RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1330788-2765341', '/home/buildd/filecache-default/07b0e8ae23cdd8e9dc498c5d57db7fa316f8ec74'] Synching the system clock with the buildd NTP service... 7 Nov 10:34:17 ntpdate[22667]: adjust time server 10.211.37.1 offset -0.103198 sec Unpacking chroot for build 1330788-2765341 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1330788-2765341'] Mounting chroot for build 1330788-2765341 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1330788-2765341', 'universe'] Attempting OGRE for universe in build-1330788-2765341 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1330788-2765341', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1330788-2765341 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1330788-2765341'] Updating debian chroot for build 1330788-2765341 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [65.9kB] Get:3 http://ftpmaster.internal lucid/main Packages [1356kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5153kB] Fetched 6575kB in 7s (916kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: diffutils The following packages will be upgraded: base-files base-passwd binutils cpp-4.4 diff g++-4.4 gcc-4.4 gcc-4.4-base insserv libacl1 libattr1 libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libgdbm3 libgomp1 libidn11 libkeyutils1 libsepol1 libstdc++6 libstdc++6-4.4-dev libtasn1-3 libtext-charwidth-perl libtext-iconv-perl libtimedate-perl libudev0 linux-libc-dev makedev python-minimal python2.6-minimal sed 33 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/27.5MB of archives. After this operation, 73.7kB disk space will be freed. WARNING: The following packages cannot be authenticated! libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 binutils base-passwd base-files diffutils diff sed python2.6-minimal python-minimal insserv libattr1 libacl1 libsepol1 libtext-charwidth-perl libtext-iconv-perl libudev0 libgdbm3 libidn11 libkeyutils1 libtasn1-3 libtimedate-perl makedev debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. (Reading database ... 10581 files and directories currently installed.) Preparing to replace libc-dev-bin 2.10.1-0ubuntu15 (using .../libc-dev-bin_2.10.1-3ubuntu1_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.10.1-0ubuntu15 (using .../libc6-dev_2.10.1-3ubuntu1_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.10.1-0ubuntu15 (using .../libc-bin_2.10.1-3ubuntu1_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.10.1-3ubuntu1) ... (Reading database ... 10581 files and directories currently installed.) Preparing to replace libc6 2.10.1-0ubuntu15 (using .../libc6_2.10.1-3ubuntu1_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.10.1-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10581 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.31-14.48 (using .../linux-libc-dev_2.6.32-2.2_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.4.1-4ubuntu8 (using .../libgomp1_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.1-4ubuntu8 (using .../cpp-4.4_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.1-4ubuntu8 (using .../gcc-4.4-base_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.2-1ubuntu3) ... (Reading database ... 10542 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.1-4ubuntu8 (using .../libgcc1_1%3a4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10542 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.1-4ubuntu8 (using .../gcc-4.4_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.1-4ubuntu8 (using .../g++-4.4_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.1-4ubuntu8 (using .../libstdc++6-4.4-dev_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.1-4ubuntu8 (using .../libstdc++6_4.4.2-1ubuntu3_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10542 files and directories currently installed.) Preparing to replace binutils 2.20-0ubuntu1 (using .../binutils_2.20-1ubuntu3_i386.deb) ... Unpacking replacement binutils ... Preparing to replace base-passwd 3.5.21 (using .../base-passwd_3.5.22_i386.deb) ... Unpacking replacement base-passwd ... Setting up base-passwd (3.5.22) ... (Reading database ... 10542 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu7 (using .../base-files_5.0.0ubuntu8_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously deselected package diffutils. (Reading database ... 10542 files and directories currently installed.) Unpacking diffutils (from .../diffutils_1%3a2.8.1-18_i386.deb) ... Replacing files in old package diff ... Setting up diffutils (1:2.8.1-18) ... (Reading database ... 10547 files and directories currently installed.) Preparing to replace diff 2.8.1-13 (using .../diff_1%3a2.8.1-18_all.deb) ... Unpacking replacement diff ... Setting up diff (1:2.8.1-18) ... (Reading database ... 10545 files and directories currently installed.) Preparing to replace sed 4.2.1-1 (using .../archives/sed_4.2.1-3_i386.deb) ... Unpacking replacement sed ... Setting up sed (4.2.1-3) ... (Reading database ... 10545 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.4~rc2-0ubuntu1 (using .../python2.6-minimal_2.6.4-1ubuntu1_i386.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.4-1ubuntu1) ... (Reading database ... 10543 files and directories currently installed.) Preparing to replace python-minimal 2.6.4~rc1-0ubuntu1 (using .../python-minimal_2.6.4-0ubuntu2_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.6.4-0ubuntu2) ... (Reading database ... 10543 files and directories currently installed.) Preparing to replace insserv 1.12.0-11 (using .../insserv_1.12.0-14_i386.deb) ... Unpacking replacement insserv ... Setting up insserv (1.12.0-14) ... (Reading database ... 10544 files and directories currently installed.) Preparing to replace libattr1 1:2.4.43-3 (using .../libattr1_1%3a2.4.44-1_i386.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.44-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10544 files and directories currently installed.) Preparing to replace libacl1 2.2.47-2 (using .../libacl1_2.2.48-1_i386.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.48-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10544 files and directories currently installed.) Preparing to replace libsepol1 2.0.37-1 (using .../libsepol1_2.0.39-1_i386.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.39-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10544 files and directories currently installed.) Preparing to replace libtext-charwidth-perl 0.04-5build1 (using .../libtext-charwidth-perl_0.04-6_i386.deb) ... Unpacking replacement libtext-charwidth-perl ... Setting up libtext-charwidth-perl (0.04-6) ... (Reading database ... 10544 files and directories currently installed.) Preparing to replace libtext-iconv-perl 1.7-1build1 (using .../libtext-iconv-perl_1.7-2_i386.deb) ... Unpacking replacement libtext-iconv-perl ... Setting up libtext-iconv-perl (1.7-2) ... (Reading database ... 10545 files and directories currently installed.) Preparing to replace libudev0 147~-6 (using .../libudev0_147~-6.1_i386.deb) ... Unpacking replacement libudev0 ... Setting up libudev0 (147~-6.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 10545 files and directories currently installed.) Preparing to replace libgdbm3 1.8.3-4 (using .../libgdbm3_1.8.3-7_i386.deb) ... Unpacking replacement libgdbm3 ... Preparing to replace libidn11 1.15-1 (using .../libidn11_1.15-2_i386.deb) ... Unpacking replacement libidn11 ... Preparing to replace libkeyutils1 1.2-10 (using .../libkeyutils1_1.2-12_i386.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace libtasn1-3 2.2-1 (using .../libtasn1-3_2.3-1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libtimedate-perl 1.1600-9 (using .../libtimedate-perl_1.1900-1_all.deb) ... Unpacking replacement libtimedate-perl ... Preparing to replace makedev 2.3.1-88 (using .../makedev_2.3.1-89_all.deb) ... Unpacking replacement makedev ... Setting up libc-dev-bin (2.10.1-3ubuntu1) ... Setting up linux-libc-dev (2.6.32-2.2) ... Setting up libc6-dev (2.10.1-3ubuntu1) ... Setting up libgomp1 (4.4.2-1ubuntu3) ... Setting up cpp-4.4 (4.4.2-1ubuntu3) ... Setting up binutils (2.20-1ubuntu3) ... Setting up gcc-4.4 (4.4.2-1ubuntu3) ... Setting up libgdbm3 (1.8.3-7) ... Setting up libidn11 (1.15-2) ... Setting up libkeyutils1 (1.2-12) ... Setting up libtasn1-3 (2.3-1) ... Setting up libtimedate-perl (1.1900-1) ... Setting up makedev (2.3.1-89) ... Setting up libstdc++6-4.4-dev (4.4.2-1ubuntu3) ... Setting up g++-4.4 (4.4.2-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1330788-2765341', '--nolog', '--batch', '--archive=ubuntu', '-A', '--purpose=PRIMARY', '--dist=lucid', '--comp=universe', 'python-biopython_1.52-1.dsc'] Initiating build 1330788-2765341 with 2 processor cores. Automatic build of python-biopython_1.52-1 on rothera by sbuild/i386 1.170.5 Build started at 20091107-1034 ****************************************************************************** python-biopython_1.52-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7), quilt, python-all-dev, flex, python-support, python-reportlab, python-numpy, python-mysqldb, wise Checking for already installed source dependencies... debhelper: missing quilt: missing python-all-dev: missing flex: missing python-support: missing python-reportlab: missing python-numpy: missing python-mysqldb: missing wise: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper quilt python-all-dev flex python-support python-reportlab python-numpy python-mysqldb wise Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils diffstat file gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-central python-dev python2.6 python2.6-dev Suggested packages: wamerican wordlist whois vacation dh-make bison gettext-doc groff less www-browser libmail-box-perl python-doc python-tk python-profiler python-egenix-mxdatetime mysql-server-5.1 mysql-server python-mysqldb-dbg python-numpy-doc python-numpy-dbg python-nose pdf-viewer python-egenix-mxtexttools python-reportlab-doc python2.6-doc python2.6-profiler procmail graphviz wise-doc Recommended packages: curl wget lynx cvs libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl python-reportlab-accel python-renderpm python-imaging The following NEW packages will be installed: bsdmainutils debhelper diffstat file flex gettext gettext-base groff-base html2text intltool-debian libblas3gf libcroco3 libgfortran3 libglib2.0-0 liblapack3gf libmagic1 libmysqlclient16 libncursesw5 libpcre3 libpython2.6 libsqlite3-0 libxml2 m4 man-db mime-support mysql-common po-debconf python python-all python-all-dev python-central python-dev python-mysqldb python-numpy python-reportlab python-support python2.6 python2.6-dev quilt wise 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 6550kB/28.9MB of archives. After this operation, 87.6MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! m4 flex libmagic1 file libpcre3 libglib2.0-0 libncursesw5 libsqlite3-0 libxml2 mime-support python2.6 python python-central bsdmainutils gettext-base groff-base man-db python-support html2text libcroco3 gettext intltool-debian po-debconf debhelper diffstat libgfortran3 libblas3gf liblapack3gf mysql-common libmysqlclient16 libpython2.6 python-all python2.6-dev python-dev python-all-dev python-mysqldb python-numpy python-reportlab quilt wise Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main python-mysqldb 1.2.2-10 [98.5kB] Get:2 http://ftpmaster.internal lucid/main python-numpy 1:1.3.0-3 [1777kB] Get:3 http://ftpmaster.internal lucid/main python-reportlab 2.3-0ubuntu1 [521kB] Get:4 http://ftpmaster.internal lucid/universe wise 2.4.1-7 [4153kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6550kB in 0s (19.1MB/s) Selecting previously deselected package m4. (Reading database ... 10560 files and directories currently installed.) Unpacking m4 (from .../archives/m4_1.4.13-2_i386.deb) ... Selecting previously deselected package flex. Unpacking flex (from .../flex_2.5.35-7ubuntu1_i386.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_i386.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_7.8-3_i386.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.22.2-0ubuntu1_i386.deb) ... Selecting previously deselected package libncursesw5. Unpacking libncursesw5 (from .../libncursesw5_5.7+20090803-2ubuntu2_i386.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.6.16-1ubuntu1_i386.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.5.dfsg-1ubuntu1_i386.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.46-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.4-1ubuntu1_i386.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-central. Unpacking python-central (from .../python-central_0.6.11ubuntu9_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_i386.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu2_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-6_i386.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.6-3_i386.deb) ... Selecting previously deselected package python-support. Unpacking python-support (from .../python-support_1.0.3ubuntu2_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_i386.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-8ubuntu2_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.3ubuntu2_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1_i386.deb) ... Selecting previously deselected package libgfortran3. Unpacking libgfortran3 (from .../libgfortran3_4.4.2-1ubuntu3_i386.deb) ... Selecting previously deselected package libblas3gf. Unpacking libblas3gf (from .../libblas3gf_1.2-2_i386.deb) ... Selecting previously deselected package liblapack3gf. Unpacking liblapack3gf (from .../liblapack3gf_3.2.1-2_i386.deb) ... Selecting previously deselected package mysql-common. Unpacking mysql-common (from .../mysql-common_5.1.37-1ubuntu5_all.deb) ... Selecting previously deselected package libmysqlclient16. Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.37-1ubuntu5_i386.deb) ... Selecting previously deselected package libpython2.6. Unpacking libpython2.6 (from .../libpython2.6_2.6.4-1ubuntu1_i386.deb) ... Selecting previously deselected package python-all. Unpacking python-all (from .../python-all_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python2.6-dev. Unpacking python2.6-dev (from .../python2.6-dev_2.6.4-1ubuntu1_i386.deb) ... Selecting previously deselected package python-dev. Unpacking python-dev (from .../python-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-all-dev. Unpacking python-all-dev (from .../python-all-dev_2.6.4-0ubuntu2_all.deb) ... Selecting previously deselected package python-mysqldb. Unpacking python-mysqldb (from .../python-mysqldb_1.2.2-10_i386.deb) ... Selecting previously deselected package python-numpy. Unpacking python-numpy (from .../python-numpy_1%3a1.3.0-3_i386.deb) ... Selecting previously deselected package python-reportlab. Unpacking python-reportlab (from .../python-reportlab_2.3-0ubuntu1_all.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.46-8ubuntu1_all.deb) ... Selecting previously deselected package wise. Unpacking wise (from .../archives/wise_2.4.1-7_i386.deb) ... Setting up m4 (1.4.13-2) ... Setting up flex (2.5.35-7ubuntu1) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package flex should be updated. Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up libpcre3 (7.8-3) ... Setting up libglib2.0-0 (2.22.2-0ubuntu1) ... Setting up libncursesw5 (5.7+20090803-2ubuntu2) ... Setting up libsqlite3-0 (3.6.16-1ubuntu1) ... Setting up libxml2 (2.7.5.dfsg-1ubuntu1) ... Setting up mime-support (3.46-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.4-1ubuntu1) ... Setting up python (2.6.4-0ubuntu2) ... Setting up python-central (0.6.11ubuntu9) ... Setting up bsdmainutils (6.1.10ubuntu4) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu2) ... Setting up groff-base (1.20.1-6) ... Setting up man-db (2.5.6-3) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up python-support (1.0.3ubuntu2) ... Setting up html2text (1.3.2a-14) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.3ubuntu2) ... Setting up diffstat (1.47-1) ... Setting up libgfortran3 (4.4.2-1ubuntu3) ... Setting up libblas3gf (1.2-2) ... Setting up liblapack3gf (3.2.1-2) ... Setting up mysql-common (5.1.37-1ubuntu5) ... Setting up libmysqlclient16 (5.1.37-1ubuntu5) ... Setting up libpython2.6 (2.6.4-1ubuntu1) ... Setting up python-all (2.6.4-0ubuntu2) ... Setting up python2.6-dev (2.6.4-1ubuntu1) ... Setting up python-dev (2.6.4-0ubuntu2) ... Setting up python-all-dev (2.6.4-0ubuntu2) ... Setting up python-mysqldb (1.2.2-10) ... Setting up python-numpy (1:1.3.0-3) ... Setting up python-reportlab (2.3-0ubuntu1) ... Setting up quilt (0.46-8ubuntu1) ... Setting up wise (2.4.1-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for python-support ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.10.1-3ubuntu1 make_3.81-6 dpkg-dev_1.15.4ubuntu2 g++-4.4_4.4.2-1ubuntu3 gcc-4.4_4.4.2-1ubuntu3 binutils_2.20-1ubuntu3 libstdc++6_4.4.2-1ubuntu3 libstdc++6-4.4-dev_4.4.2-1ubuntu3 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Wed Sep 30 13:10:41 2009 BST using DSA key ID EB88E930 gpg: Can't check signature: public key not found dpkg-source: extracting python-biopython in python-biopython-1.52 dpkg-source: unpacking python-biopython_1.52.orig.tar.gz dpkg-source: applying /home/buildd/build-1330788-2765341/python-biopython_1.52-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package python-biopython dpkg-buildpackage: source version 1.52-1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 No patch removed rm -rf .pc debian/stamp-patched dh_testdir dh_testroot python2.6 setup.py clean running clean rm -f -r debian/python2.6-tmp dh_testdir dh_testroot dh_clean rm -f build-stamp rm -f Tests/*.pyc rm -f Tests/Graphics/*.eps rm -f Tests/Graphics/*.pdf rm -f Tests/dump rm -f Tests/NeuralNetwork/patternio.txt rm -f -r Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa.idx rm -f -r build debian/rules build QUILT_PATCHES=debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 01-enable-mmCIF.patch patching file setup.py Hunk #1 succeeded at 302 (offset -38 lines). Now at patch 01-enable-mmCIF.patch touch debian/stamp-patched echo i386 i386 yes | python2.6 setup.py build running build running build_py creating build creating build/lib.linux-i686-2.6 creating build/lib.linux-i686-2.6/Bio copying Bio/Transcribe.py -> build/lib.linux-i686-2.6/Bio copying Bio/pairwise2.py -> build/lib.linux-i686-2.6/Bio copying Bio/MarkovModel.py -> build/lib.linux-i686-2.6/Bio copying Bio/Search.py -> build/lib.linux-i686-2.6/Bio copying Bio/EZRetrieve.py -> build/lib.linux-i686-2.6/Bio copying Bio/DocSQL.py -> build/lib.linux-i686-2.6/Bio copying Bio/mathfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/utils.py -> build/lib.linux-i686-2.6/Bio copying Bio/SeqFeature.py -> build/lib.linux-i686-2.6/Bio copying Bio/Translate.py -> build/lib.linux-i686-2.6/Bio copying Bio/HotRand.py -> build/lib.linux-i686-2.6/Bio copying Bio/MaxEntropy.py -> build/lib.linux-i686-2.6/Bio copying Bio/File.py -> build/lib.linux-i686-2.6/Bio copying Bio/Seq.py -> build/lib.linux-i686-2.6/Bio copying Bio/distance.py -> build/lib.linux-i686-2.6/Bio copying Bio/FilteredReader.py -> build/lib.linux-i686-2.6/Bio copying Bio/stringfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/__init__.py -> build/lib.linux-i686-2.6/Bio copying Bio/ParserSupport.py -> build/lib.linux-i686-2.6/Bio copying Bio/Index.py -> build/lib.linux-i686-2.6/Bio copying Bio/NetCatch.py -> build/lib.linux-i686-2.6/Bio copying Bio/SeqRecord.py -> build/lib.linux-i686-2.6/Bio copying Bio/PubMed.py -> build/lib.linux-i686-2.6/Bio copying Bio/NaiveBayes.py -> build/lib.linux-i686-2.6/Bio copying Bio/listfns.py -> build/lib.linux-i686-2.6/Bio copying Bio/triefind.py -> build/lib.linux-i686-2.6/Bio copying Bio/LogisticRegression.py -> build/lib.linux-i686-2.6/Bio copying Bio/kNN.py -> build/lib.linux-i686-2.6/Bio copying Bio/PropertyManager.py -> build/lib.linux-i686-2.6/Bio creating build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/FormatConvert.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/__init__.py -> build/lib.linux-i686-2.6/Bio/Align copying Bio/Align/Generic.py -> build/lib.linux-i686-2.6/Bio/Align creating build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-i686-2.6/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-i686-2.6/Bio/Align/Applications creating build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-i686-2.6/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-i686-2.6/Bio/AlignIO creating build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Motif.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/__init__.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Parser.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/CompareAceStandalone.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/AlignAceStandalone.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Applications.py -> build/lib.linux-i686-2.6/Bio/AlignAce copying Bio/AlignAce/Scanner.py -> build/lib.linux-i686-2.6/Bio/AlignAce creating build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> build/lib.linux-i686-2.6/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> build/lib.linux-i686-2.6/Bio/Alphabet creating build/lib.linux-i686-2.6/Bio/Application copying Bio/Application/__init__.py -> build/lib.linux-i686-2.6/Bio/Application creating build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.linux-i686-2.6/Bio/Blast copying Bio/Blast/Record.py -> build/lib.linux-i686-2.6/Bio/Blast creating build/lib.linux-i686-2.6/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.linux-i686-2.6/Bio/CAPS creating build/lib.linux-i686-2.6/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.linux-i686-2.6/Bio/Compass creating build/lib.linux-i686-2.6/Bio/Clustalw copying Bio/Clustalw/__init__.py -> build/lib.linux-i686-2.6/Bio/Clustalw creating build/lib.linux-i686-2.6/Bio/Crystal copying Bio/Crystal/__init__.py -> build/lib.linux-i686-2.6/Bio/Crystal creating build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.linux-i686-2.6/Bio/Data copying Bio/Data/__init__.py -> build/lib.linux-i686-2.6/Bio/Data creating build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.linux-i686-2.6/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.linux-i686-2.6/Bio/Emboss creating build/lib.linux-i686-2.6/Bio/Encodings copying Bio/Encodings/IUPACEncoding.py -> build/lib.linux-i686-2.6/Bio/Encodings copying Bio/Encodings/__init__.py -> build/lib.linux-i686-2.6/Bio/Encodings creating build/lib.linux-i686-2.6/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.linux-i686-2.6/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.linux-i686-2.6/Bio/Entrez creating build/lib.linux-i686-2.6/Bio/Enzyme copying Bio/Enzyme/__init__.py -> build/lib.linux-i686-2.6/Bio/Enzyme creating build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.linux-i686-2.6/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-i686-2.6/Bio/ExPASy creating build/lib.linux-i686-2.6/Bio/Fasta copying Bio/Fasta/FastaAlign.py -> build/lib.linux-i686-2.6/Bio/Fasta copying Bio/Fasta/__init__.py -> build/lib.linux-i686-2.6/Bio/Fasta creating build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> build/lib.linux-i686-2.6/Bio/FSSP copying Bio/FSSP/__init__.py -> build/lib.linux-i686-2.6/Bio/FSSP creating build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/Evolver.py -> build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/__init__.py -> build/lib.linux-i686-2.6/Bio/GA copying Bio/GA/Organism.py -> build/lib.linux-i686-2.6/Bio/GA creating build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> build/lib.linux-i686-2.6/Bio/GA/Crossover creating build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> build/lib.linux-i686-2.6/Bio/GA/Mutation creating build/lib.linux-i686-2.6/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> build/lib.linux-i686-2.6/Bio/GA/Repair creating build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> build/lib.linux-i686-2.6/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> build/lib.linux-i686-2.6/Bio/GA/Selection creating build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/LocationParser.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.linux-i686-2.6/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.linux-i686-2.6/Bio/GenBank creating build/lib.linux-i686-2.6/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.linux-i686-2.6/Bio/Geo copying Bio/Geo/Record.py -> build/lib.linux-i686-2.6/Bio/Geo creating build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/easy.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/GenericTools.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/__init__.py -> build/lib.linux-i686-2.6/Bio/GFF copying Bio/GFF/binning.py -> build/lib.linux-i686-2.6/Bio/GFF creating build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-i686-2.6/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.linux-i686-2.6/Bio/Graphics creating build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram creating build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-i686-2.6/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.linux-i686-2.6/Bio/HMM creating build/lib.linux-i686-2.6/Bio/InterPro copying Bio/InterPro/__init__.py -> build/lib.linux-i686-2.6/Bio/InterPro creating build/lib.linux-i686-2.6/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG creating build/lib.linux-i686-2.6/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Compound creating build/lib.linux-i686-2.6/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Enzyme creating build/lib.linux-i686-2.6/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.linux-i686-2.6/Bio/KEGG/Map creating build/lib.linux-i686-2.6/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.linux-i686-2.6/Bio/Medline creating build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/Motif.py -> build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/__init__.py -> build/lib.linux-i686-2.6/Bio/MEME copying Bio/MEME/Parser.py -> build/lib.linux-i686-2.6/Bio/MEME creating build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/_Motif.py -> build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/Thresholds.py -> build/lib.linux-i686-2.6/Bio/Motif copying Bio/Motif/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif creating build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> build/lib.linux-i686-2.6/Bio/Motif/Parsers creating build/lib.linux-i686-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/_AlignAce.py -> build/lib.linux-i686-2.6/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Motif/Applications creating build/lib.linux-i686-2.6/Bio/Ndb copying Bio/Ndb/__init__.py -> build/lib.linux-i686-2.6/Bio/Ndb creating build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork creating build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation creating build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene creating build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.linux-i686-2.6/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.linux-i686-2.6/Bio/Nexus creating build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.linux-i686-2.6/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.linux-i686-2.6/Bio/NMR creating build/lib.linux-i686-2.6/Bio/Parsers copying Bio/Parsers/__init__.py -> build/lib.linux-i686-2.6/Bio/Parsers copying Bio/Parsers/spark.py -> build/lib.linux-i686-2.6/Bio/Parsers creating build/lib.linux-i686-2.6/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.linux-i686-2.6/Bio/Pathway creating build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep copying Bio/Pathway/Rep/HashSet.py -> build/lib.linux-i686-2.6/Bio/Pathway/Rep creating build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Model.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Vector.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-i686-2.6/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.linux-i686-2.6/Bio/PDB creating build/lib.linux-i686-2.6/Bio/PDB/mmCIF copying Bio/PDB/mmCIF/__init__.py -> build/lib.linux-i686-2.6/Bio/PDB/mmCIF creating build/lib.linux-i686-2.6/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen creating build/lib.linux-i686-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> build/lib.linux-i686-2.6/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/Async creating build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> build/lib.linux-i686-2.6/Bio/PopGen/FDist creating build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-i686-2.6/Bio/PopGen/GenePop creating build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal creating build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/Prodoc.py -> build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/__init__.py -> build/lib.linux-i686-2.6/Bio/Prosite copying Bio/Prosite/Pattern.py -> build/lib.linux-i686-2.6/Bio/Prosite creating build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> build/lib.linux-i686-2.6/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.linux-i686-2.6/Bio/Restriction creating build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/__init__.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/RestrictionCompiler.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update copying Bio/Restriction/_Update/Update.py -> build/lib.linux-i686-2.6/Bio/Restriction/_Update creating build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/FileIndex.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.linux-i686-2.6/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.linux-i686-2.6/Bio/SCOP creating build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/_convert.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-i686-2.6/Bio/SeqIO creating build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-i686-2.6/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.linux-i686-2.6/Bio/SeqUtils creating build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.linux-i686-2.6/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.linux-i686-2.6/Bio/Sequencing creating build/lib.linux-i686-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-i686-2.6/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-i686-2.6/Bio/Sequencing/Applications creating build/lib.linux-i686-2.6/Bio/Statistics copying Bio/Statistics/__init__.py -> build/lib.linux-i686-2.6/Bio/Statistics copying Bio/Statistics/lowess.py -> build/lib.linux-i686-2.6/Bio/Statistics creating build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.linux-i686-2.6/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.linux-i686-2.6/Bio/SubsMat creating build/lib.linux-i686-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/SVDSuperimposer.py -> build/lib.linux-i686-2.6/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-i686-2.6/Bio/SVDSuperimposer creating build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/SProt.py -> build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.linux-i686-2.6/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.linux-i686-2.6/Bio/SwissProt creating build/lib.linux-i686-2.6/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.linux-i686-2.6/Bio/UniGene creating build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.linux-i686-2.6/Bio/Wise copying Bio/Wise/psw.py -> build/lib.linux-i686-2.6/Bio/Wise creating build/lib.linux-i686-2.6/Bio/WWW copying Bio/WWW/__init__.py -> build/lib.linux-i686-2.6/Bio/WWW creating build/lib.linux-i686-2.6/BioSQL copying BioSQL/__init__.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/DBUtils.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/Loader.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/BioSeq.py -> build/lib.linux-i686-2.6/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.linux-i686-2.6/BioSQL creating build/lib.linux-i686-2.6/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.linux-i686-2.6/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.linux-i686-2.6/Bio/Affy creating build/lib.linux-i686-2.6/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.linux-i686-2.6/Bio/Cluster creating build/lib.linux-i686-2.6/Bio/KDTree copying Bio/KDTree/__init__.py -> build/lib.linux-i686-2.6/Bio/KDTree copying Bio/KDTree/KDTree.py -> build/lib.linux-i686-2.6/Bio/KDTree creating build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_020511.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-i686-2.6/Bio/Entrez/DTDs creating build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data running build_ext building 'Bio.clistfns' extension creating build/temp.linux-i686-2.6 creating build/temp.linux-i686-2.6/Bio gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/clistfnsmodule.c -o build/temp.linux-i686-2.6/Bio/clistfnsmodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/clistfnsmodule.o -o build/lib.linux-i686-2.6/Bio/clistfns.so building 'Bio.cmathfns' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cmathfnsmodule.c -o build/temp.linux-i686-2.6/Bio/cmathfnsmodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/csupport.c -o build/temp.linux-i686-2.6/Bio/csupport.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cmathfnsmodule.o build/temp.linux-i686-2.6/Bio/csupport.o -o build/lib.linux-i686-2.6/Bio/cmathfns.so building 'Bio.cstringfns' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/cstringfnsmodule.c -o build/temp.linux-i686-2.6/Bio/cstringfnsmodule.o Bio/cstringfnsmodule.c: In function 'cstringfns_splitany': Bio/cstringfnsmodule.c:34: warning: pointer targets in initialization differ in signedness Bio/cstringfnsmodule.c:71: warning: pointer targets in passing argument 1 of 'PyString_FromStringAndSize' differ in signedness /usr/include/python2.6/stringobject.h:62: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/cstringfnsmodule.c:85: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/cstringfnsmodule.c:87: warning: pointer targets in passing argument 1 of 'PyString_FromStringAndSize' differ in signedness /usr/include/python2.6/stringobject.h:62: note: expected 'const char *' but argument is of type 'unsigned char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cstringfnsmodule.o -o build/lib.linux-i686-2.6/Bio/cstringfns.so building 'Bio.cpairwise2' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cpairwise2module.c -o build/temp.linux-i686-2.6/Bio/cpairwise2module.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cpairwise2module.o build/temp.linux-i686-2.6/Bio/csupport.o -o build/lib.linux-i686-2.6/Bio/cpairwise2.so building 'Bio.trie' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/triemodule.c -o build/temp.linux-i686-2.6/Bio/triemodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/trie.c -o build/temp.linux-i686-2.6/Bio/trie.o Bio/trie.c: In function 'Trie_set': Bio/trie.c:103: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:103: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:156: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 1 of 'strncpy' differ in signedness /usr/include/bits/string3.h:119: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:162: warning: pointer targets in passing argument 2 of 'strncpy' differ in signedness /usr/include/bits/string3.h:119: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:164: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'Trie_get': Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:229: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:229: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:235: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_get_approximate_transition': Bio/trie.c:268: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:272: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:284: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c: In function '_get_approximate_trie': Bio/trie.c:353: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:355: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:356: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'const char * __restrict__' but argument is of type 'const unsigned char *' Bio/trie.c:367: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:369: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c: In function 'Trie_has_prefix': Bio/trie.c:440: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:441: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:443: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:443: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_iterate_helper': Bio/trie.c:468: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:470: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 1 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:475: warning: pointer targets in passing argument 2 of 'strcat' differ in signedness /usr/include/bits/string3.h:143: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_with_prefix_helper': Bio/trie.c:521: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:522: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of '__builtin_strcmp' differ in signedness Bio/trie.c:524: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'const unsigned char *' Bio/trie.c:524: warning: pointer targets in passing argument 2 of 'strncmp' differ in signedness /usr/include/string.h:145: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:530: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 1 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c:536: warning: pointer targets in passing argument 2 of 'strncat' differ in signedness /usr/include/bits/string3.h:150: note: expected 'const char * __restrict__' but argument is of type 'unsigned char *' Bio/trie.c: In function '_serialize_transition': Bio/trie.c:621: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function '_deserialize_transition': Bio/trie.c:708: warning: pointer targets in passing argument 1 of 'strlen' differ in signedness /usr/include/string.h:397: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c:708: warning: pointer targets in passing argument 1 of '__strdup' differ in signedness /usr/include/bits/string2.h:1303: note: expected 'const char *' but argument is of type 'unsigned char *' Bio/trie.c: In function 'test': Bio/trie.c:752: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:753: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:754: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:755: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:757: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:758: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:759: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:760: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:762: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:763: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:765: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:768: warning: pointer targets in passing argument 2 of 'Trie_set' differ in signedness Bio/trie.c:57: note: expected 'const unsigned char *' but argument is of type 'char *' Bio/trie.c:769: warning: pointer targets in passing argument 2 of 'Trie_get' differ in signedness Bio/trie.c:207: note: expected 'const unsigned char *' but argument is of type 'char *' gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/triemodule.o build/temp.linux-i686-2.6/Bio/trie.o -o build/lib.linux-i686-2.6/Bio/trie.so building 'Bio.cMarkovModel' extension gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/cMarkovModelmodule.c -o build/temp.linux-i686-2.6/Bio/cMarkovModelmodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/cMarkovModelmodule.o build/temp.linux-i686-2.6/Bio/csupport.o -o build/lib.linux-i686-2.6/Bio/cMarkovModel.so building 'Bio.PDB.mmCIF.MMCIFlex' extension creating build/temp.linux-i686-2.6/Bio/PDB creating build/temp.linux-i686-2.6/Bio/PDB/mmCIF gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/lex.yy.c -o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/lex.yy.o mmcif.lex:52: warning: function declaration isn't a prototype lex.yy.c:1040: warning: 'yyunput' defined but not used lex.yy.c:1086: warning: 'input' defined but not used gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -IBio -I/usr/include/python2.6 -c Bio/PDB/mmCIF/MMCIFlexmodule.c -o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_open_file': Bio/PDB/mmCIF/MMCIFlexmodule.c:16: warning: implicit declaration of function 'mmcif_set_file' Bio/PDB/mmCIF/MMCIFlexmodule.c: In function 'MMCIFlex_get_token': Bio/PDB/mmCIF/MMCIFlexmodule.c:44: warning: implicit declaration of function 'mmcif_get_token' Bio/PDB/mmCIF/MMCIFlexmodule.c: At top level: Bio/PDB/mmCIF/MMCIFlexmodule.c:67: warning: function declaration isn't a prototype gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/PDB/mmCIF/lex.yy.o build/temp.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlexmodule.o -lfl -o build/lib.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlex.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-i686-2.6/Bio/Nexus gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Nexus/cnexus.c -o build/temp.linux-i686-2.6/Bio/Nexus/cnexus.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Nexus/cnexus.o -o build/lib.linux-i686-2.6/Bio/Nexus/cnexus.so building 'Bio.Restriction.DNAUtils' extension creating build/temp.linux-i686-2.6/Bio/Restriction gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/include/python2.6 -c Bio/Restriction/DNAUtils.c -o build/temp.linux-i686-2.6/Bio/Restriction/DNAUtils.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Restriction/DNAUtils.o -o build/lib.linux-i686-2.6/Bio/Restriction/DNAUtils.so building 'Bio.Cluster.cluster' extension creating build/temp.linux-i686-2.6/Bio/Cluster gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/clustermodule.c -o build/temp.linux-i686-2.6/Bio/Cluster/clustermodule.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Cluster/cluster.c -o build/temp.linux-i686-2.6/Bio/Cluster/cluster.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Cluster/clustermodule.o build/temp.linux-i686-2.6/Bio/Cluster/cluster.o -o build/lib.linux-i686-2.6/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.linux-i686-2.6/Bio/KDTree gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTree.c -o build/temp.linux-i686-2.6/Bio/KDTree/KDTree.o gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/KDTree/KDTreemodule.c -o build/temp.linux-i686-2.6/Bio/KDTree/KDTreemodule.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/KDTree/KDTree.o build/temp.linux-i686-2.6/Bio/KDTree/KDTreemodule.o -o build/lib.linux-i686-2.6/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.linux-i686-2.6/Bio/Motif gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -I/usr/lib/python2.6/dist-packages/numpy/core/include -I/usr/include/python2.6 -c Bio/Motif/_pwm.c -o build/temp.linux-i686-2.6/Bio/Motif/_pwm.o gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -O2 build/temp.linux-i686-2.6/Bio/Motif/_pwm.o -o build/lib.linux-i686-2.6/Bio/Motif/_pwm.so touch build-stamp /usr/bin/fakeroot debian/rules binary echo i386 i386 yes | python2.6 setup.py build running build running build_py running build_ext touch build-stamp dh_testdir dh_testroot yes | python2.6 setup.py install --root /build/buildd/python-biopython-1.52/debian/python2.6-tmp --install-layout=deb running install running build running build_py running build_ext running install_lib creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6 creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Transcribe.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/pairwise2.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/MarkovModel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Search.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/EZRetrieve.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/DocSQL.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/mathfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/SeqFeature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Translate.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/HotRand.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/MaxEntropy.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/File.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Seq.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/distance.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/FilteredReader.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/stringfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/ParserSupport.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/Index.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/NetCatch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/SeqRecord.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/PubMed.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/NaiveBayes.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/listfns.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/triefind.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/LogisticRegression.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/kNN.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/PropertyManager.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/AlignInfo.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/FormatConvert.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align copying build/lib.linux-i686-2.6/Bio/Align/Generic.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Muscle.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_TCoffee.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Prank.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Dialign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Clustalw.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Probcons.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications copying build/lib.linux-i686-2.6/Bio/Align/Applications/_Mafft.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/NexusIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/EmbossIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/ClustalIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/StockholmIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/FastaIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/Interfaces.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO copying build/lib.linux-i686-2.6/Bio/AlignIO/PhylipIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/CompareAceStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/AlignAceStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce copying build/lib.linux-i686-2.6/Bio/AlignAce/Scanner.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/IUPAC.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet copying build/lib.linux-i686-2.6/Bio/Alphabet/Reduced.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application copying build/lib.linux-i686-2.6/Bio/Application/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIStandalone.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIWWW.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/NCBIXML.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/ParseBlastTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast copying build/lib.linux-i686-2.6/Bio/Blast/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS copying build/lib.linux-i686-2.6/Bio/CAPS/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass copying build/lib.linux-i686-2.6/Bio/Compass/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw copying build/lib.linux-i686-2.6/Bio/Clustalw/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal copying build/lib.linux-i686-2.6/Bio/Crystal/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/IUPACData.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/CodonTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data copying build/lib.linux-i686-2.6/Bio/Data/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/PrimerSearch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/Primer3.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss copying build/lib.linux-i686-2.6/Bio/Emboss/Applications.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-i686-2.6/Bio/Encodings/IUPACEncoding.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings copying build/lib.linux-i686-2.6/Bio/Encodings/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-i686-2.6/Bio/Entrez/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez copying build/lib.linux-i686-2.6/Bio/Entrez/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/taxon.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/egquery.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eSpell.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/eLink_020511.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs copying build/lib.linux-i686-2.6/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/DTDs creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme copying build/lib.linux-i686-2.6/Bio/Enzyme/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Enzyme.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Prodoc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/Prosite.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy copying build/lib.linux-i686-2.6/Bio/ExPASy/ScanProsite.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-i686-2.6/Bio/Fasta/FastaAlign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta copying build/lib.linux-i686-2.6/Bio/Fasta/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/fssp_rec.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/FSSPTools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP copying build/lib.linux-i686-2.6/Bio/FSSP/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/Evolver.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA copying build/lib.linux-i686-2.6/Bio/GA/Organism.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/GeneralPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/Point.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/TwoPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/General.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover copying build/lib.linux-i686-2.6/Bio/GA/Crossover/Uniform.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/Simple.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation copying build/lib.linux-i686-2.6/Bio/GA/Mutation/General.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-i686-2.6/Bio/GA/Repair/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair copying build/lib.linux-i686-2.6/Bio/GA/Repair/Stabilizing.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Diversity.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/RouletteWheel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Abstract.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection copying build/lib.linux-i686-2.6/Bio/GA/Selection/Tournament.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/LocationParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/Scanner.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank copying build/lib.linux-i686-2.6/Bio/GenBank/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-i686-2.6/Bio/Geo/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo copying build/lib.linux-i686-2.6/Bio/Geo/Record.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/easy.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/GenericTools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF copying build/lib.linux-i686-2.6/Bio/GFF/binning.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/DisplayRepresentation.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/Distribution.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/BasicChromosome.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics copying build/lib.linux-i686-2.6/Bio/Graphics/Comparative.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Track.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram copying build/lib.linux-i686-2.6/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/MarkovModel.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/Utilities.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/DynamicProgramming.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM copying build/lib.linux-i686-2.6/Bio/HMM/Trainer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro copying build/lib.linux-i686-2.6/Bio/InterPro/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG copying build/lib.linux-i686-2.6/Bio/KEGG/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound copying build/lib.linux-i686-2.6/Bio/KEGG/Compound/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme copying build/lib.linux-i686-2.6/Bio/KEGG/Enzyme/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map copying build/lib.linux-i686-2.6/Bio/KEGG/Map/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline copying build/lib.linux-i686-2.6/Bio/Medline/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME copying build/lib.linux-i686-2.6/Bio/MEME/Parser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/_Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/Thresholds.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif copying build/lib.linux-i686-2.6/Bio/Motif/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/AlignAce.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers copying build/lib.linux-i686-2.6/Bio/Motif/Parsers/MEME.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/Applications/_AlignAce.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications copying build/lib.linux-i686-2.6/Bio/Motif/_pwm.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb copying build/lib.linux-i686-2.6/Bio/Ndb/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Training.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/StopTraining.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/Layer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/BackPropagation/Network.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Motif.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Schema.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Pattern.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene copying build/lib.linux-i686-2.6/Bio/NeuralNetwork/Gene/Signature.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Nexus.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Trees.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/Nodes.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus copying build/lib.linux-i686-2.6/Bio/Nexus/cnexus.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/NOEtools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/xpktools.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR copying build/lib.linux-i686-2.6/Bio/NMR/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-i686-2.6/Bio/Parsers/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers copying build/lib.linux-i686-2.6/Bio/Parsers/spark.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway copying build/lib.linux-i686-2.6/Bio/Pathway/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/Graph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/MultiGraph.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep copying build/lib.linux-i686-2.6/Bio/Pathway/Rep/HashSet.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Selection.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Polypeptide.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/StructureBuilder.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/MMCIFParser.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Dice.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Residue.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/StructureAlignment.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Chain.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBExceptions.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/AbstractPropertyMap.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/NeighborSearch.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBList.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/NACCESS.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/FragmentMapper.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PSEA.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/ResidueDepth.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/DSSP.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Model.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Entity.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Atom.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Vector.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Superimposer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/parse_pdb_header.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/HSExposure.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/PDBIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/MMCIF2Dict.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB copying build/lib.linux-i686-2.6/Bio/PDB/Structure.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-i686-2.6/Bio/PDB/mmCIF/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF copying build/lib.linux-i686-2.6/Bio/PDB/mmCIF/MMCIFlex.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen copying build/lib.linux-i686-2.6/Bio/PopGen/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-i686-2.6/Bio/PopGen/Async/Local.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async copying build/lib.linux-i686-2.6/Bio/PopGen/Async/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Async.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist copying build/lib.linux-i686-2.6/Bio/PopGen/FDist/Utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/Utils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop copying build/lib.linux-i686-2.6/Bio/PopGen/GenePop/EasyController.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Async.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Template.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Controller.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/Cache.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/island.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/ssm_1d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/simple.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/ssm_2d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/decline_lambda.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_island.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/bottle.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data copying build/lib.linux-i686-2.6/Bio/PopGen/SimCoal/data/decline_split.par -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/data creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/Prodoc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite copying build/lib.linux-i686-2.6/Bio/Prosite/Pattern.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/Restriction_Dictionary.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/Restriction.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/RanaConfig.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction copying build/lib.linux-i686-2.6/Bio/Restriction/PrintFormat.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/RestrictionCompiler.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/_Update/Update.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update copying build/lib.linux-i686-2.6/Bio/Restriction/DNAUtils.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Des.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Dom.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/FileIndex.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Cla.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Hie.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Raf.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP copying build/lib.linux-i686-2.6/Bio/SCOP/Residues.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/IgIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/SwissIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/QualityIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/PirIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/FastaIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/_index.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/InsdcIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/Interfaces.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/_convert.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/AceIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/TabIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO copying build/lib.linux-i686-2.6/Bio/SeqIO/PhdIO.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CheckSum.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/ProtParamData.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/MeltingTemp.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/IsoelectricPoint.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CodonUsage.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/lcc.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/ProtParam.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils copying build/lib.linux-i686-2.6/Bio/SeqUtils/CodonUsageIndices.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/Phd.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/Ace.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing copying build/lib.linux-i686-2.6/Bio/Sequencing/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-i686-2.6/Bio/Sequencing/Applications/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications copying build/lib.linux-i686-2.6/Bio/Sequencing/Applications/_Novoalign.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-i686-2.6/Bio/Statistics/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics copying build/lib.linux-i686-2.6/Bio/Statistics/lowess.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/FreqTable.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat copying build/lib.linux-i686-2.6/Bio/SubsMat/MatrixInfo.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-i686-2.6/Bio/SVDSuperimposer/SVDSuperimposer.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer copying build/lib.linux-i686-2.6/Bio/SVDSuperimposer/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/SProt.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/KeyWList.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt copying build/lib.linux-i686-2.6/Bio/SwissProt/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene copying build/lib.linux-i686-2.6/Bio/UniGene/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/dnal.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise copying build/lib.linux-i686-2.6/Bio/Wise/psw.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW copying build/lib.linux-i686-2.6/Bio/WWW/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-i686-2.6/Bio/Affy/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy copying build/lib.linux-i686-2.6/Bio/Affy/CelFile.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-i686-2.6/Bio/Cluster/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster copying build/lib.linux-i686-2.6/Bio/Cluster/cluster.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/KDTree.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/KDTree/_CKDTree.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree copying build/lib.linux-i686-2.6/Bio/clistfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/cmathfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/cstringfns.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/cpairwise2.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/trie.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio copying build/lib.linux-i686-2.6/Bio/cMarkovModel.so -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio creating /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/__init__.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/DBUtils.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/Loader.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/BioSeq.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL copying build/lib.linux-i686-2.6/BioSQL/BioSeqDatabase.py -> /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Transcribe.py to Transcribe.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Search.py to Search.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/EZRetrieve.py to EZRetrieve.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/DocSQL.py to DocSQL.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/mathfns.py to mathfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Translate.py to Translate.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HotRand.py to HotRand.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/File.py to File.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Seq.py to Seq.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/distance.py to distance.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FilteredReader.py to FilteredReader.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/stringfns.py to stringfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ParserSupport.py to ParserSupport.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Index.py to Index.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NetCatch.py to NetCatch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PubMed.py to PubMed.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/listfns.py to listfns.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/triefind.py to triefind.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/LogisticRegression.py to LogisticRegression.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/kNN.py to kNN.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PropertyManager.py to PropertyManager.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/FormatConvert.py to FormatConvert.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Generic.py to Generic.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/CompareAceStandalone.py to CompareAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/AlignAceStandalone.py to AlignAceStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/AlignAce/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIStandalone.py to NCBIStandalone.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Blast/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/CAPS/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Clustalw/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/IUPACEncoding.py to IUPACEncoding.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Encodings/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/FastaAlign.py to FastaAlign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Fasta/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Evolver.py to Evolver.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Organism.py to Organism.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/GeneralPoint.py to GeneralPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Point.py to Point.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/TwoPoint.py to TwoPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Crossover/Uniform.py to Uniform.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/Simple.py to Simple.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Mutation/General.py to General.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Repair/Stabilizing.py to Stabilizing.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Diversity.py to Diversity.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/RouletteWheel.py to RouletteWheel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Abstract.py to Abstract.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GA/Selection/Tournament.py to Tournament.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/utils.py to utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/LocationParser.py to LocationParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Scanner.py to Scanner.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GenBank/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Geo/Record.py to Record.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/easy.py to easy.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/GenericTools.py to GenericTools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/GFF/binning.py to binning.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Distribution.py to Distribution.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/Comparative.py to Comparative.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/InterPro/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KEGG/Map/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Medline/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/MEME/Parser.py to Parser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/_Motif.py to _Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Thresholds.py to Thresholds.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/AlignAce.py to AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Parsers/MEME.py to MEME.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/_AlignAce.py to _AlignAce.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Motif/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Ndb/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Training.py to Training.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/StopTraining.py to StopTraining.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Layer.py to Layer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/BackPropagation/Network.py to Network.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Motif.py to Motif.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Schema.py to Schema.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NeuralNetwork/Gene/Signature.py to Signature.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nexus.py to Nexus.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Trees.py to Trees.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Nexus/Nodes.py to Nodes.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/NOEtools.py to NOEtools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/xpktools.py to xpktools.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/NMR/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Parsers/spark.py to spark.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Pathway/Rep/HashSet.py to HashSet.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Model.py to Model.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Atom.py to Atom.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PDB/mmCIF/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/Local.py to Local.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/Async/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/FDist/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Async.py to Async.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Template.py to Template.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Controller.py to Controller.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/PopGen/SimCoal/Cache.py to Cache.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Prodoc.py to Prodoc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Prosite/Pattern.py to Pattern.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/RestrictionCompiler.py to RestrictionCompiler.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Restriction/_Update/Update.py to Update.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/FileIndex.py to FileIndex.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/SVDSuperimposer.py to SVDSuperimposer.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/SProt.py to SProt.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/WWW/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/Cluster/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/Bio/KDTree/KDTree.py to KDTree.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/Loader.py to Loader.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc running install_egg_info Writing /build/buildd/python-biopython-1.52/debian/python2.6-tmp/usr/lib/python2.6/dist-packages/biopython-1.52.egg-info dh_movefiles -ppython-biopython \ -ppython-biopython-sql \ --sourcedir=debian/python2.6-tmp dh_testdir dh_testroot dh_installdocs -i dh_installchangelogs -i dh_fixperms -i dh_compress -i dh_pysupport -i dh_gencontrol -i dh_md5sums -i dh_installdeb -i dh_builddeb -i pkgstriptranslations: processing control file: ./debian/python-biopython-sql/DEBIAN/control, package python-biopython-sql, directory ./debian/python-biopython-sql pkgstriptranslations: python-biopython-sql does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/python-biopython-doc/DEBIAN/control, package python-biopython-doc, directory ./debian/python-biopython-doc pkgstriptranslations: python-biopython-doc does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython-doc/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `python-biopython-doc' in `../python-biopython-doc_1.52-1_all.deb'. pkgstriptranslations: processing control file: ./debian/python-biopython-sql/DEBIAN/control, package python-biopython-sql, directory ./debian/python-biopython-sql pkgstriptranslations: python-biopython-sql does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/python-biopython-doc/DEBIAN/control, package python-biopython-doc, directory ./debian/python-biopython-doc pkgstriptranslations: python-biopython-doc does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython-sql/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython-sql/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython-sql' in `../python-biopython-sql_1.52-1_all.deb'. dh_testdir dh_testroot dh_installdocs -a dh_installchangelogs -a dh_fixperms -a dh_compress -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: python-biopython dh_strip debug symbol extraction: packages to act on: python-biopython dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: unknown substitution variable ${python:Versions} WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `python-biopython-dbgsym' in `../python-biopython-dbgsym_1.52-1_i386.ddeb'. dh_pysupport -a dh_shlibdeps -a dpkg-shlibdeps: warning: dependency on libpthread.so.0 could be avoided if "debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Restriction/DNAUtils.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/PDB/mmCIF/MMCIFlex.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cMarkovModel.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Motif/_pwm.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Cluster/cluster.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/trie.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/Nexus/cnexus.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cmathfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/clistfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/KDTree/_CKDTree.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cstringfns.so debian/python-biopython/usr/lib/pyshared/python2.6/Bio/cpairwise2.so" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -a dh_md5sums -a dh_installdeb -a dh_builddeb -a pkgstriptranslations: processing control file: ./debian/python-biopython/DEBIAN/control, package python-biopython, directory ./debian/python-biopython pkgstriptranslations: python-biopython does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/python-biopython-sql/DEBIAN/control, package python-biopython-sql, directory ./debian/python-biopython-sql pkgstriptranslations: python-biopython-sql does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/python-biopython-doc/DEBIAN/control, package python-biopython-doc, directory ./debian/python-biopython-doc pkgstriptranslations: python-biopython-doc does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-biopython/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-biopython' in `../python-biopython_1.52-1_i386.deb'. python setup.py test running test test_Ace ... ok test_AlignIO ... ok test_AlignIO_convert ... ok test_BioSQL ... skipping. Enter your settings in Tests/setup_BioSQL.py (not important if you do not plan to use BioSQL). test_BioSQL_SeqIO ... skipping. Enter your settings in Tests/setup_BioSQL.py (not important if you do not plan to use BioSQL). test_CAPS ... ok test_Clustalw ... ok test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use Bio.Clustalw. test_Cluster ... ok test_CodonTable ... ok test_CodonUsage ... ok test_Compass ... ok test_Crystal ... ok test_Dialign_tool ... skipping. Install DIALIGN2-2 if you want to use the Bio.Align.Applications wrapper. test_DocSQL ... ok test_Emboss ... skipping. Install EMBOSS if you want to use Bio.EMBOSS. test_EmbossPhylipNew ... skipping. Install the Emboss package 'PhylipNew' if you want to use the Emboss.Applications wrappers for phylogenetic tools test_EmbossPrimer ... ok test_Entrez ... ok test_Enzyme ... ok test_FSSP ... ok test_Fasta ... ok test_File ... ok test_GACrossover ... ok test_GAMutation ... ok test_GAOrganism ... ok test_GAQueens ... ok test_GARepair ... ok test_GASelection ... ok test_GFF ... skipping. Environment is not configured for this test (not important if you do not plan to use Bio.GFF). test_GFF2 ... ok test_GenBank ... ok test_GenomeDiagram ... ok test_GraphicsBitmaps ... skipping. Install ReportLab's renderPM module if you want to create bitmaps with Bio.Graphics. test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_HotRand ... skipping. internet not available test_IsoelectricPoint ... ok test_KDTree ... ok test_KEGG ... ok test_KeyWList ... ok test_Location ... ok test_LocationParser ... ok test_LogisticRegression ... ok test_MEME ... ok test_Mafft_tool ... skipping. Install MAFFT if you want to use the Bio.Align.Applications wrapper. test_MarkovModel ... ok test_Medline ... ok test_Motif ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBIStandalone ... ok test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_qblast ... skipping. internet not available test_NNExclusiveOr ... ok test_NNGene ... ok test_NNGeneral ... ok test_Nexus ... ok test_PDB ... ok test_PDB_unit ... ok test_ParserSupport ... ok test_Pathway ... ok test_Phd ... ok test_PopGen_FDist ... skipping. Install FDist if you want to use Bio.PopGen.FDist. test_PopGen_FDist_nodepend ... ok test_PopGen_GenePop ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop. test_PopGen_GenePop_EasyController ... skipping. Install GenePop if you want to use Bio.PopGen.GenePop. test_PopGen_GenePop_nodepend ... ok test_PopGen_SimCoal ... skipping. Install SIMCOAL2 if you want to use Bio.PopGen.SimCoal. test_PopGen_SimCoal_nodepend ... ok test_Prank_tool ... skipping. Install PRANK if you want to use the Bio.Align.Applications wrapper. test_Probcons_tool ... skipping. Install PROBCONS if you want to use the Bio.Align.Applications wrapper. test_ProtParam ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SVDSuperimposer ... ok test_SeqIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_convert ... ok test_SeqIO_features ... ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqUtils ... ok test_Seq_objs ... ok test_SubsMat ... ok test_SwissProt ... ok test_TCoffee_tool ... skipping. Install TCOFFEE if you want to use the Bio.Align.Applications wrapper. test_UniGene ... ok test_UniGene_obsolete ... ok test_Wise ... FAIL test_align ... ok test_geo ... ok test_interpro ... ok test_kNN ... ok test_lowess ... ok test_pairwise2 ... ok test_prodoc ... ok test_property_manager ... ok test_prosite ... ok test_psw ... ok test_seq ... ok test_translate ... ok test_trie ... ok test_triefind ... ok Bio.Seq docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.Align.Generic docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Clustalw docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.Wise docstring test ... FAIL Bio.Wise.psw docstring test ... ok Bio.Motif docstring test ... ok Bio.Statistics.lowess docstring test ... ok ====================================================================== FAIL: Call dnal, and do a trivial check on its output. ---------------------------------------------------------------------- Traceback (most recent call last): File "test_Wise.py", line 26, in test_dnal self.assert_(sys.stdout.getvalue().startswith("dnal -kbyte 100000 seq1.fna seq2.fna")) AssertionError ====================================================================== FAIL: Call psw, and do a trivial check on its output. ---------------------------------------------------------------------- Traceback (most recent call last): File "test_Wise.py", line 31, in test_psw self.assert_(sys.stdout.getvalue().startswith("psw -kbyte 4 seq1.faa seq2.faa")) AssertionError ====================================================================== FAIL: Doctest: Bio.Wise._build_align_cmdline ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.6/doctest.py", line 2145, in runTest raise self.failureException(self.format_failure(new.getvalue())) AssertionError: Failed doctest test for Bio.Wise._build_align_cmdline File "/build/buildd/python-biopython-1.52/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 23, in _build_align_cmdline ---------------------------------------------------------------------- File "/build/buildd/python-biopython-1.52/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 26, in Bio.Wise._build_align_cmdline Failed example: _build_align_cmdline(["dnal"], ("seq1.fna", "seq2.fna"), "/tmp/output", kbyte=100000) Expected: 'dnal -kbyte 100000 seq1.fna seq2.fna > /tmp/output' Got: 'dnal -kbyte 100000 -quiet seq1.fna seq2.fna > /tmp/output' ---------------------------------------------------------------------- File "/build/buildd/python-biopython-1.52/build/lib.linux-i686-2.6/Bio/Wise/__init__.py", line 28, in Bio.Wise._build_align_cmdline Failed example: _build_align_cmdline(["psw"], ("seq1.faa", "seq2.faa"), "/tmp/output_aa") Expected: 'psw -kbyte 300000 seq1.faa seq2.faa > /tmp/output_aa' Got: 'psw -kbyte 300000 -quiet seq1.faa seq2.faa > /tmp/output_aa' ---------------------------------------------------------------------- Ran 133 tests in 82.141 seconds FAILED (failures = 2) dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../python-biopython_1.52-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20091107-1037 Publishing debug debs. chroot-autobuild/build/buildd/python-biopython-doc_1.52-1_all.deb: new debian package, version 2.0. size 4755644 bytes: control archive= 18875 bytes. 499 bytes, 14 lines control 64983 bytes, 662 lines md5sums Package: python-biopython-doc Source: python-biopython Version: 1.52-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 7408 Recommends: python-biopython (= 1.52-1) Section: doc Priority: optional Homepage: http://biopython.org Description: Documentation for the Biopython library Documentation and examples about how to use the Biopython library. chroot-autobuild/build/buildd/python-biopython-sql_1.52-1_all.deb: new debian package, version 2.0. size 27906 bytes: control archive= 1043 bytes. 902 bytes, 19 lines control 616 bytes, 8 lines md5sums 197 bytes, 7 lines * postinst #!/bin/sh 200 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython-sql Source: python-biopython Version: 1.52-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 148 Depends: python (>= 2.3), python-support (>= 0.90.0), python-mysqldb, python-biopython Conflicts: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) Replaces: python2.3-biopython-sql (<< 1.42-1), python2.4-biopython-sql (<< 1.42-1) Provides: python2.6-biopython-sql Section: python Priority: optional Homepage: http://biopython.org Description: Biopython support for the BioSQL database schema This is the Biopython interface to a BioSQL database (see www.biosql.org for details). BioPerl, BioJava and BioRuby also provide their own BioSQL interfaces onto the same shared SQL schema. Python-Version: 2.6 chroot-autobuild/build/buildd/python-biopython_1.52-1_i386.deb: new debian package, version 2.0. size 928948 bytes: control archive= 11994 bytes. 1355 bytes, 29 lines control 30412 bytes, 380 lines md5sums 193 bytes, 7 lines * postinst #!/bin/sh 196 bytes, 7 lines * prerm #!/bin/sh Package: python-biopython Version: 1.52-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 5252 Depends: python (<< 2.7), python (>= 2.6), python-support (>= 0.90.0), libc6 (>= 2.4), python-numpy, python-reportlab Recommends: python-biopython-doc (= 1.52-1) Suggests: python-tk, wise, muscle, clustalw, mafft, emboss, blast2 Conflicts: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Replaces: python2.3-biopython (<< 1.42-1), python2.4-biopython (<< 1.42-1) Provides: python2.6-biopython Section: python Priority: optional Homepage: http://biopython.org Description: Python library for bioinformatics The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. . It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. We work along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project. 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root/root 17572 2009-11-07 10:35 ./usr/share/python-support/python-biopython.public python-biopython_1.52-1_i386.changes: Format: 1.8 Date: Wed, 30 Sep 2009 10:16:03 +0000 Source: python-biopython Binary: python-biopython python-biopython-doc python-biopython-sql Architecture: all i386 Version: 1.52-1 Distribution: lucid Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Philipp Benner Description: python-biopython - Python library for bioinformatics python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema Changes: python-biopython (1.52-1) unstable; urgency=low . * New upstream release. 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Purging configuration files for libsqlite3-0 ... Removing libncursesw5 ... Purging configuration files for libncursesw5 ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libpcre3 ... Purging configuration files for libpcre3 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20091107-1037 Build needed 00:02:04, 54620k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1330788-2765341'] Scanning for processes to kill in build /home/buildd/build-1330788-2765341/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1330788-2765341'] Unmounting chroot for build 1330788-2765341... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1330788-2765341'] Removing build 1330788-2765341