probalign 1.4-3 source package in Ubuntu
Changelog
probalign (1.4-3) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream
- fix typo (s/TITILE/TITLE/)
- moved DOI+PMID to references
- separate authors by ' and '
- added eprint
* debian/control:
- cme fix dpkg-control
- debhelper 9
- removed quilt Build-Depends
- canonical Vcs URLs
* debian/copyright: DEP5
* debian/patches/hardening.patch: Propagate hardening options
[ Charles Plessy ]
* Add missing word in long description (Closes: #703253).
-- Andreas Tille <email address hidden> Thu, 14 Nov 2013 16:41:20 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Trusty | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| probalign_1.4-3.dsc | 1.3 KiB | 012d0c8eb21f9799a2c91e8579dbfdd2044d84beb6fd6ad61d063603a8480e6c |
| probalign_1.4.orig.tar.gz | 29.4 KiB | b221a27c5cbc3e5c707b0514c71301806074a2bf54047b57bd2d40497b663c29 |
| probalign_1.4-3.debian.tar.gz | 3.3 KiB | 17d7983cba2ee7025ceb71cb15e22f49f6fbe124576355e98c00decaf00db0d8 |
Available diffs
- diff from 1.4-2 (in Ubuntu) to 1.4-3 (2.7 KiB)
No changes file available.
Binary packages built by this source
- probalign: multiple sequence alignment using partition function posterior probabilities
Probalign uses partition function posterior probability estimates to
compute maximum expected accuracy multiple sequence alignments. It
performs statistically significantly better than the leading alignment
programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
datasets containing N/C terminal extensions and on datasets with long
and heterogeneous length sequences. On heteregeneous length datasets
containing repeats Probalign alignment accuracy is 10% and 15% higher
than the other three methods when standard deviation of length is at
least 300 and 400.
- probalign-dbgsym: debug symbols for package probalign
Probalign uses partition function posterior probability estimates to
compute maximum expected accuracy multiple sequence alignments. It
performs statistically significantly better than the leading alignment
programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
datasets containing N/C terminal extensions and on datasets with long
and heterogeneous length sequences. On heteregeneous length datasets
containing repeats Probalign alignment accuracy is 10% and 15% higher
than the other three methods when standard deviation of length is at
least 300 and 400.
