RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-015 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:04:18 UTC 2015 ppc64le Buildd toolchain package versions: launchpad-buildd_135~177~ubuntu15.04.1 python-lpbuildd_135~177~ubuntu15.04.1 sbuild_0.65.2-1ubuntu2+ppa1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.6.0+bzr6595-6ubuntu1 dpkg-dev_1.17.25ubuntu1 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 23 Oct 19:47:50 ntpdate[1390]: adjust time server 10.211.37.1 offset 0.056660 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8175468', '/home/buildd/filecache-default/64ba6963cee521707036a0c48846d736532c58ef'] Unpacking chroot for build PACKAGEBUILD-8175468 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8175468'] Mounting chroot for build PACKAGEBUILD-8175468 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8175468', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8175468 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8175468', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-8175468 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [64.4 kB] Get:5 http://ftpmaster.internal xenial/main ppc64el Packages [1368 kB] Get:6 http://ftpmaster.internal xenial/universe ppc64el Packages [6506 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [839 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4583 kB] Get:9 http://ftpmaster.internal xenial-security/main ppc64el Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe ppc64el Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main ppc64el Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe ppc64el Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main ppc64el Packages [53.4 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe ppc64el Packages [85.1 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [33.6 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [57.4 kB] Fetched 13.9 MB in 5s (2714 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils cpp-5 dpkg dpkg-dev g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libdpkg-perl libgcc-5-dev libgcc1 libgomp1 libitm1 libstdc++-5-dev libstdc++6 libubsan0 pkg-create-dbgsym 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 89.4 MB of archives. After this operation, 293 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files ppc64el 9.4ubuntu2 [72.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial-proposed/main dpkg ppc64el 1.18.3ubuntu1 [2094 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libubsan0 ppc64el 5.2.1-22ubuntu4 [95.9 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5-base ppc64el 5.2.1-22ubuntu4 [16.5 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++6 ppc64el 5.2.1-22ubuntu4 [410 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgomp1 ppc64el 5.2.1-22ubuntu4 [50.3 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libitm1 ppc64el 5.2.1-22ubuntu4 [27.3 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libatomic1 ppc64el 5.2.1-22ubuntu4 [7930 B] Get:9 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libasan2 ppc64el 5.2.1-22ubuntu4 [237 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial-proposed/main cpp-5 ppc64el 5.2.1-22ubuntu4 [24.0 MB] Get:11 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libcc1-0 ppc64el 5.2.1-22ubuntu4 [30.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial-proposed/main binutils ppc64el 2.25.51.20151022-0ubuntu1 [2207 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial-proposed/main g++-5 ppc64el 5.2.1-22ubuntu4 [33.4 MB] Get:14 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5 ppc64el 5.2.1-22ubuntu4 [24.0 MB] Get:15 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc-5-dev ppc64el 5.2.1-22ubuntu4 [579 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++-5-dev ppc64el 5.2.1-22ubuntu4 [1415 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc1 ppc64el 1:5.2.1-22ubuntu4 [27.5 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial-proposed/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.4 MB in 9s (9601 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11573 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu2_ppc64el.deb ... Unpacking base-files (9.4ubuntu2) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11575 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.3ubuntu1_ppc64el.deb ... Unpacking dpkg (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Setting up dpkg (1.18.3ubuntu1) ... (Reading database ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8175468', 'ppc64el', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=xenial-proposed', '--purge=never', '--nolog', 'python-biopython_1.65+dfsg-1build1.dsc'] Initiating build PACKAGEBUILD-8175468 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:04:18 UTC 2015 ppc64le sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-ppc64el-015.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ python-biopython 1.65+dfsg-1build1 (ppc64el) 23 Oct 2015 19:48 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: python-biopython Version: 1.65+dfsg-1build1 Source Version: 1.65+dfsg-1build1 Distribution: xenial-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/python-biopython-8nVl12/python-biopython-1.65+dfsg' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/python-biopython-8nVl12' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8175468/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── python-biopython_1.65+dfsg-1build1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-QDsXCz/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phyml, prank, probcons, python-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dpkg-dev (>= 1.16.1~), python-all-dev, python3-all-dev, python-numpy, python3-numpy, flex, python-reportlab, python3-reportlab, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, muscle, ncbi-blast+, phyml, prank, probcons, python-mysqldb, python-matplotlib, python3-matplotlib, python-pil, python3-pil, python-rdflib (>= 4), python3-rdflib (>= 4), python-renderpm, python3-renderpm, python-psycopg2, python3-psycopg2, t-coffee, wise (>= 2.4.1-16) dpkg-deb: building package 'sbuild-build-depends-python-biopython-dummy' in '/«BUILDDIR»/resolver-tbyksG/apt_archive/sbuild-build-depends-python-biopython-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install python-biopython build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils clustalo clustalw debhelper dh-python dialign dssp emboss emboss-data emboss-lib fasttree file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base gsfonts intltool-debian libargtable2-0 libart-2.0-2 libasprintf0v5 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0 libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfl-dev libfontconfig1 libfreetype6 libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhpdf-2.2.1 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmagic1 libmpdec2 libmysqlclient18 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libvpx2 libwebp5 libwebpmux1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data phyml po-debconf prank probcons python python-all python-all-dev python-dateutil python-dev python-funcsigs python-isodate python-matplotlib python-matplotlib-data python-minimal python-mock python-mysqldb python-nose python-numpy python-pbr python-pil python-pkg-resources python-psycopg2 python-pyparsing python-rdflib python-renderpm python-reportlab python-reportlab-accel python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dateutil python3-dev python3-isodate python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4 python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal shared-mime-info t-coffee ucf wise wise-data x11-common Suggested packages: wamerican wordlist whois vacation clustalx seaview dh-make emboss-doc emboss-test embassy bison gettext-doc groff cups-common libgd-tools librsvg2-common gvfs javascript-common libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 less www-browser libmail-box-perl probcons-extra python-doc python-tk python-funcsigs-doc dvipng gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-scipy python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-mock-doc mysql-server-5.1 mysql-server python-egenix-mxdatetime python-mysqldb-dbg python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-pil-doc python-pil-dbg python-setuptools python-psycopg2-doc python-rdflib-doc python-rdflib-tools python-renderpm-dbg pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv ipython3 python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt4 python3-scipy python3-sip python3-tornado python3-numpy-dbg python3-pil-dbg python3-setuptools python3-renderpm-dbg python3-egenix-mxtexttools python3.4-venv python3.4-doc python3.5-venv python3.5-doc boxshade t-coffee-examples fsa wise-doc Recommended packages: primer3 curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data xdg-user-dirs hicolor-icon-theme libgtk2.0-bin xml-core blast2 libwww-perl lynx ruby libmail-sendmail-perl python-glade2 python-imaging python-sparqlwrapper python-html5lib python3-sparqlwrapper python3-html5lib amap-align dialign-tx kalign libsoap-lite-perl libxml-simple-perl mustang poa proda tm-align The following NEW packages will be installed: bsdmainutils clustalo clustalw debhelper dh-python dialign dssp emboss emboss-data emboss-lib fasttree file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base gsfonts intltool-debian libargtable2-0 libart-2.0-2 libasprintf0v5 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-common libblas3 libboost-iostreams1.58.0 libboost-program-options1.58.0 libboost-system1.58.0 libboost-thread1.58.0 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfl-dev libfontconfig1 libfreetype6 libgd3 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhpdf-2.2.1 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 libmagic1 libmpdec2 libmysqlclient18 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpq5 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.4 libpython3.4-dev libpython3.4-minimal libpython3.4-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libvpx2 libwebp5 libwebpmux1 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxpm4 libxrandr2 libxrender1 libxss1 m4 mafft man-db mime-support muscle mysql-common ncbi-blast+ ncbi-data phyml po-debconf prank probcons python python-all python-all-dev python-dateutil python-dev python-funcsigs python-isodate python-matplotlib python-matplotlib-data python-minimal python-mock python-mysqldb python-nose python-numpy python-pbr python-pil python-pkg-resources python-psycopg2 python-pyparsing python-rdflib python-renderpm python-reportlab python-reportlab-accel python-six python-tz python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dateutil python3-dev python3-isodate python3-matplotlib python3-minimal python3-nose python3-numpy python3-pil python3-pkg-resources python3-psycopg2 python3-pyparsing python3-rdflib python3-renderpm python3-reportlab python3-reportlab-accel python3-six python3-tz python3.4 python3.4-dev python3.4-minimal python3.5 python3.5-dev python3.5-minimal sbuild-build-depends-python-biopython-dummy shared-mime-info t-coffee ucf wise wise-data x11-common 0 upgraded, 193 newly installed, 0 to remove and 0 not upgraded. Need to get 219 MB/219 MB of archives. After this operation, 1014 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-python-biopython-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libmpdec2 ppc64el 2.4.1-1 [84.7 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.5-minimal ppc64el 3.5.0-3 [524 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main libexpat1 ppc64el 2.1.0-7 [76.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main python3.5-minimal ppc64el 3.5.0-3 [1593 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3-minimal ppc64el 3.5.0-2 [23.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main mime-support all 3.58ubuntu1 [31.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.5-stdlib ppc64el 3.5.0-3 [2155 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main python3.5 ppc64el 3.5.0-3 [150 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libpython3-stdlib ppc64el 3.5.0-2 [7066 B] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main dh-python all 2.20150826ubuntu1 [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3 ppc64el 3.5.0-2 [8662 B] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.4-minimal ppc64el 3.4.3-9ubuntu1 [468 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main python3.4-minimal ppc64el 3.4.3-9ubuntu1 [1518 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 ppc64el 0.19.4-1ubuntu3 [6832 B] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libxdmcp6 ppc64el 1:1.1.2-1 [11.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libxcb1 ppc64el 1.11-0ubuntu1 [37.7 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libx11-6 ppc64el 2:1.6.3-1ubuntu2 [570 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main groff-base ppc64el 1.22.3-1 [1396 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils ppc64el 9.0.6ubuntu1 [175 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 ppc64el 1.4.1-1 [24.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main man-db ppc64el 2.7.4-1 [850 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libsigsegv2 ppc64el 2.10-4 [13.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main m4 ppc64el 1.4.17-4 [194 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libfl-dev ppc64el 2.5.39-8 [13.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main flex ppc64el 2.5.39-8 [290 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main ucf all 3.0030 [55.5 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libfreetype6 ppc64el 2.5.2-4ubuntu2 [325 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libfontconfig1 ppc64el 2.11.1-0ubuntu6 [141 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig ppc64el 2.11.1-0ubuntu6 [175 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libart-2.0-2 ppc64el 2.3.21-2 [59.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libavahi-common-data ppc64el 0.6.31-4ubuntu4 [21.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libavahi-common3 ppc64el 0.6.31-4ubuntu4 [19.9 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libavahi-client3 ppc64el 0.6.31-4ubuntu4 [23.0 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 ppc64el 2.46.1-1 [1034 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 ppc64el 55.1-4ubuntu1 [7737 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 ppc64el 2.9.2+zdfsg1-4 [607 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 ppc64el 0.6.8-3 [77.2 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libgraphite2-3 ppc64el 1.2.4-3ubuntu1 [52.3 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-turbo8 ppc64el 1.3.0-0ubuntu2 [119 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main liblcms2-2 ppc64el 2.6-3ubuntu2 [169 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main mysql-common all 5.6.25-0ubuntu1 [14.7 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libmysqlclient18 ppc64el 5.6.25-0ubuntu1 [670 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libthai-data all 0.1.22-2 [131 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libdatrie1 ppc64el 0.2.9-2 [16.6 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libthai0 ppc64el 0.1.22-2 [17.2 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libpango-1.0-0 ppc64el 1.36.8-3 [156 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libpixman-1-0 ppc64el 0.32.6-3 [188 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-render0 ppc64el 1.11-0ubuntu1 [11.0 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-shm0 ppc64el 1.11-0ubuntu1 [5768 B] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libxrender1 ppc64el 1:0.9.9-0ubuntu1 [18.1 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libcairo2 ppc64el 1.14.2-2ubuntu2 [605 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libharfbuzz0b ppc64el 1.0.1-1build2 [136 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libpangoft2-1.0-0 ppc64el 1.36.8-3 [34.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libpangocairo-1.0-0 ppc64el 1.36.8-3 [20.6 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libtcl8.6 ppc64el 8.6.4+dfsg-2ubuntu1 [875 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libjbig0 ppc64el 2.1-3.1 [26.4 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libtiff5 ppc64el 4.0.3-12.3ubuntu2 [156 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libxft2 ppc64el 2.3.2-1 [39.3 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main x11-common all 1:7.7+7ubuntu4 [58.6 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main libxss1 ppc64el 1:1.2.2-1 [7510 B] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main libtk8.6 ppc64el 8.6.4+dfsg-2ubuntu1 [685 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 ppc64el 0.9.3-5.2ubuntu1 [269 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libxcomposite1 ppc64el 1:0.4.4-1 [6872 B] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libxfixes3 ppc64el 1:5.0.1-2 [11.2 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libxcursor1 ppc64el 1:1.1.14-1 [21.6 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libxdamage1 ppc64el 1:1.1.4-2 [6820 B] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libxi6 ppc64el 2:1.7.4-1 [28.5 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libxinerama1 ppc64el 2:1.1.3-1 [7160 B] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libxpm4 ppc64el 1:3.5.11-1 [35.3 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-minimal ppc64el 2.7.10-4ubuntu1 [338 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main python2.7-minimal ppc64el 2.7.10-4ubuntu1 [960 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main python-minimal ppc64el 2.7.9-1 [28.4 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-stdlib ppc64el 2.7.10-4ubuntu1 [1757 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main python2.7 ppc64el 2.7.10-4ubuntu1 [210 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libpython-stdlib ppc64el 2.7.9-1 [7798 B] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main python ppc64el 2.7.9-1 [137 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 ppc64el 1:5.22+15-2ubuntu1 [215 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main file ppc64el 1:5.22+15-2ubuntu1 [21.2 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.4-stdlib ppc64el 3.4.3-9ubuntu1 [2130 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main python3.4 ppc64el 3.4.3-9ubuntu1 [186 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base ppc64el 0.19.4-1ubuntu3 [47.2 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main shared-mime-info ppc64el 1.3-1 [389 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/universe libargtable2-0 ppc64el 12-1.1 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/universe clustalo ppc64el 1.2.1-1 [253 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/universe clustalw ppc64el 2.1+lgpl-4 [298 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main gettext ppc64el 0.19.4-1ubuntu3 [874 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial-proposed/main debhelper all 9.20151005ubuntu1 [729 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/universe dialign ppc64el 2.2.1-7 [136 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libboost-iostreams1.58.0 ppc64el 1.58.0+dfsg-3.1ubuntu1 [28.7 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libboost-program-options1.58.0 ppc64el 1.58.0+dfsg-3.1ubuntu1 [130 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libboost-system1.58.0 ppc64el 1.58.0+dfsg-3.1ubuntu1 [9456 B] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libboost-thread1.58.0 ppc64el 1.58.0+dfsg-3.1ubuntu1 [45.7 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/universe dssp ppc64el 2.2.1-2ubuntu1 [165 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libvpx2 ppc64el 1.4.0-4 [700 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libgd3 ppc64el 2.1.1-4build1 [141 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/universe libhpdf-2.2.1 ppc64el 2.2.1-1.1 [336 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libpq5 ppc64el 9.4.5-1build1 [76.2 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/universe emboss-lib ppc64el 6.6.0+dfsg-1 [2988 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/universe emboss-data all 6.6.0+dfsg-1 [60.7 MB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/universe emboss ppc64el 6.6.0+dfsg-1 [951 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/universe fonts-lyx all 2.1.4-2 [161 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main libatk1.0-data all 2.16.0-2build1 [16.9 kB] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main libatk1.0-0 ppc64el 2.16.0-2build1 [52.4 kB] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main libblas-common ppc64el 1.2.20110419-10 [3072 B] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main libblas3 ppc64el 1.2.20110419-10 [156 kB] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main libcups2 ppc64el 2.1.0-4ubuntu3 [190 kB] Get:116 http://ftpmaster.internal/ubuntu/ xenial/main libexpat1-dev ppc64el 2.1.0-7 [123 kB] Get:117 http://ftpmaster.internal/ubuntu/ xenial/main libgdk-pixbuf2.0-common all 2.32.1-1 [10.1 kB] Get:118 http://ftpmaster.internal/ubuntu/ xenial/main libgdk-pixbuf2.0-0 ppc64el 2.32.1-1 [179 kB] Get:119 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgfortran3 ppc64el 5.2.1-22ubuntu4 [211 kB] Get:120 http://ftpmaster.internal/ubuntu/ xenial/main libgtk2.0-common all 2.24.28-1ubuntu1 [123 kB] Get:121 http://ftpmaster.internal/ubuntu/ xenial/main libxrandr2 ppc64el 2:1.5.0-1 [16.8 kB] Get:122 http://ftpmaster.internal/ubuntu/ xenial/main libgtk2.0-0 ppc64el 2.24.28-1ubuntu1 [1553 kB] Get:123 http://ftpmaster.internal/ubuntu/ xenial/main libjs-jquery all 1.7.2+dfsg-3ubuntu2 [69.0 kB] Get:124 http://ftpmaster.internal/ubuntu/ xenial/universe libjs-jquery-ui all 1.10.1+dfsg-1 [458 kB] Get:125 http://ftpmaster.internal/ubuntu/ xenial/main liblapack3 ppc64el 3.5.0-4 [1559 kB] Get:126 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7 ppc64el 2.7.10-4ubuntu1 [964 kB] Get:127 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-dev ppc64el 2.7.10-4ubuntu1 [1633 kB] Get:128 http://ftpmaster.internal/ubuntu/ xenial/main libpython-dev ppc64el 2.7.9-1 [7860 B] Get:129 http://ftpmaster.internal/ubuntu/ xenial/main libpython-all-dev ppc64el 2.7.9-1 [1048 B] Get:130 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.5 ppc64el 3.5.0-3 [1245 kB] Get:131 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.5-dev ppc64el 3.5.0-3 [37.2 MB] Get:132 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libpython3-dev ppc64el 3.5.0-2 [7168 B] Get:133 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.4 ppc64el 3.4.3-9ubuntu1 [1180 kB] Get:134 http://ftpmaster.internal/ubuntu/ xenial/main libpython3.4-dev ppc64el 3.4.3-9ubuntu1 [34.3 MB] Get:135 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libpython3-all-dev ppc64el 3.5.0-2 [1008 B] Get:136 http://ftpmaster.internal/ubuntu/ xenial/universe mafft ppc64el 7.245-1 [758 kB] Get:137 http://ftpmaster.internal/ubuntu/ xenial/universe muscle ppc64el 1:3.8.31-1 [171 kB] Get:138 http://ftpmaster.internal/ubuntu/ xenial/universe ncbi-data all 6.1.20120620-8 [3288 kB] Get:139 http://ftpmaster.internal/ubuntu/ xenial/universe ncbi-blast+ ppc64el 2.2.30-4build1 [8046 kB] Get:140 http://ftpmaster.internal/ubuntu/ xenial/universe phyml ppc64el 2:20120412-2 [945 kB] Get:141 http://ftpmaster.internal/ubuntu/ xenial/universe prank ppc64el 0.0.140110-1 [306 kB] Get:142 http://ftpmaster.internal/ubuntu/ xenial/universe probcons ppc64el 1.12-9 [132 kB] Get:143 http://ftpmaster.internal/ubuntu/ xenial/main python-all ppc64el 2.7.9-1 [1030 B] Get:144 http://ftpmaster.internal/ubuntu/ xenial/main python2.7-dev ppc64el 2.7.10-4ubuntu1 [270 kB] Get:145 http://ftpmaster.internal/ubuntu/ xenial/main python-dev ppc64el 2.7.9-1 [1232 B] Get:146 http://ftpmaster.internal/ubuntu/ xenial/main python-all-dev ppc64el 2.7.9-1 [1060 B] Get:147 http://ftpmaster.internal/ubuntu/ xenial/main python-six all 1.9.0-5 [10.7 kB] Get:148 http://ftpmaster.internal/ubuntu/ xenial/main python-dateutil all 2.2-2 [51.2 kB] Get:149 http://ftpmaster.internal/ubuntu/ xenial/main python-funcsigs all 0.4-1 [12.5 kB] Get:150 http://ftpmaster.internal/ubuntu/ xenial/main python-isodate all 0.5.1-2build1 [22.5 kB] Get:151 http://ftpmaster.internal/ubuntu/ xenial/universe python-matplotlib-data all 1.4.2-3.1ubuntu1 [2526 kB] Get:152 http://ftpmaster.internal/ubuntu/ xenial/main python-pyparsing all 2.0.3+dfsg1-1 [35.3 kB] Get:153 http://ftpmaster.internal/ubuntu/ xenial/main python-tz all 2014.10~dfsg1-0ubuntu2 [31.5 kB] Get:154 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python-numpy ppc64el 1:1.8.2-1ubuntu3 [1540 kB] Get:155 http://ftpmaster.internal/ubuntu/ xenial/main python-pbr all 1.8.0-2ubuntu1 [46.6 kB] Get:156 http://ftpmaster.internal/ubuntu/ xenial/main python-mock all 1.3.0-2.1ubuntu1 [46.5 kB] Get:157 http://ftpmaster.internal/ubuntu/ xenial/main python-pkg-resources all 18.4-1 [70.7 kB] Get:158 http://ftpmaster.internal/ubuntu/ xenial/main python-nose all 1.3.6-1 [116 kB] Get:159 http://ftpmaster.internal/ubuntu/ xenial/universe python-matplotlib ppc64el 1.4.2-3.1ubuntu1 [3439 kB] Get:160 http://ftpmaster.internal/ubuntu/ xenial/main python-mysqldb ppc64el 1.3.4-2 [44.0 kB] Get:161 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libwebp5 ppc64el 0.4.3-1.3build1 [192 kB] Get:162 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libwebpmux1 ppc64el 0.4.3-1.3build1 [13.8 kB] Get:163 http://ftpmaster.internal/ubuntu/ xenial/main python-pil ppc64el 2.9.0-1 [301 kB] Get:164 http://ftpmaster.internal/ubuntu/ xenial/main python-psycopg2 ppc64el 2.6.1-1build1 [125 kB] Get:165 http://ftpmaster.internal/ubuntu/ xenial/main python-rdflib ppc64el 4.1.2-3 [230 kB] Get:166 http://ftpmaster.internal/ubuntu/ xenial/main python-renderpm ppc64el 3.2.0-1build1 [32.3 kB] Get:167 http://ftpmaster.internal/ubuntu/ xenial/main python-reportlab-accel ppc64el 3.2.0-1build1 [22.6 kB] Get:168 http://ftpmaster.internal/ubuntu/ xenial/main python-reportlab all 3.2.0-1build1 [457 kB] Get:169 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3-all ppc64el 3.5.0-2 [982 B] Get:170 http://ftpmaster.internal/ubuntu/ xenial/main python3.5-dev ppc64el 3.5.0-3 [418 kB] Get:171 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3-dev ppc64el 3.5.0-2 [1194 B] Get:172 http://ftpmaster.internal/ubuntu/ xenial/main python3.4-dev ppc64el 3.4.3-9ubuntu1 [417 kB] Get:173 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3-all-dev ppc64el 3.5.0-2 [1008 B] Get:174 http://ftpmaster.internal/ubuntu/ xenial/main python3-six all 1.9.0-5 [10.8 kB] Get:175 http://ftpmaster.internal/ubuntu/ xenial/main python3-dateutil all 2.2-2 [33.0 kB] Get:176 http://ftpmaster.internal/ubuntu/ xenial/main python3-isodate all 0.5.1-2build1 [22.5 kB] Get:177 http://ftpmaster.internal/ubuntu/ xenial/main python3-pyparsing all 2.0.3+dfsg1-1 [35.4 kB] Get:178 http://ftpmaster.internal/ubuntu/ xenial/main python3-tz all 2014.10~dfsg1-0ubuntu2 [24.6 kB] Get:179 http://ftpmaster.internal/ubuntu/ xenial-proposed/main python3-numpy ppc64el 1:1.8.2-1ubuntu3 [1599 kB] Get:180 http://ftpmaster.internal/ubuntu/ xenial/main python3-pkg-resources all 18.4-1 [41.4 kB] Get:181 http://ftpmaster.internal/ubuntu/ xenial/main python3-nose all 1.3.6-1 [116 kB] Get:182 http://ftpmaster.internal/ubuntu/ xenial/universe python3-matplotlib ppc64el 1.4.2-3.1ubuntu1 [3561 kB] Get:183 http://ftpmaster.internal/ubuntu/ xenial/main python3-pil ppc64el 2.9.0-1 [303 kB] Get:184 http://ftpmaster.internal/ubuntu/ xenial/main python3-psycopg2 ppc64el 2.6.1-1build1 [122 kB] Get:185 http://ftpmaster.internal/ubuntu/ xenial/universe python3-rdflib ppc64el 4.1.2-3 [229 kB] Get:186 http://ftpmaster.internal/ubuntu/ xenial/main python3-renderpm ppc64el 3.2.0-1build1 [32.6 kB] Get:187 http://ftpmaster.internal/ubuntu/ xenial/main python3-reportlab-accel ppc64el 3.2.0-1build1 [18.5 kB] Get:188 http://ftpmaster.internal/ubuntu/ xenial/main python3-reportlab all 3.2.0-1build1 [453 kB] Get:189 http://ftpmaster.internal/ubuntu/ xenial/universe t-coffee ppc64el 11.00.8cbe486-1 [922 kB] Get:190 http://ftpmaster.internal/ubuntu/ xenial/universe wise-data all 2.4.1-17 [107 kB] Get:191 http://ftpmaster.internal/ubuntu/ xenial/universe wise ppc64el 2.4.1-17 [1177 kB] Get:192 http://ftpmaster.internal/ubuntu/ xenial/universe fasttree ppc64el 2.1.8-2 [156 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 219 MB in 23s (9234 kB/s) Selecting previously unselected package libmpdec2:ppc64el. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11571 files and directories currently installed.) Preparing to unpack .../libmpdec2_2.4.1-1_ppc64el.deb ... Unpacking libmpdec2:ppc64el (2.4.1-1) ... Selecting previously unselected package libpython3.5-minimal:ppc64el. Preparing to unpack .../libpython3.5-minimal_3.5.0-3_ppc64el.deb ... Unpacking libpython3.5-minimal:ppc64el (3.5.0-3) ... Selecting previously unselected package libexpat1:ppc64el. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12522 files and directories currently installed.) Preparing to unpack .../python3_3.5.0-2_ppc64el.deb ... Unpacking python3 (3.5.0-2) ... Selecting previously unselected package libpython3.4-minimal:ppc64el. Preparing to unpack .../libpython3.4-minimal_3.4.3-9ubuntu1_ppc64el.deb ... Unpacking libpython3.4-minimal:ppc64el (3.4.3-9ubuntu1) ... Selecting previously unselected package python3.4-minimal. 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Unpacking python2.7 (2.7.10-4ubuntu1) ... Selecting previously unselected package libpython-stdlib:ppc64el. Preparing to unpack .../libpython-stdlib_2.7.9-1_ppc64el.deb ... Unpacking libpython-stdlib:ppc64el (2.7.9-1) ... Processing triggers for systemd (225-1ubuntu9) ... Setting up libpython2.7-minimal:ppc64el (2.7.10-4ubuntu1) ... Setting up python2.7-minimal (2.7.10-4ubuntu1) ... Setting up python-minimal (2.7.9-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 15285 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_ppc64el.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_ppc64el.deb ... 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Setting up libmpdec2:ppc64el (2.4.1-1) ... Setting up mime-support (3.58ubuntu1) ... Setting up libpython3.5-stdlib:ppc64el (3.5.0-3) ... Setting up python3.5 (3.5.0-3) ... Setting up libpython3-stdlib:ppc64el (3.5.0-2) ... Setting up libpython3.4-minimal:ppc64el (3.4.3-9ubuntu1) ... Setting up python3.4-minimal (3.4.3-9ubuntu1) ... Setting up libasprintf0v5:ppc64el (0.19.4-1ubuntu3) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up libxdmcp6:ppc64el (1:1.1.2-1) ... Setting up libxcb1:ppc64el (1.11-0ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:ppc64el (2:1.6.3-1ubuntu2) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:ppc64el (1.4.1-1) ... Setting up man-db (2.7.4-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libsigsegv2:ppc64el (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up libfl-dev:ppc64el (2.5.39-8) ... Setting up flex (2.5.39-8) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libfreetype6:ppc64el (2.5.2-4ubuntu2) ... Setting up libfontconfig1:ppc64el (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up libart-2.0-2:ppc64el (2.3.21-2) ... Setting up libavahi-common-data:ppc64el (0.6.31-4ubuntu4) ... Setting up libavahi-common3:ppc64el (0.6.31-4ubuntu4) ... Setting up libavahi-client3:ppc64el (0.6.31-4ubuntu4) ... Setting up libglib2.0-0:ppc64el (2.46.1-1) ... No schema files found: doing nothing. Setting up libicu55:ppc64el (55.1-4ubuntu1) ... Setting up libxml2:ppc64el (2.9.2+zdfsg1-4) ... Setting up libcroco3:ppc64el (0.6.8-3) ... Setting up libgraphite2-3:ppc64el (1.2.4-3ubuntu1) ... Setting up libjpeg-turbo8:ppc64el (1.3.0-0ubuntu2) ... Setting up liblcms2-2:ppc64el (2.6-3ubuntu2) ... Setting up mysql-common (5.6.25-0ubuntu1) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libmysqlclient18:ppc64el (5.6.25-0ubuntu1) ... Setting up libthai-data (0.1.22-2) ... Setting up libdatrie1:ppc64el (0.2.9-2) ... Setting up libthai0:ppc64el (0.1.22-2) ... Setting up libpango-1.0-0:ppc64el (1.36.8-3) ... Setting up libpixman-1-0:ppc64el (0.32.6-3) ... Setting up libxcb-render0:ppc64el (1.11-0ubuntu1) ... Setting up libxcb-shm0:ppc64el (1.11-0ubuntu1) ... Setting up libxrender1:ppc64el (1:0.9.9-0ubuntu1) ... Setting up libcairo2:ppc64el (1.14.2-2ubuntu2) ... Setting up libharfbuzz0b:ppc64el (1.0.1-1build2) ... Setting up libpangoft2-1.0-0:ppc64el (1.36.8-3) ... Setting up libpangocairo-1.0-0:ppc64el (1.36.8-3) ... 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Setting up libgdk-pixbuf2.0-0:ppc64el (2.32.1-1) ... Setting up libgfortran3:ppc64el (5.2.1-22ubuntu4) ... Setting up libgtk2.0-common (2.24.28-1ubuntu1) ... Setting up libxrandr2:ppc64el (2:1.5.0-1) ... Setting up libgtk2.0-0:ppc64el (2.24.28-1ubuntu1) ... Setting up libjs-jquery (1.7.2+dfsg-3ubuntu2) ... Setting up libjs-jquery-ui (1.10.1+dfsg-1) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython2.7:ppc64el (2.7.10-4ubuntu1) ... Setting up libpython2.7-dev:ppc64el (2.7.10-4ubuntu1) ... Setting up libpython-dev:ppc64el (2.7.9-1) ... Setting up libpython-all-dev:ppc64el (2.7.9-1) ... Setting up libpython3.5:ppc64el (3.5.0-3) ... Setting up libpython3.5-dev:ppc64el (3.5.0-3) ... Setting up libpython3-dev:ppc64el (3.5.0-2) ... Setting up libpython3.4:ppc64el (3.4.3-9ubuntu1) ... Setting up libpython3.4-dev:ppc64el (3.4.3-9ubuntu1) ... 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Setting up python-pbr (1.8.0-2ubuntu1) ... update-alternatives: using /usr/bin/python2-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python-mock (1.3.0-2.1ubuntu1) ... Setting up python-pkg-resources (18.4-1) ... Setting up python-nose (1.3.6-1) ... Setting up python-matplotlib (1.4.2-3.1ubuntu1) ... Setting up python-mysqldb (1.3.4-2) ... Setting up libwebp5:ppc64el (0.4.3-1.3build1) ... Setting up libwebpmux1:ppc64el (0.4.3-1.3build1) ... Setting up python-pil:ppc64el (2.9.0-1) ... Setting up python-psycopg2 (2.6.1-1build1) ... Setting up python-rdflib (4.1.2-3) ... Setting up python-renderpm:ppc64el (3.2.0-1build1) ... Setting up python-reportlab-accel:ppc64el (3.2.0-1build1) ... Setting up python-reportlab (3.2.0-1build1) ... Setting up python3.5-dev (3.5.0-3) ... Setting up python3.4-dev (3.4.3-9ubuntu1) ... Setting up t-coffee (11.00.8cbe486-1) ... Setting up wise-data (2.4.1-17) ... Setting up wise (2.4.1-17) ... Setting up fasttree (2.1.8-2) ... 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Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for systemd (225-1ubuntu9) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-31-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.25.51.20151022-0ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-22ubuntu4 gcc-5_5.2.1-22ubuntu4 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-22ubuntu4 libstdc++6_5.2.1-22ubuntu4 linux-libc-dev_4.2.0-16.19 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 base-files_9.4ubuntu2 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.51.20151022-0ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 clustalo_1.2.1-1 clustalw_2.1+lgpl-4 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-22ubuntu4 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20151005ubuntu1 debianutils_4.5.1 dh-python_2.20150826ubuntu1 dialign_2.2.1-7 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 dssp_2.2.1-2ubuntu1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 emboss_6.6.0+dfsg-1 emboss-data_6.6.0+dfsg-1 emboss-lib_6.6.0+dfsg-1 fakeroot_1.20.2-1ubuntu1 fasttree_2.1.8-2 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 flex_2.5.39-8 fontconfig_2.11.1-0ubuntu6 fontconfig-config_2.11.1-0ubuntu6 fonts-dejavu-core_2.35-1 fonts-lyx_2.1.4-2 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-22ubuntu4 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-22ubuntu4 gcc-5-base_5.2.1-22ubuntu4 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gsfonts_1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 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libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1.0-4ubuntu3 libcurl3-gnutls_7.43.0-1ubuntu2 libdatrie1_0.2.9-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-1ubuntu1 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libfl-dev_2.5.39-8 libfontconfig1_2.11.1-0ubuntu6 libfreetype6_2.5.2-4ubuntu2 libgcc-5-dev_5.2.1-22ubuntu4 libgcc1_1:5.2.1-22ubuntu4 libgcrypt20_1.6.3-2ubuntu1 libgd3_2.1.1-4build1 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.32.1-1 libgdk-pixbuf2.0-common_2.32.1-1 libgfortran3_5.2.1-22ubuntu4 libglib2.0-0_2.46.1-1 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu2 libgomp1_5.2.1-22ubuntu4 libgpg-error0_1.19-2 libgraphite2-3_1.2.4-3ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libgtk2.0-0_2.24.28-1ubuntu1 libgtk2.0-common_2.24.28-1ubuntu1 libharfbuzz0b_1.0.1-1build2 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhpdf-2.2.1_2.2.1-1.1 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-4ubuntu1 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.2.1-22ubuntu4 libjbig0_2.1-3.1 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjs-jquery_1.7.2+dfsg-3ubuntu2 libjs-jquery-ui_1.10.1+dfsg-1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack3_3.5.0-4 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpdec2_2.4.1-1 libmpfr4_3.1.3-1 libmysqlclient18_5.6.25-0ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.51-0ubuntu3 libpq5_9.4.5-1build1 libprocps3_1:3.3.9-1ubuntu8 libpython-all-dev_2.7.9-1 libpython-dev_2.7.9-1 libpython-stdlib_2.7.9-1 libpython2.7_2.7.10-4ubuntu1 libpython2.7-dev_2.7.10-4ubuntu1 libpython2.7-minimal_2.7.10-4ubuntu1 libpython2.7-stdlib_2.7.10-4ubuntu1 libpython3-all-dev_3.5.0-2 libpython3-dev_3.5.0-2 libpython3-stdlib_3.5.0-2 libpython3.4_3.4.3-9ubuntu1 libpython3.4-dev_3.4.3-9ubuntu1 libpython3.4-minimal_3.4.3-9ubuntu1 libpython3.4-stdlib_3.4.3-9ubuntu1 libpython3.5_3.5.0-3 libpython3.5-dev_3.5.0-3 libpython3.5-minimal_3.5.0-3 libpython3.5-stdlib_3.5.0-3 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu3 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-22ubuntu4 libstdc++6_5.2.1-22ubuntu4 libsystemd0_225-1ubuntu9 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2ubuntu1 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.3-12.3ubuntu2 libtinfo5_5.9+20150516-2ubuntu1 libtk8.6_8.6.4+dfsg-2ubuntu1 libubsan0_5.2.1-22ubuntu4 libudev1_225-1ubuntu9 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libvpx2_1.4.0-4 libwebp5_0.4.3-1.3build1 libwebpmux1_0.4.3-1.3build1 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb-render0_1.11-0ubuntu1 libxcb-shm0_1.11-0ubuntu1 libxcb1_1.11-0ubuntu1 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxft2_2.3.2-1 libxi6_2:1.7.4-1 libxinerama1_2:1.1.3-1 libxml2_2.9.2+zdfsg1-4 libxpm4_1:3.5.11-1 libxrandr2_2:1.5.0-1 libxrender1_1:0.9.9-0ubuntu1 libxss1_1:1.2.2-1 linux-libc-dev_4.2.0-16.19 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 mafft_7.245-1 make_4.0-8.2 man-db_2.7.4-1 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4 muscle_1:3.8.31-1 mysql-common_5.6.25-0ubuntu1 ncbi-blast+_2.2.30-4build1 ncbi-data_6.1.20120620-8 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 phyml_2:20120412-2 pkg-create-dbgsym_0.70 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 prank_0.0.140110-1 probcons_1.12-9 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-all_2.7.9-1 python-all-dev_2.7.9-1 python-dateutil_2.2-2 python-dev_2.7.9-1 python-funcsigs_0.4-1 python-isodate_0.5.1-2build1 python-matplotlib_1.4.2-3.1ubuntu1 python-matplotlib-data_1.4.2-3.1ubuntu1 python-minimal_2.7.9-1 python-mock_1.3.0-2.1ubuntu1 python-mysqldb_1.3.4-2 python-nose_1.3.6-1 python-numpy_1:1.8.2-1ubuntu3 python-pbr_1.8.0-2ubuntu1 python-pil_2.9.0-1 python-pkg-resources_18.4-1 python-psycopg2_2.6.1-1build1 python-pyparsing_2.0.3+dfsg1-1 python-rdflib_4.1.2-3 python-renderpm_3.2.0-1build1 python-reportlab_3.2.0-1build1 python-reportlab-accel_3.2.0-1build1 python-six_1.9.0-5 python-tz_2014.10~dfsg1-0ubuntu2 python2.7_2.7.10-4ubuntu1 python2.7-dev_2.7.10-4ubuntu1 python2.7-minimal_2.7.10-4ubuntu1 python3_3.5.0-2 python3-all_3.5.0-2 python3-all-dev_3.5.0-2 python3-dateutil_2.2-2 python3-dev_3.5.0-2 python3-isodate_0.5.1-2build1 python3-matplotlib_1.4.2-3.1ubuntu1 python3-minimal_3.5.0-2 python3-nose_1.3.6-1 python3-numpy_1:1.8.2-1ubuntu3 python3-pil_2.9.0-1 python3-pkg-resources_18.4-1 python3-psycopg2_2.6.1-1build1 python3-pyparsing_2.0.3+dfsg1-1 python3-rdflib_4.1.2-3 python3-renderpm_3.2.0-1build1 python3-reportlab_3.2.0-1build1 python3-reportlab-accel_3.2.0-1build1 python3-six_1.9.0-5 python3-tz_2014.10~dfsg1-0ubuntu2 python3.4_3.4.3-9ubuntu1 python3.4-dev_3.4.3-9ubuntu1 python3.4-minimal_3.4.3-9ubuntu1 python3.5_3.5.0-3 python3.5-dev_3.5.0-3 python3.5-minimal_3.5.0-3 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-python-biopython-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 shared-mime-info_1.3-1 systemd_225-1ubuntu9 systemd-sysv_225-1ubuntu9 sysv-rc_2.88dsf-59.2ubuntu2 sysvinit-utils_2.88dsf-59.2ubuntu2 t-coffee_11.00.8cbe486-1 tar_1.27.1-2 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_225-1ubuntu9 util-linux_2.26.2-6ubuntu3 wise_2.4.1-17 wise-data_2.4.1-17 x11-common_1:7.7+7ubuntu4 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Fri Oct 23 19:46:22 2015 UTC using RSA key ID 778FA6F5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python-biopython_1.65+dfsg-1build1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.65+dfsg dpkg-source: info: unpacking python-biopython_1.65+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.65+dfsg-1build1.debian.tar.xz dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying fix_broken_test.patch dpkg-source: info: applying privacy_breach.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«BUILDDIR»/python-biopython-1.65+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«BUILDDIR»/python-biopython-1.65+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.65+dfsg-1build1 dpkg-buildpackage: source distribution xenial dpkg-source --before-build python-biopython-1.65+dfsg dpkg-buildpackage: host architecture ppc64el fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 2.7 --dir . I: pybuild base:170: python2.7 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-ppc64le' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p "3.4 3.5" --dir . I: pybuild base:170: python3.4 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build' (and everything under it) 'build/bdist.linux-ppc64le' does not exist -- can't clean it 'build/scripts-3.4' does not exist -- can't clean it I: pybuild base:170: python3.5 setup.py clean running clean removing '/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build' (and everything under it) 'build/bdist.linux-ppc64le' does not exist -- can't clean it 'build/scripts-3.5' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg' dh_clean -O--buildsystem=pybuild rm -f debian/python-biopython.substvars rm -f debian/python-biopython.*.debhelper rm -rf debian/python-biopython/ rm -f debian/python3-biopython.substvars rm -f debian/python3-biopython.*.debhelper rm -rf debian/python3-biopython/ rm -f debian/python-biopython-doc.substvars rm -f debian/python-biopython-doc.*.debhelper rm -rf debian/python-biopython-doc/ rm -f debian/python-biopython-sql.substvars rm -f debian/python-biopython-sql.*.debhelper rm -rf debian/python-biopython-sql/ rm -f debian/python3-biopython-sql.substvars rm -f debian/python3-biopython-sql.*.debhelper rm -rf debian/python3-biopython-sql/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f -- debian/tmp_tests rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild dh_testdir -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild pybuild --configure -i python{version} -p 2.7 --dir . I: pybuild base:170: python2.7 setup.py config running config pybuild --configure -i python{version} -p "3.4 3.5" --dir . I: pybuild base:170: python3.4 setup.py config running config I: pybuild base:170: python3.5 setup.py config running config dh_auto_build -a -O--buildsystem=pybuild pybuild --build -i python{version} -p 2.7 --dir . I: pybuild base:170: /usr/bin/python setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> 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/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build creating build/temp.linux-ppc64le-2.7 creating build/temp.linux-ppc64le-2.7/Bio powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.linux-ppc64le-2.7/Bio/cpairwise2module.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/cpairwise2.so building 'Bio.trie' extension powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/triemodule.c -o build/temp.linux-ppc64le-2.7/Bio/triemodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python2.7 -c Bio/trie.c -o build/temp.linux-ppc64le-2.7/Bio/trie.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/triemodule.o build/temp.linux-ppc64le-2.7/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/trie.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-ppc64le-2.7/Bio/Nexus powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.linux-ppc64le-2.7/Bio/Nexus/cnexus.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Nexus/cnexus.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-ppc64le-2.7/Bio/Cluster powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.linux-ppc64le-2.7/Bio/Cluster/clustermodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.linux-ppc64le-2.7/Bio/Cluster/cluster.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/Cluster/clustermodule.o build/temp.linux-ppc64le-2.7/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-ppc64le-2.7/Bio/KDTree powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.linux-ppc64le-2.7/Bio/KDTree/KDTree.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-ppc64le-2.7/Bio/KDTree/KDTreemodule.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/KDTree/KDTree.o build/temp.linux-ppc64le-2.7/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-ppc64le-2.7/Bio/Motif powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/Motif/_pwm.c -o build/temp.linux-ppc64le-2.7/Bio/Motif/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Motif/_pwm.so building 'Bio.motifs._pwm' extension creating build/temp.linux-ppc64le-2.7/Bio/motifs powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c Bio/motifs/_pwm.c -o build/temp.linux-ppc64le-2.7/Bio/motifs/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-2.7/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/_pwm.so pybuild --build -i python{version} -p "3.4 3.5" --dir . I: pybuild base:170: /usr/bin/python3.4 setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> 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Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-ppc64le-3.4 creating build/temp.linux-ppc64le-3.4/Bio powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/cpairwise2module.c -o build/temp.linux-ppc64le-3.4/Bio/cpairwise2module.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/cpairwise2.cpython-34m.so building 'Bio.trie' extension powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/triemodule.c -o build/temp.linux-ppc64le-3.4/Bio/triemodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.4m -c Bio/trie.c -o build/temp.linux-ppc64le-3.4/Bio/trie.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/triemodule.o build/temp.linux-ppc64le-3.4/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/trie.cpython-34m.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-ppc64le-3.4/Bio/Nexus powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.4m -c Bio/Nexus/cnexus.c -o build/temp.linux-ppc64le-3.4/Bio/Nexus/cnexus.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Nexus/cnexus.cpython-34m.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-ppc64le-3.4/Bio/Cluster powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/clustermodule.c -o build/temp.linux-ppc64le-3.4/Bio/Cluster/clustermodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Cluster/cluster.c -o build/temp.linux-ppc64le-3.4/Bio/Cluster/cluster.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/Cluster/clustermodule.o build/temp.linux-ppc64le-3.4/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Cluster/cluster.cpython-34m.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-ppc64le-3.4/Bio/KDTree powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTree.c -o build/temp.linux-ppc64le-3.4/Bio/KDTree/KDTree.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-ppc64le-3.4/Bio/KDTree/KDTreemodule.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/KDTree/KDTree.o build/temp.linux-ppc64le-3.4/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/KDTree/_CKDTree.cpython-34m.so building 'Bio.Motif._pwm' extension creating build/temp.linux-ppc64le-3.4/Bio/Motif powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/Motif/_pwm.c -o build/temp.linux-ppc64le-3.4/Bio/Motif/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Motif/_pwm.cpython-34m.so building 'Bio.motifs._pwm' extension creating build/temp.linux-ppc64le-3.4/Bio/motifs powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.4m -c Bio/motifs/_pwm.c -o build/temp.linux-ppc64le-3.4/Bio/motifs/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.4/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/_pwm.cpython-34m.so I: pybuild base:170: /usr/bin/python3 setup.py build running build running build_py creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/ParserSupport.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/File.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/LogisticRegression.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/triefind.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/SeqFeature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/Index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/bgzf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/MaxEntropy.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/pairwise2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/SeqRecord.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/NaiveBayes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/Seq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/kNN.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/DocSQL.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio copying Bio/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/AlignInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/Generic.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align copying Bio/Align/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/AlignIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Alphabet creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Application copying Bio/Application/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Application creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast copying Bio/Blast/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Blast creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/CAPS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/codonalphabet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign copying Bio/codonalign/chisq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/codonalign creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Compass copying Bio/Compass/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Compass creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Crystal copying Bio/Crystal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Crystal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/IUPACData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/SCOPData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data copying Bio/Data/CodonTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Data creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Emboss creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/ExPASy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/FSSP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/Evolver.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA copying Bio/GA/Organism.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Crossover creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Mutation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Repair creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GA/Selection creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo copying Bio/Geo/Record.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo copying Bio/Geo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Geo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Graphics/GenomeDiagram creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/Trainer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/Utilities.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/HMM creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG copying Bio/KEGG/REST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Compound creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Enzyme creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/Map creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KEGG/KGML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Medline copying Bio/Medline/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Medline creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/Thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif copying Bio/Motif/_Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Parsers creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/mast.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/matrix.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/transfac.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/meme.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs copying Bio/motifs/thresholds.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications copying Bio/motifs/applications/_alignace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/jaspar creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/BackPropagation creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NeuralNetwork/Gene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/xpktools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/NMR creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Pathway/Rep creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Residue.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Vector.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Structure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Chain.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Model.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Dice.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/DSSP.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Selection.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PSEA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Atom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB copying Bio/PDB/Entity.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/Async creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/FDist creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/GenePop creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Restriction creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Des.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/three_to_one_dict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SCOP creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/_model creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/BlastIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/HmmerIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SearchIO/ExonerateIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/_convert.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Sequencing/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics copying Bio/Statistics/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics copying Bio/Statistics/lowess.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Statistics creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SubsMat creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SVDSuperimposer creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SwissProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/TogoWS creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_io.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/Applications creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Phylo/PAML creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniGene creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/UniProt creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/psw.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise copying Bio/Wise/dnal.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Wise creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k copying Bio/_py3k/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k copying Bio/_py3k/_ordereddict.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/_py3k creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/DBUtils.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/Loader.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/BioSeq.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL copying BioSQL/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy copying Bio/Affy/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy copying Bio/Affy/CelFile.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Affy creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree copying Bio/KDTree/KDTree.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree copying Bio/KDTree/__init__.py -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> 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Bio/Entrez/DTDs/mathmlsetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Entrez/DTDs creating /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-ppc64le-3.5 creating build/temp.linux-ppc64le-3.5/Bio powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/cpairwise2module.c -o build/temp.linux-ppc64le-3.5/Bio/cpairwise2module.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/cpairwise2module.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/cpairwise2.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.trie' extension powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/triemodule.c -o build/temp.linux-ppc64le-3.5/Bio/triemodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -IBio -I/usr/include/python3.5m -c Bio/trie.c -o build/temp.linux-ppc64le-3.5/Bio/trie.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/triemodule.o build/temp.linux-ppc64le-3.5/Bio/trie.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/trie.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-ppc64le-3.5/Bio/Nexus powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.5m -c Bio/Nexus/cnexus.c -o build/temp.linux-ppc64le-3.5/Bio/Nexus/cnexus.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/Nexus/cnexus.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Nexus/cnexus.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-ppc64le-3.5/Bio/Cluster powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/clustermodule.c -o build/temp.linux-ppc64le-3.5/Bio/Cluster/clustermodule.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Cluster/cluster.c -o build/temp.linux-ppc64le-3.5/Bio/Cluster/cluster.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/Cluster/clustermodule.o build/temp.linux-ppc64le-3.5/Bio/Cluster/cluster.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Cluster/cluster.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-ppc64le-3.5/Bio/KDTree powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTree.c -o build/temp.linux-ppc64le-3.5/Bio/KDTree/KDTree.o powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-ppc64le-3.5/Bio/KDTree/KDTreemodule.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/KDTree/KDTree.o build/temp.linux-ppc64le-3.5/Bio/KDTree/KDTreemodule.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/KDTree/_CKDTree.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.Motif._pwm' extension creating build/temp.linux-ppc64le-3.5/Bio/Motif powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/Motif/_pwm.c -o build/temp.linux-ppc64le-3.5/Bio/Motif/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/Motif/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Motif/_pwm.cpython-35m-powerpc64le-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-ppc64le-3.5/Bio/motifs powerpc64le-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.5m -c Bio/motifs/_pwm.c -o build/temp.linux-ppc64le-3.5/Bio/motifs/_pwm.o powerpc64le-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O3 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 build/temp.linux-ppc64le-3.5/Bio/motifs/_pwm.o -o /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/_pwm.cpython-35m-powerpc64le-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/«BUILDDIR»/python-biopython-1.65+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_DFDist PopGen_FDist PopGen_GenePop PopGen_GenePop_EasyController PopGen_SimCoal XXmotif_tool BWA_tool raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 GenomeDiagram Fasttree_tool Mafft_tool Tutorial ColorSpiral trie samtools_tool \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 2.7 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir . I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/home python2.7 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_2.7/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ---------------------------------------------------------------------- Ran 217 tests in 134.983 seconds Skipping any tests requiring internet access Python version: 2.7.10 (default, Oct 14 2015, 16:09:02) [GCC 5.2.1 20151010] Operating system: posix linux2 pybuild --test -i python{version} -p "3.4 3.5" --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" --dir . I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/home python3.4 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/BioSQL/Loader.py:810: BiopythonWarning: order location operators are not fully supported % feature.location_operator, BiopythonWarning) ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... skipping. Install MySQLdb if you want to use Bio.DocSQL. test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/GenBank/__init__.py:1017: BiopythonParserWarning: Dropping bond qualifier in feature location warnings.warn("Dropping bond qualifier in feature location", BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/InsdcIO.py:438: BiopythonWarning: Annotation 'flavin-adenine-dinucleotide-dependent-d-erythronate-4-phosphate-dehydrogena' too long for '' line BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_features ... ok test_SeqIO_index ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.4/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ---------------------------------------------------------------------- Ran 216 tests in 107.095 seconds Skipping any tests requiring internet access Python version: 3.4.3+ (default, Oct 14 2015, 16:03:50) [GCC 5.2.1 20151010] Operating system: posix linux I: pybuild base:170: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline test_Ace ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_Application ... ok test_BioSQL_mysql_connector ... skipping. Install mysql.connector if you want to use mysql with BioSQL test_BioSQL_sqlite3 ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/BioSQL/Loader.py:810: BiopythonWarning: order location operators are not fully supported % feature.location_operator, BiopythonWarning) ok test_CAPS ... ok test_CelFile ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Consensus ... ok test_Crystal ... ok test_DSSP_tool ... ok test_Dialign_tool ... ok test_DocSQL ... FAIL test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Enzyme ... ok test_FSSP ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GenBank ... ok test_GenBank_unittest ... ok test_GraphicsBitmaps ... ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KDTree ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_nographics ... ok test_KeyWList ... ok test_Location ... ok test_LogisticRegression ... ok test_MMCIF ... ok test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDB ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'N' for Atom (name=N) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'C' for Atom (name=CA) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:197: PDBConstructionWarning: Atom names ' CA ' and 'CA ' differ only in spaces at line 17. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/Atom.py:98: PDBConstructionWarning: Used element 'CA' for Atom (name=CA ) with given element '' warnings.warn(msg, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom N defined twice in residue at line 21. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:222: PDBConstructionWarning: WARNING: disordered atom found with blank altloc before line 33. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 4, ' ') redefined at line 43. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Blank altlocs in duplicate residue SER (' ', 4, ' ') at line 43. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 10, ' ') redefined at line 75. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 14, ' ') redefined at line 106. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 16, ' ') redefined at line 135. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 80, ' ') redefined at line 633. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/StructureBuilder.py:123: PDBConstructionWarning: WARNING: Residue (' ', 81, ' ') redefined at line 646. PDBConstructionWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/PDB/PDBParser.py:287: PDBConstructionWarning: PDBConstructionException: Atom O defined twice in residue at line 822. Exception ignored. Some atoms or residues may be missing in the data structure. % message, PDBConstructionWarning) ok test_PDB_KDTree ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_depend ... ok test_PopGen_FDist_nodepend ... ok test_PopGen_FastSimCoal ... skipping. Install fastsimcoal if you want to use Bio.PopGen.SimCoal.Controller.FastSimCoalController. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/GenBank/__init__.py:1017: BiopythonParserWarning: Dropping bond qualifier in feature location warnings.warn("Dropping bond qualifier in feature location", BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/InsdcIO.py:438: BiopythonWarning: Annotation 'flavin-adenine-dinucleotide-dependent-d-erythronate-4-phosphate-dehydrogena' too long for '' line BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Insdc ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) ok test_SeqIO_SeqXML ... ok test_SeqIO_convert ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:699: BiopythonWarning: Data loss - max PHRED quality 62 in Illumina FASTQ BiopythonWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/QualityIO.py:793: BiopythonWarning: Data loss - max Solexa quality 62 in Solexa FASTQ BiopythonWarning) ok test_SeqIO_features ... ok test_SeqIO_index ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqIO/_index.py:111: BiopythonParserWarning: Could not parse the SFF index: Unknown magic number b'.diy' in SFF index header: b'.diy1.00' BiopythonParserWarning) ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_bgzf ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_lowess ... ok test_motifs ... ok test_pairwise2 ... ok test_phyml_tool ... ok test_prodoc ... ok test_prosite1 ... ok test_prosite2 ... ok test_psw ... ok test_py3k ... ok test_seq ... ok test_translate ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/Align/Generic.py:55: BiopythonDeprecationWarning: With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython. warnings.warn("With the introduction of the MultipleSeqAlignment class in Bio.Align, this base class is deprecated and is likely to be removed in a future release of Biopython.", Bio.BiopythonDeprecationWarning) ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Alphabet docstring test ... ok Bio.Application docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.GenBank docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.Motif docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs.applications._alignace docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:54: BiopythonDeprecationWarning: The AlignACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/motifs/applications/_alignace.py:122: BiopythonDeprecationWarning: The CompareACE application wrapper is deprecated and is likely to be removed in a future release of Biopython, since an up to date version of the AlignACE software cannot be obtained anymore. If you have a copy of AlignACE 4, please consider contacting the Biopython developers. developers.""", BiopythonDeprecationWarning) ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/SeqUtils/__init__.py:560: BiopythonDeprecationWarning: The quick_FASTA_reader has been deprecated and will be removed in a future release of Biopython. Please try function SimpleFastaParser from Bio.SeqIO.FastaIO instead. "instead.", BiopythonDeprecationWarning) ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.psw docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Statistics.lowess docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Selection docstring test ... ok ====================================================================== ERROR: test_DocSQL (unittest.loader._FailedTest) ---------------------------------------------------------------------- ImportError: Failed to import test module: test_DocSQL Traceback (most recent call last): File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/DocSQL.py", line 33, in import MySQLdb ImportError: No module named 'MySQLdb' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/usr/lib/python3.5/unittest/loader.py", line 153, in loadTestsFromName module = __import__(module_name) File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests/test_DocSQL.py", line 7, in import Bio.DocSQL File "/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Bio/DocSQL.py", line 35, in raise MissingPythonDependencyError("Install MySQLdb if you want to use " Bio.MissingPythonDependencyError: Install MySQLdb if you want to use Bio.DocSQL. ---------------------------------------------------------------------- Ran 216 tests in 104.687 seconds FAILED (failures = 1) Skipping any tests requiring internet access Python version: 3.5.0+ (default, Oct 11 2015, 09:05:38) [GCC 5.2.1 20151010] Operating system: posix linux E: pybuild pybuild:262: test: plugin custom failed with: exit code=1: set -e; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home; \ mkdir -p /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc; \ cp -a Doc/examples/nmr /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Doc/examples; \ cp -a Tests /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build; \ cd /«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/«BUILDDIR»/python-biopython-1.65+dfsg/.pybuild/pythonX.Y_3.5/build/home python3.5 run_tests.py --offline dh_auto_test: pybuild --test -i python{version} -p 3.4 3.5 --test --system=custom --test-args=set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/examples/nmr {build_dir}/Doc/examples; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline --dir . returned exit code 13 make[1]: *** [override_dh_auto_test] Error 25 debian/rules:67: recipe for target 'override_dh_auto_test' failed make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.65+dfsg' make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 debian/rules:49: recipe for target 'build-arch' failed ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151023-1956 Finished ──────── E: Build failure (dpkg-buildpackage died) ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: ppc64el Build-Space: 233692 Build-Time: 374 Distribution: xenial-proposed Fail-Stage: build Host Architecture: ppc64el Install-Time: 83 Job: python-biopython_1.65+dfsg-1build1.dsc Machine Architecture: ppc64el Package: python-biopython Package-Time: 458 Source-Version: 1.65+dfsg-1build1 Space: 233692 Status: attempted Version: 1.65+dfsg-1build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151023-1956 Build needed 00:07:38, 233692k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8175468'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8175468/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8175468'] Unmounting chroot for build PACKAGEBUILD-8175468... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8175468'] Removing build PACKAGEBUILD-8175468