biopython, directory debian/python3-biopython pkgstripfiles: Truncating usr/share/doc/python3-biopython/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-biopython ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.76+dfsg-1build1_armhf.deb'. Renaming python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.deb to python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.ddeb mv debian/.debhelper/scratch-space/build-python3-biopython/python3-biopython-dbgsym_1.76\+dfsg-1build1_armhf.deb ../python3-biopython-dbgsym_1.76\+dfsg-1build1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../python-biopython_1.76+dfsg-1build1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200221-0824 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-biopython_1.76+dfsg-1build1_armhf.changes: ------------------------------------------------- Format: 1.8 Date: Tue, 18 Feb 2020 09:21:18 +0100 Source: python-biopython Binary: python3-biopython Architecture: armhf Version: 1.76+dfsg-1build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: python3-biopython - Python3 library for bioinformatics Changes: python-biopython (1.76+dfsg-1build1) focal; urgency=medium . * No-change rebuild to drop python3.7. Checksums-Sha1: 24ad6f8d2cc5dc5b4f1d2f5cbaaf86f6f5e23afc 12146 python-biopython_1.76+dfsg-1build1_armhf.buildinfo bc67d4c28d907141d49735ddb9ba6ab039cc6540 296496 python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.ddeb c34c728b3fbaef2178ca75015432ceee0f005233 1375884 python3-biopython_1.76+dfsg-1build1_armhf.deb Checksums-Sha256: a4633edcf64d157885b92107261754f4a4c2d38a9b0be4c30b17c1b7eed79e59 12146 python-biopython_1.76+dfsg-1build1_armhf.buildinfo 57d5eaa818c1c507eb936aee8bb7afd25ee9aac8883470c0b1c452204e3450ce 296496 python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.ddeb 3ee2e7ef56220766707150c6c30fba2bb1aeb19e572a2d45ce3f8222737f93e0 1375884 python3-biopython_1.76+dfsg-1build1_armhf.deb Files: 2b89d28de02b69e1191e2863d7dc02e8 12146 python optional python-biopython_1.76+dfsg-1build1_armhf.buildinfo 5e8c15bca51e53f833506b822b87c229 296496 debug optional python3-biopython-dbgsym_1.76+dfsg-1build1_armhf.ddeb f70659c500e50be1a66281f60aa30781 1375884 python optional python3-biopython_1.76+dfsg-1build1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-biopython_1.76+dfsg-1build1_armhf.deb --------------------------------------------- new debian package, version 2.0. size 1375884 bytes: control archive=16692 bytes. 1480 bytes, 26 lines control 58869 bytes, 626 lines md5sums 260 bytes, 12 lines * postinst #!/bin/sh 409 bytes, 12 lines * prerm #!/bin/sh Package: python3-biopython Source: python-biopython Version: 1.76+dfsg-1build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 9235 Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3 (<< 3.9), python3 (>= 3.8~), python3:any, libc6 (>= 2.4), python3-reportlab Recommends: python-biopython-doc (= 1.76+dfsg-1build1), ncbi-blast+ Suggests: python3-tk, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, phylip, phyml, prank, probcons, python3-mysqldb, python3-matplotlib, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-scipy, raxml, samtools, t-coffee, wise, w3-dtd-mathml Section: python Priority: optional Homepage: http://biopython.org Description: Python3 library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python3 libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. 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Machine Architecture: arm64 Package: python-biopython Package-Time: 1940 Source-Version: 1.76+dfsg-1build1 Space: 294564 Status: successful Version: 1.76+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 20200221-0824 Build needed 00:32:20, 294564k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18723467 Scanning for processes to kill in build PACKAGEBUILD-18723467