RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '790570-1851248', '/home/buildd/filecache-default/829972110f22be79798ed8c6ae948034c015e0db'] Synching the system clock with the buildd NTP service... 18 Nov 13:57:10 ntpdate[3411]: adjust time server 10.122.37.1 offset -0.000313 sec Unpacking chroot for build 790570-1851248 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '790570-1851248'] Mounting chroot for build 790570-1851248 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '790570-1851248', 'universe'] Attempting OGRE for universe in build-790570-1851248 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '790570-1851248', 'deb http://ftpmaster.internal/ubuntu jaunty main universe'] Overriding sources.list in build-790570-1851248 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '790570-1851248'] Updating debian chroot for build 790570-1851248 Get:1 http://ftpmaster.internal jaunty Release.gpg [189B] Get:2 http://ftpmaster.internal jaunty Release [74.6kB] Get:3 http://ftpmaster.internal jaunty/main Packages [1250kB] Get:4 http://ftpmaster.internal jaunty/universe Packages [4645kB] Fetched 5970kB in 7s (786kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files bzip2 cpio cpp cpp-4.3 fakeroot g++ g++-4.3 gcc gcc-4.3 gcc-4.3-base libbz2-1.0 libdb4.7 libgcc1 libgomp1 libncurses5 libpam-foreground libpam-modules libpam-runtime libpam0g libslang2 libstdc++6 libstdc++6-4.3-dev linux-libc-dev login ncurses-base ncurses-bin passwd python2.5-minimal tzdata 30 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/17.0MB of archives. After unpacking 233kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdb4.7 libpam-runtime libpam0g libpam-modules base-files login ncurses-bin libncurses5 ncurses-base libgomp1 cpp-4.3 gcc-4.3-base libgcc1 gcc-4.3 g++-4.3 libstdc++6-4.3-dev libstdc++6 libslang2 python2.5-minimal tzdata bzip2 libbz2-1.0 cpio passwd cpp fakeroot gcc g++ libpam-foreground linux-libc-dev Authentication warning overridden. (Reading database ... 10104 files and directories currently installed.) Preparing to replace libdb4.7 4.7.25-5 (using .../libdb4.7_4.7.25-5ubuntu1_powerpc.deb) ... Unpacking replacement libdb4.7 ... Preparing to replace libpam-runtime 1.0.1-4ubuntu5 (using .../libpam-runtime_1.0.1-4ubuntu5.3_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.0.1-4ubuntu5.3) ... (Reading database ... 10104 files and directories currently installed.) Preparing to replace libpam0g 1.0.1-4ubuntu5 (using .../libpam0g_1.0.1-4ubuntu5.3_powerpc.deb) ... Unpacking replacement libpam0g ... Setting up libpam0g (1.0.1-4ubuntu5.3) ... (Reading database ... 10104 files and directories currently installed.) Preparing to replace libpam-modules 1.0.1-4ubuntu5 (using .../libpam-modules_1.0.1-4ubuntu5.3_powerpc.deb) ... Unpacking replacement libpam-modules ... Setting up libdb4.7 (4.7.25-5ubuntu1) ... Setting up libpam-modules (1.0.1-4ubuntu5.3) ... (Reading database ... 10104 files and directories currently installed.) Preparing to replace base-files 4.0.5ubuntu2 (using .../base-files_4.0.6ubuntu1_powerpc.deb) ... Unpacking replacement base-files ... Setting up base-files (4.0.6ubuntu1) ... (Reading database ... 10104 files and directories currently installed.) Preparing to replace login 1:4.1.1-1ubuntu1 (using .../login_1%3a4.1.1-5ubuntu3_powerpc.deb) ... Unpacking replacement login ... Setting up login (4.1.1-5ubuntu3) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 10102 files and directories currently installed.) Preparing to replace ncurses-bin 5.6+20071124-1ubuntu2 (using .../ncurses-bin_5.7-2ubuntu1_powerpc.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7-2ubuntu1) ... (Reading database ... 10105 files and directories currently installed.) Preparing to replace libncurses5 5.6+20071124-1ubuntu2 (using .../libncurses5_5.7-2ubuntu1_powerpc.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7-2ubuntu1) ... (Reading database ... 10105 files and directories currently installed.) Preparing to replace ncurses-base 5.6+20071124-1ubuntu2 (using .../ncurses-base_5.7-2ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7-2ubuntu1) ... (Reading database ... 10114 files and directories currently installed.) Preparing to replace libgomp1 4.3.2-2ubuntu1 (using .../libgomp1_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.3 4.3.2-2ubuntu1 (using .../cpp-4.3_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement cpp-4.3 ... Preparing to replace gcc-4.3-base 4.3.2-2ubuntu1 (using .../gcc-4.3-base_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement gcc-4.3-base ... Preparing to replace libgcc1 1:4.3.2-2ubuntu1 (using .../libgcc1_1%3a4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement libgcc1 ... Setting up gcc-4.3-base (4.3.2-2ubuntu2) ... Setting up libgcc1 (4.3.2-2ubuntu2) ... (Reading database ... 10114 files and directories currently installed.) Preparing to replace gcc-4.3 4.3.2-2ubuntu1 (using .../gcc-4.3_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement gcc-4.3 ... Preparing to replace g++-4.3 4.3.2-2ubuntu1 (using .../g++-4.3_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement g++-4.3 ... Preparing to replace libstdc++6-4.3-dev 4.3.2-2ubuntu1 (using .../libstdc++6-4.3-dev_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement libstdc++6-4.3-dev ... Preparing to replace libstdc++6 4.3.2-2ubuntu1 (using .../libstdc++6_4.3.2-2ubuntu2_powerpc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.3.2-2ubuntu2) ... (Reading database ... 10116 files and directories currently installed.) Preparing to replace libslang2 2.1.3-3ubuntu1 (using .../libslang2_2.1.3-3ubuntu3_powerpc.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.1.3-3ubuntu3) ... (Reading database ... 10116 files and directories currently installed.) Preparing to replace python2.5-minimal 2.5.2-11.1ubuntu1 (using .../python2.5-minimal_2.5.2-13ubuntu1_powerpc.deb) ... Unpacking replacement python2.5-minimal ... Setting up python2.5-minimal (2.5.2-13ubuntu1) ... (Reading database ... 10116 files and directories currently installed.) Preparing to replace tzdata 2008i-2 (using .../tzdata_2008i-3_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2008i-3) ... Current default timezone: 'Etc/UTC' Local time is now: Tue Nov 18 13:57:50 UTC 2008. Universal Time is now: Tue Nov 18 13:57:50 UTC 2008. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 10116 files and directories currently installed.) Preparing to replace bzip2 1.0.5-0.1ubuntu1 (using .../bzip2_1.0.5-1ubuntu1_powerpc.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0 1.0.5-0.1ubuntu1 (using .../libbz2-1.0_1.0.5-1ubuntu1_powerpc.deb) ... Unpacking replacement libbz2-1.0 ... Preparing to replace cpio 2.9-13ubuntu2 (using .../cpio_2.9-14ubuntu1_powerpc.deb) ... Unpacking replacement cpio ... Preparing to replace passwd 1:4.1.1-1ubuntu1 (using .../passwd_1%3a4.1.1-5ubuntu3_powerpc.deb) ... Unpacking replacement passwd ... Preparing to replace cpp 4:4.3.1-1ubuntu2 (using .../cpp_4%3a4.3.2-2ubuntu1_powerpc.deb) ... Unpacking replacement cpp ... Preparing to replace fakeroot 1.9.5ubuntu1 (using .../fakeroot_1.10.1ubuntu1_powerpc.deb) ... Unpacking replacement fakeroot ... Preparing to replace gcc 4:4.3.1-1ubuntu2 (using .../gcc_4%3a4.3.2-2ubuntu1_powerpc.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.3.1-1ubuntu2 (using .../g++_4%3a4.3.2-2ubuntu1_powerpc.deb) ... Unpacking replacement g++ ... Preparing to replace libpam-foreground 0.4-1 (using .../libpam-foreground_0.5_powerpc.deb) ... Unpacking replacement libpam-foreground ... Preparing to replace linux-libc-dev 2.6.25-2.3 (using .../linux-libc-dev_2.6.27-1.1_powerpc.deb) ... Unpacking replacement linux-libc-dev ... Setting up libgomp1 (4.3.2-2ubuntu2) ... Setting up cpp-4.3 (4.3.2-2ubuntu2) ... Setting up gcc-4.3 (4.3.2-2ubuntu2) ... Setting up libbz2-1.0 (1.0.5-1ubuntu1) ... Setting up bzip2 (1.0.5-1ubuntu1) ... Setting up cpio (2.9-14ubuntu1) ... Setting up passwd (4.1.1-5ubuntu3) ... Setting up cpp (4.3.2-2ubuntu1) ... Setting up fakeroot (1.10.1ubuntu1) ... Setting up gcc (4.3.2-2ubuntu1) ... Setting up libpam-foreground (0.5) ... Setting up linux-libc-dev (2.6.27-1.1) ... Setting up libstdc++6-4.3-dev (4.3.2-2ubuntu2) ... Setting up g++-4.3 (4.3.2-2ubuntu2) ... Setting up g++ (4.3.2-2ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '790570-1851248', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=jaunty', '--comp=universe', 'mustang_3.0-1ubuntu1.dsc'] Initiating build Automatic build of mustang_3.0-1ubuntu1 on adare by sbuild/powerpc 1.170.5 Build started at 20081118-1357 ****************************************************************************** mustang_3.0-1ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), dpatch Checking for already installed source dependencies... debhelper: missing dpatch: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: upstart-compat-sysv startup-tasks system-services upstart Use 'apt-get autoremove' to remove them. The following extra packages will be installed: bsdmainutils file gettext gettext-base groff-base html2text intltool-debian libmagic1 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make curl cvs gettext-doc groff less www-browser libmail-box-perl Recommended packages: patchutils libmail-sendmail-perl libcompress-zlib-perl The following NEW packages will be installed: bsdmainutils debhelper dpatch file gettext gettext-base groff-base html2text intltool-debian libmagic1 man-db po-debconf 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/5643kB of archives. After unpacking 20.9MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf debhelper dpatch Authentication warning overridden. Selecting previously deselected package libmagic1. (Reading database ... 10170 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_4.26-1_powerpc.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_4.26-1_powerpc.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu3_powerpc.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-4ubuntu1_powerpc.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-21_powerpc.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.2-3_powerpc.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-5_powerpc.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-4ubuntu1_powerpc.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.15ubuntu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.0.17ubuntu1_all.deb) ... Selecting previously deselected package dpatch. Unpacking dpatch (from .../archives/dpatch_2.0.30_all.deb) ... Setting up libmagic1 (4.26-1) ... Setting up file (4.26-1) ... Setting up bsdmainutils (6.1.10ubuntu3) ... Setting up gettext-base (0.17-4ubuntu1) ... Setting up groff-base (1.18.1.1-21) ... Setting up man-db (2.5.2-3) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up html2text (1.3.2a-5) ... Setting up gettext (0.17-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.15ubuntu1) ... Setting up debhelper (7.0.17ubuntu1) ... Setting up dpatch (2.0.30) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.8+20081027-0ubuntu6 make_3.81-5 dpkg-dev_1.14.22ubuntu1 g++-4.3_4.3.2-2ubuntu2 gcc-4.3_4.3.2-2ubuntu2 binutils_2.19-0ubuntu1 libstdc++6_4.3.2-2ubuntu2 libstdc++6-4.3-dev_4.3.2-2ubuntu2 ------------------------------------------------------------------------------ dpkg-source: extracting mustang in mustang-3.0 dpkg-source: unpacking mustang_3.0.orig.tar.gz dpkg-source: applying /srv/home/buildd/build-790570-1851248/mustang_3.0-1ubuntu1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mustang dpkg-buildpackage: source version 3.0-1ubuntu1 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dpatch deapply-all 04-gcc-4.3-exit not applied to ./ . 03-test_zf-cchh not applied to ./ . 02-main.cpp not applied to ./ . fakesync not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp # Clean up after the build process. rm -f obj/*.o rm -f bin/MUSTANG_v.3 rm -f mustang.1 dh_clean debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch fakesync to ./ ... ok. applying patch 02-main.cpp to ./ ... ok. applying patch 03-test_zf-cchh to ./ ... ok. applying patch 04-gcc-4.3-exit to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir # Compile Mustang: /usr/bin/make CPPFLAGS="-Wall -g -O2" make[1]: Entering directory `/build/buildd/mustang-3.0' g++ -Wall -g -O2 -c ./src/globals.cpp -o ./obj/globals.o g++ -Wall -g -O2 -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -Wall -g -O2 -c ./src/distmat.cpp -o ./obj/distmat.o g++ -Wall -g -O2 -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -Wall -g -O2 -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -Wall -g -O2 -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -Wall -g -O2 -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -Wall -g -O2 -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o ./src/pdb_ripper_2.cpp: In function 'int CHECK_NCHAINS_IN_PDB(char*)': ./src/pdb_ripper_2.cpp:62: warning: suggest parentheses around && within || ./src/pdb_ripper_2.cpp: In function 'int CHECK_NRESIDUES_IN_PDB(char*)': ./src/pdb_ripper_2.cpp:100: warning: suggest parentheses around && within || g++ -Wall -g -O2 -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -Wall -g -O2 -c ./src/ew_2.cpp -o ./obj/ew.o ./src/ew_2.cpp: In function 'void CALCULATE_EDGE_WEIGHTS(int, int, float***)': ./src/ew_2.cpp:282: warning: unused variable 'seq_iden' ./src/ew_2.cpp:526: warning: unused variable 'PRUNING_WINDOW_MIN' g++ -Wall -g -O2 -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o ./src/refine_pairalgn_2.cpp: In function 'void REFINE_PAIRWISE_ALIGNMENT(int, int, float**)': ./src/refine_pairalgn_2.cpp:86: warning: unused variable 'X' ./src/refine_pairalgn_2.cpp:78: warning: unused variable 'prev_indx' g++ -Wall -g -O2 -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -Wall -g -O2 -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -Wall -g -O2 -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -Wall -g -O2 -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o ./src/3D_manip_functions.cpp: In function 'void superpose(int, float (*)[500], float (*)[500], float (*)[4], float*, float&)': ./src/3D_manip_functions.cpp:311: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result g++ -Wall -g -O2 -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o ./src/extended_lib_gen_3.cpp: In function 'void EXTENDED_LIBRARY_GENERATION()': ./src/extended_lib_gen_3.cpp:195: warning: unused variable 'BBB' ./src/extended_lib_gen_3.cpp:204: warning: unused variable 'AAA' ./src/extended_lib_gen_3.cpp:214: warning: unused variable 'BBB' g++ -Wall -g -O2 -c ./src/progress_align_3.cpp -o ./obj/progress_align.o ./src/progress_align_3.cpp: In function 'float STR_ALGN_INIT(float*, float*)': ./src/progress_align_3.cpp:275: warning: control reaches end of non-void function g++ -Wall -g -O2 -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -Wall -g -O2 -c ./src/upgma.cpp -o ./obj/upgma.o g++ -Wall -g -O2 -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o ./src/superpose_on_core_2.cpp: In function 'void SUPERPOSE_ON_CORE(char**)': ./src/superpose_on_core_2.cpp:457: warning: unused variable 'temp_coords' g++ -Wall -g -O2 -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o ./src/multiple_superposition.cpp: In function 'void MTRXYZ(float (*)[3], float, float, float)': ./src/multiple_superposition.cpp:216: warning: array subscript is above array bounds g++ -Wall -g -O2 -c ./src/output_algn.cpp -o ./obj/output_algn.o ./src/output_algn.cpp: In function 'void OUTPUT_ALGN_MSF(time_t)': ./src/output_algn.cpp:162: warning: unused variable 'LineWidth' ./src/output_algn.cpp: In function 'void OUTPUT_ALGN_HTML(time_t)': ./src/output_algn.cpp:467: warning: comparison between signed and unsigned integer expressions ./src/output_algn.cpp: In function 'void OUTPUT_ALGN_POSTSCRIPT(time_t)': ./src/output_algn.cpp:730: warning: spurious trailing '%' in format ./src/output_algn.cpp:773: warning: spurious trailing '%' in format ./src/output_algn.cpp:825: warning: spurious trailing '%' in format g++ -Wall -g -O2 -c ./src/main.cpp -o ./obj/main.o ./src/main.cpp: In function 'void DE_ALLOC_MAXIMAL_FRAGMENT_LIB()': ./src/main.cpp:203: warning: unused variable 'ptr1' ./src/main.cpp:203: warning: unused variable 'ptr2' ./src/main.cpp:204: warning: unused variable 'Size' g++ -Wall -g -O2 -o bin/MUSTANG_v.3 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory `/build/buildd/mustang-3.0' cp mustang mustang.1 touch build-arch-stamp # get rid of the test?.pdf files, they are not used # in the example rm -f test/data/pdbs/test*.pdb /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_installexamples -s debian/runtest debian/test_zf-CCHH-small install -D -m755 bin/MUSTANG_v.3 debian/mustang/usr/bin/mustang /usr/bin/make -f debian/rules DH_OPTIONS=-s binary-common make[1]: Entering directory `/build/buildd/mustang-3.0' dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installman dh_strip dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: mustang dh_strip debug symbol extraction: packages to act on: mustang dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/mustang-dbgsym/DEBIAN/control, package mustang-dbgsym, directory ./debian/mustang-dbgsym pkgstriptranslations: mustang-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `/build/buildd/mustang-3.0/debian/mustang-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `mustang-dbgsym' in `../mustang-dbgsym_3.0-1ubuntu1_powerpc.ddeb'. dh_compress -X.pdb dh_fixperms dh_installdeb dh_shlibdeps dh_gencontrol dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends} dh_md5sums dh_builddeb pkgstriptranslations: processing control file: ./debian/mustang/DEBIAN/control, package mustang, directory ./debian/mustang pkgstriptranslations: mustang does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com warning, `debian/mustang/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `mustang' in `../mustang_3.0-1ubuntu1_powerpc.deb'. make[1]: Leaving directory `/build/buildd/mustang-3.0' dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../mustang_3.0-1ubuntu1_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20081118-1359 Publishing debug debs. chroot-autobuild/build/buildd/mustang_3.0-1ubuntu1_powerpc.deb: new debian package, version 2.0. size 88528 bytes: control archive= 1036 bytes. 1103 bytes, 22 lines control 415 bytes, 6 lines md5sums Package: mustang Version: 3.0-1ubuntu1 Architecture: powerpc Maintainer: Ubuntu MOTU Developers Installed-Size: 236 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.2.1) Suggests: mustang-testdata Section: science Priority: optional Homepage: http://www.cs.mu.oz.au/~arun/mustang/ Description: multiple structural alignment of proteins Mustang is an algorithm to align multiple protein structures. Given a set of PDB files, the program uses the spatial information in the Calpha atoms of the set to produce a sequence alignment. Based on a progressive pairwise heuristic the algorithm then proceeds through a number of refinement passes. Mustang reports the multiple sequence alignment and the corresponding superposition of structures. . When using this program please cite A.S. Konagurthu, J.C. Whisstock, P.J. Stuckey, A.M. Lesk, "MUSTANG: A multiple structural alignment algorithm." Proteins: Structure, Function, and Bioinformatics. 64(3):559-574. Original-Maintainer: Debian-Med Packaging Team chroot-autobuild/build/buildd/mustang_3.0-1ubuntu1_powerpc.deb: drwxr-xr-x root/root 0 2008-11-18 13:58:56 ./ drwxr-xr-x root/root 0 2008-11-18 13:58:52 ./usr/ drwxr-xr-x root/root 0 2008-11-18 13:58:53 ./usr/share/ drwxr-xr-x root/root 0 2008-11-18 13:58:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-11-18 13:58:55 ./usr/share/doc/mustang/ drwxr-xr-x root/root 0 2008-11-18 13:58:52 ./usr/share/doc/mustang/examples/ -rw-r--r-- root/root 551 2008-11-18 13:58:26 ./usr/share/doc/mustang/examples/runtest -rw-r--r-- root/root 1663 2008-11-18 13:58:26 ./usr/share/doc/mustang/examples/test_zf-CCHH-small -rw-r--r-- root/root 4059 2008-11-18 13:58:26 ./usr/share/doc/mustang/copyright -rw-r--r-- root/root 1268 2008-11-18 13:58:26 ./usr/share/doc/mustang/changelog.Debian.gz drwxr-xr-x root/root 0 2008-11-18 13:58:53 ./usr/share/man/ drwxr-xr-x root/root 0 2008-11-18 13:58:55 ./usr/share/man/man1/ -rw-r--r-- root/root 1853 2008-11-18 13:58:53 ./usr/share/man/man1/mustang.1.gz drwxr-xr-x root/root 0 2008-11-18 13:58:55 ./usr/bin/ -rwxr-xr-x root/root 173560 2008-11-18 13:58:55 ./usr/bin/mustang mustang_3.0-1ubuntu1_powerpc.changes: Format: 1.8 Date: Tue, 18 Nov 2008 13:48:49 +0100 Source: mustang Binary: mustang mustang-testdata Architecture: powerpc Version: 3.0-1ubuntu1 Distribution: jaunty Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Morten Kjeldgaard Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Launchpad-Bugs-Fixed: 296534 Changes: mustang (3.0-1ubuntu1) jaunty; urgency=low . * Fakesync of package from Debian (LP: #296534). Upstream changed tarball without bumping the version number, so we cannot do a normal sync from Debian. The tarball in this package is unchanged from -0ubuntu1. The deltas to the Debian tarball is introduced as a patch (debian/patches/fakesync.dpatch). debian/*: same as 3.0-1. debian/control: normal Ubuntu maintainer transmogrification. Checksums-Sha1: 483263c3eb506cac2f3dcfe84249554c1775886b 88528 mustang_3.0-1ubuntu1_powerpc.deb Checksums-Sha256: ffd456c6c584b222f10d25d32a68263ed94397df082624f4b9c2783f9248e2c3 88528 mustang_3.0-1ubuntu1_powerpc.deb Files: 10aaab5ab0366e1deed576733f7dbd88 88528 science optional mustang_3.0-1ubuntu1_powerpc.deb Original-Maintainer: Debian-Med Packaging Team ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mustang-3.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/srv/home/buildd/build-790570-1851248/chroot-autobuild --purge po-debconf intltool-debian groff-base libmagic1 gettext file dpatch bsdmainutils html2text gettext-base man-db debhelper (Reading database ... 11206 files and directories currently installed.) Removing dpatch ... Purging configuration files for dpatch ... Removing debhelper ... Removing po-debconf ... Removing intltool-debian ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing html2text ... Purging configuration files for html2text ... Removing gettext-base ... Removing man-db ... Purging configuration files for man-db ... Removing groff-base ... Purging configuration files for groff-base ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... ****************************************************************************** Finished at 20081118-1359 Build needed 00:00:34, 4572k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '790570-1851248'] Scanning for processes to kill in build 790570-1851248... Scanning for processes to kill in build /home/buildd/build-790570-1851248/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '790570-1851248'] Unmounting chroot for build 790570-1851248... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '790570-1851248'] Removing build 790570-1851248