RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.24-31-server #1 SMP Wed Mar 7 00:15:03 UTC 2012 x86_64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr_2.4.0-0ubuntu2~11.IS.8.04. Syncing the system clock with the buildd NTP service... 2 May 05:33:06 ntpdate[1763]: adjust time server 10.211.37.1 offset -0.000170 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'ff14b92cb769a7cff177ef641b50ac1d73315180', '/home/buildd/filecache-default/4a36cfe5acdc7534bb6966a50c3219641ea437f9'] Unpacking chroot for build ff14b92cb769a7cff177ef641b50ac1d73315180 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'ff14b92cb769a7cff177ef641b50ac1d73315180'] Mounting chroot for build ff14b92cb769a7cff177ef641b50ac1d73315180 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'ff14b92cb769a7cff177ef641b50ac1d73315180', 'deb http://ftpmaster.internal/ubuntu quantal main universe'] Overriding sources.list in build-ff14b92cb769a7cff177ef641b50ac1d73315180 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'ff14b92cb769a7cff177ef641b50ac1d73315180', 'amd64'] Updating debian chroot for build ff14b92cb769a7cff177ef641b50ac1d73315180 Ign http://ftpmaster.internal quantal InRelease Get:1 http://ftpmaster.internal quantal Release.gpg [198 B] Get:2 http://ftpmaster.internal quantal Release [49.6 kB] Get:3 http://ftpmaster.internal quantal/main amd64 Packages [1311 kB] Get:4 http://ftpmaster.internal quantal/universe amd64 Packages [4846 kB] Get:5 http://ftpmaster.internal quantal/main TranslationIndex [74 B] Get:6 http://ftpmaster.internal quantal/universe TranslationIndex [75 B] Get:7 http://ftpmaster.internal quantal/main Translation-en [740 kB] Get:8 http://ftpmaster.internal quantal/universe Translation-en [3370 kB] Fetched 10.3 MB in 7s (1379 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpp-4.7 g++-4.7 gcc-4.7 gcc-4.7-base libgcc1 libgomp1 libitm1 libquadmath0 libstdc++6 libstdc++6-4.7-dev linux-libc-dev 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 22.8 MB of archives. After this operation, 166 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libitm1 libgomp1 gcc-4.7-base libstdc++6 cpp-4.7 libquadmath0 libstdc++6-4.7-dev g++-4.7 gcc-4.7 libgcc1 linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main libitm1 amd64 4.7.0-7ubuntu1 [36.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main libgomp1 amd64 4.7.0-7ubuntu1 [27.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main gcc-4.7-base amd64 4.7.0-7ubuntu1 [15.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libstdc++6 amd64 4.7.0-7ubuntu1 [322 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main cpp-4.7 amd64 4.7.0-7ubuntu1 [5391 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libquadmath0 amd64 4.7.0-7ubuntu1 [125 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main libstdc++6-4.7-dev amd64 4.7.0-7ubuntu1 [1705 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main g++-4.7 amd64 4.7.0-7ubuntu1 [5827 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main gcc-4.7 amd64 4.7.0-7ubuntu1 [8480 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main libgcc1 amd64 1:4.7.0-7ubuntu1 [42.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main linux-libc-dev amd64 3.4.0-1.2 [865 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.8 MB in 0s (23.0 MB/s) (Reading database ... 12250 files and directories currently installed.) Preparing to replace libitm1 4.7.0-5ubuntu1 (using .../libitm1_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libitm1 ... Preparing to replace libgomp1 4.7.0-5ubuntu1 (using .../libgomp1_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.7-base 4.7.0-5ubuntu1 (using .../gcc-4.7-base_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.7-base ... Setting up gcc-4.7-base (4.7.0-7ubuntu1) ... (Reading database ... 12250 files and directories currently installed.) Preparing to replace libstdc++6 4.7.0-5ubuntu1 (using .../libstdc++6_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.7.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12250 files and directories currently installed.) Preparing to replace cpp-4.7 4.7.0-5ubuntu1 (using .../cpp-4.7_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.7 ... Preparing to replace libquadmath0 4.7.0-5ubuntu1 (using .../libquadmath0_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.7-dev 4.7.0-5ubuntu1 (using .../libstdc++6-4.7-dev_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6-4.7-dev ... Preparing to replace g++-4.7 4.7.0-5ubuntu1 (using .../g++-4.7_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement g++-4.7 ... Preparing to replace gcc-4.7 4.7.0-5ubuntu1 (using .../gcc-4.7_4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace libgcc1 1:4.7.0-5ubuntu1 (using .../libgcc1_1%3a4.7.0-7ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.7.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12250 files and directories currently installed.) Preparing to replace linux-libc-dev 3.2.0-24.37 (using .../linux-libc-dev_3.4.0-1.2_amd64.deb) ... Unpacking replacement linux-libc-dev ... Setting up libitm1 (4.7.0-7ubuntu1) ... Setting up libgomp1 (4.7.0-7ubuntu1) ... Setting up cpp-4.7 (4.7.0-7ubuntu1) ... Setting up libquadmath0 (4.7.0-7ubuntu1) ... Setting up gcc-4.7 (4.7.0-7ubuntu1) ... Setting up linux-libc-dev (3.4.0-1.2) ... Setting up g++-4.7 (4.7.0-7ubuntu1) ... Setting up libstdc++6-4.7-dev (4.7.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'ff14b92cb769a7cff177ef641b50ac1d73315180', 'amd64', 'quantal', '--nolog', '--batch', '--archive=ubuntu', '--dist=quantal', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'mustang_3.2.1-3.dsc'] Initiating build ff14b92cb769a7cff177ef641b50ac1d73315180 with 2 jobs across 2 processor cores. Automatic build of mustang_3.2.1-3 on crested by sbuild/amd64 1.170.5 Build started at 20120502-0534 ****************************************************************************** mustang_3.2.1-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9) Checking for already installed source dependencies... debhelper: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. Need to get 5819 kB of archives. After this operation, 18.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main libmagic1 amd64 5.11-1 [220 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main libpipeline1 amd64 1.2.1-1 [26.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main libxml2 amd64 2.7.8.dfsg-5.1ubuntu4 [673 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libcroco3 amd64 0.6.5-1 [99.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libunistring0 amd64 0.9.3-5 [427 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libgettextpo0 amd64 0.18.1.1-5ubuntu3 [120 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main file amd64 5.11-1 [20.0 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main bsdmainutils amd64 8.2.3ubuntu1 [200 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main gettext-base amd64 0.18.1.1-5ubuntu3 [80.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main groff-base amd64 1.21-7 [1046 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main man-db amd64 2.6.1-2 [756 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main html2text amd64 1.3.2a-15 [104 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main gettext amd64 0.18.1.1-5ubuntu3 [1188 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main dh-apparmor all 2.7.102-0ubuntu3 [9622 B] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main debhelper all 9.20120419ubuntu2 [609 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5819 kB in 0s (21.8 MB/s) Selecting previously unselected package libmagic1. (Reading database ... 12267 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.11-1_amd64.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_amd64.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4_amd64.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_amd64.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_amd64.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.11-1_amd64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_amd64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_amd64.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_amd64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419ubuntu2_all.deb) ... Setting up libmagic1 (5.11-1) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up file (5.11-1) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3) ... Setting up debhelper (9.20120419ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu8 gcc-4.7_4.7.0-7ubuntu1 g++-4.7_4.7.0-7ubuntu1 binutils_2.22-6ubuntu1 libstdc++6-4.7-dev_4.7.0-7ubuntu1 libstdc++6_4.7.0-7ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Apr 22 16:43:01 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mustang_3.2.1-3.dsc dpkg-source: info: extracting mustang in mustang-3.2.1 dpkg-source: info: unpacking mustang_3.2.1.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.1-3.debian.tar.gz dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-buildpackage: source package mustang dpkg-buildpackage: source version 3.2.1-3 dpkg-source --before-build mustang-3.2.1 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/mustang-3.2.1' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory `/build/buildd/mustang-3.2.1' dh_clean debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/mustang-3.2.1' g++ -traditional -Wall -O3 -c ./src/globals.cpp -o ./obj/globals.o g++ -traditional -Wall -O3 -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o ./src/CmdLineParser_2.cpp: In function 'void CHECK_OPTION_ARGS(CmdLine&)': ./src/CmdLineParser_2.cpp:649:18: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] g++ -traditional -Wall -O3 -c ./src/distmat.cpp -o ./obj/distmat.o g++ -traditional -Wall -O3 -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -traditional -Wall -O3 -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -traditional -Wall -O3 -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -traditional -Wall -O3 -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -traditional -Wall -O3 -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o ./src/pdb_ripper_2.cpp: In function 'int CHECK_NCHAINS_IN_PDB(char*)': ./src/pdb_ripper_2.cpp:53:6: warning: variable 'chain_id' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -traditional -Wall -O3 -c ./src/ew_2.cpp -o ./obj/ew.o ./src/ew_2.cpp: In function 'void CALCULATE_EDGE_WEIGHTS(int, int, float***)': ./src/ew_2.cpp:217:29: warning: variable 'prev_ROTMAT' set but not used [-Wunused-but-set-variable] ./src/ew_2.cpp:218:51: warning: variable 'prev_CM_S' set but not used [-Wunused-but-set-variable] ./src/ew_2.cpp:218:67: warning: variable 'prev_CM_M' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -traditional -Wall -O3 -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -traditional -Wall -O3 -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -traditional -Wall -O3 -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -traditional -Wall -O3 -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o ./src/3D_manip_functions.cpp: In function 'void coordinate_transformer(float (*)[500], float (*)[500], int, int, int, int)': ./src/3D_manip_functions.cpp:210:9: warning: variable 'AX' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o ./src/extended_lib_gen_3.cpp: In function 'void EXTENDED_LIBRARY_GENERATION()': ./src/extended_lib_gen_3.cpp:219:20: warning: variable 'AAA' set but not used [-Wunused-but-set-variable] g++ -traditional -Wall -O3 -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -traditional -Wall -O3 -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -traditional -Wall -O3 -c ./src/upgma.cpp -o ./obj/upgma.o g++ -traditional -Wall -O3 -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -traditional -Wall -O3 -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -traditional -Wall -O3 -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -traditional -Wall -O3 -c ./src/main.cpp -o ./obj/main.o g++ -traditional -Wall -O3 -o bin/mustang-3.2.1 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory `/build/buildd/mustang-3.2.1' dh_auto_test /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/mustang-3.2.1' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory `/build/buildd/mustang-3.2.1' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/mustang-3.2.1' dh_compress -X.pdb make[1]: Leaving directory `/build/buildd/mustang-3.2.1' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: mustang dh_strip debug symbol extraction: packages to act on: mustang dh_strip debug symbol extraction: ignored packages: mustang is already stripped, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 116 pkgstriptranslations: processing mustang (in debian/mustang); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mustang/DEBIAN/control, package mustang, directory debian/mustang pkgstripfiles: PNG optimization for package mustang took 0 s dpkg-deb: warning: 'debian/mustang/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `mustang' in `../mustang_3.2.1-3_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../mustang_3.2.1-3_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mustang-3.2.1 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120502-0536 chroot-autobuild/build/buildd/mustang_3.2.1-3_amd64.deb: new debian package, version 2.0. size 99738 bytes: control archive= 928 bytes. 898 bytes, 18 lines control 415 bytes, 6 lines md5sums Package: mustang Version: 3.2.1-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 250 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: mustang-testdata Section: science Priority: optional Homepage: http://www.csse.monash.edu.au/~karun/Site/mustang.html Description: multiple structural alignment of proteins Mustang is an algorithm to align multiple protein structures. Given a set of PDB files, the program uses the spatial information in the Calpha atoms of the set to produce a sequence alignment. Based on a progressive pairwise heuristic the algorithm then proceeds through a number of refinement passes. Mustang reports the multiple sequence alignment and the corresponding superposition of structures. chroot-autobuild/build/buildd/mustang_3.2.1-3_amd64.deb: drwxr-xr-x root/root 0 2012-05-02 05:36 ./ drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/ drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/bin/ -rwxr-xr-x root/root 204328 2012-05-02 05:36 ./usr/bin/mustang drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/ drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/doc/mustang/ -rw-r--r-- root/root 4345 2012-04-22 16:41 ./usr/share/doc/mustang/copyright drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/doc/mustang/examples/ -rw-r--r-- root/root 569 2009-10-07 06:17 ./usr/share/doc/mustang/examples/runtest -rw-r--r-- root/root 1671 2009-10-07 06:17 ./usr/share/doc/mustang/examples/test_zf-CCHH-small -rw-r--r-- root/root 1872 2012-04-22 16:42 ./usr/share/doc/mustang/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-02 05:36 ./usr/share/man/man1/ -rw-r--r-- root/root 1991 2012-05-02 05:36 ./usr/share/man/man1/mustang.1.gz mustang_3.2.1-3_amd64.changes: Format: 1.8 Date: Sun, 22 Apr 2012 18:18:34 +0200 Source: mustang Binary: mustang mustang-testdata Architecture: amd64 Version: 3.2.1-3 Distribution: quantal Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Andreas Tille Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Closes: 667293 Changes: mustang (3.2.1-3) unstable; urgency=low . * debian/upstream: - Use BibTeX friendly formating of authors * debian/patches/gcc-4.7.patch: Fix build issue with gcc-4.7 Closes: #667293 Checksums-Sha1: ba19fb8ea94114b40053e5f94f188ed6f241b3ee 99738 mustang_3.2.1-3_amd64.deb Checksums-Sha256: bbfd1e04743908ef7be12685a11cb05c8d258b635da4fe0363160a2334e0f729 99738 mustang_3.2.1-3_amd64.deb Files: 6f28b78ce2c8b4f9bb42a8dce7a0f158 99738 science optional mustang_3.2.1-3_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120502-0536 Build needed 00:00:29, 2100k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'ff14b92cb769a7cff177ef641b50ac1d73315180'] Scanning for processes to kill in build /home/buildd/build-ff14b92cb769a7cff177ef641b50ac1d73315180/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'ff14b92cb769a7cff177ef641b50ac1d73315180'] Unmounting chroot for build ff14b92cb769a7cff177ef641b50ac1d73315180... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'ff14b92cb769a7cff177ef641b50ac1d73315180'] Removing build ff14b92cb769a7cff177ef641b50ac1d73315180