RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1429570-2946629', '/home/buildd/filecache-default/a33fe6f5d78b5fbb9c629822ae560cc8882ebe75'] Synching the system clock with the buildd NTP service... 8 Jan 04:55:05 ntpdate[13366]: adjust time server 10.122.37.1 offset -0.000009 sec Unpacking chroot for build 1429570-2946629 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1429570-2946629'] Mounting chroot for build 1429570-2946629 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1429570-2946629', 'universe'] Attempting OGRE for universe in build-1429570-2946629 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1429570-2946629', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1429570-2946629 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1429570-2946629'] Updating debian chroot for build 1429570-2946629 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [57.2kB] Get:3 http://ftpmaster.internal lucid/main Packages [1370kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5304kB] Fetched 6731kB in 9s (728kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libplymouth2 libpng12-0 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils cpp cpp-4.4 dash g++ g++-4.4 gcc gcc-4.4 gcc-4.4-base gnupg gpgv ifupdown libblkid1 libc-bin libc-dev-bin libc6.1 libc6.1-dev libgcc1 libgnutls26 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libssl0.9.8 libstdc++6 libstdc++6-4.4-dev libudev0 libuuid1 linux-libc-dev lsb-base makedev mount mountall openssl perl perl-base perl-modules procps sed tzdata util-linux 46 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/47.8MB of archives. After this operation, 3744kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! bash libc-dev-bin libc6.1-dev libc-bin libc6.1 linux-libc-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 binutils tzdata dash mount perl-modules perl perl-base sed lsb-base util-linux bsdutils libpng12-0 libplymouth2 makedev mountall apt libuuid1 libblkid1 libssl0.9.8 gpgv gnupg ifupdown libgnutls26 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libk5crypto3 openssl libudev0 procps apt-transport-https cpp gcc g++ debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. (Reading database ... 12514 files and directories currently installed.) Preparing to replace bash 4.0-5ubuntu2 (using .../bash_4.1-1ubuntu1_ia64.deb) ... Unpacking replacement bash ... Setting up bash (4.1-1ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 12514 files and directories currently installed.) Preparing to replace libc-dev-bin 2.10.2-2ubuntu3 (using .../libc-dev-bin_2.11~20100104-0ubuntu2_ia64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6.1-dev 2.10.2-2ubuntu3 (using .../libc6.1-dev_2.11~20100104-0ubuntu2_ia64.deb) ... Unpacking replacement libc6.1-dev ... Preparing to replace libc-bin 2.10.2-2ubuntu3 (using .../libc-bin_2.11~20100104-0ubuntu2_ia64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.11~20100104-0ubuntu2) ... (Reading database ... 12515 files and directories currently installed.) Preparing to replace libc6.1 2.10.2-2ubuntu3 (using .../libc6.1_2.11~20100104-0ubuntu2_ia64.deb) ... Unpacking replacement libc6.1 ... Setting up libc6.1 (2.11~20100104-0ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12515 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.32-8.12 (using .../linux-libc-dev_2.6.32-9.13_ia64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.4.2-5ubuntu1 (using .../libgomp1_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.2-5ubuntu1 (using .../cpp-4.4_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.2-5ubuntu1 (using .../gcc-4.4-base_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.2-8ubuntu2) ... (Reading database ... 12515 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.2-5ubuntu1 (using .../libgcc1_1%3a4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.2-8ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12515 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.2-5ubuntu1 (using .../gcc-4.4_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.2-5ubuntu1 (using .../g++-4.4_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.2-5ubuntu1 (using .../libstdc++6-4.4-dev_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.2-5ubuntu1 (using .../libstdc++6_4.4.2-8ubuntu2_ia64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.2-8ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12515 files and directories currently installed.) Preparing to replace binutils 2.20-4ubuntu3 (using .../binutils_2.20-4ubuntu4_ia64.deb) ... Unpacking replacement binutils ... Preparing to replace tzdata 2009s-0ubuntu1 (using .../tzdata_2009u-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2009u-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 8 04:55:51 UTC 2010. Universal Time is now: Fri Jan 8 04:55:51 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 12515 files and directories currently installed.) Preparing to replace dash 0.5.5.1-2ubuntu3 (using .../dash_0.5.5.1-3ubuntu1_ia64.deb) ... Unpacking replacement dash ... Setting up dash (0.5.5.1-3ubuntu1) ... (Reading database ... 12516 files and directories currently installed.) Preparing to replace mount 2.16-1ubuntu5 (using .../mount_2.16-1ubuntu6_ia64.deb) ... Unpacking replacement mount ... Setting up mount (2.16-1ubuntu6) ... (Reading database ... 12516 files and directories currently installed.) Preparing to replace perl-modules 5.10.0-24ubuntu4 (using .../perl-modules_5.10.1-8ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace perl 5.10.0-24ubuntu4 (using .../perl_5.10.1-8ubuntu1_ia64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.0-24ubuntu4 (using .../perl-base_5.10.1-8ubuntu1_ia64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.1-8ubuntu1) ... (Reading database ... 12675 files and directories currently installed.) Preparing to replace sed 4.2.1-4 (using .../archives/sed_4.2.1-6_ia64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-6) ... (Reading database ... 12675 files and directories currently installed.) Preparing to replace lsb-base 4.0-0ubuntu6 (using .../lsb-base_4.0-0ubuntu7_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu7) ... (Reading database ... 12675 files and directories currently installed.) Preparing to replace util-linux 2.16-1ubuntu5 (using .../util-linux_2.16-1ubuntu6_ia64.deb) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package util-linux should be updated. Unpacking replacement util-linux ... Setting up util-linux (2.16-1ubuntu6) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package util-linux should be updated. (Reading database ... 12675 files and directories currently installed.) Preparing to replace bsdutils 1:2.16-1ubuntu5 (using .../bsdutils_1%3a2.16-1ubuntu6_ia64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.16-1ubuntu6) ... Selecting previously deselected package libpng12-0. (Reading database ... 12675 files and directories currently installed.) Unpacking libpng12-0 (from .../libpng12-0_1.2.41-1_ia64.deb) ... Selecting previously deselected package libplymouth2. Unpacking libplymouth2 (from .../libplymouth2_0.8.0~-6_ia64.deb) ... Preparing to replace makedev 2.3.1-89 (using .../makedev_2.3.1-89ubuntu1_all.deb) ... Unpacking replacement makedev ... Setting up libpng12-0 (1.2.41-1) ... Setting up libplymouth2 (0.8.0~-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12698 files and directories currently installed.) Preparing to replace mountall 1.1 (using .../archives/mountall_2.3_ia64.deb) ... Unpacking replacement mountall ... Preparing to replace apt 0.7.24ubuntu1 (using .../apt_0.7.25ubuntu2_ia64.deb) ... Unpacking replacement apt ... Setting up apt (0.7.25ubuntu2) ... Installing new version of config file /etc/logrotate.d/apt ... Installing new version of config file /etc/cron.daily/apt ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12713 files and directories currently installed.) Preparing to replace libuuid1 2.16-1ubuntu5 (using .../libuuid1_2.16-1ubuntu6_ia64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.16-1ubuntu6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12713 files and directories currently installed.) Preparing to replace libblkid1 2.16-1ubuntu5 (using .../libblkid1_2.16-1ubuntu6_ia64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.16-1ubuntu6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12713 files and directories currently installed.) Preparing to replace libssl0.9.8 0.9.8k-7ubuntu3 (using .../libssl0.9.8_0.9.8k-7ubuntu4_ia64.deb) ... Unpacking replacement libssl0.9.8 ... Setting up libssl0.9.8 (0.9.8k-7ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12713 files and directories currently installed.) Preparing to replace gpgv 1.4.9-4ubuntu7 (using .../gpgv_1.4.10-2ubuntu1_ia64.deb) ... Unpacking replacement gpgv ... Preparing to replace gnupg 1.4.9-4ubuntu7 (using .../gnupg_1.4.10-2ubuntu1_ia64.deb) ... Unpacking replacement gnupg ... Preparing to replace ifupdown 0.6.8ubuntu22 (using .../ifupdown_0.6.8ubuntu25_ia64.deb) ... Unpacking replacement ifupdown ... Preparing to replace libgnutls26 2.8.4-2 (using .../libgnutls26_2.8.5-2_ia64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libgssapi-krb5-2 1.7+dfsg-3 (using .../libgssapi-krb5-2_1.7+dfsg-4_ia64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.7+dfsg-3 (using .../libkrb5-3_1.7+dfsg-4_ia64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.7+dfsg-3 (using .../libkrb5support0_1.7+dfsg-4_ia64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libk5crypto3 1.7+dfsg-3 (using .../libk5crypto3_1.7+dfsg-4_ia64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace openssl 0.9.8k-7ubuntu3 (using .../openssl_0.9.8k-7ubuntu4_ia64.deb) ... Unpacking replacement openssl ... Preparing to replace libudev0 149-3 (using .../libudev0_149-5_ia64.deb) ... Unpacking replacement libudev0 ... Preparing to replace procps 1:3.2.8-1ubuntu3 (using .../procps_1%3a3.2.8-1ubuntu4_ia64.deb) ... Unpacking replacement procps ... Preparing to replace apt-transport-https 0.7.24ubuntu1 (using .../apt-transport-https_0.7.25ubuntu2_ia64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.4.1-1ubuntu2 (using .../cpp_4%3a4.4.2-3ubuntu1_ia64.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.4.1-1ubuntu2 (using .../gcc_4%3a4.4.2-3ubuntu1_ia64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.4.1-1ubuntu2 (using .../g++_4%3a4.4.2-3ubuntu1_ia64.deb) ... Unpacking replacement g++ ... Setting up libc-dev-bin (2.11~20100104-0ubuntu2) ... Setting up linux-libc-dev (2.6.32-9.13) ... Setting up libc6.1-dev (2.11~20100104-0ubuntu2) ... Setting up libgomp1 (4.4.2-8ubuntu2) ... Setting up cpp-4.4 (4.4.2-8ubuntu2) ... Setting up binutils (2.20-4ubuntu4) ... Setting up gcc-4.4 (4.4.2-8ubuntu2) ... Setting up makedev (2.3.1-89ubuntu1) ... Setting up gpgv (1.4.10-2ubuntu1) ... Setting up gnupg (1.4.10-2ubuntu1) ... Setting up ifupdown (0.6.8ubuntu25) ... ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces Setting up libgnutls26 (2.8.5-2) ... Setting up libkrb5support0 (1.7+dfsg-4) ... Setting up libk5crypto3 (1.7+dfsg-4) ... Setting up libkrb5-3 (1.7+dfsg-4) ... Setting up libgssapi-krb5-2 (1.7+dfsg-4) ... Setting up openssl (0.9.8k-7ubuntu4) ... Setting up libudev0 (149-5) ... Setting up procps (1:3.2.8-1ubuntu4) ... Installing new version of config file /etc/sysctl.d/README ... Installing new version of config file /etc/sysctl.conf ... Setting up apt-transport-https (0.7.25ubuntu2) ... Setting up cpp (4:4.4.2-3ubuntu1) ... Setting up gcc (4:4.4.2-3ubuntu1) ... Setting up mountall (2.3) ... Installing new version of config file /etc/init/mountall.conf ... Installing new version of config file /etc/init/mountall-reboot.conf ... Installing new version of config file /etc/init/mountall-shell.conf ... Setting up perl-modules (5.10.1-8ubuntu1) ... Setting up perl (5.10.1-8ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.2-8ubuntu2) ... Setting up g++-4.4 (4.4.2-8ubuntu2) ... Setting up g++ (4:4.4.2-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1429570-2946629', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=lucid', '--comp=universe', 'python-biopython_1.53-1.dsc'] Initiating build 1429570-2946629 with 1 processor cores. Automatic build of python-biopython_1.53-1 on floe by sbuild/ia64 1.170.5 Build started at 20100108-0456 ****************************************************************************** python-biopython_1.53-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, python-reportlab, python-numpy, python-mysqldb, wise Checking for already installed source dependencies... debhelper: missing quilt: missing python-all-dev: missing flex: missing python-support: missing python-reportlab: missing python-numpy: missing python-mysqldb: missing wise: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt python-all-dev flex python-support python-reportlab python-numpy python-mysqldb wise Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils diffstat file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-central python-dev python2.6 python2.6-dev Suggested packages: wamerican wordlist whois vacation dh-make bison gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-profiler python-egenix-mxdatetime mysql-server-5.1 mysql-server python-mysqldb-dbg python-numpy-doc python-numpy-dbg python-nose pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.6-doc python2.6-profiler procmail graphviz wise-doc Recommended packages: curl wget lynx cvs libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl python-reportlab-accel python-renderpm python-imaging The following NEW packages will be installed: bsdmainutils debhelper diffstat file flex gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-all-dev python-central python-dev python-mysqldb python-numpy python-reportlab python-support python2.6 python2.6-dev quilt wise 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 9947kB/45.1MB of archives. After this operation, 150MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! m4 flex libmagic1 file libpcre3 libglib2.0-0 libncursesw5 libsqlite3-0 libxml2 mime-support python2.6 python python-central bsdmainutils gettext-base groff-base man-db python-support html2text libcroco3 gettext intltool-debian po-debconf debhelper diffstat libgfortran3 libblas3gf liblapack3gf mysql-common libmysqlclient16 libpython2.6 python-all python2.6-dev python-dev python-all-dev python-mysqldb python-numpy python-reportlab quilt wise Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main python-mysqldb 1.2.2-10 [112kB] Get:2 http://ftpmaster.internal lucid/main python-reportlab 2.3-0ubuntu1 [521kB] Get:3 http://ftpmaster.internal lucid/universe wise 2.4.1-8 [9313kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9947kB in 0s (13.5MB/s) Selecting previously deselected package m4. (Reading database ... 12720 files and directories currently installed.) Unpacking m4 (from .../archives/m4_1.4.13-3_ia64.deb) ... Selecting previously deselected package flex. Unpacking flex (from .../flex_2.5.35-8ubuntu1_ia64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-5_ia64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.03-5_ia64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_7.8-3_ia64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.23.1-1ubuntu1_ia64.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090803-2ubuntu2_ia64.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.21-2_ia64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.6.dfsg-1ubuntu1_ia64.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.48-1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.4-1ubuntu2_ia64.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-central. Unpacking python-central (from .../python-central_0.6.11ubuntu10_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.1ubuntu1_ia64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu2_ia64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-6_ia64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.6-4_ia64.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.4ubuntu1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_ia64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_ia64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-8ubuntu2_ia64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.10ubuntu1_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1_ia64.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.2-8ubuntu2_ia64.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-2_ia64.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-2_ia64.deb) ... Selecting previously deselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.1.37-1ubuntu7_all.deb) ... Selecting previously deselected package libmysqlclient16. Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.37-1ubuntu7_ia64.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.4-1ubuntu2_ia64.deb) ... Selecting previously deselected package python-all. Unpacking python-all (from .../python-all_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.4-1ubuntu2_ia64.deb) ... Selecting previously deselected package python-dev. Unpacking python-dev (from .../python-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-mysqldb. Unpacking python-mysqldb (from .../python-mysqldb_1.2.2-10_ia64.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.3.0-3_ia64.deb) ... Selecting previously deselected package python-reportlab. Unpacking python-reportlab (from .../python-reportlab_2.3-0ubuntu1_all.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.48-1ubuntu1_all.deb) ... Selecting previously deselected package wise. Unpacking wise (from .../archives/wise_2.4.1-8_ia64.deb) ... Setting up m4 (1.4.13-3) ... Setting up flex (2.5.35-8ubuntu1) ... Setting up libmagic1 (5.03-5) ... Setting up file (5.03-5) ... Setting up libpcre3 (7.8-3) ... Setting up libglib2.0-0 (2.23.1-1ubuntu1) ... Setting up libncursesw5 (5.7+20090803-2ubuntu2) ... Setting up libsqlite3-0 (3.6.21-2) ... Setting up libxml2 (2.7.6.dfsg-1ubuntu1) ... Setting up mime-support (3.48-1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.4-1ubuntu2) ... Setting up python (2.6.4-0ubuntu2) ... Setting up python-central (0.6.11ubuntu10) ... Setting up bsdmainutils (8.0.1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu2) ... Setting up groff-base (1.20.1-6) ... Setting up man-db (2.5.6-4) ... Building database of manual pages ... Setting up python-support (1.0.4ubuntu1) ... Setting up html2text (1.3.2a-14) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.10ubuntu1) ... Setting up diffstat (1.47-1) ... Setting up libgfortran3 (4.4.2-8ubuntu2) ... Setting up libblas3gf (1.2-2) ... Setting up liblapack3gf (3.2.1-2) ... Setting up mysql-common (5.1.37-1ubuntu7) ... Setting up libmysqlclient16 (5.1.37-1ubuntu7) ... Setting up libpython2.6 (2.6.4-1ubuntu2) ... Setting up python-all (2.6.4-0ubuntu2) ... Setting up python2.6-dev (2.6.4-1ubuntu2) ... Setting up python-dev (2.6.4-0ubuntu2) ... Setting up python-all-dev (2.6.4-0ubuntu2) ... Setting up python-mysqldb (1.2.2-10) ... Setting up python-numpy (1:1.3.0-3) ... Setting up python-reportlab (2.3-0ubuntu1) ... Setting up quilt (0.48-1ubuntu1) ... Setting up wise (2.4.1-8) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6.1-dev_2.11~20100104-0ubuntu2 make_3.81-7 dpkg-dev_1.15.4.1ubuntu1 g++-4.4_4.4.2-8ubuntu2 gcc-4.4_4.4.2-8ubuntu2 binutils_2.20-4ubuntu4 libstdc++6_4.4.2-8ubuntu2 libstdc++6-4.4-dev_4.4.2-8ubuntu2 ------------------------------------------------------------------------------ gpgv: Signature made Mon Dec 21 18:29:05 2009 UTC using DSA key ID EB88E930 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./python-biopython_1.53-1.dsc dpkg-source: info: extracting python-biopython in python-biopython-1.53 dpkg-source: info: unpacking python-biopython_1.53.orig.tar.gz dpkg-source: info: applying python-biopython_1.53-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.53-1 dpkg-buildpackage: host architecture ia64 /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot python2.6 setup.py clean running clean rm -f -r debian/python2.6-tmp dh_testdir dh_testroot dh_clean rm -f build-stamp rm -f Tests/*.pyc rm -f Tests/Graphics/*.eps rm -f Tests/Graphics/*.pdf rm -f Tests/dump rm -f Tests/NeuralNetwork/patternio.txt rm -f -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx rm -f -r build debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 01-enable-mmCIF.patch patching file setup.py Hunk #1 succeeded at 293 (offset -47 lines). Now at patch 01-enable-mmCIF.patch touch debian/stamp-patched echo ia64 ia64 yes | python2.6 setup.py build running build running build_py creating build creating build/lib.linux-ia64-2.6 creating build/lib.linux-ia64-2.6/Bio copying Bio/stringfns.py -> build/lib.linux-ia64-2.6/Bio copying Bio/triefind.py -> build/lib.linux-ia64-2.6/Bio copying Bio/__init__.py -> build/lib.linux-ia64-2.6/Bio copying Bio/EZRetrieve.py -> build/lib.linux-ia64-2.6/Bio copying Bio/Translate.py -> build/lib.linux-ia64-2.6/Bio copying Bio/PropertyManager.py -> build/lib.linux-ia64-2.6/Bio copying Bio/SeqFeature.py -> build/lib.linux-ia64-2.6/Bio copying Bio/Transcribe.py -> build/lib.linux-ia64-2.6/Bio copying Bio/NetCatch.py -> build/lib.linux-ia64-2.6/Bio copying Bio/Index.py -> build/lib.linux-ia64-2.6/Bio copying Bio/MarkovModel.py -> build/lib.linux-ia64-2.6/Bio copying Bio/File.py -> build/lib.linux-ia64-2.6/Bio copying Bio/ParserSupport.py -> build/lib.linux-ia64-2.6/Bio copying Bio/HotRand.py -> build/lib.linux-ia64-2.6/Bio copying Bio/FilteredReader.py -> build/lib.linux-ia64-2.6/Bio copying Bio/pairwise2.py -> build/lib.linux-ia64-2.6/Bio copying Bio/kNN.py -> build/lib.linux-ia64-2.6/Bio copying Bio/listfns.py -> build/lib.linux-ia64-2.6/Bio copying Bio/Seq.py -> build/lib.linux-ia64-2.6/Bio copying Bio/Search.py -> build/lib.linux-ia64-2.6/Bio copying Bio/DocSQL.py -> build/lib.linux-ia64-2.6/Bio copying Bio/SeqRecord.py -> build/lib.linux-ia64-2.6/Bio copying Bio/LogisticRegression.py -> build/lib.linux-ia64-2.6/Bio copying Bio/MaxEntropy.py -> build/lib.linux-ia64-2.6/Bio copying Bio/NaiveBayes.py -> build/lib.linux-ia64-2.6/Bio copying Bio/mathfns.py -> build/lib.linux-ia64-2.6/Bio copying Bio/utils.py -> build/lib.linux-ia64-2.6/Bio creating build/lib.linux-ia64-2.6/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-ia64-2.6/Bio/Align copying Bio/Align/Generic.py -> build/lib.linux-ia64-2.6/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-ia64-2.6/Bio/Align copying Bio/Align/FormatConvert.py -> build/lib.linux-ia64-2.6/Bio/Align creating build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-ia64-2.6/Bio/Align/Applications creating build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-ia64-2.6/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-ia64-2.6/Bio/AlignIO creating build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/AlignAceStandalone.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/Applications.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/__init__.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/CompareAceStandalone.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/Motif.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/Scanner.py -> build/lib.linux-ia64-2.6/Bio/AlignAce copying Bio/AlignAce/Parser.py -> build/lib.linux-ia64-2.6/Bio/AlignAce creating build/lib.linux-ia64-2.6/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-ia64-2.6/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> build/lib.linux-ia64-2.6/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> build/lib.linux-ia64-2.6/Bio/Alphabet creating build/lib.linux-ia64-2.6/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-ia64-2.6/Bio/Application creating build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/Record.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-ia64-2.6/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-ia64-2.6/Bio/Blast creating build/lib.linux-ia64-2.6/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-ia64-2.6/Bio/CAPS creating build/lib.linux-ia64-2.6/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-ia64-2.6/Bio/Compass creating build/lib.linux-ia64-2.6/Bio/Clustalw copying Bio/Clustalw/__init__.py -> build/lib.linux-ia64-2.6/Bio/Clustalw creating build/lib.linux-ia64-2.6/Bio/Crystal copying Bio/Crystal/__init__.py -> build/lib.linux-ia64-2.6/Bio/Crystal creating build/lib.linux-ia64-2.6/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-ia64-2.6/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-ia64-2.6/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-ia64-2.6/Bio/Data creating build/lib.linux-ia64-2.6/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-ia64-2.6/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-ia64-2.6/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-ia64-2.6/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-ia64-2.6/Bio/Emboss creating build/lib.linux-ia64-2.6/Bio/Encodings copying Bio/Encodings/__init__.py -> build/lib.linux-ia64-2.6/Bio/Encodings copying Bio/Encodings/IUPACEncoding.py -> build/lib.linux-ia64-2.6/Bio/Encodings creating build/lib.linux-ia64-2.6/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-ia64-2.6/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-ia64-2.6/Bio/Entrez creating build/lib.linux-ia64-2.6/Bio/Enzyme copying Bio/Enzyme/__init__.py -> build/lib.linux-ia64-2.6/Bio/Enzyme creating build/lib.linux-ia64-2.6/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-ia64-2.6/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-ia64-2.6/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-ia64-2.6/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-ia64-2.6/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-ia64-2.6/Bio/ExPASy creating build/lib.linux-ia64-2.6/Bio/Fasta copying Bio/Fasta/__init__.py -> build/lib.linux-ia64-2.6/Bio/Fasta copying Bio/Fasta/FastaAlign.py -> build/lib.linux-ia64-2.6/Bio/Fasta creating build/lib.linux-ia64-2.6/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> build/lib.linux-ia64-2.6/Bio/FSSP copying Bio/FSSP/__init__.py -> build/lib.linux-ia64-2.6/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> build/lib.linux-ia64-2.6/Bio/FSSP creating build/lib.linux-ia64-2.6/Bio/GA copying Bio/GA/Organism.py -> build/lib.linux-ia64-2.6/Bio/GA copying Bio/GA/__init__.py -> build/lib.linux-ia64-2.6/Bio/GA copying Bio/GA/Evolver.py -> build/lib.linux-ia64-2.6/Bio/GA creating build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> build/lib.linux-ia64-2.6/Bio/GA/Crossover creating build/lib.linux-ia64-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> build/lib.linux-ia64-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> build/lib.linux-ia64-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> build/lib.linux-ia64-2.6/Bio/GA/Mutation creating build/lib.linux-ia64-2.6/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> build/lib.linux-ia64-2.6/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-ia64-2.6/Bio/GA/Repair creating build/lib.linux-ia64-2.6/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> build/lib.linux-ia64-2.6/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> build/lib.linux-ia64-2.6/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> build/lib.linux-ia64-2.6/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-ia64-2.6/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> build/lib.linux-ia64-2.6/Bio/GA/Selection creating build/lib.linux-ia64-2.6/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-ia64-2.6/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-ia64-2.6/Bio/GenBank copying Bio/GenBank/LocationParser.py -> build/lib.linux-ia64-2.6/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-ia64-2.6/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-ia64-2.6/Bio/GenBank creating build/lib.linux-ia64-2.6/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-ia64-2.6/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-ia64-2.6/Bio/Geo creating build/lib.linux-ia64-2.6/Bio/GFF copying Bio/GFF/GenericTools.py -> build/lib.linux-ia64-2.6/Bio/GFF copying Bio/GFF/__init__.py -> build/lib.linux-ia64-2.6/Bio/GFF copying Bio/GFF/easy.py -> build/lib.linux-ia64-2.6/Bio/GFF copying Bio/GFF/binning.py -> build/lib.linux-ia64-2.6/Bio/GFF creating build/lib.linux-ia64-2.6/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-ia64-2.6/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-ia64-2.6/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-ia64-2.6/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-ia64-2.6/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-ia64-2.6/Bio/Graphics creating build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram creating build/lib.linux-ia64-2.6/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-ia64-2.6/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-ia64-2.6/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-ia64-2.6/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-ia64-2.6/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-ia64-2.6/Bio/HMM creating build/lib.linux-ia64-2.6/Bio/InterPro copying Bio/InterPro/__init__.py -> build/lib.linux-ia64-2.6/Bio/InterPro creating build/lib.linux-ia64-2.6/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-ia64-2.6/Bio/KEGG creating build/lib.linux-ia64-2.6/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-ia64-2.6/Bio/KEGG/Compound creating build/lib.linux-ia64-2.6/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-ia64-2.6/Bio/KEGG/Enzyme creating build/lib.linux-ia64-2.6/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-ia64-2.6/Bio/KEGG/Map creating build/lib.linux-ia64-2.6/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-ia64-2.6/Bio/Medline creating build/lib.linux-ia64-2.6/Bio/MEME copying Bio/MEME/__init__.py -> build/lib.linux-ia64-2.6/Bio/MEME copying Bio/MEME/Motif.py -> build/lib.linux-ia64-2.6/Bio/MEME copying Bio/MEME/Parser.py -> build/lib.linux-ia64-2.6/Bio/MEME creating build/lib.linux-ia64-2.6/Bio/Motif copying Bio/Motif/__init__.py -> build/lib.linux-ia64-2.6/Bio/Motif copying Bio/Motif/_Motif.py -> build/lib.linux-ia64-2.6/Bio/Motif copying Bio/Motif/Thresholds.py -> build/lib.linux-ia64-2.6/Bio/Motif creating build/lib.linux-ia64-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> build/lib.linux-ia64-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> build/lib.linux-ia64-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> build/lib.linux-ia64-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> build/lib.linux-ia64-2.6/Bio/Motif/Parsers creating build/lib.linux-ia64-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/_AlignAce.py -> build/lib.linux-ia64-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> build/lib.linux-ia64-2.6/Bio/Motif/Applications creating build/lib.linux-ia64-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork creating build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation creating build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene creating build/lib.linux-ia64-2.6/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-ia64-2.6/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-ia64-2.6/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-ia64-2.6/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-ia64-2.6/Bio/Nexus creating build/lib.linux-ia64-2.6/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-ia64-2.6/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-ia64-2.6/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-ia64-2.6/Bio/NMR creating build/lib.linux-ia64-2.6/Bio/Parsers copying Bio/Parsers/__init__.py -> build/lib.linux-ia64-2.6/Bio/Parsers copying Bio/Parsers/spark.py -> build/lib.linux-ia64-2.6/Bio/Parsers creating build/lib.linux-ia64-2.6/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-ia64-2.6/Bio/Pathway creating build/lib.linux-ia64-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-ia64-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-ia64-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-ia64-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/HashSet.py -> build/lib.linux-ia64-2.6/Bio/Pathway/Rep creating build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/Vector.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-ia64-2.6/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-ia64-2.6/Bio/PDB creating build/lib.linux-ia64-2.6/Bio/PDB/mmCIF copying Bio/PDB/mmCIF/__init__.py -> build/lib.linux-ia64-2.6/Bio/PDB/mmCIF creating build/lib.linux-ia64-2.6/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-ia64-2.6/Bio/PopGen creating build/lib.linux-ia64-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> build/lib.linux-ia64-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> build/lib.linux-ia64-2.6/Bio/PopGen/Async creating build/lib.linux-ia64-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> build/lib.linux-ia64-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> build/lib.linux-ia64-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> build/lib.linux-ia64-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> build/lib.linux-ia64-2.6/Bio/PopGen/FDist creating build/lib.linux-ia64-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-ia64-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-ia64-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-ia64-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> build/lib.linux-ia64-2.6/Bio/PopGen/GenePop creating build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal creating build/lib.linux-ia64-2.6/Bio/Prosite copying Bio/Prosite/__init__.py -> build/lib.linux-ia64-2.6/Bio/Prosite copying Bio/Prosite/Pattern.py -> build/lib.linux-ia64-2.6/Bio/Prosite copying Bio/Prosite/Prodoc.py -> build/lib.linux-ia64-2.6/Bio/Prosite creating build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/DNAUtils.py -> build/lib.linux-ia64-2.6/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-ia64-2.6/Bio/Restriction creating build/lib.linux-ia64-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/RestrictionCompiler.py -> build/lib.linux-ia64-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/__init__.py -> build/lib.linux-ia64-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/Update.py -> build/lib.linux-ia64-2.6/Bio/Restriction/_Update creating build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-ia64-2.6/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-ia64-2.6/Bio/SCOP creating build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/_convert.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-ia64-2.6/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-ia64-2.6/Bio/SeqIO creating build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-ia64-2.6/Bio/SeqUtils creating build/lib.linux-ia64-2.6/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-ia64-2.6/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-ia64-2.6/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-ia64-2.6/Bio/Sequencing creating build/lib.linux-ia64-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-ia64-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-ia64-2.6/Bio/Sequencing/Applications creating build/lib.linux-ia64-2.6/Bio/Statistics copying Bio/Statistics/lowess.py -> build/lib.linux-ia64-2.6/Bio/Statistics copying Bio/Statistics/__init__.py -> build/lib.linux-ia64-2.6/Bio/Statistics creating build/lib.linux-ia64-2.6/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.linux-ia64-2.6/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.linux-ia64-2.6/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.linux-ia64-2.6/Bio/SubsMat creating build/lib.linux-ia64-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-ia64-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/SVDSuperimposer.py -> build/lib.linux-ia64-2.6/Bio/SVDSuperimposer creating build/lib.linux-ia64-2.6/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-ia64-2.6/Bio/SwissProt copying Bio/SwissProt/SProt.py -> build/lib.linux-ia64-2.6/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-ia64-2.6/Bio/SwissProt creating build/lib.linux-ia64-2.6/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-ia64-2.6/Bio/UniGene copying Bio/UniGene/UniGene.py -> build/lib.linux-ia64-2.6/Bio/UniGene creating build/lib.linux-ia64-2.6/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.linux-ia64-2.6/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.linux-ia64-2.6/Bio/Wise copying Bio/Wise/psw.py -> build/lib.linux-ia64-2.6/Bio/Wise creating build/lib.linux-ia64-2.6/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-ia64-2.6/BioSQL copying BioSQL/__init__.py -> build/lib.linux-ia64-2.6/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-ia64-2.6/BioSQL copying BioSQL/Loader.py -> build/lib.linux-ia64-2.6/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-ia64-2.6/BioSQL creating build/lib.linux-ia64-2.6/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-ia64-2.6/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-ia64-2.6/Bio/Affy creating build/lib.linux-ia64-2.6/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-ia64-2.6/Bio/Cluster creating build/lib.linux-ia64-2.6/Bio/KDTree copying Bio/KDTree/__init__.py -> build/lib.linux-ia64-2.6/Bio/KDTree copying Bio/KDTree/KDTree.py -> build/lib.linux-ia64-2.6/Bio/KDTree creating build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_020511.dtd -> build/lib.linux-ia64-2.6/Bio/Entrez/DTDs creating build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.linux-ia64-2.6 creating build/temp.linux-ia64-2.6/Bio gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cpairwise2module.c -o build/temp.linux-ia64-2.6/Bio/cpairwise2module.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/csupport.c -o build/temp.linux-ia64-2.6/Bio/csupport.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/cpairwise2module.o build/temp.linux-ia64-2.6/Bio/csupport.o -o build/lib.linux-ia64-2.6/Bio/cpairwise2.so building 'Bio.trie' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/triemodule.c -o build/temp.linux-ia64-2.6/Bio/triemodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/trie.c -o build/temp.linux-ia64-2.6/Bio/trie.o Bio/trie.c: In function 'Trie_set': Bio/trie.c:103: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:103: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:156: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 1 of 'strncpy' differ in signedness /usr/include/bits/string3.h:120: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 2 of 'strncpy' differ in signedness /usr/include/bits/string3.h:120: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'Trie_get': Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:235: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_get_approximate_transition': Bio/trie.c:268: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c: In function '_get_approximate_trie': Bio/trie.c:353: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:355: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:367: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:369: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c: In function 'Trie_has_prefix': Bio/trie.c:440: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:441: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_iterate_helper': Bio/trie.c:468: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:470: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:144: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_with_prefix_helper': Bio/trie.c:521: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:522: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:530: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:151: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_serialize_transition': Bio/trie.c:621: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_deserialize_transition': Bio/trie.c:708: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:708: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'test': Bio/trie.c:752: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:753: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:754: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:755: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:757: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:758: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:759: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:760: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:762: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:763: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:765: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:768: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:769: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/triemodule.o build/temp.linux-ia64-2.6/Bio/trie.o -o build/lib.linux-ia64-2.6/Bio/trie.so building 'Bio.cMarkovModel' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cMarkovModelmodule.c -o build/temp.linux-ia64-2.6/Bio/cMarkovModelmodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/cMarkovModelmodule.o build/temp.linux-ia64-2.6/Bio/csupport.o -o build/lib.linux-ia64-2.6/Bio/cMarkovModel.so building 'Bio.PDB.mmCIF.MMCIFlex' extension creating build/temp.linux-ia64-2.6/Bio/PDB creating build/temp.linux-ia64-2.6/Bio/PDB/mmCIF gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/lex.yy.c -o build/temp.linux-ia64-2.6/Bio/PDB/mmCIF/lex.yy.o mmcif.lex:52: warning: function declaration isn't a prototype lex.yy.c:1040: warning: 'yyunput' defined but not used lex.yy.c:1086: warning: 'input' defined but not used gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/MMCIFlexmodule.c -o build/temp.linux-ia64-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_open_file': Bio/PDB/mmCIF/MMCIFlexmodule.c:16: warning: implicit declaration of function 'mmcif_set_file' Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_get_token': Bio/PDB/mmCIF/MMCIFlexmodule.c:44: warning: implicit declaration of function 'mmcif_get_token' Bio/PDB/mmCIF/MMCIFlexmodule.c: At top level: Bio/PDB/mmCIF/MMCIFlexmodule.c:67: warning: function declaration isn't a prototype gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/PDB/mmCIF/lex.yy.o build/temp.linux-ia64-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o -lfl -o build/lib.linux-ia64-2.6/Bio/PDB/mmCIF/MMCIFlex.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-ia64-2.6/Bio/Nexus gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Nexus/cnexus.c -o build/temp.linux-ia64-2.6/Bio/Nexus/cnexus.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/Nexus/cnexus.o -o build/lib.linux-ia64-2.6/Bio/Nexus/cnexus.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-ia64-2.6/Bio/Cluster gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/clustermodule.c -o build/temp.linux-ia64-2.6/Bio/Cluster/clustermodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/cluster.c -o build/temp.linux-ia64-2.6/Bio/Cluster/cluster.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/Cluster/clustermodule.o build/temp.linux-ia64-2.6/Bio/Cluster/cluster.o -o build/lib.linux-ia64-2.6/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-ia64-2.6/Bio/KDTree gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTree.c -o build/temp.linux-ia64-2.6/Bio/KDTree/KDTree.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-ia64-2.6/Bio/KDTree/KDTreemodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/KDTree/KDTree.o build/temp.linux-ia64-2.6/Bio/KDTree/KDTreemodule.o -o build/lib.linux-ia64-2.6/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-ia64-2.6/Bio/Motif gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Motif/_pwm.c -o build/temp.linux-ia64-2.6/Bio/Motif/_pwm.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-ia64-2.6/Bio/Motif/_pwm.o -o build/lib.linux-ia64-2.6/Bio/Motif/_pwm.so touch build-stamp /usr/bin/fakeroot debian/rules binary-arch echo ia64 ia64 yes | python2.6 setup.py build running build running build_py running build_ext touch build-stamp dh_testdir dh_testroot yes | python2.6 setup.py install --root /build/buildd/python-biopython-1.53/debian/python2.6-tmp --install-layout=deb running install running build running build_py running build_ext running install_lib creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6 creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/stringfns.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/triefind.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/EZRetrieve.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/Translate.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/PropertyManager.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/SeqFeature.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/Transcribe.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/NetCatch.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/Index.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/MarkovModel.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/File.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/ParserSupport.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/HotRand.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/FilteredReader.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/pairwise2.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/kNN.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/listfns.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/Seq.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/Search.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/DocSQL.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/SeqRecord.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/LogisticRegression.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/MaxEntropy.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/NaiveBayes.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/mathfns.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/utils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-ia64-2.6/Bio/Align/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-ia64-2.6/Bio/Align/Generic.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-ia64-2.6/Bio/Align/AlignInfo.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-ia64-2.6/Bio/Align/FormatConvert.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Probcons.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Clustalw.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_TCoffee.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Muscle.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Mafft.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Dialign.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-ia64-2.6/Bio/Align/Applications/_Prank.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/PhylipIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/EmbossIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/FastaIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/StockholmIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/NexusIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/Interfaces.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-ia64-2.6/Bio/AlignIO/ClustalIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/AlignAceStandalone.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/Applications.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/CompareAceStandalone.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/Motif.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/Scanner.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-ia64-2.6/Bio/AlignAce/Parser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-ia64-2.6/Bio/Alphabet/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-ia64-2.6/Bio/Alphabet/Reduced.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-ia64-2.6/Bio/Alphabet/IUPAC.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application copying build/lib.linux-ia64-2.6/Bio/Application/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/NCBIXML.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/Applications.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/NCBIStandalone.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/Record.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/ParseBlastTable.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-ia64-2.6/Bio/Blast/NCBIWWW.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS copying build/lib.linux-ia64-2.6/Bio/CAPS/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass copying build/lib.linux-ia64-2.6/Bio/Compass/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw copying build/lib.linux-ia64-2.6/Bio/Clustalw/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal copying build/lib.linux-ia64-2.6/Bio/Crystal/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-ia64-2.6/Bio/Data/IUPACData.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-ia64-2.6/Bio/Data/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-ia64-2.6/Bio/Data/CodonTable.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-ia64-2.6/Bio/Emboss/Applications.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-ia64-2.6/Bio/Emboss/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-ia64-2.6/Bio/Emboss/Primer3.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-ia64-2.6/Bio/Emboss/PrimerSearch.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-ia64-2.6/Bio/Encodings/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-ia64-2.6/Bio/Encodings/IUPACEncoding.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-ia64-2.6/Bio/Entrez/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-ia64-2.6/Bio/Entrez/Parser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/pmc-1.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/egquery.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/eSpell.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/taxon.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-ia64-2.6/Bio/Entrez/DTDs/eLink_020511.dtd -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme copying build/lib.linux-ia64-2.6/Bio/Enzyme/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-ia64-2.6/Bio/ExPASy/ScanProsite.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-ia64-2.6/Bio/ExPASy/Prosite.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-ia64-2.6/Bio/ExPASy/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-ia64-2.6/Bio/ExPASy/Prodoc.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-ia64-2.6/Bio/ExPASy/Enzyme.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-ia64-2.6/Bio/Fasta/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-ia64-2.6/Bio/Fasta/FastaAlign.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-ia64-2.6/Bio/FSSP/FSSPTools.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-ia64-2.6/Bio/FSSP/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-ia64-2.6/Bio/FSSP/fssp_rec.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-ia64-2.6/Bio/GA/Organism.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-ia64-2.6/Bio/GA/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-ia64-2.6/Bio/GA/Evolver.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/TwoPoint.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/GeneralPoint.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/General.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/Uniform.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-ia64-2.6/Bio/GA/Crossover/Point.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-ia64-2.6/Bio/GA/Mutation/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-ia64-2.6/Bio/GA/Mutation/General.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-ia64-2.6/Bio/GA/Mutation/Simple.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-ia64-2.6/Bio/GA/Repair/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-ia64-2.6/Bio/GA/Repair/Stabilizing.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-ia64-2.6/Bio/GA/Selection/Tournament.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-ia64-2.6/Bio/GA/Selection/Diversity.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-ia64-2.6/Bio/GA/Selection/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-ia64-2.6/Bio/GA/Selection/RouletteWheel.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-ia64-2.6/Bio/GA/Selection/Abstract.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-ia64-2.6/Bio/GenBank/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-ia64-2.6/Bio/GenBank/Record.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-ia64-2.6/Bio/GenBank/LocationParser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-ia64-2.6/Bio/GenBank/Scanner.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-ia64-2.6/Bio/GenBank/utils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-ia64-2.6/Bio/Geo/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-ia64-2.6/Bio/Geo/Record.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-ia64-2.6/Bio/GFF/GenericTools.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-ia64-2.6/Bio/GFF/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-ia64-2.6/Bio/GFF/easy.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-ia64-2.6/Bio/GFF/binning.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-ia64-2.6/Bio/Graphics/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-ia64-2.6/Bio/Graphics/Distribution.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-ia64-2.6/Bio/Graphics/DisplayRepresentation.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-ia64-2.6/Bio/Graphics/Comparative.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-ia64-2.6/Bio/Graphics/BasicChromosome.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_Track.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-ia64-2.6/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-ia64-2.6/Bio/HMM/DynamicProgramming.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-ia64-2.6/Bio/HMM/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-ia64-2.6/Bio/HMM/MarkovModel.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-ia64-2.6/Bio/HMM/Trainer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-ia64-2.6/Bio/HMM/Utilities.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro copying build/lib.linux-ia64-2.6/Bio/InterPro/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG copying build/lib.linux-ia64-2.6/Bio/KEGG/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound copying build/lib.linux-ia64-2.6/Bio/KEGG/Compound/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme copying build/lib.linux-ia64-2.6/Bio/KEGG/Enzyme/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map copying build/lib.linux-ia64-2.6/Bio/KEGG/Map/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline copying build/lib.linux-ia64-2.6/Bio/Medline/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-ia64-2.6/Bio/MEME/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-ia64-2.6/Bio/MEME/Motif.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-ia64-2.6/Bio/MEME/Parser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-ia64-2.6/Bio/Motif/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-ia64-2.6/Bio/Motif/_Motif.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-ia64-2.6/Bio/Motif/Thresholds.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-ia64-2.6/Bio/Motif/Parsers/AlignAce.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-ia64-2.6/Bio/Motif/Parsers/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-ia64-2.6/Bio/Motif/Parsers/MAST.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-ia64-2.6/Bio/Motif/Parsers/MEME.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-ia64-2.6/Bio/Motif/Applications/_AlignAce.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-ia64-2.6/Bio/Motif/Applications/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-ia64-2.6/Bio/Motif/_pwm.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/StopTraining.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Training.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation/Network.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation/Layer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/BackPropagation/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene/Motif.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene/Pattern.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene/Signature.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-ia64-2.6/Bio/NeuralNetwork/Gene/Schema.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-ia64-2.6/Bio/Nexus/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-ia64-2.6/Bio/Nexus/Trees.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-ia64-2.6/Bio/Nexus/Nodes.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-ia64-2.6/Bio/Nexus/Nexus.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-ia64-2.6/Bio/Nexus/cnexus.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-ia64-2.6/Bio/NMR/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-ia64-2.6/Bio/NMR/xpktools.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-ia64-2.6/Bio/NMR/NOEtools.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-ia64-2.6/Bio/Parsers/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-ia64-2.6/Bio/Parsers/spark.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway copying build/lib.linux-ia64-2.6/Bio/Pathway/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-ia64-2.6/Bio/Pathway/Rep/MultiGraph.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-ia64-2.6/Bio/Pathway/Rep/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-ia64-2.6/Bio/Pathway/Rep/Graph.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-ia64-2.6/Bio/Pathway/Rep/HashSet.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Atom.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/PDBExceptions.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Model.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/PDBList.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/DSSP.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/NACCESS.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Selection.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Residue.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/PDBIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/MMCIF2Dict.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Entity.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/NeighborSearch.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/PDBParser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/HSExposure.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/AbstractPropertyMap.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Superimposer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/parse_pdb_header.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Chain.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Polypeptide.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Structure.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/StructureAlignment.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/FragmentMapper.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Dice.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/Vector.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/PSEA.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/StructureBuilder.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/ResidueDepth.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-ia64-2.6/Bio/PDB/MMCIFParser.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-ia64-2.6/Bio/PDB/mmCIF/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-ia64-2.6/Bio/PDB/mmCIF/MMCIFlex.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen copying build/lib.linux-ia64-2.6/Bio/PopGen/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-ia64-2.6/Bio/PopGen/Async/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-ia64-2.6/Bio/PopGen/Async/Local.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-ia64-2.6/Bio/PopGen/FDist/Controller.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-ia64-2.6/Bio/PopGen/FDist/Async.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-ia64-2.6/Bio/PopGen/FDist/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-ia64-2.6/Bio/PopGen/FDist/Utils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-ia64-2.6/Bio/PopGen/GenePop/Controller.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-ia64-2.6/Bio/PopGen/GenePop/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-ia64-2.6/Bio/PopGen/GenePop/EasyController.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-ia64-2.6/Bio/PopGen/GenePop/Utils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/Controller.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/Async.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/Cache.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/Template.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/decline_split.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/split_island.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/bottle.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/island.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/simple.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/ssm_2d.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/ssm_1d.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-ia64-2.6/Bio/PopGen/SimCoal/data/decline_lambda.par -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-ia64-2.6/Bio/Prosite/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-ia64-2.6/Bio/Prosite/Pattern.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-ia64-2.6/Bio/Prosite/Prodoc.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/RanaConfig.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/PrintFormat.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/Restriction_Dictionary.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/DNAUtils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-ia64-2.6/Bio/Restriction/Restriction.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-ia64-2.6/Bio/Restriction/_Update/RestrictionCompiler.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-ia64-2.6/Bio/Restriction/_Update/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-ia64-2.6/Bio/Restriction/_Update/Update.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Dom.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Cla.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Residues.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Raf.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Hie.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-ia64-2.6/Bio/SCOP/Des.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/_convert.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/PhdIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/TabIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/AceIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/QualityIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/SwissIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/FastaIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/IgIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/InsdcIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/PirIO.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/Interfaces.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-ia64-2.6/Bio/SeqIO/_index.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/CodonUsageIndices.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/ProtParam.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/lcc.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/CheckSum.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/ProtParamData.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/IsoelectricPoint.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/MeltingTemp.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-ia64-2.6/Bio/SeqUtils/CodonUsage.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-ia64-2.6/Bio/Sequencing/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-ia64-2.6/Bio/Sequencing/Ace.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-ia64-2.6/Bio/Sequencing/Phd.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-ia64-2.6/Bio/Sequencing/Applications/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-ia64-2.6/Bio/Sequencing/Applications/_Novoalign.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-ia64-2.6/Bio/Statistics/lowess.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-ia64-2.6/Bio/Statistics/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-ia64-2.6/Bio/SubsMat/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-ia64-2.6/Bio/SubsMat/MatrixInfo.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-ia64-2.6/Bio/SubsMat/FreqTable.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-ia64-2.6/Bio/SVDSuperimposer/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-ia64-2.6/Bio/SVDSuperimposer/SVDSuperimposer.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-ia64-2.6/Bio/SwissProt/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-ia64-2.6/Bio/SwissProt/SProt.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-ia64-2.6/Bio/SwissProt/KeyWList.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-ia64-2.6/Bio/UniGene/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-ia64-2.6/Bio/UniGene/UniGene.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-ia64-2.6/Bio/Wise/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-ia64-2.6/Bio/Wise/dnal.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-ia64-2.6/Bio/Wise/psw.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-ia64-2.6/Bio/Affy/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-ia64-2.6/Bio/Affy/CelFile.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-ia64-2.6/Bio/Cluster/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-ia64-2.6/Bio/Cluster/cluster.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-ia64-2.6/Bio/KDTree/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-ia64-2.6/Bio/KDTree/KDTree.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-ia64-2.6/Bio/KDTree/_CKDTree.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-ia64-2.6/Bio/cpairwise2.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/trie.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-ia64-2.6/Bio/cMarkovModel.so -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-ia64-2.6/BioSQL/DBUtils.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-ia64-2.6/BioSQL/__init__.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-ia64-2.6/BioSQL/BioSeq.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-ia64-2.6/BioSQL/Loader.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-ia64-2.6/BioSQL/BioSeqDatabase.py -> /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/stringfns.py to stringfns.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/triefind.py to triefind.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/EZRetrieve.py to EZRetrieve.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Translate.py to Translate.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PropertyManager.py to PropertyManager.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Transcribe.py to Transcribe.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NetCatch.py to NetCatch.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/File.py to File.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ParserSupport.py to ParserSupport.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HotRand.py to HotRand.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FilteredReader.py to FilteredReader.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/listfns.py to listfns.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Search.py to Search.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/DocSQL.py to DocSQL.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/mathfns.py to mathfns.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Generic.py to Generic.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/FormatConvert.py to FormatConvert.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/AlignAceStandalone.py to AlignAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/CompareAceStandalone.py to CompareAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIStandalone.py to NCBIStandalone.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/IUPACEncoding.py to IUPACEncoding.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/FastaAlign.py to FastaAlign.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Organism.py to Organism.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Evolver.py to Evolver.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/TwoPoint.py to TwoPoint.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/GeneralPoint.py to GeneralPoint.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Uniform.py to Uniform.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Point.py to Point.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/Simple.py to 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/build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline/__init__.py to __init__.pyc 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Model.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/Local.py to Local.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Cache.py to Cache.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Template.py to Template.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/DNAUtils.py to DNAUtils.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/RestrictionCompiler.py to RestrictionCompiler.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/Update.py to Update.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/SVDSuperimposer.py to SVDSuperimposer.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/SProt.py to SProt.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/UniGene.py to UniGene.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc running install_egg_info Writing /build/buildd/python-biopython-1.53/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/biopython-1.53.egg-info dh_movefiles -ppython-biopython \ -ppython-biopython-sql \ --sourcedir=debian/python2.6-tmp dh_testdir dh_testroot dh_installdocs -a dh_installchangelogs -a dh_fixperms -a dh_compress -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform ia64: python-biopython dh_strip debug symbol extraction: packages to act on: python-biopython dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `python-biopython-dbgsym' in `../python-biopython-dbgsym_1.53-1_ia64.ddeb'. dh_pysupport -a dh_shlibdeps -a dpkg-shlibdeps: warning: dependency on libpthread.so.0 could be avoided if "debian/python-biopython/usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/MMCIFlex.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cMarkovModel.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/KDTree/_CKDTree.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/trie.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cpairwise2.so" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -a dh_md5sums -a dh_installdeb -a dh_builddeb -a pkgstriptranslations: processing control file: ./debian/python-biopython/DEBIAN/control, package python-biopython, directory ./debian/python-biopython pkgstriptranslations: python-biopython does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython' in `../python-biopython_1.53-1_ia64.deb'. dpkg-genchanges -B -mUbuntu/ia64 Build Daemon >../python-biopython_1.53-1_ia64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100108-0458 Publishing debug debs. chroot-autobuild/build/buildd/python-biopython_1.53-1_ia64.deb: new debian package, version 2.0. size 990024 bytes: control archive= 11961 bytes. 1359 bytes, 29 lines control 30329 bytes, 378 lines md5sums 193 bytes, 7 lines * postinst #!/bin/sh 196 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython Version: 1.53-1 Architecture: ia64 Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 5564 Depends: python (<< 2.7), python (>= 2.6), python-support (>= 0.90.0), libc6.1 (>= 2.3.4), python-numpy, python-reportlab Recommends: python-biopython-doc (= 1.53-1) Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Provides: python2.6-biopython Section: python Priority: optional Homepage: http://biopython.org Description: Python library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. Python-Version: 2.6 chroot-autobuild/build/buildd/python-biopython_1.53-1_ia64.deb: drwxr-xr-x root/root 0 2010-01-08 04:58 ./ drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/ drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/ drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/ drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/ -rw-r--r-- root/root 21872 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/cpairwise2.so drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/Motif/ -rw-r--r-- root/root 12880 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/Cluster/ -rw-r--r-- root/root 199256 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so drwxr-xr-x root/root 0 2010-01-08 04:58 ./usr/lib/pyshared/python2.6/Bio/PDB/ drwxr-xr-x root/root 0 2010-01-08 04:58 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15:30:37 +0000 Source: python-biopython Binary: python-biopython python-biopython-doc python-biopython-sql Architecture: ia64 Version: 1.53-1 Distribution: lucid Urgency: low Maintainer: Ubuntu/ia64 Build Daemon Changed-By: Philipp Benner Description: python-biopython - Python library for bioinformatics python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema Changes: python-biopython (1.53-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: c249ff98cafe142b364c047fe8f87aa545b3a216 990024 python-biopython_1.53-1_ia64.deb Checksums-Sha256: 3fc23e4b191a87b107effff4291ce7082e536c8bade1f40dcb6781bd9e1236a2 990024 python-biopython_1.53-1_ia64.deb Files: f3396ab398cbfe3c300b8113b72d3bf5 990024 python optional python-biopython_1.53-1_ia64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/python-biopython-1.53 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libglib2.0-0 mime-support m4 gettext file wise po-debconf python-numpy quilt python2.6 libcroco3 python-support libxml2 libpython2.6 libmysqlclient16 python-all-dev python-all python-dev man-db intltool-debian liblapack3gf python-reportlab html2text diffstat gettext-base flex python2.6-dev debhelper python libmagic1 libblas3gf python-central libgfortran3 libsqlite3-0 bsdmainutils libpcre3 python-mysqldb libncursesw5 mysql-common (Reading database ... 15466 files and directories currently installed.) 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Purging configuration files for mime-support ... Removing libpcre3 ... Purging configuration files for libpcre3 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100108-0458 Build needed 00:00:51, 35480k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1429570-2946629'] Scanning for processes to kill in build /home/buildd/build-1429570-2946629/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1429570-2946629'] Unmounting chroot for build 1429570-2946629... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1429570-2946629'] Removing build 1429570-2946629