RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1330792-2765345', '/home/buildd/filecache-default/753822e879ef2e4e3ce3566001863cd8bd3cbbf3'] Synching the system clock with the buildd NTP service... 9 Nov 02:52:07 ntpdate[6420]: adjust time server 10.211.37.1 offset -0.000019 sec Unpacking chroot for build 1330792-2765345 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1330792-2765345'] Mounting chroot for build 1330792-2765345 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1330792-2765345', 'universe'] Attempting OGRE for universe in build-1330792-2765345 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1330792-2765345', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1330792-2765345 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1330792-2765345'] Updating debian chroot for build 1330792-2765345 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [65.9kB] Get:3 http://ftpmaster.internal lucid/main Packages [1339kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5032kB] Fetched 6437kB in 8s (756kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: diffutils The following packages will be upgraded: base-files base-passwd binutils cpp-4.4 diff g++-4.4 gcc-4.4 gcc-4.4-base gcc-4.4-multilib insserv lib64gcc1 lib64gomp1 libacl1 libattr1 libc-bin libc-dev-bin libc6 libc6-dev libc6-dev-sparc64 libc6-sparc64 libgcc1 libgdbm3 libgomp1 libidn11 libkeyutils1 libsepol1 libstdc++6 libstdc++6-4.4-dev libtasn1-3 libtext-charwidth-perl libtext-iconv-perl libtimedate-perl libudev0 linux-libc-dev makedev python-minimal python2.6-minimal sed 38 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/29.7MB of archives. After this operation, 1180kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libc-dev-bin libc6-dev libc6-dev-sparc64 libc6-sparc64 libc-bin libc6 linux-libc-dev lib64gcc1 libgomp1 lib64gomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4-multilib gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 binutils base-passwd base-files diffutils diff sed python2.6-minimal python-minimal insserv libattr1 libacl1 libsepol1 libtext-charwidth-perl libtext-iconv-perl libudev0 libgdbm3 libidn11 libkeyutils1 libtasn1-3 libtimedate-perl makedev debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. (Reading database ... 10854 files and directories currently installed.) Preparing to replace libc-dev-bin 2.10.1-0ubuntu15 (using .../libc-dev-bin_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.10.1-0ubuntu15 (using .../libc6-dev_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc6-dev-sparc64 2.10.1-0ubuntu15 (using .../libc6-dev-sparc64_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc6-dev-sparc64 ... Preparing to replace libc6-sparc64 2.10.1-0ubuntu15 (using .../libc6-sparc64_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc6-sparc64 ... Preparing to replace libc-bin 2.10.1-0ubuntu15 (using .../libc-bin_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.10.1-3ubuntu1) ... (Reading database ... 10854 files and directories currently installed.) Preparing to replace libc6 2.10.1-0ubuntu15 (using .../libc6_2.10.1-3ubuntu1_sparc.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.10.1-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10854 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.31-14.48 (using .../linux-libc-dev_2.6.32-2.2_sparc.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace lib64gcc1 1:4.4.1-4ubuntu8 (using .../lib64gcc1_1%3a4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement lib64gcc1 ... Preparing to replace libgomp1 4.4.1-4ubuntu8 (using .../libgomp1_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace lib64gomp1 4.4.1-4ubuntu8 (using .../lib64gomp1_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement lib64gomp1 ... Preparing to replace cpp-4.4 4.4.1-4ubuntu8 (using .../cpp-4.4_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.1-4ubuntu8 (using .../gcc-4.4-base_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.2-1ubuntu3) ... (Reading database ... 10813 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.1-4ubuntu8 (using .../libgcc1_1%3a4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10813 files and directories currently installed.) Preparing to replace gcc-4.4-multilib 4.4.1-4ubuntu8 (using .../gcc-4.4-multilib_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement gcc-4.4-multilib ... Preparing to replace gcc-4.4 4.4.1-4ubuntu8 (using .../gcc-4.4_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.1-4ubuntu8 (using .../g++-4.4_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.1-4ubuntu8 (using .../libstdc++6-4.4-dev_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.1-4ubuntu8 (using .../libstdc++6_4.4.2-1ubuntu3_sparc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10824 files and directories currently installed.) Preparing to replace binutils 2.20-0ubuntu1 (using .../binutils_2.20-1ubuntu3_sparc.deb) ... Unpacking replacement binutils ... Preparing to replace base-passwd 3.5.21 (using .../base-passwd_3.5.22_sparc.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.22) ... (Reading database ... 10824 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu7 (using .../base-files_5.0.0ubuntu8_sparc.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously deselected package diffutils. (Reading database ... 10824 files and directories currently installed.) Unpacking diffutils (from .../diffutils_1%3a2.8.1-18_sparc.deb) ... Replacing files in old package diff ... Setting up diffutils (1:2.8.1-18) ... (Reading database ... 10829 files and directories currently installed.) Preparing to replace diff 2.8.1-13 (using .../diff_1%3a2.8.1-18_all.deb) ... Unpacking replacement diff ... Setting up diff (1:2.8.1-18) ... (Reading database ... 10827 files and directories currently installed.) Preparing to replace sed 4.2.1-1 (using .../archives/sed_4.2.1-3_sparc.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-3) ... (Reading database ... 10827 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.4~rc2-0ubuntu1 (using .../python2.6-minimal_2.6.4-1ubuntu1_sparc.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.4-1ubuntu1) ... (Reading database ... 10825 files and directories currently installed.) Preparing to replace python-minimal 2.6.4~rc1-0ubuntu1 (using .../python-minimal_2.6.4-0ubuntu2_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.6.4-0ubuntu2) ... (Reading database ... 10825 files and directories currently installed.) Preparing to replace insserv 1.12.0-11 (using .../insserv_1.12.0-14_sparc.deb) ... Unpacking replacement insserv ... Setting up insserv (1.12.0-14) ... (Reading database ... 10826 files and directories currently installed.) Preparing to replace libattr1 1:2.4.43-3 (using .../libattr1_1%3a2.4.44-1_sparc.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.44-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10826 files and directories currently installed.) Preparing to replace libacl1 2.2.47-2 (using .../libacl1_2.2.48-1_sparc.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.48-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10826 files and directories currently installed.) Preparing to replace libsepol1 2.0.37-1 (using .../libsepol1_2.0.39-1_sparc.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.39-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10826 files and directories currently installed.) Preparing to replace libtext-charwidth-perl 0.04-5build1 (using .../libtext-charwidth-perl_0.04-6_sparc.deb) ... Unpacking replacement libtext-charwidth-perl ... Setting up libtext-charwidth-perl (0.04-6) ... (Reading database ... 10826 files and directories currently installed.) Preparing to replace libtext-iconv-perl 1.7-1build1 (using .../libtext-iconv-perl_1.7-2_sparc.deb) ... Unpacking replacement libtext-iconv-perl ... Setting up libtext-iconv-perl (1.7-2) ... (Reading database ... 10827 files and directories currently installed.) Preparing to replace libudev0 147~-6 (using .../libudev0_147~-6.1_sparc.deb) ... Unpacking replacement libudev0 ... Setting up libudev0 (147~-6.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10827 files and directories currently installed.) Preparing to replace libgdbm3 1.8.3-4 (using .../libgdbm3_1.8.3-7_sparc.deb) ... Unpacking replacement libgdbm3 ... Preparing to replace libidn11 1.15-1 (using .../libidn11_1.15-2_sparc.deb) ... Unpacking replacement libidn11 ... Preparing to replace libkeyutils1 1.2-10 (using .../libkeyutils1_1.2-12_sparc.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace libtasn1-3 2.2-1 (using .../libtasn1-3_2.3-1_sparc.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libtimedate-perl 1.1600-9 (using .../libtimedate-perl_1.1900-1_all.deb) ... Unpacking replacement libtimedate-perl ... Preparing to replace makedev 2.3.1-88 (using .../makedev_2.3.1-89_all.deb) ... Unpacking replacement makedev ... Setting up libc-dev-bin (2.10.1-3ubuntu1) ... Setting up linux-libc-dev (2.6.32-2.2) ... Setting up libc6-dev (2.10.1-3ubuntu1) ... Setting up libc6-sparc64 (2.10.1-3ubuntu1) ... Setting up libc6-dev-sparc64 (2.10.1-3ubuntu1) ... Setting up lib64gcc1 (1:4.4.2-1ubuntu3) ... Setting up libgomp1 (4.4.2-1ubuntu3) ... Setting up lib64gomp1 (4.4.2-1ubuntu3) ... Setting up cpp-4.4 (4.4.2-1ubuntu3) ... Setting up binutils (2.20-1ubuntu3) ... Setting up gcc-4.4 (4.4.2-1ubuntu3) ... Setting up gcc-4.4-multilib (4.4.2-1ubuntu3) ... Setting up libgdbm3 (1.8.3-7) ... Setting up libidn11 (1.15-2) ... Setting up libkeyutils1 (1.2-12) ... Setting up libtasn1-3 (2.3-1) ... Setting up libtimedate-perl (1.1900-1) ... Setting up makedev (2.3.1-89) ... Setting up libstdc++6-4.4-dev (4.4.2-1ubuntu3) ... Setting up g++-4.4 (4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1330792-2765345', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=lucid', '--comp=universe', 'python-biopython_1.52-1.dsc'] Initiating build 1330792-2765345 with 0 processor cores. Automatic build of python-biopython_1.52-1 on sejong by sbuild/sparc 1.170.5 Build started at 20091109-0253 ****************************************************************************** python-biopython_1.52-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, python-reportlab, python-numpy, python-mysqldb, wise Checking for already installed source dependencies... debhelper: missing quilt: missing python-all-dev: missing flex: missing python-support: missing python-reportlab: missing python-numpy: missing python-mysqldb: missing wise: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt python-all-dev flex python-support python-reportlab python-numpy python-mysqldb wise Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils diffstat file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-central python-dev python2.6 python2.6-dev Suggested packages: wamerican wordlist whois vacation dh-make bison gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-profiler python-egenix-mxdatetime mysql-server-5.1 mysql-server python-mysqldb-dbg python-numpy-doc python-numpy-dbg python-nose pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.6-doc python2.6-profiler procmail graphviz wise-doc Recommended packages: curl wget lynx cvs libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl python-reportlab-accel python-renderpm python-imaging The following NEW packages will be installed: bsdmainutils debhelper diffstat file flex gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-all-dev python-central python-dev python-mysqldb python-numpy python-reportlab python-support python2.6 python2.6-dev quilt wise 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 4809kB/29.9MB of archives. After this operation, 89.7MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! m4 flex libmagic1 file libpcre3 libglib2.0-0 libncursesw5 libsqlite3-0 libxml2 mime-support python2.6 python python-central bsdmainutils gettext-base groff-base man-db python-support html2text libcroco3 gettext intltool-debian po-debconf debhelper diffstat libgfortran3 libblas3gf liblapack3gf mysql-common libmysqlclient16 libpython2.6 python-all python2.6-dev python-dev python-all-dev python-mysqldb python-numpy python-reportlab quilt wise Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main python-mysqldb 1.2.2-10 [97.4kB] Get:2 http://ftpmaster.internal lucid/main python-reportlab 2.3-0ubuntu1 [521kB] Get:3 http://ftpmaster.internal lucid/universe wise 2.4.1-7 [4190kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4809kB in 0s (11.5MB/s) Selecting previously deselected package m4. (Reading database ... 10842 files and directories currently installed.) Unpacking m4 (from .../archives/m4_1.4.13-2_sparc.deb) ... Selecting previously deselected package flex. Unpacking flex (from .../flex_2.5.35-7ubuntu1_sparc.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_sparc.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_sparc.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_7.8-3_sparc.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.22.2-0ubuntu1_sparc.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090803-2ubuntu2_sparc.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.16-1ubuntu1_sparc.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.5.dfsg-1ubuntu1_sparc.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.46-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.4-1ubuntu1_sparc.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-central. Unpacking python-central (from .../python-central_0.6.11ubuntu9_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_sparc.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu2_sparc.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-6_sparc.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.6-3_sparc.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.3ubuntu2_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_sparc.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_sparc.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-8ubuntu2_sparc.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.3ubuntu2_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1_sparc.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.2-1ubuntu3_sparc.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-2_sparc.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-2_sparc.deb) ... Selecting previously deselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.1.37-1ubuntu5_all.deb) ... Selecting previously deselected package libmysqlclient16. Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.37-1ubuntu5_sparc.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.4-1ubuntu1_sparc.deb) ... Selecting previously deselected package python-all. Unpacking python-all (from .../python-all_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.4-1ubuntu1_sparc.deb) ... Selecting previously deselected package python-dev. Unpacking python-dev (from .../python-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-mysqldb. Unpacking python-mysqldb (from .../python-mysqldb_1.2.2-10_sparc.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.3.0-3_sparc.deb) ... Selecting previously deselected package python-reportlab. Unpacking python-reportlab (from .../python-reportlab_2.3-0ubuntu1_all.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.46-8ubuntu1_all.deb) ... Selecting previously deselected package wise. Unpacking wise (from .../wise_2.4.1-7_sparc.deb) ... Setting up m4 (1.4.13-2) ... Setting up flex (2.5.35-7ubuntu1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package flex should be updated. Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up libpcre3 (7.8-3) ... Setting up libglib2.0-0 (2.22.2-0ubuntu1) ... Setting up libncursesw5 (5.7+20090803-2ubuntu2) ... Setting up libsqlite3-0 (3.6.16-1ubuntu1) ... Setting up libxml2 (2.7.5.dfsg-1ubuntu1) ... Setting up mime-support (3.46-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.4-1ubuntu1) ... Setting up python (2.6.4-0ubuntu2) ... Setting up python-central (0.6.11ubuntu9) ... Setting up bsdmainutils (6.1.10ubuntu4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu2) ... Setting up groff-base (1.20.1-6) ... Setting up man-db (2.5.6-3) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up python-support (1.0.3ubuntu2) ... Setting up html2text (1.3.2a-14) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.3ubuntu2) ... Setting up diffstat (1.47-1) ... Setting up libgfortran3 (4.4.2-1ubuntu3) ... Setting up libblas3gf (1.2-2) ... Setting up liblapack3gf (3.2.1-2) ... Setting up mysql-common (5.1.37-1ubuntu5) ... Setting up libmysqlclient16 (5.1.37-1ubuntu5) ... Setting up libpython2.6 (2.6.4-1ubuntu1) ... Setting up python-all (2.6.4-0ubuntu2) ... Setting up python2.6-dev (2.6.4-1ubuntu1) ... Setting up python-dev (2.6.4-0ubuntu2) ... Setting up python-all-dev (2.6.4-0ubuntu2) ... Setting up python-mysqldb (1.2.2-10) ... Setting up python-numpy (1:1.3.0-3) ... Setting up python-reportlab (2.3-0ubuntu1) ... Setting up quilt (0.46-8ubuntu1) ... Setting up wise (2.4.1-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.10.1-3ubuntu1 make_3.81-6 dpkg-dev_1.15.4ubuntu2 g++-4.4_4.4.2-1ubuntu3 gcc-4.4_4.4.2-1ubuntu3 binutils_2.20-1ubuntu3 libstdc++6_4.4.2-1ubuntu3 libstdc++6-4.4-dev_4.4.2-1ubuntu3 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Wed Sep 30 13:10:41 2009 BST using DSA key ID EB88E930 gpg: Can't check signature: public key not found dpkg-source: extracting python-biopython in python-biopython-1.52 dpkg-source: unpacking python-biopython_1.52.orig.tar.gz dpkg-source: applying /home/buildd/build-1330792-2765345/python-biopython_1.52-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.52-1 dpkg-buildpackage: host architecture sparc /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot python2.6 setup.py clean running clean rm -f -r debian/python2.6-tmp dh_testdir dh_testroot dh_clean rm -f build-stamp rm -f Tests/*.pyc rm -f Tests/Graphics/*.eps rm -f Tests/Graphics/*.pdf rm -f Tests/dump rm -f Tests/NeuralNetwork/patternio.txt rm -f -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx rm -f -r build debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 01-enable-mmCIF.patch patching file setup.py Hunk #1 succeeded at 302 (offset -38 lines). Now at patch 01-enable-mmCIF.patch touch debian/stamp-patched echo sparc sparc yes | python2.6 setup.py build running build running build_py creating build creating build/lib.linux-sparc-2.6 creating build/lib.linux-sparc-2.6/Bio copying Bio/Transcribe.py -> build/lib.linux-sparc-2.6/Bio copying Bio/pairwise2.py -> build/lib.linux-sparc-2.6/Bio copying Bio/MarkovModel.py -> build/lib.linux-sparc-2.6/Bio copying Bio/Search.py -> build/lib.linux-sparc-2.6/Bio copying Bio/EZRetrieve.py -> build/lib.linux-sparc-2.6/Bio copying Bio/DocSQL.py -> build/lib.linux-sparc-2.6/Bio copying Bio/mathfns.py -> build/lib.linux-sparc-2.6/Bio copying Bio/utils.py -> build/lib.linux-sparc-2.6/Bio copying Bio/SeqFeature.py -> build/lib.linux-sparc-2.6/Bio copying Bio/Translate.py -> build/lib.linux-sparc-2.6/Bio copying Bio/HotRand.py -> build/lib.linux-sparc-2.6/Bio copying Bio/MaxEntropy.py -> build/lib.linux-sparc-2.6/Bio copying Bio/File.py -> build/lib.linux-sparc-2.6/Bio copying Bio/Seq.py -> build/lib.linux-sparc-2.6/Bio copying Bio/distance.py -> build/lib.linux-sparc-2.6/Bio copying Bio/FilteredReader.py -> build/lib.linux-sparc-2.6/Bio copying Bio/stringfns.py -> build/lib.linux-sparc-2.6/Bio copying Bio/__init__.py -> build/lib.linux-sparc-2.6/Bio copying Bio/ParserSupport.py -> build/lib.linux-sparc-2.6/Bio copying Bio/Index.py -> build/lib.linux-sparc-2.6/Bio copying Bio/NetCatch.py -> build/lib.linux-sparc-2.6/Bio copying Bio/SeqRecord.py -> build/lib.linux-sparc-2.6/Bio copying Bio/PubMed.py -> build/lib.linux-sparc-2.6/Bio copying Bio/NaiveBayes.py -> build/lib.linux-sparc-2.6/Bio copying Bio/listfns.py -> build/lib.linux-sparc-2.6/Bio copying Bio/triefind.py -> build/lib.linux-sparc-2.6/Bio copying Bio/LogisticRegression.py -> build/lib.linux-sparc-2.6/Bio copying Bio/kNN.py -> build/lib.linux-sparc-2.6/Bio copying Bio/PropertyManager.py -> build/lib.linux-sparc-2.6/Bio creating build/lib.linux-sparc-2.6/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-sparc-2.6/Bio/Align copying Bio/Align/FormatConvert.py -> build/lib.linux-sparc-2.6/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-sparc-2.6/Bio/Align copying Bio/Align/Generic.py -> build/lib.linux-sparc-2.6/Bio/Align creating build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-sparc-2.6/Bio/Align/Applications creating build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-sparc-2.6/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-sparc-2.6/Bio/AlignIO creating build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/Motif.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/__init__.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/Parser.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/CompareAceStandalone.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/AlignAceStandalone.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/Applications.py -> build/lib.linux-sparc-2.6/Bio/AlignAce copying Bio/AlignAce/Scanner.py -> build/lib.linux-sparc-2.6/Bio/AlignAce creating build/lib.linux-sparc-2.6/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-sparc-2.6/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> build/lib.linux-sparc-2.6/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> build/lib.linux-sparc-2.6/Bio/Alphabet creating build/lib.linux-sparc-2.6/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-sparc-2.6/Bio/Application creating build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-sparc-2.6/Bio/Blast copying Bio/Blast/Record.py -> build/lib.linux-sparc-2.6/Bio/Blast creating build/lib.linux-sparc-2.6/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-sparc-2.6/Bio/CAPS creating build/lib.linux-sparc-2.6/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-sparc-2.6/Bio/Compass creating build/lib.linux-sparc-2.6/Bio/Clustalw copying Bio/Clustalw/__init__.py -> build/lib.linux-sparc-2.6/Bio/Clustalw creating build/lib.linux-sparc-2.6/Bio/Crystal copying Bio/Crystal/__init__.py -> build/lib.linux-sparc-2.6/Bio/Crystal creating build/lib.linux-sparc-2.6/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-sparc-2.6/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-sparc-2.6/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-sparc-2.6/Bio/Data creating build/lib.linux-sparc-2.6/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-sparc-2.6/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-sparc-2.6/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-sparc-2.6/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-sparc-2.6/Bio/Emboss creating build/lib.linux-sparc-2.6/Bio/Encodings copying Bio/Encodings/IUPACEncoding.py -> build/lib.linux-sparc-2.6/Bio/Encodings copying Bio/Encodings/__init__.py -> build/lib.linux-sparc-2.6/Bio/Encodings creating build/lib.linux-sparc-2.6/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-sparc-2.6/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-sparc-2.6/Bio/Entrez creating build/lib.linux-sparc-2.6/Bio/Enzyme copying Bio/Enzyme/__init__.py -> build/lib.linux-sparc-2.6/Bio/Enzyme creating build/lib.linux-sparc-2.6/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-sparc-2.6/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-sparc-2.6/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-sparc-2.6/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-sparc-2.6/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-sparc-2.6/Bio/ExPASy creating build/lib.linux-sparc-2.6/Bio/Fasta copying Bio/Fasta/FastaAlign.py -> build/lib.linux-sparc-2.6/Bio/Fasta copying Bio/Fasta/__init__.py -> build/lib.linux-sparc-2.6/Bio/Fasta creating build/lib.linux-sparc-2.6/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> build/lib.linux-sparc-2.6/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> build/lib.linux-sparc-2.6/Bio/FSSP copying Bio/FSSP/__init__.py -> build/lib.linux-sparc-2.6/Bio/FSSP creating build/lib.linux-sparc-2.6/Bio/GA copying Bio/GA/Evolver.py -> build/lib.linux-sparc-2.6/Bio/GA copying Bio/GA/__init__.py -> build/lib.linux-sparc-2.6/Bio/GA copying Bio/GA/Organism.py -> build/lib.linux-sparc-2.6/Bio/GA creating build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-sparc-2.6/Bio/GA/Crossover creating build/lib.linux-sparc-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> build/lib.linux-sparc-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> build/lib.linux-sparc-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> build/lib.linux-sparc-2.6/Bio/GA/Mutation creating build/lib.linux-sparc-2.6/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> build/lib.linux-sparc-2.6/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-sparc-2.6/Bio/GA/Repair creating build/lib.linux-sparc-2.6/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> build/lib.linux-sparc-2.6/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-sparc-2.6/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> build/lib.linux-sparc-2.6/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> build/lib.linux-sparc-2.6/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> build/lib.linux-sparc-2.6/Bio/GA/Selection creating build/lib.linux-sparc-2.6/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-sparc-2.6/Bio/GenBank copying Bio/GenBank/LocationParser.py -> build/lib.linux-sparc-2.6/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-sparc-2.6/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-sparc-2.6/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-sparc-2.6/Bio/GenBank creating build/lib.linux-sparc-2.6/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-sparc-2.6/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-sparc-2.6/Bio/Geo creating build/lib.linux-sparc-2.6/Bio/GFF copying Bio/GFF/easy.py -> build/lib.linux-sparc-2.6/Bio/GFF copying Bio/GFF/GenericTools.py -> build/lib.linux-sparc-2.6/Bio/GFF copying Bio/GFF/__init__.py -> build/lib.linux-sparc-2.6/Bio/GFF copying Bio/GFF/binning.py -> build/lib.linux-sparc-2.6/Bio/GFF creating build/lib.linux-sparc-2.6/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-sparc-2.6/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-sparc-2.6/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-sparc-2.6/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-sparc-2.6/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-sparc-2.6/Bio/Graphics creating build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram creating build/lib.linux-sparc-2.6/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-sparc-2.6/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-sparc-2.6/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-sparc-2.6/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-sparc-2.6/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-sparc-2.6/Bio/HMM creating build/lib.linux-sparc-2.6/Bio/InterPro copying Bio/InterPro/__init__.py -> build/lib.linux-sparc-2.6/Bio/InterPro creating build/lib.linux-sparc-2.6/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-sparc-2.6/Bio/KEGG creating build/lib.linux-sparc-2.6/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-sparc-2.6/Bio/KEGG/Compound creating build/lib.linux-sparc-2.6/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-sparc-2.6/Bio/KEGG/Enzyme creating build/lib.linux-sparc-2.6/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-sparc-2.6/Bio/KEGG/Map creating build/lib.linux-sparc-2.6/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-sparc-2.6/Bio/Medline creating build/lib.linux-sparc-2.6/Bio/MEME copying Bio/MEME/Motif.py -> build/lib.linux-sparc-2.6/Bio/MEME copying Bio/MEME/__init__.py -> build/lib.linux-sparc-2.6/Bio/MEME copying Bio/MEME/Parser.py -> build/lib.linux-sparc-2.6/Bio/MEME creating build/lib.linux-sparc-2.6/Bio/Motif copying Bio/Motif/_Motif.py -> build/lib.linux-sparc-2.6/Bio/Motif copying Bio/Motif/Thresholds.py -> build/lib.linux-sparc-2.6/Bio/Motif copying Bio/Motif/__init__.py -> build/lib.linux-sparc-2.6/Bio/Motif creating build/lib.linux-sparc-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> build/lib.linux-sparc-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> build/lib.linux-sparc-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> build/lib.linux-sparc-2.6/Bio/Motif/Parsers creating build/lib.linux-sparc-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/_AlignAce.py -> build/lib.linux-sparc-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> build/lib.linux-sparc-2.6/Bio/Motif/Applications creating build/lib.linux-sparc-2.6/Bio/Ndb copying Bio/Ndb/__init__.py -> build/lib.linux-sparc-2.6/Bio/Ndb creating build/lib.linux-sparc-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork creating build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation creating build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene creating build/lib.linux-sparc-2.6/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-sparc-2.6/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-sparc-2.6/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-sparc-2.6/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-sparc-2.6/Bio/Nexus creating build/lib.linux-sparc-2.6/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-sparc-2.6/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-sparc-2.6/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-sparc-2.6/Bio/NMR creating build/lib.linux-sparc-2.6/Bio/Parsers copying Bio/Parsers/__init__.py -> build/lib.linux-sparc-2.6/Bio/Parsers copying Bio/Parsers/spark.py -> build/lib.linux-sparc-2.6/Bio/Parsers creating build/lib.linux-sparc-2.6/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-sparc-2.6/Bio/Pathway creating build/lib.linux-sparc-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-sparc-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-sparc-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-sparc-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/HashSet.py -> build/lib.linux-sparc-2.6/Bio/Pathway/Rep creating build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Vector.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-sparc-2.6/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-sparc-2.6/Bio/PDB creating build/lib.linux-sparc-2.6/Bio/PDB/mmCIF copying Bio/PDB/mmCIF/__init__.py -> build/lib.linux-sparc-2.6/Bio/PDB/mmCIF creating build/lib.linux-sparc-2.6/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-sparc-2.6/Bio/PopGen creating build/lib.linux-sparc-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> build/lib.linux-sparc-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> build/lib.linux-sparc-2.6/Bio/PopGen/Async creating build/lib.linux-sparc-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> build/lib.linux-sparc-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> build/lib.linux-sparc-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> build/lib.linux-sparc-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> build/lib.linux-sparc-2.6/Bio/PopGen/FDist creating build/lib.linux-sparc-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-sparc-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-sparc-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> build/lib.linux-sparc-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-sparc-2.6/Bio/PopGen/GenePop creating build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal creating build/lib.linux-sparc-2.6/Bio/Prosite copying Bio/Prosite/Prodoc.py -> build/lib.linux-sparc-2.6/Bio/Prosite copying Bio/Prosite/__init__.py -> build/lib.linux-sparc-2.6/Bio/Prosite copying Bio/Prosite/Pattern.py -> build/lib.linux-sparc-2.6/Bio/Prosite creating build/lib.linux-sparc-2.6/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-sparc-2.6/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-sparc-2.6/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-sparc-2.6/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> build/lib.linux-sparc-2.6/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-sparc-2.6/Bio/Restriction creating build/lib.linux-sparc-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/__init__.py -> build/lib.linux-sparc-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/RestrictionCompiler.py -> build/lib.linux-sparc-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/Update.py -> build/lib.linux-sparc-2.6/Bio/Restriction/_Update creating build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/FileIndex.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-sparc-2.6/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-sparc-2.6/Bio/SCOP creating build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/_convert.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-sparc-2.6/Bio/SeqIO creating build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-sparc-2.6/Bio/SeqUtils creating build/lib.linux-sparc-2.6/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-sparc-2.6/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-sparc-2.6/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-sparc-2.6/Bio/Sequencing creating build/lib.linux-sparc-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-sparc-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-sparc-2.6/Bio/Sequencing/Applications creating build/lib.linux-sparc-2.6/Bio/Statistics copying Bio/Statistics/__init__.py -> build/lib.linux-sparc-2.6/Bio/Statistics copying Bio/Statistics/lowess.py -> build/lib.linux-sparc-2.6/Bio/Statistics creating build/lib.linux-sparc-2.6/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.linux-sparc-2.6/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.linux-sparc-2.6/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.linux-sparc-2.6/Bio/SubsMat creating build/lib.linux-sparc-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/SVDSuperimposer.py -> build/lib.linux-sparc-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-sparc-2.6/Bio/SVDSuperimposer creating build/lib.linux-sparc-2.6/Bio/SwissProt copying Bio/SwissProt/SProt.py -> build/lib.linux-sparc-2.6/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-sparc-2.6/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-sparc-2.6/Bio/SwissProt creating build/lib.linux-sparc-2.6/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-sparc-2.6/Bio/UniGene creating build/lib.linux-sparc-2.6/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.linux-sparc-2.6/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.linux-sparc-2.6/Bio/Wise copying Bio/Wise/psw.py -> build/lib.linux-sparc-2.6/Bio/Wise creating build/lib.linux-sparc-2.6/Bio/WWW copying Bio/WWW/__init__.py -> build/lib.linux-sparc-2.6/Bio/WWW creating build/lib.linux-sparc-2.6/BioSQL copying BioSQL/__init__.py -> build/lib.linux-sparc-2.6/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-sparc-2.6/BioSQL copying BioSQL/Loader.py -> build/lib.linux-sparc-2.6/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-sparc-2.6/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-sparc-2.6/BioSQL creating build/lib.linux-sparc-2.6/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-sparc-2.6/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-sparc-2.6/Bio/Affy creating build/lib.linux-sparc-2.6/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-sparc-2.6/Bio/Cluster creating build/lib.linux-sparc-2.6/Bio/KDTree copying Bio/KDTree/__init__.py -> build/lib.linux-sparc-2.6/Bio/KDTree copying Bio/KDTree/KDTree.py -> build/lib.linux-sparc-2.6/Bio/KDTree creating build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_020511.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-sparc-2.6/Bio/Entrez/DTDs creating build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data running build_ext building 'Bio.clistfns' extension creating build/temp.linux-sparc-2.6 creating build/temp.linux-sparc-2.6/Bio gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/clistfnsmodule.c -o build/temp.linux-sparc-2.6/Bio/clistfnsmodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/clistfnsmodule.o -o build/lib.linux-sparc-2.6/Bio/clistfns.so building 'Bio.cmathfns' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cmathfnsmodule.c -o build/temp.linux-sparc-2.6/Bio/cmathfnsmodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/csupport.c -o build/temp.linux-sparc-2.6/Bio/csupport.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/cmathfnsmodule.o build/temp.linux-sparc-2.6/Bio/csupport.o -o build/lib.linux-sparc-2.6/Bio/cmathfns.so building 'Bio.cstringfns' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/cstringfnsmodule.c -o build/temp.linux-sparc-2.6/Bio/cstringfnsmodule.o Bio/cstringfnsmodule.c: In function 'cstringfns_splitany': Bio/cstringfnsmodule.c:34: warning: pointer targets in initialization differ in signedness Bio/cstringfnsmodule.c:71: warning: pointer targets in passing argument 1 of 'PyString_FromStringAndSize' differ in signedness /usr/include/python2.6/stringobject.h:62: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/cstringfnsmodule.c:85: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/cstringfnsmodule.c:87: warning: pointer targets in passing argument 1 of 'PyString_FromStringAndSize' differ in signedness /usr/include/python2.6/stringobject.h:62: note: expected 'const char *' but argument is of type 'unsigned char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/cstringfnsmodule.o -o build/lib.linux-sparc-2.6/Bio/cstringfns.so building 'Bio.cpairwise2' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cpairwise2module.c -o build/temp.linux-sparc-2.6/Bio/cpairwise2module.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/cpairwise2module.o build/temp.linux-sparc-2.6/Bio/csupport.o -o build/lib.linux-sparc-2.6/Bio/cpairwise2.so building 'Bio.trie' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/triemodule.c -o build/temp.linux-sparc-2.6/Bio/triemodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/trie.c -o build/temp.linux-sparc-2.6/Bio/trie.o Bio/trie.c: In function 'Trie_set': Bio/trie.c:103: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:103: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:156: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 1 of 'strncpy' differ in signedness /usr/include/bits/string3.h:119: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 2 of 'strncpy' differ in signedness /usr/include/bits/string3.h:119: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'Trie_get': Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:235: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_get_approximate_transition': Bio/trie.c:268: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c: In function '_get_approximate_trie': Bio/trie.c:353: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:355: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:367: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:369: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c: In function 'Trie_has_prefix': Bio/trie.c:440: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:441: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_iterate_helper': Bio/trie.c:468: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:470: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_with_prefix_helper': Bio/trie.c:521: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:522: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:530: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_serialize_transition': Bio/trie.c:621: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_deserialize_transition': Bio/trie.c:708: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:708: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'test': Bio/trie.c:752: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:753: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:754: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:755: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:757: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:758: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:759: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:760: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:762: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:763: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:765: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:768: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:769: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/triemodule.o build/temp.linux-sparc-2.6/Bio/trie.o -o build/lib.linux-sparc-2.6/Bio/trie.so building 'Bio.cMarkovModel' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cMarkovModelmodule.c -o build/temp.linux-sparc-2.6/Bio/cMarkovModelmodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/cMarkovModelmodule.o build/temp.linux-sparc-2.6/Bio/csupport.o -o build/lib.linux-sparc-2.6/Bio/cMarkovModel.so building 'Bio.PDB.mmCIF.MMCIFlex' extension creating build/temp.linux-sparc-2.6/Bio/PDB creating build/temp.linux-sparc-2.6/Bio/PDB/mmCIF gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/lex.yy.c -o build/temp.linux-sparc-2.6/Bio/PDB/mmCIF/lex.yy.o mmcif.lex:52: warning: function declaration isn't a prototype lex.yy.c:1040: warning: 'yyunput' defined but not used lex.yy.c:1086: warning: 'input' defined but not used gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/MMCIFlexmodule.c -o build/temp.linux-sparc-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_open_file': Bio/PDB/mmCIF/MMCIFlexmodule.c:16: warning: implicit declaration of function 'mmcif_set_file' Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_get_token': Bio/PDB/mmCIF/MMCIFlexmodule.c:44: warning: implicit declaration of function 'mmcif_get_token' Bio/PDB/mmCIF/MMCIFlexmodule.c: At top level: Bio/PDB/mmCIF/MMCIFlexmodule.c:67: warning: function declaration isn't a prototype gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/PDB/mmCIF/lex.yy.o build/temp.linux-sparc-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o -lfl -o build/lib.linux-sparc-2.6/Bio/PDB/mmCIF/MMCIFlex.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-sparc-2.6/Bio/Nexus gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Nexus/cnexus.c -o build/temp.linux-sparc-2.6/Bio/Nexus/cnexus.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/Nexus/cnexus.o -o build/lib.linux-sparc-2.6/Bio/Nexus/cnexus.so building 'Bio.Restriction.DNAUtils' extension creating build/temp.linux-sparc-2.6/Bio/Restriction gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Restriction/DNAUtils.c -o build/temp.linux-sparc-2.6/Bio/Restriction/DNAUtils.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/Restriction/DNAUtils.o -o build/lib.linux-sparc-2.6/Bio/Restriction/DNAUtils.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-sparc-2.6/Bio/Cluster gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/clustermodule.c -o build/temp.linux-sparc-2.6/Bio/Cluster/clustermodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/cluster.c -o build/temp.linux-sparc-2.6/Bio/Cluster/cluster.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/Cluster/clustermodule.o build/temp.linux-sparc-2.6/Bio/Cluster/cluster.o -o build/lib.linux-sparc-2.6/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-sparc-2.6/Bio/KDTree gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTree.c -o build/temp.linux-sparc-2.6/Bio/KDTree/KDTree.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-sparc-2.6/Bio/KDTree/KDTreemodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/KDTree/KDTree.o build/temp.linux-sparc-2.6/Bio/KDTree/KDTreemodule.o -o build/lib.linux-sparc-2.6/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-sparc-2.6/Bio/Motif gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Motif/_pwm.c -o build/temp.linux-sparc-2.6/Bio/Motif/_pwm.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-sparc-2.6/Bio/Motif/_pwm.o -o build/lib.linux-sparc-2.6/Bio/Motif/_pwm.so touch build-stamp /usr/bin/fakeroot debian/rules binary-arch echo sparc sparc yes | python2.6 setup.py build running build running build_py running build_ext touch build-stamp dh_testdir dh_testroot yes | python2.6 setup.py install --root /build/buildd/python-biopython-1.52/debian/python2.6-tmp --install-layout=deb running install running build running build_py running build_ext running install_lib creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6 creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/Transcribe.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/pairwise2.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/MarkovModel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/Search.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/EZRetrieve.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/DocSQL.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/mathfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/SeqFeature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/Translate.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/HotRand.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/MaxEntropy.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/File.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/Seq.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/distance.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/FilteredReader.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/stringfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/ParserSupport.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/Index.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/NetCatch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/SeqRecord.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/PubMed.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/NaiveBayes.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/listfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/triefind.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/LogisticRegression.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/kNN.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/PropertyManager.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-sparc-2.6/Bio/Align/AlignInfo.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-sparc-2.6/Bio/Align/FormatConvert.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-sparc-2.6/Bio/Align/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-sparc-2.6/Bio/Align/Generic.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Muscle.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_TCoffee.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Prank.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Dialign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Clustalw.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Probcons.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-sparc-2.6/Bio/Align/Applications/_Mafft.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/NexusIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/EmbossIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/ClustalIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/StockholmIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/FastaIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/Interfaces.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-sparc-2.6/Bio/AlignIO/PhylipIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/CompareAceStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/AlignAceStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-sparc-2.6/Bio/AlignAce/Scanner.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-sparc-2.6/Bio/Alphabet/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-sparc-2.6/Bio/Alphabet/IUPAC.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-sparc-2.6/Bio/Alphabet/Reduced.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application copying build/lib.linux-sparc-2.6/Bio/Application/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/NCBIStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/NCBIWWW.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/NCBIXML.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/ParseBlastTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-sparc-2.6/Bio/Blast/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS copying build/lib.linux-sparc-2.6/Bio/CAPS/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass copying build/lib.linux-sparc-2.6/Bio/Compass/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw copying build/lib.linux-sparc-2.6/Bio/Clustalw/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal copying build/lib.linux-sparc-2.6/Bio/Crystal/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-sparc-2.6/Bio/Data/IUPACData.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-sparc-2.6/Bio/Data/CodonTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-sparc-2.6/Bio/Data/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-sparc-2.6/Bio/Emboss/PrimerSearch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-sparc-2.6/Bio/Emboss/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-sparc-2.6/Bio/Emboss/Primer3.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-sparc-2.6/Bio/Emboss/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-sparc-2.6/Bio/Encodings/IUPACEncoding.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-sparc-2.6/Bio/Encodings/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-sparc-2.6/Bio/Entrez/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-sparc-2.6/Bio/Entrez/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/taxon.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/egquery.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/eSpell.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/eLink_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-sparc-2.6/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme copying build/lib.linux-sparc-2.6/Bio/Enzyme/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-sparc-2.6/Bio/ExPASy/Enzyme.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-sparc-2.6/Bio/ExPASy/Prodoc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-sparc-2.6/Bio/ExPASy/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-sparc-2.6/Bio/ExPASy/Prosite.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-sparc-2.6/Bio/ExPASy/ScanProsite.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-sparc-2.6/Bio/Fasta/FastaAlign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-sparc-2.6/Bio/Fasta/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-sparc-2.6/Bio/FSSP/fssp_rec.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-sparc-2.6/Bio/FSSP/FSSPTools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-sparc-2.6/Bio/FSSP/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-sparc-2.6/Bio/GA/Evolver.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-sparc-2.6/Bio/GA/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-sparc-2.6/Bio/GA/Organism.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/GeneralPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/Point.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/TwoPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/General.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-sparc-2.6/Bio/GA/Crossover/Uniform.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-sparc-2.6/Bio/GA/Mutation/Simple.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-sparc-2.6/Bio/GA/Mutation/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-sparc-2.6/Bio/GA/Mutation/General.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-sparc-2.6/Bio/GA/Repair/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-sparc-2.6/Bio/GA/Repair/Stabilizing.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-sparc-2.6/Bio/GA/Selection/Diversity.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-sparc-2.6/Bio/GA/Selection/RouletteWheel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-sparc-2.6/Bio/GA/Selection/Abstract.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-sparc-2.6/Bio/GA/Selection/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-sparc-2.6/Bio/GA/Selection/Tournament.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-sparc-2.6/Bio/GenBank/utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-sparc-2.6/Bio/GenBank/LocationParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-sparc-2.6/Bio/GenBank/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-sparc-2.6/Bio/GenBank/Scanner.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-sparc-2.6/Bio/GenBank/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-sparc-2.6/Bio/Geo/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-sparc-2.6/Bio/Geo/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-sparc-2.6/Bio/GFF/easy.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-sparc-2.6/Bio/GFF/GenericTools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-sparc-2.6/Bio/GFF/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-sparc-2.6/Bio/GFF/binning.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-sparc-2.6/Bio/Graphics/DisplayRepresentation.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-sparc-2.6/Bio/Graphics/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-sparc-2.6/Bio/Graphics/Distribution.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-sparc-2.6/Bio/Graphics/BasicChromosome.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-sparc-2.6/Bio/Graphics/Comparative.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_Track.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-sparc-2.6/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-sparc-2.6/Bio/HMM/MarkovModel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-sparc-2.6/Bio/HMM/Utilities.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-sparc-2.6/Bio/HMM/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-sparc-2.6/Bio/HMM/DynamicProgramming.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-sparc-2.6/Bio/HMM/Trainer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro copying build/lib.linux-sparc-2.6/Bio/InterPro/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG copying build/lib.linux-sparc-2.6/Bio/KEGG/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound copying build/lib.linux-sparc-2.6/Bio/KEGG/Compound/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme copying build/lib.linux-sparc-2.6/Bio/KEGG/Enzyme/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map copying build/lib.linux-sparc-2.6/Bio/KEGG/Map/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline copying build/lib.linux-sparc-2.6/Bio/Medline/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-sparc-2.6/Bio/MEME/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-sparc-2.6/Bio/MEME/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-sparc-2.6/Bio/MEME/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-sparc-2.6/Bio/Motif/_Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-sparc-2.6/Bio/Motif/Thresholds.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-sparc-2.6/Bio/Motif/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-sparc-2.6/Bio/Motif/Parsers/AlignAce.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-sparc-2.6/Bio/Motif/Parsers/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-sparc-2.6/Bio/Motif/Parsers/MEME.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-sparc-2.6/Bio/Motif/Applications/_AlignAce.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-sparc-2.6/Bio/Motif/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-sparc-2.6/Bio/Motif/_pwm.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb copying build/lib.linux-sparc-2.6/Bio/Ndb/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Training.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/StopTraining.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation/Layer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/BackPropagation/Network.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene/Schema.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene/Pattern.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-sparc-2.6/Bio/NeuralNetwork/Gene/Signature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-sparc-2.6/Bio/Nexus/Nexus.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-sparc-2.6/Bio/Nexus/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-sparc-2.6/Bio/Nexus/Trees.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-sparc-2.6/Bio/Nexus/Nodes.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-sparc-2.6/Bio/Nexus/cnexus.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-sparc-2.6/Bio/NMR/NOEtools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-sparc-2.6/Bio/NMR/xpktools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-sparc-2.6/Bio/NMR/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-sparc-2.6/Bio/Parsers/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-sparc-2.6/Bio/Parsers/spark.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway copying build/lib.linux-sparc-2.6/Bio/Pathway/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-sparc-2.6/Bio/Pathway/Rep/Graph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-sparc-2.6/Bio/Pathway/Rep/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-sparc-2.6/Bio/Pathway/Rep/MultiGraph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-sparc-2.6/Bio/Pathway/Rep/HashSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/PDBParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Selection.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Polypeptide.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/StructureBuilder.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/MMCIFParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Dice.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Residue.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/StructureAlignment.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Chain.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/PDBExceptions.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/AbstractPropertyMap.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/NeighborSearch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/PDBList.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/NACCESS.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/FragmentMapper.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/PSEA.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/ResidueDepth.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/DSSP.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Model.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Entity.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Atom.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Vector.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Superimposer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/parse_pdb_header.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/HSExposure.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/PDBIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/MMCIF2Dict.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-sparc-2.6/Bio/PDB/Structure.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-sparc-2.6/Bio/PDB/mmCIF/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-sparc-2.6/Bio/PDB/mmCIF/MMCIFlex.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen copying build/lib.linux-sparc-2.6/Bio/PopGen/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-sparc-2.6/Bio/PopGen/Async/Local.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-sparc-2.6/Bio/PopGen/Async/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-sparc-2.6/Bio/PopGen/FDist/Async.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-sparc-2.6/Bio/PopGen/FDist/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-sparc-2.6/Bio/PopGen/FDist/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-sparc-2.6/Bio/PopGen/FDist/Utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-sparc-2.6/Bio/PopGen/GenePop/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-sparc-2.6/Bio/PopGen/GenePop/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-sparc-2.6/Bio/PopGen/GenePop/Utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-sparc-2.6/Bio/PopGen/GenePop/EasyController.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/Async.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/Template.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/Cache.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/island.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/ssm_1d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/simple.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/ssm_2d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/decline_lambda.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/split_island.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/bottle.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-sparc-2.6/Bio/PopGen/SimCoal/data/decline_split.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-sparc-2.6/Bio/Prosite/Prodoc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-sparc-2.6/Bio/Prosite/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-sparc-2.6/Bio/Prosite/Pattern.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-sparc-2.6/Bio/Restriction/Restriction_Dictionary.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-sparc-2.6/Bio/Restriction/Restriction.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-sparc-2.6/Bio/Restriction/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-sparc-2.6/Bio/Restriction/RanaConfig.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-sparc-2.6/Bio/Restriction/PrintFormat.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-sparc-2.6/Bio/Restriction/_Update/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-sparc-2.6/Bio/Restriction/_Update/RestrictionCompiler.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-sparc-2.6/Bio/Restriction/_Update/Update.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-sparc-2.6/Bio/Restriction/DNAUtils.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Des.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Dom.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/FileIndex.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Cla.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Hie.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Raf.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-sparc-2.6/Bio/SCOP/Residues.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/IgIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/SwissIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/QualityIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/PirIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/FastaIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/_index.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/InsdcIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/Interfaces.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/_convert.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/AceIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/TabIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-sparc-2.6/Bio/SeqIO/PhdIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/CheckSum.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/ProtParamData.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/MeltingTemp.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/IsoelectricPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/CodonUsage.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/lcc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/ProtParam.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-sparc-2.6/Bio/SeqUtils/CodonUsageIndices.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-sparc-2.6/Bio/Sequencing/Phd.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-sparc-2.6/Bio/Sequencing/Ace.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-sparc-2.6/Bio/Sequencing/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-sparc-2.6/Bio/Sequencing/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-sparc-2.6/Bio/Sequencing/Applications/_Novoalign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-sparc-2.6/Bio/Statistics/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-sparc-2.6/Bio/Statistics/lowess.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-sparc-2.6/Bio/SubsMat/FreqTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-sparc-2.6/Bio/SubsMat/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-sparc-2.6/Bio/SubsMat/MatrixInfo.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-sparc-2.6/Bio/SVDSuperimposer/SVDSuperimposer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-sparc-2.6/Bio/SVDSuperimposer/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-sparc-2.6/Bio/SwissProt/SProt.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-sparc-2.6/Bio/SwissProt/KeyWList.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-sparc-2.6/Bio/SwissProt/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-sparc-2.6/Bio/UniGene/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-sparc-2.6/Bio/Wise/dnal.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-sparc-2.6/Bio/Wise/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-sparc-2.6/Bio/Wise/psw.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW copying build/lib.linux-sparc-2.6/Bio/WWW/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-sparc-2.6/Bio/Affy/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-sparc-2.6/Bio/Affy/CelFile.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-sparc-2.6/Bio/Cluster/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-sparc-2.6/Bio/Cluster/cluster.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-sparc-2.6/Bio/KDTree/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-sparc-2.6/Bio/KDTree/KDTree.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-sparc-2.6/Bio/KDTree/_CKDTree.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-sparc-2.6/Bio/clistfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/cmathfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/cstringfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/cpairwise2.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/trie.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-sparc-2.6/Bio/cMarkovModel.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-sparc-2.6/BioSQL/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-sparc-2.6/BioSQL/DBUtils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-sparc-2.6/BioSQL/Loader.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-sparc-2.6/BioSQL/BioSeq.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-sparc-2.6/BioSQL/BioSeqDatabase.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Transcribe.py to Transcribe.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Search.py to Search.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/EZRetrieve.py to EZRetrieve.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/DocSQL.py to DocSQL.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/mathfns.py to mathfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Translate.py to Translate.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HotRand.py to HotRand.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/File.py to File.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/distance.py to distance.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FilteredReader.py to FilteredReader.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/stringfns.py to stringfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ParserSupport.py to ParserSupport.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NetCatch.py to NetCatch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PubMed.py to PubMed.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/listfns.py to listfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/triefind.py to triefind.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PropertyManager.py to PropertyManager.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/FormatConvert.py to FormatConvert.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Generic.py to Generic.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/CompareAceStandalone.py to CompareAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/AlignAceStandalone.py to AlignAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIStandalone.py to NCBIStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/IUPACEncoding.py to IUPACEncoding.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/FastaAlign.py to FastaAlign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Evolver.py to Evolver.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Organism.py to Organism.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/GeneralPoint.py to GeneralPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Point.py to Point.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/TwoPoint.py to TwoPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Uniform.py to Uniform.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/Simple.py to Simple.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/Stabilizing.py to Stabilizing.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Diversity.py to Diversity.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/RouletteWheel.py to RouletteWheel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Abstract.py to Abstract.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Tournament.py to Tournament.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/LocationParser.py to LocationParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/easy.py to easy.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/GenericTools.py to GenericTools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/binning.py to binning.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Distribution.py to Distribution.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Comparative.py to Comparative.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/_Motif.py to _Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Thresholds.py to Thresholds.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/AlignAce.py to AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/MEME.py to MEME.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/_AlignAce.py to _AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Training.py to Training.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/StopTraining.py to StopTraining.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Layer.py to Layer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Network.py to Network.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Schema.py to Schema.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Signature.py to Signature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nexus.py to Nexus.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Trees.py to Trees.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nodes.py to Nodes.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/NOEtools.py to NOEtools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/xpktools.py to xpktools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/spark.py to spark.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/HashSet.py to HashSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Model.py to Model.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Atom.py to Atom.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/Local.py to Local.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Template.py to Template.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Cache.py to Cache.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/RestrictionCompiler.py to RestrictionCompiler.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/Update.py to Update.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/FileIndex.py to FileIndex.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/SVDSuperimposer.py to SVDSuperimposer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/SProt.py to SProt.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc running install_egg_info Writing /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/biopython-1.52.egg-info dh_movefiles -ppython-biopython \ -ppython-biopython-sql \ --sourcedir=debian/python2.6-tmp dh_testdir dh_testroot dh_installdocs -a dh_installchangelogs -a dh_fixperms -a dh_compress -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform sparc: python-biopython dh_strip debug symbol extraction: packages to act on: python-biopython dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: unknown substitution variable ${python:Versions} WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `python-biopython-dbgsym' in `../python-biopython-dbgsym_1.52-1_sparc.ddeb'. dh_pysupport -a dh_shlibdeps -a dpkg-shlibdeps: warning: dependency on libpthread.so.0 could be avoided if "debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Restriction/DNAUtils.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/MMCIFlex.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cMarkovModel.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/trie.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cmathfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/clistfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/KDTree/_CKDTree.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cstringfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cpairwise2.so" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -a dh_md5sums -a dh_installdeb -a dh_builddeb -a pkgstriptranslations: processing control file: ./debian/python-biopython/DEBIAN/control, package python-biopython, directory ./debian/python-biopython pkgstriptranslations: python-biopython does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython' in `../python-biopython_1.52-1_sparc.deb'. dpkg-genchanges -B -mUbuntu/sparc Build Daemon >../python-biopython_1.52-1_sparc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20091109-0254 Publishing debug debs. chroot-autobuild/build/buildd/python-biopython_1.52-1_sparc.deb: new debian package, version 2.0. size 929498 bytes: control archive= 11984 bytes. 1356 bytes, 29 lines control 30412 bytes, 380 lines md5sums 193 bytes, 7 lines * postinst #!/bin/sh 196 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython Version: 1.52-1 Architecture: sparc Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 5292 Depends: python (<< 2.7), python (>= 2.6), python-support (>= 0.90.0), libc6 (>= 2.6), python-numpy, python-reportlab Recommends: python-biopython-doc (= 1.52-1) Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Provides: python2.6-biopython Section: python Priority: optional Homepage: http://biopython.org Description: Python library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. Python-Version: 2.6 chroot-autobuild/build/buildd/python-biopython_1.52-1_sparc.deb: drwxr-xr-x root/root 0 2009-11-09 02:54 ./ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/ -rw-r--r-- root/root 10388 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/cmathfns.so -rw-r--r-- root/root 10128 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/cstringfns.so -rw-r--r-- root/root 10280 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/clistfns.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Restriction/ -rw-r--r-- root/root 10152 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Restriction/DNAUtils.so -rw-r--r-- root/root 18184 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/cpairwise2.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Motif/ -rw-r--r-- root/root 9992 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Cluster/ -rw-r--r-- root/root 93792 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/PDB/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/ -rw-r--r-- root/root 18200 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/MMCIFlex.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/KDTree/ -rw-r--r-- root/root 27392 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/KDTree/_CKDTree.so -rw-r--r-- root/root 9804 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/cMarkovModel.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Nexus/ -rw-r--r-- root/root 9668 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/Nexus/cnexus.so -rw-r--r-- root/root 19468 2009-11-09 02:54 ./usr/lib/pyshared/python2.6/Bio/trie.so drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/doc/python-biopython/ -rw-r--r-- root/root 2568 2009-09-22 13:03 ./usr/share/doc/python-biopython/CONTRIB -rw-r--r-- root/root 12411 2009-09-22 16:21 ./usr/share/doc/python-biopython/NEWS.gz -rw-r--r-- root/root 273 2009-11-09 02:54 ./usr/share/doc/python-biopython/README.Debian -rw-r--r-- root/root 1759 2009-11-09 02:54 ./usr/share/doc/python-biopython/copyright -rw-r--r-- root/root 3302 2009-09-10 11:25 ./usr/share/doc/python-biopython/DEPRECATED.gz -rw-r--r-- root/root 2240 2009-11-09 02:54 ./usr/share/doc/python-biopython/changelog.Debian.gz drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GA/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GA/Crossover/ -rw-r--r-- root/root 1065 2005-10-19 22:19 ./usr/share/pyshared/Bio/GA/Crossover/TwoPoint.py -rw-r--r-- root/root 2135 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Crossover/General.py -rw-r--r-- root/root 42 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Crossover/__init__.py -rw-r--r-- root/root 5485 2005-10-19 22:19 ./usr/share/pyshared/Bio/GA/Crossover/GeneralPoint.py -rw-r--r-- root/root 1675 2005-10-19 22:19 ./usr/share/pyshared/Bio/GA/Crossover/Uniform.py -rw-r--r-- root/root 798 2005-10-19 22:19 ./usr/share/pyshared/Bio/GA/Crossover/Point.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GA/Mutation/ -rw-r--r-- root/root 1406 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Mutation/General.py -rw-r--r-- root/root 3150 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Mutation/Simple.py -rw-r--r-- root/root 42 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Mutation/__init__.py -rw-r--r-- root/root 4884 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Organism.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GA/Selection/ -rw-r--r-- root/root 42 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Selection/__init__.py -rw-r--r-- root/root 4700 2005-10-19 22:19 ./usr/share/pyshared/Bio/GA/Selection/RouletteWheel.py -rw-r--r-- root/root 2999 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Selection/Tournament.py -rw-r--r-- root/root 3453 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Selection/Diversity.py -rw-r--r-- root/root 2076 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Selection/Abstract.py -rw-r--r-- root/root 87 2008-09-06 21:01 ./usr/share/pyshared/Bio/GA/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GA/Repair/ -rw-r--r-- root/root 2327 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Repair/Stabilizing.py -rw-r--r-- root/root 42 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Repair/__init__.py -rw-r--r-- root/root 2379 2001-12-14 15:01 ./usr/share/pyshared/Bio/GA/Evolver.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Entrez/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Entrez/DTDs/ -rw-r--r-- root/root 3317 2008-12-13 18:18 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -rw-r--r-- root/root 9857 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -rw-r--r-- root/root 1660 2008-05-24 09:14 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -rw-r--r-- root/root 656 2008-05-24 09:14 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_TSeq.dtd -rw-r--r-- root/root 522 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/ePost_020511.dtd -rw-r--r-- root/root 3017 2008-05-17 03:42 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmmedline_080101.dtd -rw-r--r-- root/root 3093 2008-07-03 06:04 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -rw-r--r-- root/root 8395 2008-05-15 01:25 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -rw-r--r-- root/root 2076 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/PIR_General.mod.dtd -rw-r--r-- root/root 647 2008-05-15 01:25 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Mim.dtd -rw-r--r-- root/root 5262 2008-12-13 18:18 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -rw-r--r-- root/root 6460 2008-12-13 18:37 ./usr/share/pyshared/Bio/Entrez/DTDs/HomoloGene.mod.dtd -rw-r--r-- root/root 11452 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -rw-r--r-- root/root 736 2008-05-13 16:02 ./usr/share/pyshared/Bio/Entrez/DTDs/eSpell.dtd -rw-r--r-- root/root 5757 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -rw-r--r-- root/root 5001 2008-05-17 03:42 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -rw-r--r-- root/root 4632 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -rw-r--r-- root/root 1535 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/PRF_General.mod.dtd -rw-r--r-- root/root 9195 2008-05-24 09:14 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -rw-r--r-- root/root 3195 2008-12-13 18:18 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmmedline_090101.dtd -rw-r--r-- root/root 3397 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -rw-r--r-- root/root 5155 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -rw-r--r-- root/root 1377 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/eInfo_020511.dtd -rw-r--r-- root/root 1044 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -rw-r--r-- root/root 3372 2008-12-13 18:37 ./usr/share/pyshared/Bio/Entrez/DTDs/HomoloGene.dtd -rw-r--r-- root/root 14769 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -rw-r--r-- root/root 3149 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -rw-r--r-- root/root 15900 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -rw-r--r-- root/root 855 2008-05-16 12:33 ./usr/share/pyshared/Bio/Entrez/DTDs/egquery.dtd -rw-r--r-- root/root 1794 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -rw-r--r-- root/root 1791 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -rw-r--r-- root/root 3059 2008-12-13 18:18 ./usr/share/pyshared/Bio/Entrez/DTDs/pubmed_090101.dtd -rw-r--r-- root/root 24687 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -rw-r--r-- root/root 659 2008-05-24 09:14 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -rw-r--r-- root/root 2375 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/SP_General.mod.dtd -rw-r--r-- root/root 3373 2008-07-03 06:00 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqset.dtd -rw-r--r-- root/root 1815 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/PDB_General.mod.dtd -rw-r--r-- root/root 2303 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -rw-r--r-- root/root 2700 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -rw-r--r-- root/root 3185 2008-05-17 03:42 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -rw-r--r-- root/root 7947 2008-05-17 03:42 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmcommon_080101.dtd -rw-r--r-- root/root 3936 2008-05-17 07:10 ./usr/share/pyshared/Bio/Entrez/DTDs/taxon.dtd -rw-r--r-- root/root 1947 2008-05-23 17:45 ./usr/share/pyshared/Bio/Entrez/DTDs/eLink_020511.dtd -rw-r--r-- root/root 7180 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -rw-r--r-- root/root 2397 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/eSearch_020511.dtd -rw-r--r-- root/root 9909 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -rw-r--r-- root/root 2871 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/EMBL_General.mod.dtd -rw-r--r-- root/root 604 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/eSummary_041029.dtd -rw-r--r-- root/root 3909 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -rw-r--r-- root/root 8213 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_General.mod.dtd -rw-r--r-- root/root 8638 2008-12-13 18:18 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmcommon_090101.dtd -rw-r--r-- root/root 3026 2008-05-17 03:42 ./usr/share/pyshared/Bio/Entrez/DTDs/pubmed_080101.dtd -rw-r--r-- root/root 1743 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/GenBank_General.mod.dtd -rw-r--r-- root/root 410 2008-05-13 12:17 ./usr/share/pyshared/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -rw-r--r-- root/root 5672 2009-03-20 04:43 ./usr/share/pyshared/Bio/Entrez/DTDs/nlmserials_080101.dtd -rw-r--r-- root/root 13446 2009-09-10 05:05 ./usr/share/pyshared/Bio/Entrez/__init__.py -rw-r--r-- root/root 13797 2009-09-05 06:52 ./usr/share/pyshared/Bio/Entrez/Parser.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Motif/ -rw-r--r-- root/root 4607 2009-08-28 14:54 ./usr/share/pyshared/Bio/Motif/__init__.py -rw-r--r-- root/root 25935 2009-08-28 14:54 ./usr/share/pyshared/Bio/Motif/_Motif.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Motif/Applications/ -rw-r--r-- root/root 397 2009-08-21 10:12 ./usr/share/pyshared/Bio/Motif/Applications/__init__.py -rw-r--r-- root/root 3160 2009-05-04 17:26 ./usr/share/pyshared/Bio/Motif/Applications/_AlignAce.py -rw-r--r-- root/root 3439 2009-04-16 16:07 ./usr/share/pyshared/Bio/Motif/Thresholds.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Motif/Parsers/ -rw-r--r-- root/root 5923 2009-04-16 16:07 ./usr/share/pyshared/Bio/Motif/Parsers/AlignAce.py -rw-r--r-- root/root 26619 2009-04-15 22:46 ./usr/share/pyshared/Bio/Motif/Parsers/MEME.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Parsers/ -rw-r--r-- root/root 69 2004-05-13 17:58 ./usr/share/pyshared/Bio/Parsers/__init__.py -rw-r--r-- root/root 18158 2008-11-28 04:22 ./usr/share/pyshared/Bio/Parsers/spark.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/SimCoal/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/ -rw-r--r-- root/root 475 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/simple.par -rw-r--r-- root/root 568 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/bottle.par -rw-r--r-- root/root 618 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/island.par -rw-r--r-- root/root 510 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/decline_lambda.par -rw-r--r-- root/root 643 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/decline_split.par -rw-r--r-- root/root 748 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/split_island.par -rw-r--r-- root/root 598 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/ssm_2d.par -rw-r--r-- root/root 752 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/split_ssm_1d.par -rw-r--r-- root/root 715 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/split_ssm_2d.par -rw-r--r-- root/root 621 2007-11-13 14:41 ./usr/share/pyshared/Bio/PopGen/SimCoal/data/ssm_1d.par -rw-r--r-- root/root 2085 2008-11-14 13:00 ./usr/share/pyshared/Bio/PopGen/SimCoal/Controller.py -rw-r--r-- root/root 7480 2008-11-14 13:15 ./usr/share/pyshared/Bio/PopGen/SimCoal/Template.py -rw-r--r-- root/root 593 2008-01-15 22:40 ./usr/share/pyshared/Bio/PopGen/SimCoal/__init__.py -rw-r--r-- root/root 1038 2009-04-16 14:39 ./usr/share/pyshared/Bio/PopGen/SimCoal/Async.py -rw-r--r-- root/root 2878 2009-04-16 14:38 ./usr/share/pyshared/Bio/PopGen/SimCoal/Cache.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/FDist/ -rw-r--r-- root/root 4332 2008-10-23 12:49 ./usr/share/pyshared/Bio/PopGen/FDist/__init__.py -rw-r--r-- root/root 8644 2008-10-10 13:27 ./usr/share/pyshared/Bio/PopGen/FDist/Controller.py -rw-r--r-- root/root 2536 2008-10-10 13:27 ./usr/share/pyshared/Bio/PopGen/FDist/Utils.py -rw-r--r-- root/root 6160 2007-08-11 16:04 ./usr/share/pyshared/Bio/PopGen/FDist/Async.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/Async/ -rw-r--r-- root/root 3155 2008-10-30 18:45 ./usr/share/pyshared/Bio/PopGen/Async/__init__.py -rw-r--r-- root/root 2004 2007-08-11 16:04 ./usr/share/pyshared/Bio/PopGen/Async/Local.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PopGen/GenePop/ -rw-r--r-- root/root 9673 2009-09-17 05:20 ./usr/share/pyshared/Bio/PopGen/GenePop/__init__.py -rw-r--r-- root/root 520 2007-08-13 21:53 ./usr/share/pyshared/Bio/PopGen/GenePop/Utils.py -rw-r--r-- root/root 6488 2009-09-17 04:09 ./usr/share/pyshared/Bio/PopGen/GenePop/EasyController.py -rw-r--r-- root/root 33201 2009-09-17 04:09 ./usr/share/pyshared/Bio/PopGen/GenePop/Controller.py -rw-r--r-- root/root 293 2007-07-18 14:25 ./usr/share/pyshared/Bio/PopGen/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/FSSP/ -rw-r--r-- root/root 8814 2008-11-27 11:08 ./usr/share/pyshared/Bio/FSSP/__init__.py -rw-r--r-- root/root 3837 2003-06-21 03:49 ./usr/share/pyshared/Bio/FSSP/FSSPTools.py -rw-r--r-- root/root 839 2001-06-07 18:47 ./usr/share/pyshared/Bio/FSSP/fssp_rec.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Blast/ -rw-r--r-- root/root 13390 2009-05-19 14:56 ./usr/share/pyshared/Bio/Blast/Applications.py -rw-r--r-- root/root 85170 2009-07-07 17:45 ./usr/share/pyshared/Bio/Blast/NCBIStandalone.py -rw-r--r-- root/root 3371 2008-11-28 04:50 ./usr/share/pyshared/Bio/Blast/ParseBlastTable.py -rw-r--r-- root/root 8518 2009-09-10 05:01 ./usr/share/pyshared/Bio/Blast/NCBIWWW.py -rw-r--r-- root/root 24175 2009-08-05 12:25 ./usr/share/pyshared/Bio/Blast/NCBIXML.py -rw-r--r-- root/root 14222 2009-08-11 10:12 ./usr/share/pyshared/Bio/Blast/Record.py -rw-r--r-- root/root 281 2004-05-13 17:58 ./usr/share/pyshared/Bio/Blast/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/AlignIO/ -rw-r--r-- root/root 16763 2009-05-08 22:20 ./usr/share/pyshared/Bio/AlignIO/PhylipIO.py -rw-r--r-- root/root 5678 2009-07-27 16:43 ./usr/share/pyshared/Bio/AlignIO/Interfaces.py -rw-r--r-- root/root 19420 2009-09-02 13:49 ./usr/share/pyshared/Bio/AlignIO/__init__.py -rw-r--r-- root/root 21436 2009-05-12 19:15 ./usr/share/pyshared/Bio/AlignIO/ClustalIO.py -rw-r--r-- root/root 23487 2009-07-10 12:03 ./usr/share/pyshared/Bio/AlignIO/EmbossIO.py -rw-r--r-- root/root 7420 2009-09-02 13:49 ./usr/share/pyshared/Bio/AlignIO/NexusIO.py -rw-r--r-- root/root 23974 2009-07-08 11:13 ./usr/share/pyshared/Bio/AlignIO/StockholmIO.py -rw-r--r-- root/root 28679 2009-01-27 18:34 ./usr/share/pyshared/Bio/AlignIO/FastaIO.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Sequencing/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Sequencing/Applications/ -rw-r--r-- root/root 7456 2009-09-17 12:14 ./usr/share/pyshared/Bio/Sequencing/Applications/_Novoalign.py -rw-r--r-- root/root 129 2009-09-16 22:56 ./usr/share/pyshared/Bio/Sequencing/Applications/__init__.py -rw-r--r-- root/root 4716 2009-09-10 05:21 ./usr/share/pyshared/Bio/Sequencing/Phd.py -rw-r--r-- root/root 241 2004-01-26 00:15 ./usr/share/pyshared/Bio/Sequencing/__init__.py -rw-r--r-- root/root 17793 2009-09-10 05:21 ./usr/share/pyshared/Bio/Sequencing/Ace.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Emboss/ -rw-r--r-- root/root 65 2001-12-14 13:04 ./usr/share/pyshared/Bio/Emboss/__init__.py -rw-r--r-- root/root 3094 2008-08-17 10:05 ./usr/share/pyshared/Bio/Emboss/Primer3.py -rw-r--r-- root/root 46654 2009-09-20 11:56 ./usr/share/pyshared/Bio/Emboss/Applications.py -rw-r--r-- root/root 2142 2008-08-17 10:05 ./usr/share/pyshared/Bio/Emboss/PrimerSearch.py -rw-r--r-- root/root 67430 2009-09-07 12:46 ./usr/share/pyshared/Bio/Seq.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/NeuralNetwork/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/NeuralNetwork/BackPropagation/ -rw-r--r-- root/root 47 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/BackPropagation/__init__.py -rw-r--r-- root/root 10996 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/BackPropagation/Layer.py -rw-r--r-- root/root 4128 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/BackPropagation/Network.py -rw-r--r-- root/root 2857 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/StopTraining.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/ -rw-r--r-- root/root 8944 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/Signature.py -rw-r--r-- root/root 8212 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/Motif.py -rw-r--r-- root/root 47 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/__init__.py -rw-r--r-- root/root 8933 2008-11-28 02:55 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/Pattern.py -rw-r--r-- root/root 26112 2008-11-28 03:02 ./usr/share/pyshared/Bio/NeuralNetwork/Gene/Schema.py -rw-r--r-- root/root 47 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/__init__.py -rw-r--r-- root/root 3027 2001-12-14 15:01 ./usr/share/pyshared/Bio/NeuralNetwork/Training.py -rw-r--r-- root/root 33626 2008-10-31 15:50 ./usr/share/pyshared/Bio/pairwise2.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Restriction/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Restriction/_Update/ -rw-r--r-- root/root 35267 2008-10-23 12:51 ./usr/share/pyshared/Bio/Restriction/_Update/RestrictionCompiler.py -rw-r--r-- root/root 3494 2008-10-23 12:51 ./usr/share/pyshared/Bio/Restriction/_Update/Update.py -rw-r--r-- root/root 3236 2007-07-13 16:15 ./usr/share/pyshared/Bio/Restriction/RanaConfig.py -rw-r--r-- root/root 408996 2007-07-13 16:13 ./usr/share/pyshared/Bio/Restriction/Restriction_Dictionary.py -rw-r--r-- root/root 8752 2007-07-13 16:13 ./usr/share/pyshared/Bio/Restriction/__init__.py -rw-r--r-- root/root 81553 2009-06-23 12:08 ./usr/share/pyshared/Bio/Restriction/Restriction.py -rw-r--r-- root/root 13556 2008-10-30 18:32 ./usr/share/pyshared/Bio/Restriction/PrintFormat.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Encodings/ -rw-r--r-- root/root 5116 2002-08-11 05:02 ./usr/share/pyshared/Bio/Encodings/IUPACEncoding.py -rw-r--r-- root/root 102 2004-05-13 17:58 ./usr/share/pyshared/Bio/Encodings/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Data/ -rw-r--r-- root/root 4522 2008-07-26 23:04 ./usr/share/pyshared/Bio/Data/IUPACData.py -rw-r--r-- root/root 36309 2009-07-27 16:06 ./usr/share/pyshared/Bio/Data/CodonTable.py -rw-r--r-- root/root 88 2004-05-13 17:58 ./usr/share/pyshared/Bio/Data/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SeqIO/ -rw-r--r-- root/root 4710 2009-06-08 14:54 ./usr/share/pyshared/Bio/SeqIO/SwissIO.py -rw-r--r-- root/root 36343 2009-09-17 12:26 ./usr/share/pyshared/Bio/SeqIO/__init__.py -rw-r--r-- root/root 13376 2009-08-25 11:15 ./usr/share/pyshared/Bio/SeqIO/_convert.py -rw-r--r-- root/root 6592 2009-09-02 13:25 ./usr/share/pyshared/Bio/SeqIO/PhdIO.py -rw-r--r-- root/root 7010 2008-10-10 13:25 ./usr/share/pyshared/Bio/SeqIO/PirIO.py -rw-r--r-- root/root 4941 2009-06-04 15:46 ./usr/share/pyshared/Bio/SeqIO/AceIO.py -rw-r--r-- root/root 74730 2009-08-25 11:13 ./usr/share/pyshared/Bio/SeqIO/QualityIO.py -rw-r--r-- root/root 7635 2009-07-02 09:00 ./usr/share/pyshared/Bio/SeqIO/FastaIO.py -rw-r--r-- root/root 3673 2009-04-10 18:27 ./usr/share/pyshared/Bio/SeqIO/IgIO.py -rw-r--r-- root/root 19658 2009-09-17 12:26 ./usr/share/pyshared/Bio/SeqIO/_index.py -rw-r--r-- root/root 10908 2009-09-02 10:58 ./usr/share/pyshared/Bio/SeqIO/Interfaces.py -rw-r--r-- root/root 26165 2009-09-16 17:42 ./usr/share/pyshared/Bio/SeqIO/InsdcIO.py -rw-r--r-- root/root 3901 2009-02-19 17:15 ./usr/share/pyshared/Bio/SeqIO/TabIO.py -rw-r--r-- root/root 5877 2008-11-28 10:30 ./usr/share/pyshared/Bio/utils.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Enzyme/ -rw-r--r-- root/root 8337 2009-03-25 05:13 ./usr/share/pyshared/Bio/Enzyme/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/HMM/ -rw-r--r-- root/root 2063 2008-11-28 01:33 ./usr/share/pyshared/Bio/HMM/Utilities.py -rw-r--r-- root/root 19404 2006-09-15 16:55 ./usr/share/pyshared/Bio/HMM/MarkovModel.py -rw-r--r-- root/root 89 2008-09-06 21:03 ./usr/share/pyshared/Bio/HMM/__init__.py -rw-r--r-- root/root 16944 2001-12-14 13:34 ./usr/share/pyshared/Bio/HMM/Trainer.py -rw-r--r-- root/root 12658 2001-12-14 13:34 ./usr/share/pyshared/Bio/HMM/DynamicProgramming.py -rw-r--r-- root/root 7173 2009-09-10 11:25 ./usr/share/pyshared/Bio/NetCatch.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/InterPro/ -rw-r--r-- root/root 8808 2008-10-30 18:32 ./usr/share/pyshared/Bio/InterPro/__init__.py -rw-r--r-- root/root 22206 2008-11-01 07:49 ./usr/share/pyshared/Bio/MarkovModel.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SubsMat/ -rw-r--r-- root/root 24816 2009-09-03 10:35 ./usr/share/pyshared/Bio/SubsMat/__init__.py -rw-r--r-- root/root 175320 2004-03-21 16:56 ./usr/share/pyshared/Bio/SubsMat/MatrixInfo.py -rw-r--r-- root/root 2711 2008-11-28 10:30 ./usr/share/pyshared/Bio/SubsMat/FreqTable.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SCOP/ -rw-r--r-- root/root 2928 2008-10-23 18:44 ./usr/share/pyshared/Bio/SCOP/Residues.py -rw-r--r-- root/root 3668 2009-08-20 03:34 ./usr/share/pyshared/Bio/SCOP/Cla.py -rw-r--r-- root/root 32328 2009-08-20 03:34 ./usr/share/pyshared/Bio/SCOP/__init__.py -rw-r--r-- root/root 2360 2009-08-20 03:49 ./usr/share/pyshared/Bio/SCOP/FileIndex.py -rw-r--r-- root/root 3720 2009-08-20 03:48 ./usr/share/pyshared/Bio/SCOP/Dom.py -rw-r--r-- root/root 2865 2009-08-20 03:34 ./usr/share/pyshared/Bio/SCOP/Des.py -rw-r--r-- root/root 2743 2009-08-20 03:34 ./usr/share/pyshared/Bio/SCOP/Hie.py -rw-r--r-- root/root 12046 2009-08-20 03:34 ./usr/share/pyshared/Bio/SCOP/Raf.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/KDTree/ -rw-r--r-- root/root 8119 2008-11-11 11:50 ./usr/share/pyshared/Bio/KDTree/KDTree.py -rw-r--r-- root/root 432 2004-03-21 16:56 ./usr/share/pyshared/Bio/KDTree/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/MEME/ -rw-r--r-- root/root 737 2009-08-21 10:12 ./usr/share/pyshared/Bio/MEME/__init__.py -rw-r--r-- root/root 24667 2008-11-28 02:27 ./usr/share/pyshared/Bio/MEME/Parser.py -rw-r--r-- root/root 8882 2008-10-23 18:13 ./usr/share/pyshared/Bio/MEME/Motif.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Graphics/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/ -rw-r--r-- root/root 887 2009-04-15 11:32 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/__init__.py -rw-r--r-- root/root 10817 2009-04-16 12:53 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_FeatureSet.py -rw-r--r-- root/root 15948 2009-05-20 16:28 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Track.py -rw-r--r-- root/root 9113 2009-04-16 12:53 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Graph.py -rw-r--r-- root/root 7908 2009-04-16 12:53 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_GraphSet.py -rw-r--r-- root/root 9690 2009-04-21 13:30 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Feature.py -rw-r--r-- root/root 50913 2009-05-20 16:14 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -rw-r--r-- root/root 19307 2009-04-15 11:32 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Diagram.py -rw-r--r-- root/root 8431 2009-04-15 11:32 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_Colors.py -rw-r--r-- root/root 50239 2009-05-20 16:14 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -rw-r--r-- root/root 18880 2009-04-19 13:02 ./usr/share/pyshared/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -rw-r--r-- root/root 3321 2009-03-20 15:46 ./usr/share/pyshared/Bio/Graphics/__init__.py -rw-r--r-- root/root 16483 2009-03-20 15:46 ./usr/share/pyshared/Bio/Graphics/BasicChromosome.py -rw-r--r-- root/root 6710 2008-10-30 18:45 ./usr/share/pyshared/Bio/Graphics/DisplayRepresentation.py -rw-r--r-- root/root 9071 2009-03-20 15:46 ./usr/share/pyshared/Bio/Graphics/Distribution.py -rw-r--r-- root/root 6037 2009-03-20 15:46 ./usr/share/pyshared/Bio/Graphics/Comparative.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/PDB/ -rw-r--r-- root/root 5745 2008-11-28 04:57 ./usr/share/pyshared/Bio/PDB/MMCIFParser.py -rw-r--r-- root/root 4942 2009-03-28 22:35 ./usr/share/pyshared/Bio/PDB/Residue.py -rw-r--r-- root/root 4538 2008-11-17 11:19 ./usr/share/pyshared/Bio/PDB/NeighborSearch.py -rw-r--r-- root/root 3838 2009-08-06 15:15 ./usr/share/pyshared/Bio/PDB/StructureAlignment.py -rw-r--r-- root/root 11181 2009-04-23 16:34 ./usr/share/pyshared/Bio/PDB/HSExposure.py -rw-r--r-- root/root 11763 2009-04-23 17:14 ./usr/share/pyshared/Bio/PDB/PDBParser.py -rw-r--r-- root/root 2045 2009-04-23 16:22 ./usr/share/pyshared/Bio/PDB/PSEA.py -rw-r--r-- root/root 6647 2009-03-28 22:35 ./usr/share/pyshared/Bio/PDB/Entity.py -rw-r--r-- root/root 3724 2009-03-28 22:35 ./usr/share/pyshared/Bio/PDB/Chain.py -rw-r--r-- root/root 5905 2008-10-06 18:16 ./usr/share/pyshared/Bio/PDB/DSSP.py -rw-r--r-- root/root 1395 2006-10-12 09:47 ./usr/share/pyshared/Bio/PDB/Structure.py -rw-r--r-- root/root 4419 2008-11-01 06:56 ./usr/share/pyshared/Bio/PDB/ResidueDepth.py -rw-r--r-- root/root 13430 2009-07-21 22:05 ./usr/share/pyshared/Bio/PDB/PDBList.py -rw-r--r-- root/root 10372 2009-04-23 17:14 ./usr/share/pyshared/Bio/PDB/StructureBuilder.py -rw-r--r-- root/root 6798 2006-10-12 09:47 ./usr/share/pyshared/Bio/PDB/NACCESS.py -rw-r--r-- root/root 1983 2009-07-07 17:49 ./usr/share/pyshared/Bio/PDB/Dice.py -rw-r--r-- root/root 517 2009-04-23 17:14 ./usr/share/pyshared/Bio/PDB/PDBExceptions.py -rw-r--r-- root/root 9064 2008-11-01 07:29 ./usr/share/pyshared/Bio/PDB/Vector.py -rw-r--r-- root/root 2132 2006-10-12 09:47 ./usr/share/pyshared/Bio/PDB/__init__.py -rw-r--r-- root/root 2332 2008-11-01 07:26 ./usr/share/pyshared/Bio/PDB/Superimposer.py -rw-r--r-- root/root 1675 2008-11-01 06:56 ./usr/share/pyshared/Bio/PDB/Model.py -rw-r--r-- root/root 5665 2009-03-04 16:11 ./usr/share/pyshared/Bio/PDB/PDBIO.py -rw-r--r-- root/root 2413 2008-10-03 11:11 ./usr/share/pyshared/Bio/PDB/Selection.py -rw-r--r-- root/root 8893 2008-11-28 08:47 ./usr/share/pyshared/Bio/PDB/parse_pdb_header.py -rw-r--r-- root/root 3335 2006-10-12 09:47 ./usr/share/pyshared/Bio/PDB/AbstractPropertyMap.py -rw-r--r-- root/root 8197 2008-11-01 06:56 ./usr/share/pyshared/Bio/PDB/Atom.py -rw-r--r-- root/root 5078 2009-07-07 17:49 ./usr/share/pyshared/Bio/PDB/MMCIF2Dict.py -rw-r--r-- root/root 8715 2008-11-01 06:56 ./usr/share/pyshared/Bio/PDB/FragmentMapper.py -rw-r--r-- root/root 11524 2009-03-28 22:35 ./usr/share/pyshared/Bio/PDB/Polypeptide.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Pathway/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Pathway/Rep/ -rw-r--r-- root/root 344 2004-05-13 17:58 ./usr/share/pyshared/Bio/Pathway/Rep/__init__.py -rw-r--r-- root/root 3159 2008-10-30 19:02 ./usr/share/pyshared/Bio/Pathway/Rep/HashSet.py -rw-r--r-- root/root 6997 2008-10-30 19:02 ./usr/share/pyshared/Bio/Pathway/Rep/MultiGraph.py -rw-r--r-- root/root 6114 2008-10-30 19:02 ./usr/share/pyshared/Bio/Pathway/Rep/Graph.py -rw-r--r-- root/root 10801 2008-10-23 18:28 ./usr/share/pyshared/Bio/Pathway/__init__.py -rw-r--r-- root/root 1802 2009-06-18 11:09 ./usr/share/pyshared/Bio/Transcribe.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Ndb/ -rw-r--r-- root/root 9832 2008-11-29 06:01 ./usr/share/pyshared/Bio/Ndb/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Nexus/ -rw-r--r-- root/root 249 2008-06-17 12:18 ./usr/share/pyshared/Bio/Nexus/__init__.py -rw-r--r-- root/root 74504 2009-05-08 22:20 ./usr/share/pyshared/Bio/Nexus/Nexus.py -rw-r--r-- root/root 5759 2008-10-23 15:26 ./usr/share/pyshared/Bio/Nexus/Nodes.py -rw-r--r-- root/root 37121 2009-07-27 13:25 ./usr/share/pyshared/Bio/Nexus/Trees.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/ExPASy/ -rw-r--r-- root/root 10910 2009-03-21 05:25 ./usr/share/pyshared/Bio/ExPASy/Prosite.py -rw-r--r-- root/root 4440 2009-03-25 01:56 ./usr/share/pyshared/Bio/ExPASy/Enzyme.py -rw-r--r-- root/root 5232 2009-03-15 08:22 ./usr/share/pyshared/Bio/ExPASy/Prodoc.py -rw-r--r-- root/root 5017 2009-03-15 10:15 ./usr/share/pyshared/Bio/ExPASy/__init__.py -rw-r--r-- root/root 3920 2009-03-15 10:10 ./usr/share/pyshared/Bio/ExPASy/ScanProsite.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SeqUtils/ -rw-r--r-- root/root 4297 2006-06-26 19:39 ./usr/share/pyshared/Bio/SeqUtils/IsoelectricPoint.py -rw-r--r-- root/root 3874 2008-09-17 12:20 ./usr/share/pyshared/Bio/SeqUtils/CheckSum.py -rw-r--r-- root/root 9948 2006-02-02 21:20 ./usr/share/pyshared/Bio/SeqUtils/ProtParam.py -rw-r--r-- root/root 18888 2009-06-18 15:52 ./usr/share/pyshared/Bio/SeqUtils/__init__.py -rw-r--r-- root/root 6467 2008-11-11 23:54 ./usr/share/pyshared/Bio/SeqUtils/CodonUsage.py -rw-r--r-- root/root 6402 2008-09-17 12:17 ./usr/share/pyshared/Bio/SeqUtils/MeltingTemp.py -rw-r--r-- root/root 5877 2007-10-25 19:18 ./usr/share/pyshared/Bio/SeqUtils/lcc.py -rw-r--r-- root/root 910 2003-10-25 01:14 ./usr/share/pyshared/Bio/SeqUtils/CodonUsageIndices.py -rw-r--r-- root/root 6328 2003-10-25 01:14 ./usr/share/pyshared/Bio/SeqUtils/ProtParamData.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Alphabet/ -rw-r--r-- root/root 4428 2008-12-07 17:22 ./usr/share/pyshared/Bio/Alphabet/IUPAC.py -rw-r--r-- root/root 8346 2008-10-10 13:30 ./usr/share/pyshared/Bio/Alphabet/__init__.py -rw-r--r-- root/root 4477 2008-09-08 11:56 ./usr/share/pyshared/Bio/Alphabet/Reduced.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GenBank/ -rw-r--r-- root/root 1744 2008-08-17 17:13 ./usr/share/pyshared/Bio/GenBank/utils.py -rw-r--r-- root/root 22643 2009-03-20 15:18 ./usr/share/pyshared/Bio/GenBank/Record.py -rw-r--r-- root/root 9251 2009-03-20 15:15 ./usr/share/pyshared/Bio/GenBank/LocationParser.py -rw-r--r-- root/root 72413 2009-07-20 21:12 ./usr/share/pyshared/Bio/GenBank/Scanner.py -rw-r--r-- root/root 57941 2009-06-03 11:43 ./usr/share/pyshared/Bio/GenBank/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Align/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Align/Applications/ -rw-r--r-- root/root 27240 2009-05-04 18:48 ./usr/share/pyshared/Bio/Align/Applications/_Muscle.py -rw-r--r-- root/root 16511 2009-05-13 22:15 ./usr/share/pyshared/Bio/Align/Applications/_Mafft.py -rw-r--r-- root/root 20849 2009-09-03 13:37 ./usr/share/pyshared/Bio/Align/Applications/_Clustalw.py -rw-r--r-- root/root 3727 2009-05-12 19:37 ./usr/share/pyshared/Bio/Align/Applications/_TCoffee.py -rw-r--r-- root/root 9531 2009-05-07 15:56 ./usr/share/pyshared/Bio/Align/Applications/_Dialign.py -rw-r--r-- root/root 3747 2009-05-12 23:13 ./usr/share/pyshared/Bio/Align/Applications/_Probcons.py -rw-r--r-- root/root 555 2009-05-12 19:37 ./usr/share/pyshared/Bio/Align/Applications/__init__.py -rw-r--r-- root/root 10109 2009-05-07 15:01 ./usr/share/pyshared/Bio/Align/Applications/_Prank.py -rw-r--r-- root/root 50 2004-05-13 17:58 ./usr/share/pyshared/Bio/Align/__init__.py -rw-r--r-- root/root 2153 2009-08-06 13:05 ./usr/share/pyshared/Bio/Align/FormatConvert.py -rw-r--r-- root/root 15943 2009-03-05 15:02 ./usr/share/pyshared/Bio/Align/Generic.py -rw-r--r-- root/root 30784 2009-05-08 22:20 ./usr/share/pyshared/Bio/Align/AlignInfo.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Prosite/ -rw-r--r-- root/root 26561 2009-08-20 03:30 ./usr/share/pyshared/Bio/Prosite/__init__.py -rw-r--r-- root/root 10669 2009-08-20 03:30 ./usr/share/pyshared/Bio/Prosite/Prodoc.py -rw-r--r-- root/root 16570 2008-11-29 06:01 ./usr/share/pyshared/Bio/Prosite/Pattern.py -rw-r--r-- root/root 4416 2009-05-08 22:20 ./usr/share/pyshared/Bio/LogisticRegression.py -rw-r--r-- root/root 5932 2008-10-23 16:59 ./usr/share/pyshared/Bio/DocSQL.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SwissProt/ -rw-r--r-- root/root 2773 2009-08-20 03:40 ./usr/share/pyshared/Bio/SwissProt/KeyWList.py -rw-r--r-- root/root 48134 2009-08-20 03:40 ./usr/share/pyshared/Bio/SwissProt/SProt.py -rw-r--r-- root/root 20050 2009-07-21 16:35 ./usr/share/pyshared/Bio/SwissProt/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Application/ -rw-r--r-- root/root 20690 2009-08-11 17:07 ./usr/share/pyshared/Bio/Application/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/WWW/ -rw-r--r-- root/root 1171 2009-08-20 03:50 ./usr/share/pyshared/Bio/WWW/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/AlignAce/ -rw-r--r-- root/root 986 2009-08-21 10:12 ./usr/share/pyshared/Bio/AlignAce/__init__.py -rw-r--r-- root/root 8654 2008-10-23 17:33 ./usr/share/pyshared/Bio/AlignAce/Motif.py -rw-r--r-- root/root 3011 2008-10-23 17:33 ./usr/share/pyshared/Bio/AlignAce/Scanner.py -rw-r--r-- root/root 2432 2009-05-12 22:11 ./usr/share/pyshared/Bio/AlignAce/Applications.py -rw-r--r-- root/root 1023 2008-11-25 14:39 ./usr/share/pyshared/Bio/AlignAce/CompareAceStandalone.py -rw-r--r-- root/root 3136 2008-11-21 16:13 ./usr/share/pyshared/Bio/AlignAce/Parser.py -rw-r--r-- root/root 2169 2009-07-02 09:33 ./usr/share/pyshared/Bio/AlignAce/AlignAceStandalone.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Affy/ -rw-r--r-- root/root 7651 2009-04-25 19:06 ./usr/share/pyshared/Bio/Affy/CelFile.py -rw-r--r-- root/root 60 2004-05-04 17:15 ./usr/share/pyshared/Bio/Affy/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Fasta/ -rw-r--r-- root/root 7009 2009-08-05 11:26 ./usr/share/pyshared/Bio/Fasta/__init__.py -rw-r--r-- root/root 2548 2009-08-05 11:26 ./usr/share/pyshared/Bio/Fasta/FastaAlign.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/CAPS/ -rw-r--r-- root/root 3152 2005-02-18 07:08 ./usr/share/pyshared/Bio/CAPS/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/GFF/ -rw-r--r-- root/root 14092 2009-06-23 15:05 ./usr/share/pyshared/Bio/GFF/__init__.py -rw-r--r-- root/root 3825 2008-10-23 18:37 ./usr/share/pyshared/Bio/GFF/GenericTools.py -rw-r--r-- root/root 20348 2008-11-27 11:13 ./usr/share/pyshared/Bio/GFF/easy.py -rw-r--r-- root/root 1782 2002-08-21 21:05 ./usr/share/pyshared/Bio/GFF/binning.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Geo/ -rw-r--r-- root/root 3141 2007-09-12 06:37 ./usr/share/pyshared/Bio/Geo/Record.py -rw-r--r-- root/root 1980 2008-06-28 03:50 ./usr/share/pyshared/Bio/Geo/__init__.py -rw-r--r-- root/root 11685 2008-12-05 11:24 ./usr/share/pyshared/Bio/PubMed.py -rw-r--r-- root/root 4883 2008-11-28 01:51 ./usr/share/pyshared/Bio/Index.py -rw-r--r-- root/root 2642 2008-10-23 17:01 ./usr/share/pyshared/Bio/PropertyManager.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Wise/ -rw-r--r-- root/root 4014 2008-10-22 22:39 ./usr/share/pyshared/Bio/Wise/__init__.py -rw-r--r-- root/root 4323 2008-10-06 18:23 ./usr/share/pyshared/Bio/Wise/dnal.py -rw-r--r-- root/root 3765 2008-03-15 23:06 ./usr/share/pyshared/Bio/Wise/psw.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/NMR/ -rw-r--r-- root/root 156 2004-05-13 17:58 ./usr/share/pyshared/Bio/NMR/__init__.py -rw-r--r-- root/root 7602 2008-11-28 04:16 ./usr/share/pyshared/Bio/NMR/xpktools.py -rw-r--r-- root/root 2588 2008-11-28 04:08 ./usr/share/pyshared/Bio/NMR/NOEtools.py -rw-r--r-- root/root 2714 2004-03-21 16:56 ./usr/share/pyshared/Bio/triefind.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/KEGG/ drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/KEGG/Compound/ -rw-r--r-- root/root 6927 2008-12-31 17:13 ./usr/share/pyshared/Bio/KEGG/Compound/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/KEGG/Enzyme/ -rw-r--r-- root/root 11616 2009-02-03 18:10 ./usr/share/pyshared/Bio/KEGG/Enzyme/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/KEGG/Map/ -rw-r--r-- root/root 1549 2008-06-28 03:50 ./usr/share/pyshared/Bio/KEGG/Map/__init__.py -rw-r--r-- root/root 2731 2004-05-13 17:58 ./usr/share/pyshared/Bio/KEGG/__init__.py -rw-r--r-- root/root 4183 2009-05-08 22:20 ./usr/share/pyshared/Bio/kNN.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Compass/ -rw-r--r-- root/root 8765 2008-11-27 04:28 ./usr/share/pyshared/Bio/Compass/__init__.py -rw-r--r-- root/root 8640 2009-05-08 22:20 ./usr/share/pyshared/Bio/NaiveBayes.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Statistics/ -rw-r--r-- root/root 3884 2008-11-17 03:49 ./usr/share/pyshared/Bio/Statistics/lowess.py -rw-r--r-- root/root 27 2004-05-08 07:42 ./usr/share/pyshared/Bio/Statistics/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/SVDSuperimposer/ -rw-r--r-- root/root 4860 2008-11-01 07:31 ./usr/share/pyshared/Bio/SVDSuperimposer/SVDSuperimposer.py -rw-r--r-- root/root 294 2004-03-21 15:26 ./usr/share/pyshared/Bio/SVDSuperimposer/__init__.py -rw-r--r-- root/root 5580 2007-10-08 12:13 ./usr/share/pyshared/Bio/Search.py -rw-r--r-- root/root 3419 2009-03-25 06:23 ./usr/share/pyshared/Bio/stringfns.py -rw-r--r-- root/root 10569 2009-05-08 22:20 ./usr/share/pyshared/Bio/MaxEntropy.py -rw-r--r-- root/root 3118 2008-11-22 12:51 ./usr/share/pyshared/Bio/mathfns.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/UniGene/ -rw-r--r-- root/root 22312 2009-04-24 13:03 ./usr/share/pyshared/Bio/UniGene/__init__.py -rw-r--r-- root/root 19742 2009-09-16 17:19 ./usr/share/pyshared/Bio/SeqFeature.py -rw-r--r-- root/root 5112 2009-09-10 11:25 ./usr/share/pyshared/Bio/FilteredReader.py -rw-r--r-- root/root 15512 2008-10-23 16:58 ./usr/share/pyshared/Bio/ParserSupport.py -rw-r--r-- root/root 1117 2008-10-23 17:01 ./usr/share/pyshared/Bio/distance.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Cluster/ -rw-r--r-- root/root 25090 2009-09-11 04:58 ./usr/share/pyshared/Bio/Cluster/__init__.py -rw-r--r-- root/root 2704 2009-09-10 11:25 ./usr/share/pyshared/Bio/EZRetrieve.py -rw-r--r-- root/root 2286 2008-11-29 05:01 ./usr/share/pyshared/Bio/HotRand.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Crystal/ -rw-r--r-- root/root 8243 2008-11-27 13:18 ./usr/share/pyshared/Bio/Crystal/__init__.py -rw-r--r-- root/root 5666 2009-06-18 11:09 ./usr/share/pyshared/Bio/Translate.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Medline/ -rw-r--r-- root/root 6470 2009-09-10 05:16 ./usr/share/pyshared/Bio/Medline/__init__.py -rw-r--r-- root/root 542 2009-09-22 16:25 ./usr/share/pyshared/Bio/__init__.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/pyshared/Bio/Clustalw/ -rw-r--r-- root/root 19822 2009-08-24 11:31 ./usr/share/pyshared/Bio/Clustalw/__init__.py -rw-r--r-- root/root 5642 2009-09-10 11:25 ./usr/share/pyshared/Bio/File.py -rw-r--r-- root/root 29392 2009-08-21 14:24 ./usr/share/pyshared/Bio/SeqRecord.py -rw-r--r-- root/root 4408 2008-10-29 17:30 ./usr/share/pyshared/Bio/listfns.py drwxr-xr-x root/root 0 2009-11-09 02:54 ./usr/share/python-support/ -rw-r--r-- root/root 17572 2009-11-09 02:54 ./usr/share/python-support/python-biopython.public python-biopython_1.52-1_sparc.changes: Format: 1.8 Date: Wed, 30 Sep 2009 10:16:03 +0000 Source: python-biopython Binary: python-biopython python-biopython-doc python-biopython-sql Architecture: sparc Version: 1.52-1 Distribution: lucid Urgency: low Maintainer: Ubuntu/sparc Build Daemon Changed-By: Philipp Benner Description: python-biopython - Python library for bioinformatics python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema Changes: python-biopython (1.52-1) unstable; urgency=low . * New upstream release. Checksums-Sha1: a79e6e7f339380ed2933efc333266b098e06e7d3 929498 python-biopython_1.52-1_sparc.deb Checksums-Sha256: 1db088ba4c9b0a2e3c7a042578474e694d7ddd8571edf2bd8df9b936871b9845 929498 python-biopython_1.52-1_sparc.deb Files: 6e2762735d13a30495cf0abfcbe4370e 929498 python optional python-biopython_1.52-1_sparc.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/python-biopython-1.52 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libglib2.0-0 mime-support m4 gettext file wise po-debconf python-numpy quilt python2.6 libcroco3 python-support libxml2 libpython2.6 libmysqlclient16 python-all-dev python-all python-dev man-db intltool-debian liblapack3gf python-reportlab html2text diffstat gettext-base flex python2.6-dev debhelper python libmagic1 libblas3gf python-central libgfortran3 libsqlite3-0 bsdmainutils libpcre3 python-mysqldb libncursesw5 mysql-common (Reading database ... 13576 files and directories currently installed.) Removing wise ... Removing python-numpy ... Removing quilt ... Purging configuration files for quilt ... Removing python-all-dev ... Removing python-all ... Removing python-dev ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing python-reportlab ... Removing diffstat ... Removing flex ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package flex should be updated. Removing python2.6-dev ... Removing debhelper ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing python-central ... Purging configuration files for python-central ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing python-mysqldb ... Removing m4 ... Removing file ... Purging configuration files for file ... Removing po-debconf ... Removing python-support ... Purging configuration files for python-support ... Removing libpython2.6 ... Purging configuration files for libpython2.6 ... Removing libmysqlclient16 ... Purging configuration files for libmysqlclient16 ... Removing man-db ... Purging configuration files for man-db ... Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing python ... Purging configuration files for python ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing mysql-common ... Purging configuration files for mysql-common ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing libncursesw5 ... Purging configuration files for libncursesw5 ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libpcre3 ... Purging configuration files for libpcre3 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20091109-0255 Build needed 00:00:49, 35540k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1330792-2765345'] Scanning for processes to kill in build /home/buildd/build-1330792-2765345/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1330792-2765345'] Unmounting chroot for build 1330792-2765345... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1330792-2765345'] Removing build 1330792-2765345