RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6', '/home/buildd/filecache-default/0d41d6186070efeeaf989ff4911be7f96d5541ca'] Synching the system clock with the buildd NTP service... 20 Nov 18:10:48 ntpdate[5529]: adjust time server 10.122.37.1 offset 0.000100 sec Unpacking chroot for build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6'] Mounting chroot for build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6', 'deb http://ftpmaster.internal/ubuntu natty main universe'] Overriding sources.list in build-bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6', 'i386'] Updating debian chroot for build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6 Get:1 http://ftpmaster.internal natty Release.gpg [198 B] Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en Get:2 http://ftpmaster.internal natty Release [39.8 kB] Get:3 http://ftpmaster.internal natty/main i386 Packages [1515 kB] Get:4 http://ftpmaster.internal natty/universe i386 Packages [5999 kB] Fetched 7554 kB in 7s (1075 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: advancecomp optipng The following packages will be upgraded: apt apt-transport-https binutils bsdutils build-essential busybox-initramfs bzip2 cpio cpp cpp-4.4 cpp-4.5 dash debianutils dpkg dpkg-dev g++ g++-4.4 g++-4.5 gcc gcc-4.4 gcc-4.4-base gcc-4.5 gcc-4.5-base grep hostname initscripts libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libdb4.8 libdpkg-perl libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 libdrm2 libgcc1 libglib2.0-0 libgnutls26 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma2 libpam-modules libpam-runtime libpam0g libplymouth2 libstdc++6 libstdc++6-4.4-dev libstdc++6-4.5-dev libudev0 libuuid1 linux-libc-dev manpages manpages-dev mount netbase patch perl perl-base perl-modules pkgbinarymangler plymouth procps sed sensible-utils sysv-rc sysvinit-utils tar tzdata udev util-linux xz-utils 78 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 66.3 MB of archives. After this operation, 3539 kB disk space will be freed. WARNING: The following packages cannot be authenticated! sensible-utils debianutils dpkg dash grep libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 cpp-4.5 libstdc++6-4.5-dev g++-4.5 gcc-4.5 libstdc++6 binutils tzdata sysvinit-utils sysv-rc mount initscripts hostname perl-modules bzip2 libbz2-1.0 libdb4.8 perl perl-base sed tar util-linux bsdutils libpam-modules apt libuuid1 libblkid1 liblzma2 libpam-runtime libpam0g xz-utils netbase busybox-initramfs cpio libdrm2 libdrm-intel1 libdrm-nouveau1 libdrm-radeon1 libglib2.0-0 procps udev plymouth libplymouth2 libudev0 apt-transport-https cpp libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 manpages advancecomp gcc g++ dpkg-dev libdpkg-perl patch build-essential g++-4.4 libstdc++6-4.4-dev gcc-4.4 cpp-4.4 gcc-4.4-base manpages-dev optipng pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main sensible-utils all 0.0.5ubuntu1 [7296 B] Get:2 http://ftpmaster.internal/ubuntu/ natty/main debianutils i386 3.4.2 [44.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main dpkg i386 1.15.8.5ubuntu2 [1876 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main dash i386 0.5.5.1-7.2ubuntu1 [78.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main grep i386 2.6.3-3ubuntu1 [195 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libc-dev-bin i386 2.12.1-0ubuntu9 [217 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libc6-dev i386 2.12.1-0ubuntu9 [4910 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libc-bin i386 2.12.1-0ubuntu9 [738 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main libc6 i386 2.12.1-0ubuntu9 [3813 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev i386 2.6.37-5.14 [764 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main libgomp1 i386 4.5.1-10ubuntu1 [24.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5-base i386 4.5.1-10ubuntu1 [12.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libgcc1 i386 1:4.5.1-10ubuntu1 [51.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.5 i386 4.5.1-10ubuntu1 [4140 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.5-dev i386 4.5.1-10ubuntu1 [1526 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main g++-4.5 i386 4.5.1-10ubuntu1 [5491 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5 i386 4.5.1-10ubuntu1 [6856 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6 i386 4.5.1-10ubuntu1 [333 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main binutils i386 2.20.90.20101105-0ubuntu1 [2159 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main tzdata all 2010o-1 [672 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main sysvinit-utils i386 2.87dsf-4ubuntu19 [110 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main sysv-rc all 2.87dsf-4ubuntu19 [79.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main mount i386 2.17.2-3.3ubuntu1 [125 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main initscripts i386 2.87dsf-4ubuntu19 [73.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main hostname i386 3.05ubuntu1 [12.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main perl-modules all 5.10.1-16ubuntu1 [3440 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main bzip2 i386 1.0.5-6 [47.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libbz2-1.0 i386 1.0.5-6 [44.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libdb4.8 i386 4.8.30-2ubuntu1 [657 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main perl i386 5.10.1-16ubuntu1 [3748 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main perl-base i386 5.10.1-16ubuntu1 [926 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main sed i386 4.2.1-8 [135 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main tar i386 1.25-2 [202 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main util-linux i386 2.17.2-3.3ubuntu1 [476 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main bsdutils i386 1:2.17.2-3.3ubuntu1 [33.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main libpam-modules i386 1.1.1-4ubuntu2 [323 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main apt i386 0.8.9ubuntu2 [2023 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main libuuid1 i386 2.17.2-3.3ubuntu1 [14.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main libblkid1 i386 2.17.2-3.3ubuntu1 [62.1 kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/main liblzma2 i386 5.0.0-2 [85.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main libpam-runtime all 1.1.1-4ubuntu2 [85.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main libpam0g i386 1.1.1-4ubuntu2 [91.7 kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main xz-utils i386 5.0.0-2 [90.0 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main netbase all 4.43ubuntu1 [12.8 kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs i386 1:1.17.1-7ubuntu2 [146 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main cpio i386 2.11-5ubuntu1 [104 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main libdrm2 i386 2.4.22-2ubuntu1 [21.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main libdrm-intel1 i386 2.4.22-2ubuntu1 [21.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main libdrm-nouveau1 i386 2.4.22-2ubuntu1 [12.4 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main libdrm-radeon1 i386 2.4.22-2ubuntu1 [13.0 kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-0 i386 2.27.3-0ubuntu1 [1097 kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main procps i386 1:3.2.8-9ubuntu5 [210 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main udev i386 164-3 [328 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main plymouth i386 0.8.2-2ubuntu5.1 [113 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libplymouth2 i386 0.8.2-2ubuntu5.1 [89.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main libudev0 i386 164-3 [26.2 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main apt-transport-https i386 0.8.9ubuntu2 [20.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main cpp i386 4:4.5.1-1ubuntu3 [37.2 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main libgnutls26 i386 2.8.6-1ubuntu1 [364 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main libk5crypto3 i386 1.8.3+dfsg-2 [74.0 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main libgssapi-krb5-2 i386 1.8.3+dfsg-2 [97.7 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-3 i386 1.8.3+dfsg-2 [324 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main libkrb5support0 i386 1.8.3+dfsg-2 [19.4 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main libldap-2.4-2 i386 2.4.23-6ubuntu2 [160 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main manpages all 3.27-1ubuntu1 [571 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main advancecomp i386 1.15-1 [301 kB] Get:67 http://ftpmaster.internal/ubuntu/ natty/main gcc i386 4:4.5.1-1ubuntu3 [5068 B] Get:68 http://ftpmaster.internal/ubuntu/ natty/main g++ i386 4:4.5.1-1ubuntu3 [1446 B] Get:69 http://ftpmaster.internal/ubuntu/ natty/main dpkg-dev all 1.15.8.5ubuntu2 [451 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main libdpkg-perl all 1.15.8.5ubuntu2 [179 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main patch i386 2.6-3 [122 kB] Get:72 http://ftpmaster.internal/ubuntu/ natty/main build-essential i386 11.5ubuntu1 [5920 B] Get:73 http://ftpmaster.internal/ubuntu/ natty/main g++-4.4 i386 4.4.5-7ubuntu1 [4776 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.4-dev i386 4.4.5-7ubuntu1 [1419 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4 i386 4.4.5-7ubuntu1 [3003 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.4 i386 4.4.5-7ubuntu1 [3607 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4-base i386 4.4.5-7ubuntu1 [13.7 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main manpages-dev all 3.27-1ubuntu1 [1627 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main optipng i386 0.6.4-1 [84.8 kB] Get:80 http://ftpmaster.internal/ubuntu/ natty/main pkgbinarymangler all 85 [21.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.3 MB in 10s (6430 kB/s) (Reading database ... 14388 files and directories currently installed.) Preparing to replace sensible-utils 0.0.4ubuntu1 (using .../sensible-utils_0.0.5ubuntu1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.5ubuntu1) ... (Reading database ... 14389 files and directories currently installed.) Preparing to replace debianutils 3.4.1 (using .../debianutils_3.4.2_i386.deb) ... Unpacking replacement debianutils ... Setting up debianutils (3.4.2) ... (Reading database ... 14399 files and directories currently installed.) Preparing to replace dpkg 1.15.8.5ubuntu1 (using .../dpkg_1.15.8.5ubuntu2_i386.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.8.5ubuntu2) ... (Reading database ... 14398 files and directories currently installed.) Preparing to replace dash 0.5.5.1-7ubuntu1 (using .../dash_0.5.5.1-7.2ubuntu1_i386.deb) ... Unpacking replacement dash ... Setting up dash (0.5.5.1-7.2ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to replace grep 2.6.3-3 (using .../grep_2.6.3-3ubuntu1_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.6.3-3ubuntu1) ... (Reading database ... 14396 files and directories currently installed.) Preparing to replace libc-dev-bin 2.12.1-0ubuntu7 (using .../libc-dev-bin_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.12.1-0ubuntu7 (using .../libc6-dev_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.12.1-0ubuntu7 (using .../libc-bin_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.12.1-0ubuntu9) ... (Reading database ... 14396 files and directories currently installed.) Preparing to replace libc6 2.12.1-0ubuntu7 (using .../libc6_2.12.1-0ubuntu9_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.12.1-0ubuntu9) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14396 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.36-1.6 (using .../linux-libc-dev_2.6.37-5.14_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.5.1-9ubuntu1 (using .../libgomp1_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.5-base 4.5.1-9ubuntu1 (using .../gcc-4.5-base_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement gcc-4.5-base ... Setting up gcc-4.5-base (4.5.1-10ubuntu1) ... (Reading database ... 14397 files and directories currently installed.) Preparing to replace libgcc1 1:4.5.1-9ubuntu1 (using .../libgcc1_1%3a4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.5.1-10ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14397 files and directories currently installed.) Preparing to replace cpp-4.5 4.5.1-9ubuntu1 (using .../cpp-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement cpp-4.5 ... Preparing to replace libstdc++6-4.5-dev 4.5.1-9ubuntu1 (using .../libstdc++6-4.5-dev_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.5-dev ... Preparing to replace g++-4.5 4.5.1-9ubuntu1 (using .../g++-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement g++-4.5 ... Preparing to replace gcc-4.5 4.5.1-9ubuntu1 (using .../gcc-4.5_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement gcc-4.5 ... Preparing to replace libstdc++6 4.5.1-9ubuntu1 (using .../libstdc++6_4.5.1-10ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.5.1-10ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14395 files and directories currently installed.) Preparing to replace binutils 2.20.51.20101014-0ubuntu1 (using .../binutils_2.20.90.20101105-0ubuntu1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace tzdata 2010m-1 (using .../tzdata_2010o-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2010o-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Nov 20 18:11:45 UTC 2010. Universal Time is now: Sat Nov 20 18:11:45 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 14389 files and directories currently installed.) Preparing to replace sysvinit-utils 2.87dsf-4ubuntu18 (using .../sysvinit-utils_2.87dsf-4ubuntu19_i386.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.87dsf-4ubuntu18 (using .../sysv-rc_2.87dsf-4ubuntu19_all.deb) ... Unpacking replacement sysv-rc ... 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Setting up libbz2-1.0 (1.0.5-6) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14388 files and directories currently installed.) Preparing to replace libdb4.8 4.8.30-2 (using .../libdb4.8_4.8.30-2ubuntu1_i386.deb) ... Unpacking replacement libdb4.8 ... Setting up libdb4.8 (4.8.30-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14388 files and directories currently installed.) Preparing to replace perl 5.10.1-15ubuntu2 (using .../perl_5.10.1-16ubuntu1_i386.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.10.1-15ubuntu2 (using .../perl-base_5.10.1-16ubuntu1_i386.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.1-16ubuntu1) ... (Reading database ... 14386 files and directories currently installed.) Preparing to replace sed 4.2.1-7 (using .../archives/sed_4.2.1-8_i386.deb) ... Unpacking replacement sed ... 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Setting up libpam-modules (1.1.1-4ubuntu2) ... (Reading database ... 14381 files and directories currently installed.) Preparing to replace apt 0.8.7ubuntu1 (using .../apt_0.8.9ubuntu2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.8.9ubuntu2) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14382 files and directories currently installed.) Preparing to replace libuuid1 2.17.2-0ubuntu1 (using .../libuuid1_2.17.2-3.3ubuntu1_i386.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (2.17.2-3.3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14381 files and directories currently installed.) 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Setting up binutils (2.20.90.20101105-0ubuntu1) ... Setting up gcc-4.5 (4.5.1-10ubuntu1) ... Setting up sysvinit-utils (2.87dsf-4ubuntu19) ... Setting up sysv-rc (2.87dsf-4ubuntu19) ... Setting up initscripts (2.87dsf-4ubuntu19) ... Setting up bzip2 (1.0.5-6) ... Setting up netbase (4.43ubuntu1) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/init.d/networking ... Installing new version of config file /etc/services ... Setting up busybox-initramfs (1:1.17.1-7ubuntu2) ... Setting up cpio (2.11-5ubuntu1) ... Setting up libdrm2 (2.4.22-2ubuntu1) ... Setting up libdrm-intel1 (2.4.22-2ubuntu1) ... Setting up libdrm-nouveau1 (2.4.22-2ubuntu1) ... Setting up libdrm-radeon1 (2.4.22-2ubuntu1) ... Setting up libglib2.0-0 (2.27.3-0ubuntu1) ... Setting up procps (1:3.2.8-9ubuntu5) ... Installing new version of config file /etc/sysctl.d/README ... Setting up udev (164-3) ... Removing 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up libplymouth2 (0.8.2-2ubuntu5.1) ... Setting up plymouth (0.8.2-2ubuntu5.1) ... update-initramfs: deferring update (trigger activated) Setting up libudev0 (164-3) ... Setting up apt-transport-https (0.8.9ubuntu2) ... Setting up cpp (4:4.5.1-1ubuntu3) ... Setting up libgnutls26 (2.8.6-1ubuntu1) ... Setting up libkrb5support0 (1.8.3+dfsg-2) ... Setting up libk5crypto3 (1.8.3+dfsg-2) ... Setting up libkrb5-3 (1.8.3+dfsg-2) ... Setting up libgssapi-krb5-2 (1.8.3+dfsg-2) ... Setting up libldap-2.4-2 (2.4.23-6ubuntu2) ... Setting up manpages (3.27-1ubuntu1) ... Setting up advancecomp (1.15-1) ... Setting up gcc (4:4.5.1-1ubuntu3) ... Setting up patch (2.6-3) ... Setting up gcc-4.4-base (4.4.5-7ubuntu1) ... Setting up cpp-4.4 (4.4.5-7ubuntu1) ... Setting up gcc-4.4 (4.4.5-7ubuntu1) ... Setting up manpages-dev (3.27-1ubuntu1) ... Setting up optipng (0.6.4-1) ... Setting up pkgbinarymangler (85) ... Setting up perl-modules (5.10.1-16ubuntu1) ... Setting up g++-4.4 (4.4.5-7ubuntu1) ... Setting up g++-4.5 (4.5.1-10ubuntu1) ... Setting up libstdc++6-4.5-dev (4.5.1-10ubuntu1) ... Setting up perl (5.10.1-16ubuntu1) ... Setting up g++ (4:4.5.1-1ubuntu3) ... Setting up libdpkg-perl (1.15.8.5ubuntu2) ... Setting up dpkg-dev (1.15.8.5ubuntu2) ... Setting up build-essential (11.5ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.5-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6', 'i386', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'mmdb_1.22-0ubuntu1.dsc'] Initiating build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6 with 2 processor cores. Automatic build of mmdb_1.22-0ubuntu1 on palmer by sbuild/i386 1.170.5 Build started at 20101120-1813 ****************************************************************************** mmdb_1.22-0ubuntu1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cdbs, autotools-dev, libtool sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing cdbs: missing autotools-dev: missing libtool: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs autotools-dev libtool Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpipeline1 libsqlite3-0 libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.6 Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc groff libdata-dump-perl libtool-doc automaken gfortran fortran95-compiler gcj libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl python-doc python-tk python-profiler python2.6-doc python2.6-profiler Recommended packages: curl wget lynx libltdl-dev libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpipeline1 libsqlite3-0 libtool libunistring0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db mime-support po-debconf python python-scour python2.6 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 12.8 MB of archives. After this operation, 41.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file libexpat1 libsqlite3-0 mime-support python2.6 python bsdmainutils gettext-base groff-base liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libpipeline1 libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fdupes intltool python-scour cdbs libtool Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 i386 5.04-5ubuntu1 [232 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main file i386 5.04-5ubuntu1 [49.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 i386 2.0.1-7ubuntu1 [139 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main libsqlite3-0 i386 3.7.3-1 [375 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main mime-support all 3.51-1ubuntu1 [30.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main python2.6 i386 2.6.6-6ubuntu1 [2384 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main python all 2.6.6-5ubuntu1 [172 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils i386 8.0.11ubuntu1 [197 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main gettext-base i386 0.18.1.1-1ubuntu2 [77.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main groff-base i386 1.20.1-10 [1090 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main liburi-perl all 1.56-1 [90.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libhtml-parser-perl i386 3.68-1 [100 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tree-perl all 4.1-1 [206 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libpipeline1 i386 1.0.0-3 [23.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main libwww-perl all 5.837-1 [363 kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main libxml-parser-perl i386 2.36-1.1build3 [323 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libxml2 i386 2.7.8.dfsg-1 [605 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main man-db i386 2.5.9-2 [677 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main m4 i386 1.4.14-3 [276 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main autoconf all 2.67-2ubuntu1 [569 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main autotools-dev all 20100122.1 [70.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main automake all 1:1.11.1-1 [608 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main html2text i386 1.3.2a-15 [101 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 i386 0.9.3-3 [423 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main gettext i386 0.18.1.1-1ubuntu2 [1205 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16+nmu1 [212 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.0.0ubuntu1 [460 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main fdupes i386 1.50-PR2-3 [20.0 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main intltool all 0.41.1-1 [103 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main python-scour all 0.25+bzr194-0ubuntu3 [37.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main cdbs all 0.4.89ubuntu6 [961 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main libtool i386 2.2.6b-2ubuntu1 [524 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.8 MB in 2s (4913 kB/s) Selecting previously deselected package libmagic1. (Reading database ... 14427 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu1_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu1_i386.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu1_i386.deb) ... Selecting previously deselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.3-1_i386.deb) ... Selecting previously deselected package mime-support. Unpacking mime-support (from .../mime-support_3.51-1ubuntu1_all.deb) ... Selecting previously deselected package python2.6. Unpacking python2.6 (from .../python2.6_2.6.6-6ubuntu1_i386.deb) ... Selecting previously deselected package python. Unpacking python (from .../python_2.6.6-5ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.11ubuntu1_i386.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-1ubuntu2_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-10_i386.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.56-1_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.68-1_i386.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_4.1-1_all.deb) ... Selecting previously deselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.0.0-3_i386.deb) ... Selecting previously deselected package libwww-perl. 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Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously deselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-3_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-1ubuntu2_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_8.0.0ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-3_i386.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.41.1-1_all.deb) ... Selecting previously deselected package python-scour. Unpacking python-scour (from .../python-scour_0.25+bzr194-0ubuntu3_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.89ubuntu6_all.deb) ... Selecting previously deselected package libtool. Unpacking libtool (from .../libtool_2.2.6b-2ubuntu1_i386.deb) ... Setting up libmagic1 (5.04-5ubuntu1) ... Setting up file (5.04-5ubuntu1) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up libsqlite3-0 (3.7.3-1) ... Setting up mime-support (3.51-1ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode. Setting up python2.6 (2.6.6-6ubuntu1) ... Setting up python (2.6.6-5ubuntu1) ... Setting up bsdmainutils (8.0.11ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-1ubuntu2) ... Setting up groff-base (1.20.1-10) ... Setting up liburi-perl (1.56-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.68-1) ... Setting up libhtml-tree-perl (4.1-1) ... Setting up libpipeline1 (1.0.0-3) ... Setting up libwww-perl (5.837-1) ... Setting up libxml-parser-perl (2.36-1.1build3) ... Setting up libxml2 (2.7.8.dfsg-1) ... Setting up man-db (2.5.9-2) ... Building database of manual pages ... Setting up m4 (1.4.14-3) ... Setting up autoconf (2.67-2ubuntu1) ... Setting up autotools-dev (20100122.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-3) ... Setting up gettext (0.18.1.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.0.0ubuntu1) ... Setting up fdupes (1.50-PR2-3) ... Setting up intltool (0.41.1-1) ... Setting up python-scour (0.25+bzr194-0ubuntu3) ... Setting up cdbs (0.4.89ubuntu6) ... Setting up libtool (2.2.6b-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.12.1-0ubuntu9 make_3.81-8 dpkg-dev_1.15.8.5ubuntu2 gcc-4.5_4.5.1-10ubuntu1 g++-4.5_4.5.1-10ubuntu1 binutils_2.20.90.20101105-0ubuntu1 libstdc++6-4.5-dev_4.5.1-10ubuntu1 libstdc++6_4.5.1-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sat Nov 20 18:02:28 2010 UTC using DSA key ID 404825E7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mmdb_1.22-0ubuntu1.dsc dpkg-source: info: extracting mmdb in mmdb-1.22 dpkg-source: info: unpacking mmdb_1.22.orig.tar.gz dpkg-source: info: unpacking mmdb_1.22-0ubuntu1.debian.tar.gz dpkg-source: info: applying debian-changes-1.22-0ubuntu1 dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package mmdb dpkg-buildpackage: source version 1.22-0ubuntu1 dpkg-source --before-build mmdb-1.22 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/mmdb-1.22' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/mmdb-1.22' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi cd . && aclocal-1.11 if [ -e ./configure.ac ] || [ -e ./configure.in ]; then cd . && `which autoconf1.11 || which autoconf`; fi if [ -e ./Makefile.am ]; then cd . && automake-1.11 ; fi touch debian/stamp-autotools-files chmod a+x /build/buildd/mmdb-1.22/./configure mkdir -p . cd . && CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2 -D_REENTRANT" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/mmdb-1.22/./configure --build=i686-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/mmdb" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=. configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) none checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating examples/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/buildd/mmdb-1.22' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /build/buildd/mmdb-1.22/missing --run autoheader) rm -f stamp-h1 touch config.h.in /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/mmdb-1.22' Making all in src make[3]: Entering directory `/build/buildd/mmdb-1.22/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o bfgs_min.lo bfgs_min.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -fPIC -DPIC -o .libs/bfgs_min.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -o bfgs_min.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_bondmngr.lo mmdb_bondmngr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -fPIC -DPIC -o .libs/mmdb_bondmngr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -o mmdb_bondmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_manager.lo mmdb_manager.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -fPIC -DPIC -o .libs/mmdb_manager.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -o mmdb_manager.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_symop.lo mmdb_symop.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -fPIC -DPIC -o .libs/mmdb_symop.o mmdb_symop.cpp: In member function 'int CSymOp::GetOperation(int)': mmdb_symop.cpp:203:18: warning: comparison between signed and unsigned integer expressions mmdb_symop.cpp: In member function 'int CSymOps::SetGroup(const char*, const char*)': mmdb_symop.cpp:570:7: warning: 'symop_start' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -o mmdb_symop.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o file_.lo file_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -fPIC -DPIC -o .libs/file_.o file_.cpp: In member function 'Boolean CFile::seek(long int)': file_.cpp:582:19: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::FileEnd()': file_.cpp:599:31: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'word CFile::ReadLine(char*, word)': file_.cpp:642:20: warning: comparison between signed and unsigned integer expressions file_.cpp:649:20: warning: comparison between signed and unsigned integer expressions file_.cpp:654:16: warning: comparison between signed and unsigned integer expressions file_.cpp:657:20: warning: comparison between signed and unsigned integer expressions file_.cpp:662:20: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::ReadParameter(char*, realtype&, int)': file_.cpp:855:17: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::ReadParameters(char*, int&, realtype*, int, int)': file_.cpp:869:17: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'word CFile::ReadFile(void*, word)': file_.cpp:998:42: warning: comparison between signed and unsigned integer expressions libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -o file_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_chain.lo mmdb_chain.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -fPIC -DPIC -o .libs/mmdb_chain.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -o mmdb_chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mask.lo mmdb_mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -fPIC -DPIC -o .libs/mmdb_mask.o mmdb_mask.cpp: In member function 'char* CMask::Print(char*)': mmdb_mask.cpp:211:29: warning: comparison between signed and unsigned integer expressions libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -o mmdb_mask.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_tables.lo mmdb_tables.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -fPIC -DPIC -o .libs/mmdb_tables.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -o mmdb_tables.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o linalg_.lo linalg_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -fPIC -DPIC -o .libs/linalg_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -o linalg_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cifdefs.lo mmdb_cifdefs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -fPIC -DPIC -o .libs/mmdb_cifdefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -o mmdb_cifdefs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mmcif.lo mmdb_mmcif.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -fPIC -DPIC -o .libs/mmdb_mmcif.o mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetDataItem(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1843:21: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetLoop(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1946:25: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'int CMMCIFData::GetCategoryNo(const char*)': mmdb_mmcif.cpp:2259:11: warning: 'l' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -o mmdb_mmcif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_title.lo mmdb_title.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -fPIC -DPIC -o .libs/mmdb_title.o mmdb_title.cpp: In member function 'void CKeyWords::MakeCIF(CMMCIFData*)': mmdb_title.cpp:652:23: warning: comparison between signed and unsigned integer expressions mmdb_title.cpp: In member function 'int CBMApply::addMatrices(int&, CRemark*&, CTitleContainer&)': mmdb_title.cpp:1564:15: warning: unused variable 'nAdd' mmdb_title.cpp: In member function 'void CBiomolecule::Copy(CBiomolecule*)': mmdb_title.cpp:1744:8: warning: unused variable 'j' mmdb_title.cpp:1744:10: warning: unused variable 'k' mmdb_title.cpp: In member function 'int CMMDBTitle::ParseBiomolecules()': mmdb_title.cpp:2013:16: warning: unused variable 'p' mmdb_title.cpp:2013:18: warning: unused variable 'eptr' libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -o mmdb_title.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o machine_.lo machine_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -fPIC -DPIC -o .libs/machine_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -o machine_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_coormngr.lo mmdb_coormngr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -fPIC -DPIC -o .libs/mmdb_coormngr.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -o mmdb_coormngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_model.lo mmdb_model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -fPIC -DPIC -o .libs/mmdb_model.o mmdb_model.cpp: In member function 'void CHetCompounds::ConvertHETSYN(const char*)': mmdb_model.cpp:463:9: warning: unused variable 'c' mmdb_model.cpp: In member function 'void CHetCompound::HETNAM_PDBDump(CFile&)': mmdb_model.cpp:142:6: warning: 'c' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -o mmdb_model.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_uddata.lo mmdb_uddata.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -fPIC -DPIC -o .libs/mmdb_uddata.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -o mmdb_uddata.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o math_.lo math_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -fPIC -DPIC -o .libs/math_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -o math_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cryst.lo mmdb_cryst.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -fPIC -DPIC -o .libs/mmdb_cryst.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -o mmdb_cryst.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_rwbrook.lo mmdb_rwbrook.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -fPIC -DPIC -o .libs/mmdb_rwbrook.o mmdb_rwbrook.cpp: In function 'void mmdb_f_atom_(int*, int*, char*, char*, char*, int*, char*, char*, char*, char*, int*, char*, int*, int, int, int, int, int, int, int, int)': mmdb_rwbrook.cpp:1557:61: warning: suggest parentheses around '&&' within '||' libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -o mmdb_rwbrook.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_utils.lo mmdb_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -fPIC -DPIC -o .libs/mmdb_utils.o mmdb_utils.cpp: In member function 'virtual void CContString::GetCIF(CMMCIFData*, int&)': mmdb_utils.cpp:1012:23: warning: comparison between signed and unsigned integer expressions mmdb_utils.cpp: In function 'int ParseAtomPath(const char*, int&, char*, int&, char*, char*, char*, char*, char*, CAtomPath*)': mmdb_utils.cpp:1599:9: warning: 'wasRes' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -o mmdb_utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mattype_.lo mattype_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -fPIC -DPIC -o .libs/mattype_.o mattype_.cpp: In function 'char* BinValS(long int, char*)': mattype_.cpp:714:27: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void float2UniBin(realtype, byte*)': mattype_.cpp:1552:30: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2real(byte*, realtype&)': mattype_.cpp:1661:31: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2float(byte*, realtype&)': mattype_.cpp:1675:32: warning: comparison between signed and unsigned integer expressions mattype_.cpp:1677:49: warning: comparison between signed and unsigned integer expressions libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -o mattype_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_ficif.lo mmdb_ficif.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -fPIC -DPIC -o .libs/mmdb_ficif.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -o mmdb_ficif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase0.lo mmdb_sbase0.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -fPIC -DPIC -o .libs/mmdb_sbase0.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -o mmdb_sbase0.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_xml.lo mmdb_xml.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -fPIC -DPIC -o .libs/mmdb_xml.o mmdb_xml.cpp: In member function 'void CXMLObject::WriteObject(CFile&, int, int)': mmdb_xml.cpp:529:43: warning: comparison between signed and unsigned integer expressions mmdb_xml.cpp: In member function 'int CXMLObject::ReadObject(CFile&, char*, int&, int)': mmdb_xml.cpp:608:18: warning: 'k2' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -o mmdb_xml.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_align.lo mmdb_align.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -fPIC -DPIC -o .libs/mmdb_align.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -o mmdb_align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_file.lo mmdb_file.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -fPIC -DPIC -o .libs/mmdb_file.o mmdb_file.cpp: In member function 'int CMMDBFile::CheckInAtoms(int, CAtom**, int)': mmdb_file.cpp:1850:9: warning: 'A1' may be used uninitialized in this function mmdb_file.cpp: In member function 'word CMMDBFile::PDBCleanup(word)': mmdb_file.cpp:657:15: warning: 'k' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -o mmdb_file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase.lo mmdb_sbase.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -fPIC -DPIC -o .libs/mmdb_sbase.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -o mmdb_sbase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o random_n.lo random_n.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -fPIC -DPIC -o .libs/random_n.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -o random_n.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_atom.lo mmdb_atom.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -fPIC -DPIC -o .libs/mmdb_atom.o mmdb_atom.cpp: In member function 'void CAtom::StandardPDBOut(const char*, char*)': mmdb_atom.cpp:301:32: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -o mmdb_atom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_graph.lo mmdb_graph.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -fPIC -DPIC -o .libs/mmdb_graph.o mmdb_graph.cpp: In member function 'void CGraph::MakeSymmetryRelief(Boolean)': mmdb_graph.cpp:889:34: warning: 'ctype' may be used uninitialized in this function mmdb_graph.cpp:889:40: warning: 'otype' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -o mmdb_graph.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_selmngr.lo mmdb_selmngr.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -fPIC -DPIC -o .libs/mmdb_selmngr.o mmdb_selmngr.cpp: In function 'int TakeChainID(char*&, char*)': mmdb_selmngr.cpp:2816:52: warning: comparison between signed and unsigned integer expressions mmdb_selmngr.cpp: In function 'int TakeResID(char*&, int&, char*)': mmdb_selmngr.cpp:2843:63: warning: suggest parentheses around '&&' within '||' mmdb_selmngr.cpp: In member function 'void CMMDBSelManager::Select(int, int, int, const char*, int, const char*, int, const char*, const char*, const char*, const char*, const char*, const char*, const char*, realtype, realtype, realtype, realtype, realtype, realtype, int)': mmdb_selmngr.cpp:837:11: warning: 'modelSel' may be used uninitialized in this function libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -o mmdb_selmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o stream_.lo stream_.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -fPIC -DPIC -o .libs/stream_.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -o stream_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o hybrid_36.lo hybrid_36.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -fPIC -DPIC -o .libs/hybrid_36.o hybrid_36.cpp: In function 'const char* decode_pure(const int*, unsigned int, const char*, unsigned int, int*)': hybrid_36.cpp:141:27: warning: comparison between signed and unsigned integer expressions libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -o hybrid_36.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o libmmdb.la -rpath /usr/lib bfgs_min.lo mmdb_bondmngr.lo mmdb_manager.lo mmdb_symop.lo file_.lo mmdb_chain.lo mmdb_mask.lo mmdb_tables.lo linalg_.lo mmdb_cifdefs.lo mmdb_mmcif.lo mmdb_title.lo machine_.lo mmdb_coormngr.lo mmdb_model.lo mmdb_uddata.lo math_.lo mmdb_cryst.lo mmdb_rwbrook.lo mmdb_utils.lo mattype_.lo mmdb_ficif.lo mmdb_sbase0.lo mmdb_xml.lo mmdb_align.lo mmdb_file.lo mmdb_sbase.lo random_n.lo mmdb_atom.lo mmdb_graph.lo mmdb_selmngr.lo stream_.lo hybrid_36.lo libtool: link: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.5.2/../../../../lib/crti.o /usr/lib/gcc/i686-linux-gnu/4.5.2/crtbeginS.o .libs/bfgs_min.o .libs/mmdb_bondmngr.o .libs/mmdb_manager.o .libs/mmdb_symop.o .libs/file_.o .libs/mmdb_chain.o .libs/mmdb_mask.o .libs/mmdb_tables.o .libs/linalg_.o .libs/mmdb_cifdefs.o .libs/mmdb_mmcif.o .libs/mmdb_title.o .libs/machine_.o .libs/mmdb_coormngr.o .libs/mmdb_model.o .libs/mmdb_uddata.o .libs/math_.o .libs/mmdb_cryst.o .libs/mmdb_rwbrook.o .libs/mmdb_utils.o .libs/mattype_.o .libs/mmdb_ficif.o .libs/mmdb_sbase0.o .libs/mmdb_xml.o .libs/mmdb_align.o .libs/mmdb_file.o .libs/mmdb_sbase.o .libs/random_n.o .libs/mmdb_atom.o .libs/mmdb_graph.o .libs/mmdb_selmngr.o .libs/stream_.o .libs/hybrid_36.o -L/usr/lib/gcc/i686-linux-gnu/4.5.2 -L/usr/lib/gcc/i686-linux-gnu/4.5.2/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.5.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.5.2/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.5.2/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,libmmdb.so.0 -o .libs/libmmdb.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libmmdb.so.0" && ln -s "libmmdb.so.0.0.0" "libmmdb.so.0") libtool: link: (cd ".libs" && rm -f "libmmdb.so" && ln -s "libmmdb.so.0.0.0" "libmmdb.so") libtool: link: ar cru .libs/libmmdb.a bfgs_min.o mmdb_bondmngr.o mmdb_manager.o mmdb_symop.o file_.o mmdb_chain.o mmdb_mask.o mmdb_tables.o linalg_.o mmdb_cifdefs.o mmdb_mmcif.o mmdb_title.o machine_.o mmdb_coormngr.o mmdb_model.o mmdb_uddata.o math_.o mmdb_cryst.o mmdb_rwbrook.o mmdb_utils.o mattype_.o mmdb_ficif.o mmdb_sbase0.o mmdb_xml.o mmdb_align.o mmdb_file.o mmdb_sbase.o random_n.o mmdb_atom.o mmdb_graph.o mmdb_selmngr.o stream_.o hybrid_36.o libtool: link: ranlib .libs/libmmdb.a libtool: link: ( cd ".libs" && rm -f "libmmdb.la" && ln -s "../libmmdb.la" "libmmdb.la" ) make[3]: Leaving directory `/build/buildd/mmdb-1.22/src' Making all in examples make[3]: Entering directory `/build/buildd/mmdb-1.22/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I../src -g -O2 -g -Wall -O2 -D_REENTRANT -c -o coorfile.o coorfile.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o coorfile coorfile.o ../src/libmmdb.la libtool: link: g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o .libs/coorfile coorfile.o ../src/.libs/libmmdb.so g++ -DHAVE_CONFIG_H -I. -I.. -I../src -g -O2 -g -Wall -O2 -D_REENTRANT -c -o sel_exmp1.o sel_exmp1.cpp /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g 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-D_REENTRANT -Wl,-Bsymbolic-functions -o sse_exmp spseatoms.o ../src/libmmdb.la libtool: link: g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o .libs/sse_exmp spseatoms.o ../src/.libs/libmmdb.so /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o udatoms spseatoms.o ../src/libmmdb.la libtool: link: g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o .libs/udatoms spseatoms.o ../src/.libs/libmmdb.so /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o udd_exmp1 spseatoms.o ../src/libmmdb.la libtool: link: g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o .libs/udd_exmp1 spseatoms.o ../src/.libs/libmmdb.so /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o xml_exmp spseatoms.o ../src/libmmdb.la libtool: link: g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o .libs/xml_exmp spseatoms.o ../src/.libs/libmmdb.so make[3]: Leaving directory `/build/buildd/mmdb-1.22/examples' make[3]: Entering directory `/build/buildd/mmdb-1.22' cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make[3]: Leaving directory `/build/buildd/mmdb-1.22' make[2]: Leaving directory `/build/buildd/mmdb-1.22' make[1]: Leaving directory `/build/buildd/mmdb-1.22' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_clean -k dh_clean: dh_clean -k is deprecated; use dh_prep instead dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/mmdb-1.22/debian/tmp/ make[1]: Entering directory `/build/buildd/mmdb-1.22' Making install in src make[2]: Entering directory `/build/buildd/mmdb-1.22/src' make[3]: Entering directory `/build/buildd/mmdb-1.22/src' test -z "/usr/lib" || /bin/mkdir -p "/build/buildd/mmdb-1.22/debian/tmp//usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libmmdb.la '/build/buildd/mmdb-1.22/debian/tmp//usr/lib' libtool: install: /usr/bin/install -c .libs/libmmdb.so.0.0.0 /build/buildd/mmdb-1.22/debian/tmp//usr/lib/libmmdb.so.0.0.0 libtool: install: (cd /build/buildd/mmdb-1.22/debian/tmp//usr/lib && { ln -s -f libmmdb.so.0.0.0 libmmdb.so.0 || { rm -f libmmdb.so.0 && ln -s libmmdb.so.0.0.0 libmmdb.so.0; }; }) libtool: install: (cd /build/buildd/mmdb-1.22/debian/tmp//usr/lib && { ln -s -f libmmdb.so.0.0.0 libmmdb.so || { rm -f libmmdb.so && ln -s libmmdb.so.0.0.0 libmmdb.so; }; }) libtool: install: /usr/bin/install -c .libs/libmmdb.lai /build/buildd/mmdb-1.22/debian/tmp//usr/lib/libmmdb.la libtool: install: /usr/bin/install -c .libs/libmmdb.a /build/buildd/mmdb-1.22/debian/tmp//usr/lib/libmmdb.a libtool: install: chmod 644 /build/buildd/mmdb-1.22/debian/tmp//usr/lib/libmmdb.a libtool: install: ranlib /build/buildd/mmdb-1.22/debian/tmp//usr/lib/libmmdb.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/mmdb" || /bin/mkdir -p "/build/buildd/mmdb-1.22/debian/tmp//usr/include/mmdb" /usr/bin/install -c -m 644 bfgs_min.h mmdb_atom.h mmdb_ficif.h mmdb_rwbrook.h mmdb_uddata.h file_.h mmdb_bondmngr.h mmdb_file.h mmdb_sbase0.h mmdb_utils.h linalg_.h mmdb_chain.h mmdb_graph.h mmdb_sbase.h mmdb_xml.h machine_.h mmdb_cifdefs.h mmdb_manager.h mmdb_selmngr.h random_n.h math_.h mmdb_coormngr.h mmdb_mask.h mmdb_symop.h stream_.h mattype_.h mmdb_cryst.h mmdb_mmcif.h mmdb_tables.h mmdb_align.h mmdb_defs.h mmdb_model.h mmdb_title.h hybrid_36.h '/build/buildd/mmdb-1.22/debian/tmp//usr/include/mmdb' make[3]: Leaving directory `/build/buildd/mmdb-1.22/src' make[2]: Leaving directory `/build/buildd/mmdb-1.22/src' Making install in examples make[2]: Entering directory `/build/buildd/mmdb-1.22/examples' make[3]: Entering directory `/build/buildd/mmdb-1.22/examples' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/mmdb-1.22/examples' make[2]: Leaving directory `/build/buildd/mmdb-1.22/examples' make[2]: Entering directory `/build/buildd/mmdb-1.22' make[3]: Entering directory `/build/buildd/mmdb-1.22' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/mmdb-1.22' make[2]: Leaving directory `/build/buildd/mmdb-1.22' make[1]: Leaving directory `/build/buildd/mmdb-1.22' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/libmmdb-dev.substvars dh_installdirs -plibmmdb-dev Adding cdbs dependencies to debian/libmmdb0.substvars dh_installdirs -plibmmdb0 dh_installdocs -plibmmdb-dev ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb-dev dh_installman -plibmmdb-dev dh_installinfo -plibmmdb-dev dh_installmenu -plibmmdb-dev dh_installcron -plibmmdb-dev dh_installinit -plibmmdb-dev Duplicate specification "O=s" for option "O" dh_installdebconf -plibmmdb-dev dh_installemacsen -plibmmdb-dev dh_installcatalogs -plibmmdb-dev dh_installpam -plibmmdb-dev dh_installlogrotate -plibmmdb-dev dh_installlogcheck -plibmmdb-dev dh_installchangelogs -plibmmdb-dev dh_installudev -plibmmdb-dev dh_lintian -plibmmdb-dev dh_install -plibmmdb-dev dh_link -plibmmdb-dev dh_installmime -plibmmdb-dev dh_installdocs -plibmmdb0 ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb0 dh_installman -plibmmdb0 dh_installinfo -plibmmdb0 dh_installmenu -plibmmdb0 dh_installcron -plibmmdb0 dh_installinit -plibmmdb0 Duplicate specification "O=s" for option "O" dh_installdebconf -plibmmdb0 dh_installemacsen -plibmmdb0 dh_installcatalogs -plibmmdb0 dh_installpam -plibmmdb0 dh_installlogrotate -plibmmdb0 dh_installlogcheck -plibmmdb0 dh_installchangelogs -plibmmdb0 dh_installudev -plibmmdb0 dh_lintian -plibmmdb0 dh_install -plibmmdb0 dh_link -plibmmdb0 dh_installmime -plibmmdb0 dh_strip -plibmmdb-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb-dev dh_strip debug symbol extraction: ignored packages: libmmdb-dev is already stripped, ignoring dh_compress -plibmmdb-dev dh_fixperms -plibmmdb-dev dh_makeshlibs -plibmmdb-dev dh_strip -plibmmdb0 dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb0 dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `libmmdb0-dbgsym' in `../libmmdb0-dbgsym_1.22-0ubuntu1_i386.ddeb'. dh_compress -plibmmdb0 dh_fixperms -plibmmdb0 dh_makeshlibs -plibmmdb0 dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libmmdb0/DEBIAN/symbols doesn't match completely debian/libmmdb0.symbols --- debian/libmmdb0.symbols (libmmdb0_1.22-0ubuntu1_i386) +++ dpkg-gensymbolsrGxlFQ 2010-11-20 18:15:53.000000000 +0000 @@ -1000,6 +1000,7 @@ _ZN10CQuickSortC2Ev@Base 1.09 _ZN10CQuickSortD0Ev@Base 1.09 _ZN10CQuickSortD1Ev@Base 1.09 + _ZN10CQuickSortD2Ev@Base 1.22-0ubuntu1 _ZN10CSBTorsion13SBTorsionInitEv@Base 1.09 _ZN10CSBTorsion4CopyEPS_@Base 1.09 _ZN10CSBTorsion4readER5CFile@Base 1.09 @@ -1219,6 +1220,7 @@ _ZN12CAlignParamsC2Ev@Base 1.09 _ZN12CAlignParamsD0Ev@Base 1.09 _ZN12CAlignParamsD1Ev@Base 1.09 + _ZN12CAlignParamsD2Ev@Base 1.22-0ubuntu1 _ZN12CBiomolecule10FreeMemoryEv@Base 1.21 _ZN12CBiomolecule10addBMApplyEv@Base 1.21 _ZN12CBiomolecule15InitBiomoleculeEv@Base 1.21 @@ -1383,6 +1385,7 @@ _ZN12CSSContainer18MakeContainerClassEi@Base 1.09 _ZN12CSSContainerD0Ev@Base 1.09 _ZN12CSSContainerD1Ev@Base 1.09 + _ZN12CSSContainerD2Ev@Base 1.22-0ubuntu1 _ZN13CContactIndex10AddContactEiidi@Base 1.09 _ZN13CContactIndex8GetIndexERP8SContactRi@Base 1.09 _ZN13CContactIndexC1EP8SContactiii@Base 1.09 @@ -1425,17 +1428,20 @@ _ZN13CSortContacts7CompareEii@Base 1.09 _ZN13CSortContactsD0Ev@Base 1.09 _ZN13CSortContactsD1Ev@Base 1.09 + _ZN13CSortContactsD2Ev@Base 1.22-0ubuntu1 _ZN13CSortResidues4SortEPP8CResiduei@Base 1.09 _ZN13CSortResidues4SwapEii@Base 1.09 _ZN13CSortResidues7CompareEii@Base 1.09 _ZN13CSortResiduesD0Ev@Base 1.09 _ZN13CSortResiduesD1Ev@Base 1.09 + _ZN13CSortResiduesD2Ev@Base 1.22-0ubuntu1 _ZN13SDASelHandles13getNewHandlesEP12CMMDBManager@Base 1.09 _ZN13SDASelHandles14makeSelIndexesEP12CMMDBManager@Base 1.09 _ZN13SDASelHandles16deleteSelectionsEP12CMMDBManager@Base 1.09 _ZN14CLinkContainer18MakeContainerClassEi@Base 1.19 _ZN14CLinkContainerD0Ev@Base 1.19 _ZN14CLinkContainerD1Ev@Base 1.19 + _ZN14CLinkContainerD2Ev@Base 1.22-0ubuntu1 _ZN14CMMCIFCategory10ExpandTagsEi@Base 1.09 _ZN14CMMCIFCategory10FreeMemoryEv@Base 1.09 _ZN14CMMCIFCategory10WriteMMCIFER5CFile@Base 1.09 @@ -1472,6 +1478,7 @@ _ZN15CChainContainer8SetChainEP6CChain@Base 1.09 _ZN15CChainContainerD0Ev@Base 1.09 _ZN15CChainContainerD1Ev@Base 1.09 + _ZN15CChainContainerD2Ev@Base 1.22-0ubuntu1 _ZN15CClassContainer12PDBASCIIDumpER5CFile@Base 1.09 _ZN15CClassContainer13FreeContainerEv@Base 1.09 _ZN15CClassContainer17GetContainerClassEi@Base 1.09 @@ -1497,6 +1504,7 @@ _ZN15CContainerChainC2Ev@Base 1.09 _ZN15CContainerChainD0Ev@Base 1.09 _ZN15CContainerChainD1Ev@Base 1.09 + _ZN15CContainerChainD2Ev@Base 1.22-0ubuntu1 _ZN15CContainerClass10GetClassIDEv@Base 1.09 _ZN15CContainerClass12PDBASCIIDumpEPci@Base 1.09 _ZN15CContainerClass13PDBASCIIDump1ER5CFile@Base 1.09 @@ -1514,11 +1522,13 @@ _ZN15CContainerClassC2Ev@Base 1.09 _ZN15CContainerClassD0Ev@Base 1.09 _ZN15CContainerClassD1Ev@Base 1.09 + _ZN15CContainerClassD2Ev@Base 1.22-0ubuntu1 _ZN15CCrystContainer12AddMTRIXLineEPKc@Base 1.19 #MISSING: 1.19# _ZN15CCrystContainer12AddMTRIXLineEPc@Base 1.09 _ZN15CCrystContainer18MakeContainerClassEi@Base 1.09 _ZN15CCrystContainerD0Ev@Base 1.09 _ZN15CCrystContainerD1Ev@Base 1.09 + _ZN15CCrystContainerD2Ev@Base 1.22-0ubuntu1 _ZN15CMMDBSelManager10GetSelMaskEi@Base 1.09 _ZN15CMMDBSelManager10GetSelTypeEi@Base 1.09 _ZN15CMMDBSelManager10SelectAtomEP5CAtomiiRi@Base 1.09 @@ -1580,9 +1590,11 @@ _ZN15CTitleContainer18MakeContainerClassEi@Base 1.09 _ZN15CTitleContainerD0Ev@Base 1.09 _ZN15CTitleContainerD1Ev@Base 1.09 + _ZN15CTitleContainerD2Ev@Base 1.22-0ubuntu1 _ZN16CCisPepContainer18MakeContainerClassEi@Base 1.19 _ZN16CCisPepContainerD0Ev@Base 1.19 _ZN16CCisPepContainerD1Ev@Base 1.19 + _ZN16CCisPepContainerD2Ev@Base 1.22-0ubuntu1 _ZN16CMMDBBondManager11RemoveBondsEv@Base 1.09 _ZN16CMMDBBondManager4readER5CFile@Base 1.09 _ZN16CMMDBBondManager5writeER5CFile@Base 1.09 @@ -2781,6 +2793,7 @@ _ZN7CStream5writeER5CFile@Base 1.09 _ZN7CStreamD0Ev@Base 1.09 _ZN7CStreamD1Ev@Base 1.09 + _ZN7CStreamD2Ev@Base 1.22-0ubuntu1 _ZN7CSymOps10FreeMemoryEv@Base 1.09 _ZN7CSymOps10GetTMatrixERA4_A4_di@Base 1.09 _ZN7CSymOps10InitSymOpsEv@Base 1.09 @@ -3348,6 +3361,7 @@ _ZN9CProModel9GetSerNumEv@Base 1.09 _ZN9CProModelD0Ev@Base 1.09 _ZN9CProModelD1Ev@Base 1.09 + _ZN9CProModelD2Ev@Base 1.22-0ubuntu1 _ZN9SAtomStat10GetMaxSizeEv@Base 1.09 _ZN9SAtomStat4InitEv@Base 1.09 _ZN9SAtomStat6FinishEv@Base 1.09 dh_installdeb -plibmmdb-dev dh_perl -plibmmdb-dev dh_shlibdeps -plibmmdb-dev dh_installdeb -plibmmdb0 dh_perl -plibmmdb0 dh_shlibdeps -plibmmdb0 dh_gencontrol -plibmmdb-dev dh_scour -plibmmdb-dev # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb-dev/usr/share/doc ] || \ [ -h debian/libmmdb-dev/usr/share/doc/libmmdb-dev ] || \ [ ! -d debian/libmmdb-dev/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb-dev/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb-dev/usr/share/doc/libmmdb-dev; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb-dev/usr/share/doc/libmmdb-dev/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb-dev to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libmmdb0... symlinking ./README in libmmdb-dev to file in libmmdb0 symlinking ./AUTHORS in libmmdb-dev to file in libmmdb0 symlinking ./NEWS.gz in libmmdb-dev to file in libmmdb0 symlinking ./changelog.Debian.gz in libmmdb-dev to file in libmmdb0 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb-dev/usr/share/gnome/help ]; then \ cd debian/libmmdb-dev && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb-dev dh_md5sums -plibmmdb-dev dh_builddeb -plibmmdb-dev INFO: pkgstriptranslations version 85 pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com pkgstripfiles: processing control file: debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory debian/libmmdb-dev dpkg-deb: building package `libmmdb-dev' in `../libmmdb-dev_1.22-0ubuntu1_i386.deb'. dh_gencontrol -plibmmdb0 dh_scour -plibmmdb0 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb0/usr/share/doc ] || \ [ -h debian/libmmdb0/usr/share/doc/libmmdb0 ] || \ [ ! -d debian/libmmdb0/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb0/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb0/usr/share/doc/libmmdb0; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb0/usr/share/doc/libmmdb0/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb0 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb0/usr/share/gnome/help ]; then \ cd debian/libmmdb0 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb0 dh_md5sums -plibmmdb0 dh_builddeb -plibmmdb0 INFO: pkgstriptranslations version 85 pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libmmdb0/DEBIAN/control, package libmmdb0, directory ./debian/libmmdb0 pkgstriptranslations: libmmdb0 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com pkgstripfiles: processing control file: debian/libmmdb0/DEBIAN/control, package libmmdb0, directory debian/libmmdb0 dpkg-deb: building package `libmmdb0' in `../libmmdb0_1.22-0ubuntu1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../mmdb_1.22-0ubuntu1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build mmdb-1.22 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20101120-1816 Publishing debug debs. chroot-autobuild/build/buildd/libmmdb-dev_1.22-0ubuntu1_i386.deb: new debian package, version 2.0. size 532300 bytes: control archive= 1778 bytes. 986 bytes, 25 lines control 2344 bytes, 37 lines md5sums Package: libmmdb-dev Source: mmdb Version: 1.22-0ubuntu1 Architecture: i386 Maintainer: Morten Kjeldgaard Installed-Size: 1896 Depends: libmmdb0 (= 1.22-0ubuntu1) Section: libdevel Priority: optional Homepage: https://launchpad.net/mmdb/ Description: macromolecular coordinate library developer files MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains library and header files needed for program development. chroot-autobuild/build/buildd/libmmdb0_1.22-0ubuntu1_i386.deb: new debian package, version 2.0. size 413314 bytes: control archive= 20089 bytes. 1032 bytes, 25 lines control 397 bytes, 6 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 19 bytes, 1 lines shlibs 126097 bytes, 3251 lines symbols Package: libmmdb0 Source: mmdb Version: 1.22-0ubuntu1 Architecture: i386 Maintainer: Morten Kjeldgaard Installed-Size: 1124 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Section: libs Priority: optional Homepage: https://launchpad.net/mmdb/ Description: macromolecular coordinate library MMDB is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains the shared library components needed for programs that have been linked to the mmdb library. chroot-autobuild/build/buildd/libmmdb-dev_1.22-0ubuntu1_i386.deb: drwxr-xr-x root/root 0 2010-11-20 18:15 ./ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb-dev/ -rw-r--r-- root/root 2581 2010-11-20 18:02 ./usr/share/doc/libmmdb-dev/copyright drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/include/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/include/mmdb/ -rw-r--r-- root/root 9811 2010-11-20 18:15 ./usr/include/mmdb/bfgs_min.h -rw-r--r-- root/root 12100 2010-11-20 18:15 ./usr/include/mmdb/file_.h -rw-r--r-- root/root 508 2010-11-20 18:15 ./usr/include/mmdb/hybrid_36.h -rw-r--r-- root/root 8118 2010-11-20 18:15 ./usr/include/mmdb/linalg_.h -rw-r--r-- root/root 14099 2010-11-20 18:15 ./usr/include/mmdb/machine_.h -rw-r--r-- root/root 2339 2010-11-20 18:15 ./usr/include/mmdb/math_.h -rw-r--r-- root/root 23490 2010-11-20 18:15 ./usr/include/mmdb/mattype_.h -rw-r--r-- root/root 5309 2010-11-20 18:15 ./usr/include/mmdb/mmdb_align.h -rw-r--r-- root/root 27141 2010-11-20 18:15 ./usr/include/mmdb/mmdb_atom.h -rw-r--r-- root/root 2192 2010-11-20 18:15 ./usr/include/mmdb/mmdb_bondmngr.h -rw-r--r-- root/root 22047 2010-11-20 18:15 ./usr/include/mmdb/mmdb_chain.h -rw-r--r-- root/root 19046 2010-11-20 18:15 ./usr/include/mmdb/mmdb_cifdefs.h -rw-r--r-- root/root 41563 2010-11-20 18:15 ./usr/include/mmdb/mmdb_coormngr.h -rw-r--r-- root/root 16138 2010-11-20 18:15 ./usr/include/mmdb/mmdb_cryst.h -rw-r--r-- root/root 9219 2010-11-20 18:15 ./usr/include/mmdb/mmdb_defs.h -rw-r--r-- root/root 12495 2010-11-20 18:15 ./usr/include/mmdb/mmdb_ficif.h -rw-r--r-- root/root 23918 2010-11-20 18:15 ./usr/include/mmdb/mmdb_file.h -rw-r--r-- root/root 13124 2010-11-20 18:15 ./usr/include/mmdb/mmdb_graph.h -rw-r--r-- root/root 4114 2010-11-20 18:15 ./usr/include/mmdb/mmdb_manager.h -rw-r--r-- root/root 2786 2010-11-20 18:15 ./usr/include/mmdb/mmdb_mask.h -rw-r--r-- root/root 27333 2010-11-20 18:15 ./usr/include/mmdb/mmdb_mmcif.h -rw-r--r-- root/root 32772 2010-11-20 18:15 ./usr/include/mmdb/mmdb_model.h -rw-r--r-- root/root 69236 2010-11-20 18:15 ./usr/include/mmdb/mmdb_rwbrook.h -rw-r--r-- root/root 5763 2010-11-20 18:15 ./usr/include/mmdb/mmdb_sbase.h -rw-r--r-- root/root 29057 2010-11-20 18:15 ./usr/include/mmdb/mmdb_sbase0.h -rw-r--r-- root/root 27716 2010-11-20 18:15 ./usr/include/mmdb/mmdb_selmngr.h -rw-r--r-- root/root 4842 2010-11-20 18:15 ./usr/include/mmdb/mmdb_symop.h -rw-r--r-- root/root 4009 2010-11-20 18:15 ./usr/include/mmdb/mmdb_tables.h -rw-r--r-- root/root 17343 2010-11-20 18:15 ./usr/include/mmdb/mmdb_title.h -rw-r--r-- root/root 4149 2010-11-20 18:15 ./usr/include/mmdb/mmdb_uddata.h -rw-r--r-- root/root 24249 2010-11-20 18:15 ./usr/include/mmdb/mmdb_utils.h -rw-r--r-- root/root 4502 2010-11-20 18:15 ./usr/include/mmdb/mmdb_xml.h -rw-r--r-- root/root 2280 2010-11-20 18:15 ./usr/include/mmdb/random_n.h -rw-r--r-- root/root 7795 2010-11-20 18:15 ./usr/include/mmdb/stream_.h drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/lib/ -rw-r--r-- root/root 1264262 2010-11-20 18:15 ./usr/lib/libmmdb.a drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 212 2010-11-20 18:02 ./usr/lib/pkgconfig/mmdb.pc lrwxrwxrwx root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb-dev/README -> ../libmmdb0/README lrwxrwxrwx root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb-dev/AUTHORS -> ../libmmdb0/AUTHORS lrwxrwxrwx root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb-dev/NEWS.gz -> ../libmmdb0/NEWS.gz lrwxrwxrwx root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb-dev/changelog.Debian.gz -> ../libmmdb0/changelog.Debian.gz lrwxrwxrwx root/root 0 2010-11-20 18:15 ./usr/lib/libmmdb.so -> libmmdb.so.0.0.0 chroot-autobuild/build/buildd/libmmdb0_1.22-0ubuntu1_i386.deb: drwxr-xr-x root/root 0 2010-11-20 18:15 ./ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-11-20 18:15 ./usr/share/doc/libmmdb0/ -rw-r--r-- root/root 145 2010-11-19 05:49 ./usr/share/doc/libmmdb0/README -rw-r--r-- root/root 19 2010-11-19 05:49 ./usr/share/doc/libmmdb0/AUTHORS -rw-r--r-- root/root 2581 2010-11-20 18:02 ./usr/share/doc/libmmdb0/copyright -rw-r--r-- root/root 79 2010-11-19 05:49 ./usr/share/doc/libmmdb0/NEWS.gz -rw-r--r-- root/root 599 2010-11-20 18:02 ./usr/share/doc/libmmdb0/changelog.Debian.gz drwxr-xr-x root/root 0 2010-11-20 18:16 ./usr/lib/ -rw-r--r-- root/root 952324 2010-11-20 18:15 ./usr/lib/libmmdb.so.0.0.0 lrwxrwxrwx root/root 0 2010-11-20 18:16 ./usr/lib/libmmdb.so.0 -> libmmdb.so.0.0.0 mmdb_1.22-0ubuntu1_i386.changes: Format: 1.8 Date: Thu, 18 Nov 2010 14:22:24 +0100 Source: mmdb Binary: libmmdb-dev libmmdb0 Architecture: i386 Version: 1.22-0ubuntu1 Distribution: natty Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Morten Kjeldgaard Description: libmmdb-dev - macromolecular coordinate library developer files libmmdb0 - macromolecular coordinate library Changes: mmdb (1.22-0ubuntu1) natty; urgency=low . * New upstream version, incorporating patches from ccp4 version 6.1.13 * Transition source package to format 3.0 (quilt) Checksums-Sha1: 77372fb0ad068f35d916633ee06b980a6f9a5d61 532300 libmmdb-dev_1.22-0ubuntu1_i386.deb e5acd826818c2b90fe87fbe9ab57a46361ba0c35 413314 libmmdb0_1.22-0ubuntu1_i386.deb Checksums-Sha256: 3b4827b8c81d1ee3cb0865be1210466f99bd45e2130d931569ac819a9c8809c2 532300 libmmdb-dev_1.22-0ubuntu1_i386.deb 5feb050af294ac931bf538d64a31ceaf5de39afaae6de9440419dca85296220f 413314 libmmdb0_1.22-0ubuntu1_i386.deb Files: e760f2eff69a3b0bf667bf91af0e4c47 532300 libdevel optional libmmdb-dev_1.22-0ubuntu1_i386.deb df313e0e8f9ed66b1944925aeb15e635 413314 libs optional libmmdb0_1.22-0ubuntu1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mmdb-1.22 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base mime-support m4 gettext file libhtml-parser-perl intltool libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf python2.6 libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 automake python-scour man-db libtool intltool-debian cdbs html2text gettext-base debhelper libunistring0 python libmagic1 libpipeline1 libexpat1 libsqlite3-0 bsdmainutils fdupes autoconf (Reading database ... 16911 files and directories currently installed.) Removing libtool ... Removing cdbs ... Removing debhelper ... Removing fdupes ... Removing intltool ... Removing po-debconf ... Removing libxml-parser-perl ... Removing automake ... Removing python-scour ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing python ... Purging configuration files for python ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing groff-base ... Purging configuration files for groff-base ... Removing m4 ... Removing gettext ... Removing file ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing python2.6 ... Purging configuration files for python2.6 ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing mime-support ... Purging configuration files for mime-support ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20101120-1816 Build needed 00:02:12, 31500k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6'] Scanning for processes to kill in build /home/buildd/build-bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6'] Unmounting chroot for build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6'] Removing build bf94c18239fc3d8f8fcf3a1fae7dcbd9b8b64de6