RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216', '/home/buildd/filecache-default/1ef177161c3cb073e66bf1550931c6fbaa0a94b0'] Synching the system clock with the buildd NTP service... 8 Jun 19:50:12 ntpdate[18779]: adjust time server 10.211.37.1 offset 0.107898 sec Unpacking chroot for build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216'] Mounting chroot for build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216', 'universe'] Attempting OGRE for universe in build-eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216', 'deb http://ftpmaster.internal/ubuntu lucid main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu lucid-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu lucid-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu lucid-backports main restricted universe multiverse'] Overriding sources.list in build-eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216'] Updating debian chroot for build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid-security Release.gpg [189B] Get:3 http://ftpmaster.internal lucid-updates Release.gpg [189B] Get:4 http://ftpmaster.internal lucid-backports Release.gpg [189B] Get:5 http://ftpmaster.internal lucid Release [57.2kB] Get:6 http://ftpmaster.internal lucid-security Release [38.5kB] Get:7 http://ftpmaster.internal lucid-updates Release [38.5kB] Get:8 http://ftpmaster.internal lucid-backports Release [32.5kB] Get:9 http://ftpmaster.internal lucid/main Packages [1386kB] Get:10 http://ftpmaster.internal lucid/restricted Packages [6208B] Get:11 http://ftpmaster.internal lucid/universe Packages [5448kB] Get:12 http://ftpmaster.internal lucid/multiverse Packages [180kB] Get:13 http://ftpmaster.internal lucid-security/main Packages [32.5kB] Get:14 http://ftpmaster.internal lucid-security/restricted Packages [14B] Get:15 http://ftpmaster.internal lucid-security/universe Packages [12.9kB] Get:16 http://ftpmaster.internal lucid-security/multiverse Packages [14B] Get:17 http://ftpmaster.internal lucid-updates/main Packages [193kB] Get:18 http://ftpmaster.internal lucid-updates/restricted Packages [2102B] Get:19 http://ftpmaster.internal lucid-updates/universe Packages [46.5kB] Get:20 http://ftpmaster.internal lucid-updates/multiverse Packages [632B] Get:21 http://ftpmaster.internal lucid-backports/main Packages [1322B] Get:22 http://ftpmaster.internal lucid-backports/restricted Packages [14B] Get:23 http://ftpmaster.internal lucid-backports/universe Packages [14.1kB] Get:24 http://ftpmaster.internal lucid-backports/multiverse Packages [774B] Fetched 7491kB in 8s (933kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https libc-bin libc-dev-bin libc6 libc6-dev libglib2.0-0 linux-libc-dev mountall pkg-create-dbgsym tzdata 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0MB of archives. After this operation, 20.5kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev tzdata apt libglib2.0-0 mountall apt-transport-https pkg-create-dbgsym Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid-security/main libc-dev-bin 2.11.1-0ubuntu7.1 [213kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid-security/main libc6-dev 2.11.1-0ubuntu7.1 [4839kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid-security/main libc-bin 2.11.1-0ubuntu7.1 [723kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid-security/main libc6 2.11.1-0ubuntu7.1 [3779kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid-security/main linux-libc-dev 2.6.32-22.36 [771kB] Get:6 http://ftpmaster.internal/ubuntu/ lucid-updates/main tzdata 2010j-0ubuntu0.10.04 [679kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid-updates/main apt 0.7.25.3ubuntu9 [1810kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid-updates/main libglib2.0-0 2.24.1-0ubuntu1 [1029kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid-updates/main mountall 2.15 [51.5kB] Get:10 http://ftpmaster.internal/ubuntu/ lucid-updates/main apt-transport-https 0.7.25.3ubuntu9 [80.7kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid-updates/main pkg-create-dbgsym 0.43 [13.1kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0MB in 0s (21.0MB/s) (Reading database ... 13401 files and directories currently installed.) Preparing to replace libc-dev-bin 2.11.1-0ubuntu7 (using .../libc-dev-bin_2.11.1-0ubuntu7.1_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.11.1-0ubuntu7 (using .../libc6-dev_2.11.1-0ubuntu7.1_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.11.1-0ubuntu7 (using .../libc-bin_2.11.1-0ubuntu7.1_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.11.1-0ubuntu7.1) ... (Reading database ... 13401 files and directories currently installed.) Preparing to replace libc6 2.11.1-0ubuntu7 (using .../libc6_2.11.1-0ubuntu7.1_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.11.1-0ubuntu7.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13401 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.32-21.32 (using .../linux-libc-dev_2.6.32-22.36_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace tzdata 2010i-1 (using .../tzdata_2010j-0ubuntu0.10.04_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2010j-0ubuntu0.10.04) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Jun 8 18:50:46 UTC 2010. Universal Time is now: Tue Jun 8 18:50:46 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13404 files and directories currently installed.) Preparing to replace apt 0.7.25.3ubuntu7 (using .../apt_0.7.25.3ubuntu9_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.7.25.3ubuntu9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13404 files and directories currently installed.) Preparing to replace libglib2.0-0 2.24.0-0ubuntu4 (using .../libglib2.0-0_2.24.1-0ubuntu1_i386.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace mountall 2.14 (using .../mountall_2.15_i386.deb) ... Unpacking replacement mountall ... Preparing to replace apt-transport-https 0.7.25.3ubuntu7 (using .../apt-transport-https_0.7.25.3ubuntu9_i386.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace pkg-create-dbgsym 0.42 (using .../pkg-create-dbgsym_0.43_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Setting up libc-dev-bin (2.11.1-0ubuntu7.1) ... Setting up linux-libc-dev (2.6.32-22.36) ... Setting up libc6-dev (2.11.1-0ubuntu7.1) ... Setting up libglib2.0-0 (2.24.1-0ubuntu1) ... Setting up mountall (2.15) ... Setting up apt-transport-https (0.7.25.3ubuntu9) ... Setting up pkg-create-dbgsym (0.43) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216', 'lucid-backports', '--nolog', '--batch', '--archive=ubuntu', '--dist=lucid-backports', '-A', '--purpose=PRIMARY', '--comp=universe', 'python-biopython_1.54-1~lucid1.dsc'] Initiating build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216 with 2 processor cores. Automatic build of python-biopython_1.54-1~lucid1 on rothera by sbuild/i386 1.170.5 Build started at 20100608-1950 ****************************************************************************** python-biopython_1.54-1~lucid1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, python-reportlab, python-numpy, python-mysqldb, wise Checking for already installed source dependencies... debhelper: missing quilt: missing python-all-dev: missing flex: missing python-support: missing python-reportlab: missing python-numpy: missing python-mysqldb: missing wise: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt python-all-dev flex python-support python-reportlab python-numpy python-mysqldb wise Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils diffstat file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-central python-dev python2.6 python2.6-dev Suggested packages: wamerican wordlist whois vacation dh-make bison gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-profiler python-egenix-mxdatetime mysql-server-5.1 mysql-server python-mysqldb-dbg python-numpy-doc python-numpy-dbg python-nose pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.6-doc python2.6-profiler procmail graphviz wise-doc Recommended packages: curl wget lynx cvs libgpm2 xml-core libmail-sendmail-perl python-reportlab-accel python-renderpm python-imaging The following NEW packages will be installed: bsdmainutils debhelper diffstat file flex gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-all-dev python-central python-dev python-mysqldb python-numpy python-reportlab python-support python2.6 python2.6-dev quilt wise 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4MB of archives. After this operation, 83.7MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! m4 flex libmagic1 file libncursesw5 libsqlite3-0 mime-support python2.6 python python-central bsdmainutils gettext-base groff-base libxml2 man-db python-support html2text libcroco3 gettext intltool-debian po-debconf debhelper diffstat libgfortran3 libblas3gf liblapack3gf mysql-common libmysqlclient16 libpython2.6 python-all python2.6-dev python-dev python-all-dev python-mysqldb python-numpy python-reportlab quilt wise Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ lucid/main m4 1.4.13-3 [241kB] Get:2 http://ftpmaster.internal/ubuntu/ lucid/main flex 2.5.35-9 [244kB] Get:3 http://ftpmaster.internal/ubuntu/ lucid/main libmagic1 5.03-5ubuntu1 [392kB] Get:4 http://ftpmaster.internal/ubuntu/ lucid/main file 5.03-5ubuntu1 [47.4kB] Get:5 http://ftpmaster.internal/ubuntu/ lucid/main libncursesw5 5.7+20090803-2ubuntu3 [214kB] Get:6 http://ftpmaster.internal/ubuntu/ lucid/main libsqlite3-0 3.6.22-1 [294kB] Get:7 http://ftpmaster.internal/ubuntu/ lucid/main mime-support 3.48-1ubuntu1 [34.6kB] Get:8 http://ftpmaster.internal/ubuntu/ lucid/main python2.6 2.6.5-1ubuntu6 [2463kB] Get:9 http://ftpmaster.internal/ubuntu/ lucid/main python 2.6.5-0ubuntu1 [148kB] Get:10 http://ftpmaster.internal/ubuntu/ lucid/main python-central 0.6.15ubuntu1 [47.6kB] Get:11 http://ftpmaster.internal/ubuntu/ lucid/main bsdmainutils 8.0.1ubuntu1 [191kB] Get:12 http://ftpmaster.internal/ubuntu/ lucid/main gettext-base 0.17-8ubuntu3 [70.5kB] Get:13 http://ftpmaster.internal/ubuntu/ lucid/main groff-base 1.20.1-7 [1090kB] Get:14 http://ftpmaster.internal/ubuntu/ lucid/main libxml2 2.7.6.dfsg-1ubuntu1 [827kB] Get:15 http://ftpmaster.internal/ubuntu/ lucid/main man-db 2.5.7-2 [1082kB] Get:16 http://ftpmaster.internal/ubuntu/ lucid/main python-support 1.0.4ubuntu1 [32.0kB] Get:17 http://ftpmaster.internal/ubuntu/ lucid/main html2text 1.3.2a-14build1 [101kB] Get:18 http://ftpmaster.internal/ubuntu/ lucid/main libcroco3 0.6.2-1 [92.5kB] Get:19 http://ftpmaster.internal/ubuntu/ lucid/main gettext 0.17-8ubuntu3 [1732kB] Get:20 http://ftpmaster.internal/ubuntu/ lucid/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:21 http://ftpmaster.internal/ubuntu/ lucid/main po-debconf 1.0.16 [224kB] Get:22 http://ftpmaster.internal/ubuntu/ lucid/main debhelper 7.4.15ubuntu1 [461kB] Get:23 http://ftpmaster.internal/ubuntu/ lucid/main diffstat 1.47-1build1 [23.6kB] Get:24 http://ftpmaster.internal/ubuntu/ lucid/main libgfortran3 4.4.3-4ubuntu5 [240kB] Get:25 http://ftpmaster.internal/ubuntu/ lucid/main libblas3gf 1.2-2build1 [211kB] Get:26 http://ftpmaster.internal/ubuntu/ lucid/main liblapack3gf 3.2.1-2 [3089kB] Get:27 http://ftpmaster.internal/ubuntu/ lucid-updates/main mysql-common 5.1.41-3ubuntu12.1 [97.2kB] Get:28 http://ftpmaster.internal/ubuntu/ lucid-updates/main libmysqlclient16 5.1.41-3ubuntu12.1 [1931kB] Get:29 http://ftpmaster.internal/ubuntu/ lucid/main libpython2.6 2.6.5-1ubuntu6 [986kB] Get:30 http://ftpmaster.internal/ubuntu/ lucid/main python-all 2.6.5-0ubuntu1 [882B] Get:31 http://ftpmaster.internal/ubuntu/ lucid/main python2.6-dev 2.6.5-1ubuntu6 [4399kB] Get:32 http://ftpmaster.internal/ubuntu/ lucid/main python-dev 2.6.5-0ubuntu1 [970B] Get:33 http://ftpmaster.internal/ubuntu/ lucid/main python-all-dev 2.6.5-0ubuntu1 [898B] Get:34 http://ftpmaster.internal/ubuntu/ lucid/main python-mysqldb 1.2.2-10build1 [76.6kB] Get:35 http://ftpmaster.internal/ubuntu/ lucid/main python-numpy 1:1.3.0-3build1 [1244kB] Get:36 http://ftpmaster.internal/ubuntu/ lucid/main python-reportlab 2.4-1 [543kB] Get:37 http://ftpmaster.internal/ubuntu/ lucid/main quilt 0.48-5 [318kB] Get:38 http://ftpmaster.internal/ubuntu/ lucid/universe wise 2.4.1-8 [4163kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.4MB in 1s (19.6MB/s) Selecting previously deselected package m4. (Reading database ... 13404 files and directories currently installed.) Unpacking m4 (from .../archives/m4_1.4.13-3_i386.deb) ... Selecting previously deselected package flex. Unpacking flex (from .../flex_2.5.35-9_i386.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-5ubuntu1_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-5ubuntu1_i386.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090803-2ubuntu3_i386.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.22-1_i386.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.5-1ubuntu6_i386.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.5-0ubuntu1_all.deb) ... Selecting previously deselected package python-central. Unpacking python-central (from .../python-central_0.6.15ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.1ubuntu1_i386.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu3_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-7_i386.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.6.dfsg-1ubuntu1_i386.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.7-2_i386.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.4ubuntu1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14build1_i386.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-8ubuntu3_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.15ubuntu1_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1build1_i386.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.3-4ubuntu5_i386.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-2build1_i386.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-2_i386.deb) ... Selecting previously deselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.1.41-3ubuntu12.1_all.deb) ... Selecting previously deselected package libmysqlclient16. Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.41-3ubuntu12.1_i386.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.5-1ubuntu6_i386.deb) ... Selecting previously deselected package python-all. Unpacking python-all (from .../python-all_2.6.5-0ubuntu1_all.deb) ... Selecting previously deselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.5-1ubuntu6_i386.deb) ... Selecting previously deselected package python-dev. Unpacking python-dev (from .../python-dev_2.6.5-0ubuntu1_all.deb) ... Selecting previously deselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.6.5-0ubuntu1_all.deb) ... Selecting previously deselected package python-mysqldb. Unpacking python-mysqldb (from .../python-mysqldb_1.2.2-10build1_i386.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.3.0-3build1_i386.deb) ... Selecting previously deselected package python-reportlab. Unpacking python-reportlab (from .../python-reportlab_2.4-1_all.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.48-5_all.deb) ... Selecting previously deselected package wise. Unpacking wise (from .../archives/wise_2.4.1-8_i386.deb) ... Setting up m4 (1.4.13-3) ... Setting up flex (2.5.35-9) ... Setting up libmagic1 (5.03-5ubuntu1) ... Setting up file (5.03-5ubuntu1) ... Setting up libncursesw5 (5.7+20090803-2ubuntu3) ... Setting up libsqlite3-0 (3.6.22-1) ... Setting up mime-support (3.48-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.5-1ubuntu6) ... Setting up python (2.6.5-0ubuntu1) ... Setting up python-central (0.6.15ubuntu1) ... Setting up bsdmainutils (8.0.1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu3) ... Setting up groff-base (1.20.1-7) ... Setting up libxml2 (2.7.6.dfsg-1ubuntu1) ... Setting up man-db (2.5.7-2) ... Building database of manual pages ... Setting up python-support (1.0.4ubuntu1) ... Setting up html2text (1.3.2a-14build1) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.15ubuntu1) ... Setting up diffstat (1.47-1build1) ... Setting up libgfortran3 (4.4.3-4ubuntu5) ... Setting up libblas3gf (1.2-2build1) ... Setting up liblapack3gf (3.2.1-2) ... Setting up mysql-common (5.1.41-3ubuntu12.1) ... Setting up libmysqlclient16 (5.1.41-3ubuntu12.1) ... Setting up libpython2.6 (2.6.5-1ubuntu6) ... Setting up python-all (2.6.5-0ubuntu1) ... Setting up python2.6-dev (2.6.5-1ubuntu6) ... Setting up python-dev (2.6.5-0ubuntu1) ... Setting up python-all-dev (2.6.5-0ubuntu1) ... Setting up python-mysqldb (1.2.2-10build1) ... Setting up python-numpy (1:1.3.0-3build1) ... Setting up python-reportlab (2.4-1) ... Setting up quilt (0.48-5) ... Setting up wise (2.4.1-8) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Processing triggers for python-central ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.11.1-0ubuntu7.1 make_3.81-7ubuntu1 dpkg-dev_1.15.5.6ubuntu4 g++-4.4_4.4.3-4ubuntu5 gcc-4.4_4.4.3-4ubuntu5 binutils_2.20.1-3ubuntu5 libstdc++6_4.4.3-4ubuntu5 libstdc++6-4.4-dev_4.4.3-4ubuntu5 ------------------------------------------------------------------------------ gpgv: Signature made Thu Jun 3 11:04:33 2010 UTC using DSA key ID 404825E7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python-biopython_1.54-1~lucid1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.54 dpkg-source: info: unpacking python-biopython_1.54.orig.tar.gz dpkg-source: info: applying python-biopython_1.54-1~lucid1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.54-1~lucid1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot python2.6 setup.py clean running clean rm -f -r debian/python2.6-tmp dh_testdir dh_testroot dh_clean rm -f build-stamp rm -f Tests/*.pyc rm -f Tests/Graphics/*.eps rm -f Tests/Graphics/*.pdf rm -f Tests/dump rm -f Tests/NeuralNetwork/patternio.txt rm -f -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx rm -f -r build debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 01-enable-mmCIF.patch patching file setup.py Hunk #1 succeeded at 294 (offset -46 lines). Now at patch 01-enable-mmCIF.patch touch debian/stamp-patched echo i386 i386 yes | python2.6 setup.py build running build running build_py creating build creating build/lib.linux-i686-2.6 creating build/lib.linux-i686-2.6/Bio copying Bio/Transcribe.py -> build/lib.linux-i686-2.6/Bio copying Bio/pairwise2.py -> build/lib.linux-i686-2.6/Bio copying Bio/MarkovModel.py -> build/lib.linux-i686-2.6/Bio copying Bio/Search.py -> build/lib.linux-i686-2.6/Bio copying Bio/EZRetrieve.py -> build/lib.linux-i686-2.6/Bio copying Bio/DocSQL.py -> build/lib.linux-i686-2.6/Bio copying Bio/mathfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/utils.py -> build/lib.linux-i686-2.6/Bio copying Bio/SeqFeature.py -> build/lib.linux-i686-2.6/Bio copying Bio/Translate.py -> build/lib.linux-i686-2.6/Bio copying Bio/HotRand.py -> build/lib.linux-i686-2.6/Bio copying Bio/MaxEntropy.py -> build/lib.linux-i686-2.6/Bio copying Bio/File.py -> build/lib.linux-i686-2.6/Bio copying Bio/Seq.py -> build/lib.linux-i686-2.6/Bio copying Bio/FilteredReader.py -> build/lib.linux-i686-2.6/Bio copying Bio/stringfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/__init__.py -> build/lib.linux-i686-2.6/Bio copying Bio/ParserSupport.py -> build/lib.linux-i686-2.6/Bio copying Bio/Index.py -> build/lib.linux-i686-2.6/Bio copying Bio/NetCatch.py -> build/lib.linux-i686-2.6/Bio copying Bio/SeqRecord.py -> build/lib.linux-i686-2.6/Bio copying Bio/NaiveBayes.py -> build/lib.linux-i686-2.6/Bio copying Bio/listfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/triefind.py -> build/lib.linux-i686-2.6/Bio copying Bio/LogisticRegression.py -> build/lib.linux-i686-2.6/Bio copying Bio/kNN.py -> build/lib.linux-i686-2.6/Bio copying Bio/PropertyManager.py -> build/lib.linux-i686-2.6/Bio creating build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/FormatConvert.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/Generic.py -> build/lib.linux-i686-2.6/Bio/Align creating build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-i686-2.6/Bio/Align/Applications creating build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO creating build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Motif.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/__init__.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Parser.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/CompareAceStandalone.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/AlignAceStandalone.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Applications.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Scanner.py -> build/lib.linux-i686-2.6/Bio/AlignAce creating build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> build/lib.linux-i686-2.6/Bio/Alphabet creating build/lib.linux-i686-2.6/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-i686-2.6/Bio/Application creating build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/Record.py -> build/lib.linux-i686-2.6/Bio/Blast creating build/lib.linux-i686-2.6/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-i686-2.6/Bio/CAPS creating build/lib.linux-i686-2.6/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-i686-2.6/Bio/Compass creating build/lib.linux-i686-2.6/Bio/Clustalw copying Bio/Clustalw/__init__.py -> build/lib.linux-i686-2.6/Bio/Clustalw creating build/lib.linux-i686-2.6/Bio/Crystal copying Bio/Crystal/__init__.py -> build/lib.linux-i686-2.6/Bio/Crystal creating build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-i686-2.6/Bio/Data creating build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-i686-2.6/Bio/Emboss creating build/lib.linux-i686-2.6/Bio/Encodings copying Bio/Encodings/IUPACEncoding.py -> build/lib.linux-i686-2.6/Bio/Encodings copying Bio/Encodings/__init__.py -> build/lib.linux-i686-2.6/Bio/Encodings creating build/lib.linux-i686-2.6/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-i686-2.6/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-i686-2.6/Bio/Entrez creating build/lib.linux-i686-2.6/Bio/Enzyme copying Bio/Enzyme/__init__.py -> build/lib.linux-i686-2.6/Bio/Enzyme creating build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-i686-2.6/Bio/ExPASy creating build/lib.linux-i686-2.6/Bio/Fasta copying Bio/Fasta/FastaAlign.py -> build/lib.linux-i686-2.6/Bio/Fasta copying Bio/Fasta/__init__.py -> build/lib.linux-i686-2.6/Bio/Fasta creating build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/__init__.py -> build/lib.linux-i686-2.6/Bio/FSSP creating build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/Evolver.py -> build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/__init__.py -> build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/Organism.py -> build/lib.linux-i686-2.6/Bio/GA creating build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover creating build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation creating build/lib.linux-i686-2.6/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-i686-2.6/Bio/GA/Repair creating build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> build/lib.linux-i686-2.6/Bio/GA/Selection creating build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/LocationParser.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-i686-2.6/Bio/GenBank creating build/lib.linux-i686-2.6/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-i686-2.6/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-i686-2.6/Bio/Geo creating build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/easy.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/GenericTools.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/__init__.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/binning.py -> build/lib.linux-i686-2.6/Bio/GFF creating build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-i686-2.6/Bio/Graphics creating build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram creating build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-i686-2.6/Bio/HMM creating build/lib.linux-i686-2.6/Bio/InterPro copying Bio/InterPro/__init__.py -> build/lib.linux-i686-2.6/Bio/InterPro creating build/lib.linux-i686-2.6/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG creating build/lib.linux-i686-2.6/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Compound creating build/lib.linux-i686-2.6/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Enzyme creating build/lib.linux-i686-2.6/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Map creating build/lib.linux-i686-2.6/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-i686-2.6/Bio/Medline creating build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/Motif.py -> build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/__init__.py -> build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/Parser.py -> build/lib.linux-i686-2.6/Bio/MEME creating build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/_Motif.py -> build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/Thresholds.py -> build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif creating build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers creating build/lib.linux-i686-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/_AlignAce.py -> build/lib.linux-i686-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif/Applications creating build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork creating build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation creating build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene creating build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-i686-2.6/Bio/Nexus creating build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-i686-2.6/Bio/NMR creating build/lib.linux-i686-2.6/Bio/Parsers copying Bio/Parsers/__init__.py -> build/lib.linux-i686-2.6/Bio/Parsers copying Bio/Parsers/spark.py -> build/lib.linux-i686-2.6/Bio/Parsers creating build/lib.linux-i686-2.6/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-i686-2.6/Bio/Pathway creating build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/HashSet.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep creating build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Vector.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-i686-2.6/Bio/PDB creating build/lib.linux-i686-2.6/Bio/PDB/mmCIF copying Bio/PDB/mmCIF/__init__.py -> build/lib.linux-i686-2.6/Bio/PDB/mmCIF creating build/lib.linux-i686-2.6/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen creating build/lib.linux-i686-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> build/lib.linux-i686-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/Async creating build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist creating build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop creating build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal creating build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/Prodoc.py -> build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/__init__.py -> build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/Pattern.py -> build/lib.linux-i686-2.6/Bio/Prosite creating build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/DNAUtils.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-i686-2.6/Bio/Restriction creating build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/__init__.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/RestrictionCompiler.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/Update.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update creating build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-i686-2.6/Bio/SCOP creating build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/_convert.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO creating build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-i686-2.6/Bio/SeqUtils creating build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-i686-2.6/Bio/Sequencing creating build/lib.linux-i686-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-i686-2.6/Bio/Sequencing/Applications creating build/lib.linux-i686-2.6/Bio/Statistics copying Bio/Statistics/__init__.py -> build/lib.linux-i686-2.6/Bio/Statistics copying Bio/Statistics/lowess.py -> build/lib.linux-i686-2.6/Bio/Statistics creating build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.linux-i686-2.6/Bio/SubsMat creating build/lib.linux-i686-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/SVDSuperimposer.py -> build/lib.linux-i686-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-i686-2.6/Bio/SVDSuperimposer creating build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/SProt.py -> build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-i686-2.6/Bio/SwissProt creating build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/_sugar.py -> build/lib.linux-i686-2.6/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.linux-i686-2.6/Bio/Phylo creating build/lib.linux-i686-2.6/Bio/UniGene copying Bio/UniGene/UniGene.py -> build/lib.linux-i686-2.6/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-i686-2.6/Bio/UniGene creating build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/psw.py -> build/lib.linux-i686-2.6/Bio/Wise creating build/lib.linux-i686-2.6/BioSQL copying BioSQL/__init__.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/Loader.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-i686-2.6/BioSQL creating build/lib.linux-i686-2.6/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-i686-2.6/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-i686-2.6/Bio/Affy creating build/lib.linux-i686-2.6/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-i686-2.6/Bio/Cluster creating build/lib.linux-i686-2.6/Bio/KDTree copying Bio/KDTree/__init__.py -> build/lib.linux-i686-2.6/Bio/KDTree copying Bio/KDTree/KDTree.py -> build/lib.linux-i686-2.6/Bio/KDTree creating build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs creating build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-i686-2.6 creating build/temp.linux-i686-2.6/Bio gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cpairwise2module.c -o build/temp.linux-i686-2.6/Bio/cpairwise2module.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/csupport.c -o build/temp.linux-i686-2.6/Bio/csupport.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cpairwise2module.o build/temp.linux-i686-2.6/Bio/csupport.o -o build/lib.linux-i686-2.6/Bio/cpairwise2.so building 'Bio.trie' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/triemodule.c -o build/temp.linux-i686-2.6/Bio/triemodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/trie.c -o build/temp.linux-i686-2.6/Bio/trie.o Bio/trie.c: In function 'Trie_set': Bio/trie.c:103: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:103: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:156: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 1 of 'strncpy' differ in signedness /usr/include/bits/string3.h:120: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 2 of 'strncpy' differ in signedness /usr/include/bits/string3.h:120: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'Trie_get': Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:235: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_get_approximate_transition': Bio/trie.c:268: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c: In function '_get_approximate_trie': Bio/trie.c:353: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:355: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:367: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:369: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c: In function 'Trie_has_prefix': Bio/trie.c:440: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:441: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_iterate_helper': Bio/trie.c:468: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:470: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_with_prefix_helper': Bio/trie.c:521: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:522: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:530: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_serialize_transition': Bio/trie.c:621: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_deserialize_transition': Bio/trie.c:708: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:708: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'test': Bio/trie.c:752: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:753: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:754: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:755: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:757: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:758: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:759: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:760: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:762: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:763: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:765: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:768: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:769: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/triemodule.o build/temp.linux-i686-2.6/Bio/trie.o -o build/lib.linux-i686-2.6/Bio/trie.so building 'Bio.cMarkovModel' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cMarkovModelmodule.c -o build/temp.linux-i686-2.6/Bio/cMarkovModelmodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/csupport.c -o build/temp.linux-i686-2.6/Bio/csupport.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cMarkovModelmodule.o build/temp.linux-i686-2.6/Bio/csupport.o -o build/lib.linux-i686-2.6/Bio/cMarkovModel.so building 'Bio.PDB.mmCIF.MMCIFlex' extension creating build/temp.linux-i686-2.6/Bio/PDB creating build/temp.linux-i686-2.6/Bio/PDB/mmCIF gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/lex.yy.c -o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/lex.yy.o mmcif.lex:52: warning: function declaration isn't a prototype lex.yy.c:1040: warning: 'yyunput' defined but not used lex.yy.c:1086: warning: 'input' defined but not used gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/MMCIFlexmodule.c -o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_open_file': Bio/PDB/mmCIF/MMCIFlexmodule.c:16: warning: implicit declaration of function 'mmcif_set_file' Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_get_token': Bio/PDB/mmCIF/MMCIFlexmodule.c:44: warning: implicit declaration of function 'mmcif_get_token' Bio/PDB/mmCIF/MMCIFlexmodule.c: At top level: Bio/PDB/mmCIF/MMCIFlexmodule.c:67: warning: function declaration isn't a prototype gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/PDB/mmCIF/lex.yy.o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o -lfl -o build/lib.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlex.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-i686-2.6/Bio/Nexus gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Nexus/cnexus.c -o build/temp.linux-i686-2.6/Bio/Nexus/cnexus.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Nexus/cnexus.o -o build/lib.linux-i686-2.6/Bio/Nexus/cnexus.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-i686-2.6/Bio/Cluster gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/clustermodule.c -o build/temp.linux-i686-2.6/Bio/Cluster/clustermodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/cluster.c -o build/temp.linux-i686-2.6/Bio/Cluster/cluster.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Cluster/clustermodule.o build/temp.linux-i686-2.6/Bio/Cluster/cluster.o -o build/lib.linux-i686-2.6/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-i686-2.6/Bio/KDTree gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTree.c -o build/temp.linux-i686-2.6/Bio/KDTree/KDTree.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-i686-2.6/Bio/KDTree/KDTreemodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/KDTree/KDTree.o build/temp.linux-i686-2.6/Bio/KDTree/KDTreemodule.o -o build/lib.linux-i686-2.6/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-i686-2.6/Bio/Motif gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Motif/_pwm.c -o build/temp.linux-i686-2.6/Bio/Motif/_pwm.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Motif/_pwm.o -o build/lib.linux-i686-2.6/Bio/Motif/_pwm.so touch build-stamp /usr/bin/fakeroot debian/rules binary echo i386 i386 yes | python2.6 setup.py build running build running build_py running build_ext touch build-stamp dh_testdir dh_testroot yes | python2.6 setup.py install --root /build/buildd/python-biopython-1.54/debian/python2.6-tmp --install-layout=deb running install running build running build_py running build_ext running install_lib creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6 creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Transcribe.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/pairwise2.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/MarkovModel.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Search.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/EZRetrieve.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/DocSQL.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/mathfns.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/utils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/SeqFeature.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Translate.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/HotRand.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/MaxEntropy.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/File.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Seq.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/FilteredReader.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/stringfns.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/ParserSupport.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Index.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/NetCatch.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/SeqRecord.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/NaiveBayes.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/listfns.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/triefind.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/LogisticRegression.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/kNN.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/PropertyManager.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/AlignInfo.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/FormatConvert.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/Generic.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Muscle.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_TCoffee.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Prank.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Dialign.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Clustalw.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Probcons.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Mafft.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/NexusIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/EmbossIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/ClustalIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/StockholmIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/FastaIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/Interfaces.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/PhylipIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Motif.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Parser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/CompareAceStandalone.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/AlignAceStandalone.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Applications.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Scanner.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/IUPAC.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/Reduced.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application copying build/lib.linux-i686-2.6/Bio/Application/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIStandalone.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIWWW.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIXML.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/Applications.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/ParseBlastTable.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/Record.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS copying build/lib.linux-i686-2.6/Bio/CAPS/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass copying build/lib.linux-i686-2.6/Bio/Compass/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw copying build/lib.linux-i686-2.6/Bio/Clustalw/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal copying build/lib.linux-i686-2.6/Bio/Crystal/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/IUPACData.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/CodonTable.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/PrimerSearch.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/Primer3.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/Applications.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-i686-2.6/Bio/Encodings/IUPACEncoding.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-i686-2.6/Bio/Encodings/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-i686-2.6/Bio/Entrez/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-i686-2.6/Bio/Entrez/Parser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pmc-1.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/htmltable.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/taxon.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/elink_020122.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/mathml2.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/egquery.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSpell.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eLink_020511.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/archivearticle.dtd -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isogrk2.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isotech.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/math.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/para.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isolat1.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/notat.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isogrk4.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/backmatter.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/modules.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/display.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isocyr1.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isolat2.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/section.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/mmlextra.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/phrase.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/format.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isonum.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamsr.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamsa.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isogrk1.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isomopf.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/link.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/default-classes.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/list.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/default-mixes.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isobox.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamsb.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/articlemeta.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/chars.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamsc.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isomscr.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isodia.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/journalmeta.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isocyr2.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isopub.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/common.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isomfrk.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isogrk3.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/mmlalias.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/references.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamso.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/isoamsn.ent -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme copying build/lib.linux-i686-2.6/Bio/Enzyme/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Enzyme.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Prodoc.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Prosite.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/ScanProsite.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-i686-2.6/Bio/Fasta/FastaAlign.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-i686-2.6/Bio/Fasta/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/fssp_rec.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/FSSPTools.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/Evolver.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/Organism.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/GeneralPoint.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/Point.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/TwoPoint.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/General.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/Uniform.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/Simple.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/General.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-i686-2.6/Bio/GA/Repair/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-i686-2.6/Bio/GA/Repair/Stabilizing.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Diversity.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/RouletteWheel.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Abstract.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Tournament.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/utils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/LocationParser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/Scanner.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/Record.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-i686-2.6/Bio/Geo/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-i686-2.6/Bio/Geo/Record.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/easy.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/GenericTools.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/binning.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/DisplayRepresentation.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/Distribution.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/BasicChromosome.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/Comparative.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Track.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/MarkovModel.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/Utilities.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/DynamicProgramming.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/Trainer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro copying build/lib.linux-i686-2.6/Bio/InterPro/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG copying build/lib.linux-i686-2.6/Bio/KEGG/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound copying build/lib.linux-i686-2.6/Bio/KEGG/Compound/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme copying build/lib.linux-i686-2.6/Bio/KEGG/Enzyme/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map copying build/lib.linux-i686-2.6/Bio/KEGG/Map/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline copying build/lib.linux-i686-2.6/Bio/Medline/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/Motif.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/Parser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/_Motif.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/Thresholds.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/AlignAce.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/MAST.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/MEME.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/Applications/_AlignAce.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/Applications/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/_pwm.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Training.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/StopTraining.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/Layer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/Network.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Motif.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Schema.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Pattern.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Signature.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Nexus.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Trees.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Nodes.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/cnexus.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/NOEtools.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/xpktools.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-i686-2.6/Bio/Parsers/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-i686-2.6/Bio/Parsers/spark.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway copying build/lib.linux-i686-2.6/Bio/Pathway/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/Graph.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/MultiGraph.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/HashSet.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBParser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Selection.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Polypeptide.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/StructureBuilder.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/MMCIFParser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Dice.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Residue.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/StructureAlignment.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Chain.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBExceptions.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/AbstractPropertyMap.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/NeighborSearch.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBList.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/NACCESS.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/FragmentMapper.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PSEA.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/ResidueDepth.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/DSSP.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Model.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Entity.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Atom.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Vector.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Superimposer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/parse_pdb_header.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/HSExposure.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/MMCIF2Dict.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Structure.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-i686-2.6/Bio/PDB/mmCIF/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlex.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen copying build/lib.linux-i686-2.6/Bio/PopGen/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-i686-2.6/Bio/PopGen/Async/Local.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-i686-2.6/Bio/PopGen/Async/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Async.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Controller.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Utils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/FileParser.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/Controller.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/Utils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/EasyController.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Async.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Template.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Controller.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Cache.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/island.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/ssm_1d.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/simple.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/ssm_2d.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/decline_lambda.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_island.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/bottle.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/decline_split.par -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/Prodoc.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/Pattern.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/DNAUtils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/Restriction_Dictionary.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/Restriction.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/RanaConfig.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/PrintFormat.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/RestrictionCompiler.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/Update.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Des.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Dom.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Cla.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Hie.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Raf.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Residues.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/IgIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/SwissIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/QualityIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/PirIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/FastaIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/_index.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/SffIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/InsdcIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/Interfaces.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/_convert.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/AceIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/TabIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/PhdIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CheckSum.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/ProtParamData.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/MeltingTemp.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/IsoelectricPoint.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CodonUsage.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/lcc.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/ProtParam.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CodonUsageIndices.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/Phd.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/Ace.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-i686-2.6/Bio/Sequencing/Applications/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-i686-2.6/Bio/Sequencing/Applications/_Novoalign.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-i686-2.6/Bio/Statistics/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-i686-2.6/Bio/Statistics/lowess.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/FreqTable.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/MatrixInfo.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-i686-2.6/Bio/SVDSuperimposer/SVDSuperimposer.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-i686-2.6/Bio/SVDSuperimposer/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/SProt.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/KeyWList.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/PhyloXMLIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/NexusIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/_io.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/NewickIO.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/Newick.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/BaseTree.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/PhyloXML.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/_utils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/_sugar.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo copying build/lib.linux-i686-2.6/Bio/Phylo/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-i686-2.6/Bio/UniGene/UniGene.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-i686-2.6/Bio/UniGene/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/dnal.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/psw.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-i686-2.6/Bio/Affy/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-i686-2.6/Bio/Affy/CelFile.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-i686-2.6/Bio/Cluster/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-i686-2.6/Bio/Cluster/cluster.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/KDTree.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/_CKDTree.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/cpairwise2.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/trie.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/cMarkovModel.so -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/__init__.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/DBUtils.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/Loader.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/BioSeq.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/BioSeqDatabase.py -> /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Transcribe.py to Transcribe.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Search.py to Search.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/EZRetrieve.py to EZRetrieve.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/DocSQL.py to DocSQL.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/mathfns.py to mathfns.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Translate.py to Translate.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HotRand.py to HotRand.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/File.py to File.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FilteredReader.py to FilteredReader.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/stringfns.py to stringfns.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ParserSupport.py to ParserSupport.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NetCatch.py to NetCatch.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/listfns.py to listfns.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/triefind.py to triefind.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PropertyManager.py to PropertyManager.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/FormatConvert.py to FormatConvert.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Generic.py to Generic.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/CompareAceStandalone.py to CompareAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/AlignAceStandalone.py to AlignAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIStandalone.py to NCBIStandalone.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/IUPACEncoding.py to IUPACEncoding.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/FastaAlign.py to FastaAlign.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Evolver.py to Evolver.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Organism.py to Organism.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/GeneralPoint.py to GeneralPoint.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Point.py to Point.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/TwoPoint.py to TwoPoint.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Uniform.py to Uniform.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/Simple.py to Simple.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/Stabilizing.py to Stabilizing.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Diversity.py to Diversity.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/RouletteWheel.py to RouletteWheel.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Abstract.py to Abstract.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Tournament.py to Tournament.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/LocationParser.py to LocationParser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/easy.py to easy.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/GenericTools.py to GenericTools.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/binning.py to binning.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Distribution.py to Distribution.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Comparative.py to Comparative.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/_Motif.py to _Motif.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Thresholds.py to Thresholds.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/AlignAce.py to AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/MAST.py to MAST.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/MEME.py to MEME.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/_AlignAce.py to _AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Training.py to Training.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/StopTraining.py to StopTraining.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Layer.py to Layer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Network.py to Network.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Schema.py to Schema.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Signature.py to Signature.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nexus.py to Nexus.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Trees.py to Trees.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nodes.py to Nodes.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/NOEtools.py to NOEtools.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/xpktools.py to xpktools.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/spark.py to spark.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/HashSet.py to HashSet.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Model.py to Model.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Atom.py to Atom.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/Local.py to Local.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Template.py to Template.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Cache.py to Cache.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/DNAUtils.py to DNAUtils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/RestrictionCompiler.py to RestrictionCompiler.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/Update.py to Update.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/SffIO.py to SffIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/SVDSuperimposer.py to SVDSuperimposer.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/SProt.py to SProt.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/_io.py to _io.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/Newick.py to Newick.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/_utils.py to _utils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/_sugar.py to _sugar.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Phylo/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/UniGene.py to UniGene.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc running install_egg_info Writing /build/buildd/python-biopython-1.54/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/biopython-1.54.egg-info dh_movefiles -ppython-biopython \ -ppython-biopython-sql \ --sourcedir=debian/python2.6-tmp dh_testdir dh_testroot dh_installdocs -i dh_installchangelogs -i dh_fixperms -i dh_compress -i dh_pysupport -i dh_gencontrol -i dh_md5sums -i dh_installdeb -i dh_builddeb -i pkgstriptranslations: building backport, doing nothing pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython-doc/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `python-biopython-doc' in `../python-biopython-doc_1.54-1~lucid1_all.deb'. pkgstriptranslations: building backport, doing nothing pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython-sql/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython-sql/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython-sql' in `../python-biopython-sql_1.54-1~lucid1_all.deb'. dh_testdir dh_testroot dh_installdocs -a dh_installchangelogs -a dh_fixperms -a dh_compress -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: python-biopython dh_strip debug symbol extraction: packages to act on: python-biopython dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: unknown substitution variable ${python:Versions} WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `python-biopython-dbgsym' in `../python-biopython-dbgsym_1.54-1~lucid1_i386.ddeb'. dh_pysupport -a dh_shlibdeps -a dpkg-shlibdeps: warning: dependency on libpthread.so.0 could be avoided if "debian/python-biopython/usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/MMCIFlex.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cMarkovModel.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/KDTree/_CKDTree.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/trie.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cpairwise2.so" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -a dh_md5sums -a dh_installdeb -a dh_builddeb -a pkgstriptranslations: building backport, doing nothing pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython' in `../python-biopython_1.54-1~lucid1_i386.deb'. python setup.py test running test test_Ace ... ok test_AlignIO ... ok test_AlignIO_convert ... ok test_BioSQL ... /build/buildd/python-biopython-1.54/build/lib.linux-i686-2.6/BioSQL/Loader.py:797: UserWarning: order location operators are not fully supported % feature.location_operator) ok test_BioSQL_SeqIO ... /build/buildd/python-biopython-1.54/build/lib.linux-i686-2.6/BioSQL/Loader.py:797: UserWarning: bond location operators are not fully supported % feature.location_operator) ok test_CAPS ... ok test_Clustalw ... ok test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use Bio.Clustalw. test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Crystal ... ok test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper. test_DocSQL ... ok test_Emboss ... skipping. Install EMBOSS if you want to use Bio.Emboss. test_EmbossPhylipNew ... skipping. Install the Emboss package 'PhylipNew' if you want to use the Bio.Emboss.Applications wrappers for phylogenetic tools. test_EmbossPrimer ... ok test_Entrez ... ok test_Enzyme ... ok test_FSSP ... ok test_Fasta ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GFF ... skipping. Environment is not configured for this test (not important if you do not plan to use Bio.GFF). test_GFF2 ... ok test_GenBank ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... skipping. Install ReportLab's renderPM module if you want to create bitmaps with Bio.Graphics. test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_HotRand ... skipping. internet not available test_IsoelectricPoint ... ok test_KDTree ... ok test_KEGG ... ok test_KeyWList ... ok test_Location ... ok test_LocationParser ... ok test_LogisticRegression ... ok test_MEME ... ok test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper. test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBIStandalone ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... skipping. Install the NCBI BLAST+ command line tools if you want to use the Bio.Blast.Applications wrapper. test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PDB ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_depend ... skipping. Install NetworkX if you want to use Bio.Phylo._utils. test_PopGen_FDist ... skipping. Install FDist if you want to use Bio.PopGen.FDist. test_PopGen_FDist_nodepend ... ok test_PopGen_GenePop ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop. test_PopGen_GenePop_EasyController ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal ... skipping. Install SIMCOAL2 if you want to use Bio.PopGen.SimCoal. test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper. test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper. test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SVDSuperimposer ... ok test_SeqIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper. test_UniGene ... ok test_UniGene_obsolete ... ok test_Wise ... FAIL test_align ... ok test_geo ... ok test_interpro ... ok test_kNN ... ok test_lowess ... ok test_pairwise2 ... ok test_prodoc ... ok test_property_manager ... ok test_prosite1 ... ok test_prosite2 ... ok test_prosite_patterns ... ok test_psw ... ok test_seq ... ok test_translate ... ok test_trie ... ok test_triefind ... ok Bio.Application docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.Align docstring test ... ok Bio.Align.Generic docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Clustalw docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.Wise docstring test ... FAIL Bio.Wise.psw docstring test ... ok Bio.Motif docstring test ... ok Bio.Statistics.lowess docstring test ... ok ====================================================================== FAIL: Call dnal, and do a trivial check on its output. ---------------------------------------------------------------------- Traceback (most recent call last): File "test_Wise.py", line 26, in test_dnal self.assert_(sys.stdout.getvalue().startswith("dnal -kbyte 100000 seq1.fna seq2.fna")) AssertionError ====================================================================== FAIL: Call psw, and do a trivial check on its output. ---------------------------------------------------------------------- Traceback (most recent call last): File "test_Wise.py", line 31, in test_psw self.assert_(sys.stdout.getvalue().startswith("psw -kbyte 4 seq1.faa seq2.faa")) AssertionError ====================================================================== FAIL: Doctest: Bio.Wise._build_align_cmdline ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.6/doctest.py", line 2152, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for Bio.Wise._build_align_cmdline File "/build/buildd/python-biopython-1.54/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 23, in _build_align_cmdline ---------------------------------------------------------------------- File "/build/buildd/python-biopython-1.54/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 26, in Bio.Wise._build_align_cmdline Failed example: _build_align_cmdline(["dnal"], ("seq1.fna", "seq2.fna"), "/tmp/output", kbyte=100000) Expected: 'dnal -kbyte 100000 seq1.fna seq2.fna > /tmp/output' Got: 'dnal -kbyte 100000 -quiet seq1.fna seq2.fna > /tmp/output' ---------------------------------------------------------------------- File "/build/buildd/python-biopython-1.54/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 28, in Bio.Wise._build_align_cmdline Failed example: _build_align_cmdline(["psw"], ("seq1.faa", "seq2.faa"), "/tmp/output_aa") Expected: 'psw -kbyte 300000 seq1.faa seq2.faa > /tmp/output_aa' Got: 'psw -kbyte 300000 -quiet seq1.faa seq2.faa > /tmp/output_aa' ---------------------------------------------------------------------- Ran 144 tests in 177.682 seconds FAILED (failures = 2) dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../python-biopython_1.54-1~lucid1_i386.changes dpkg-genchanges: warning: the current version (1.54-1~lucid1) is smaller than the previous one (1.54-1) dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100608-1955 Publishing debug debs. chroot-autobuild/build/buildd/python-biopython-doc_1.54-1~lucid1_all.deb: new debian package, version 2.0. size 5364026 bytes: control archive= 20377 bytes. 513 bytes, 14 lines control 70696 bytes, 715 lines md5sums Package: python-biopython-doc Source: python-biopython Version: 1.54-1~lucid1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8192 Recommends: python-biopython (= 1.54-1~lucid1) Section: doc Priority: optional Homepage: http://biopython.org Description: Documentation for the Biopython library Documentation and examples about how to use the Biopython library. chroot-autobuild/build/buildd/python-biopython-sql_1.54-1~lucid1_all.deb: new debian package, version 2.0. size 28530 bytes: control archive= 1055 bytes. 909 bytes, 19 lines control 616 bytes, 8 lines md5sums 197 bytes, 7 lines * postinst #!/bin/sh 200 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython-sql Source: python-biopython Version: 1.54-1~lucid1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 148 Depends: python (>= 2.3), python-support (>= 0.90.0), python-mysqldb, python-biopython Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) Provides: python2.6-biopython-sql Section: python Priority: optional Homepage: http://biopython.org Description: Biopython support for the BioSQL database schema This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema. Python-Version: 2.6 chroot-autobuild/build/buildd/python-biopython_1.54-1~lucid1_i386.deb: new debian package, version 2.0. size 1219708 bytes: control archive= 14103 bytes. 1369 bytes, 29 lines control 36337 bytes, 451 lines md5sums 193 bytes, 7 lines * postinst #!/bin/sh 196 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython Version: 1.54-1~lucid1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6916 Depends: python (<< 2.7), python (>= 2.6), python-support (>= 0.90.0), libc6 (>= 2.4), python-numpy, python-reportlab Recommends: python-biopython-doc (= 1.54-1~lucid1) Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Provides: python2.6-biopython Section: python Priority: optional Homepage: http://biopython.org Description: Python library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. 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2010-05-20 17:26 ./usr/share/pyshared/Bio/File.py -rw-r--r-- root/root 36162 2010-05-20 17:26 ./usr/share/pyshared/Bio/SeqRecord.py -rw-r--r-- root/root 4723 2010-05-20 17:26 ./usr/share/pyshared/Bio/listfns.py drwxr-xr-x root/root 0 2010-06-08 19:52 ./usr/share/python-support/ -rw-r--r-- root/root 21154 2010-06-08 19:52 ./usr/share/python-support/python-biopython.public python-biopython_1.54-1~lucid1_i386.changes: Format: 1.8 Date: Thu, 03 Jun 2010 11:47:23 +0200 Source: python-biopython Binary: python-biopython python-biopython-doc python-biopython-sql Architecture: all i386 Version: 1.54-1~lucid1 Distribution: lucid-backports Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Morten Kjeldgaard Description: python-biopython - Python library for bioinformatics python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema Launchpad-Bugs-Fixed: 589095 Changes: python-biopython (1.54-1~lucid1) lucid-backports; urgency=low . * Backport of version 1.54 from maverick to lucid. Version 1.54 was released in May 2010 and includes important new features, such as a phylogenetic module and the ability to read and write SFF format files, as well as a long list of improvements and bug-fixes. (Closes LP: #589095) Checksums-Sha1: 0639c56152a4cad60a5f911c190902c86a1f7d0d 5364026 python-biopython-doc_1.54-1~lucid1_all.deb 3a9b91d52d950e7115cc40aa461992f4bc9e9de3 28530 python-biopython-sql_1.54-1~lucid1_all.deb 027df22c951df38c5fc94e95fb6f14f3a3849edc 1219708 python-biopython_1.54-1~lucid1_i386.deb Checksums-Sha256: 102de2cc1414e6fb388de66fba0d8d447c97eb16f15431b952f036862a974396 5364026 python-biopython-doc_1.54-1~lucid1_all.deb 669fcadfd2e63f83494e0e5f82427b0695d0294fecd64c66ba897d414a820ac0 28530 python-biopython-sql_1.54-1~lucid1_all.deb d8b7b85146c6a87c7b2566b6728fa3155f59cd679e75d7a2969868fa50b9cd54 1219708 python-biopython_1.54-1~lucid1_i386.deb Files: 2eb604b306895b5f873cbab789683720 5364026 doc optional python-biopython-doc_1.54-1~lucid1_all.deb 33a5ab6f962ba03f99dba89146f712d9 28530 python optional python-biopython-sql_1.54-1~lucid1_all.deb 52e7480d524d1556bedb500c4a49c664 1219708 python optional python-biopython_1.54-1~lucid1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/python-biopython-1.54 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base mime-support m4 gettext file wise po-debconf python-numpy quilt python2.6 libcroco3 python-support libxml2 libpython2.6 libmysqlclient16 python-all-dev python-all python-dev man-db intltool-debian liblapack3gf python-reportlab html2text diffstat gettext-base flex python2.6-dev debhelper python libmagic1 libblas3gf python-central libgfortran3 libsqlite3-0 bsdmainutils libncursesw5 mysql-common python-mysqldb (Reading database ... 16092 files and directories currently installed.) Removing wise ... Removing python-numpy ... Removing quilt ... Purging configuration files for quilt ... Removing python-all-dev ... Removing python-all ... Removing python-dev ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing python-reportlab ... Removing diffstat ... Removing flex ... Removing python2.6-dev ... Removing debhelper ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing python-central ... Purging configuration files for python-central ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing python-mysqldb ... Removing m4 ... Removing file ... Purging configuration files for file ... Removing po-debconf ... Removing python-support ... Purging configuration files for python-support ... Removing libpython2.6 ... Purging configuration files for libpython2.6 ... Removing libmysqlclient16 ... Purging configuration files for libmysqlclient16 ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing python ... Purging configuration files for python ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing mysql-common ... Purging configuration files for mysql-common ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing libncursesw5 ... Purging configuration files for libncursesw5 ... Removing mime-support ... Purging configuration files for mime-support ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100608-1955 Build needed 00:03:42, 65732k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216'] Scanning for processes to kill in build /home/buildd/build-eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216'] Unmounting chroot for build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216'] Removing build eb4c56e2ed57f3e9de3356837ecc6e3f19ec1216