phyml 3:3.3.20211231-1 source package in Ubuntu

Changelog

phyml (3:3.3.20211231-1) unstable; urgency=medium

  * New upstream version
  * Delete nodup-am-init-automake.patch: applied upstream.
  * Delete no-stdc++.patch: patched code section disappeared.
  * typos.patch: fix new typo.
  * Refresh most other patches.
  * d/copyright:
      - mention doc/naturemag.bst, under LaTeX Project Public License 1 or
        more.
      - update copyright year

 -- Étienne Mollier <email address hidden>  Fri, 11 Feb 2022 17:08:37 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe science

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File Size SHA-256 Checksum
phyml_3.3.20211231-1.dsc 2.1 KiB f81338e5e22bdb41ffa23e61d2f9541a6116b715a83e16294a4633e2a6494ae7
phyml_3.3.20211231.orig.tar.gz 1.7 MiB 5822c04f1b8ad7f9ef5aecaacc124f736b78344eb8cf459a230c727152734d99
phyml_3.3.20211231-1.debian.tar.xz 26.3 KiB 1809cbef2d65605f0e3c56957a7c7f89ab4ee33b9522b870abd6028318192534

No changes file available.

Binary packages built by this source

phyml: Phylogenetic estimation using Maximum Likelihood

 PhyML is a software that estimates maximum likelihood phylogenies from
 alignments of nucleotide or amino acid sequences. It provides a wide
 range of options that were designed to facilitate standard phylogenetic
 analyses. The main strengths of PhyML lies in the large number of
 substitution models coupled to various options to search the space of
 phylogenetic tree topologies, going from very fast and efficient methods
 to slower but generally more accurate approaches. It also implements
 two methods to evaluate branch supports in a sound statistical framework
 (the non-parametric bootstrap and the approximate likelihood ratio test).
 .
 PhyML was designed to process moderate to large data sets. In theory,
 alignments with up to 4,000 sequences 2,000,000 character-long can
 be analyzed. In practice however, the amount of memory required to process
 a data set is proportional of the product of the number of sequences by their
 length. Hence, a large number of sequences can only be processed provided
 that they are short. Also, PhyML can handle long sequences provided that
 they are not numerous. With most standard personal computers, the “comfort
 zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
 character long.
 .
 This package also includes PhyTime.

phyml-dbgsym: debug symbols for phyml