RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1468953-3016566', '/home/buildd/filecache-default/69315e5c826cb52f9fad21f67604a64b5e7eb55c'] Synching the system clock with the buildd NTP service... 26 Jan 17:25:24 ntpdate[4989]: adjust time server 10.122.37.1 offset 0.000466 sec Unpacking chroot for build 1468953-3016566 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1468953-3016566'] Mounting chroot for build 1468953-3016566 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1468953-3016566', 'universe'] Attempting OGRE for universe in build-1468953-3016566 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1468953-3016566', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1468953-3016566 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1468953-3016566'] Updating debian chroot for build 1468953-3016566 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [57.2kB] Get:3 http://ftpmaster.internal lucid/main Packages [1395kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5417kB] Fetched 6870kB in 4s (1436kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpp-4.4 g++-4.4 gcc-4.4 gcc-4.4-base libgcc1 libgmp3c2 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libpng12-0 libssl0.9.8 libstdc++6 libstdc++6-4.4-dev linux-libc-dev openssl python2.6-minimal 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0MB of archives. After this operation, 16.4kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgomp1 gcc-4.4-base libstdc++6 cpp-4.4 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libgcc1 libgmp3c2 libssl0.9.8 python2.6-minimal libgssapi-krb5-2 libkrb5-3 libkrb5support0 libk5crypto3 openssl libpng12-0 linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main libgomp1 4.4.3-1ubuntu1 [25.5kB] Get:2 http://ftpmaster.internal lucid/main gcc-4.4-base 4.4.3-1ubuntu1 [117kB] Get:3 http://ftpmaster.internal lucid/main libstdc++6 4.4.3-1ubuntu1 [342kB] Get:4 http://ftpmaster.internal lucid/main cpp-4.4 4.4.3-1ubuntu1 [3900kB] Get:5 http://ftpmaster.internal lucid/main gcc-4.4 4.4.3-1ubuntu1 [2872kB] Get:6 http://ftpmaster.internal lucid/main g++-4.4 4.4.3-1ubuntu1 [5497kB] Get:7 http://ftpmaster.internal lucid/main libstdc++6-4.4-dev 4.4.3-1ubuntu1 [1526kB] Get:8 http://ftpmaster.internal lucid/main libgcc1 1:4.4.3-1ubuntu1 [44.9kB] Get:9 http://ftpmaster.internal lucid/main libgmp3c2 2:4.3.2+dfsg-1 [315kB] Get:10 http://ftpmaster.internal lucid/main libssl0.9.8 0.9.8k-7ubuntu5 [968kB] Get:11 http://ftpmaster.internal lucid/main python2.6-minimal 2.6.4-4ubuntu1 [1440kB] Get:12 http://ftpmaster.internal lucid/main libgssapi-krb5-2 1.8+dfsg~alpha1-4 [126kB] Get:13 http://ftpmaster.internal lucid/main libkrb5-3 1.8+dfsg~alpha1-4 [370kB] Get:14 http://ftpmaster.internal lucid/main libkrb5support0 1.8+dfsg~alpha1-4 [42.5kB] Get:15 http://ftpmaster.internal lucid/main libk5crypto3 1.8+dfsg~alpha1-4 [102kB] Get:16 http://ftpmaster.internal lucid/main openssl 0.9.8k-7ubuntu5 [406kB] Get:17 http://ftpmaster.internal lucid/main libpng12-0 1.2.41-1ubuntu1 [180kB] Get:18 http://ftpmaster.internal lucid/main linux-libc-dev 2.6.32-11.15 [742kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.0MB in 0s (26.7MB/s) (Reading database ... 12782 files and directories currently installed.) Preparing to replace libgomp1 4.4.2-9ubuntu4 (using .../libgomp1_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.4-base 4.4.2-9ubuntu4 (using .../gcc-4.4-base_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.3-1ubuntu1) ... (Reading database ... 12782 files and directories currently installed.) Preparing to replace libstdc++6 4.4.2-9ubuntu4 (using .../libstdc++6_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.3-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12782 files and directories currently installed.) Preparing to replace cpp-4.4 4.4.2-9ubuntu4 (using .../cpp-4.4_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4 4.4.2-9ubuntu4 (using .../gcc-4.4_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.2-9ubuntu4 (using .../g++-4.4_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.2-9ubuntu4 (using .../libstdc++6-4.4-dev_4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libgcc1 1:4.4.2-9ubuntu4 (using .../libgcc1_1%3a4.4.3-1ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.3-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12782 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.3.1+dfsg-3 (using .../libgmp3c2_2%3a4.3.2+dfsg-1_amd64.deb) ... Unpacking replacement libgmp3c2 ... Preparing to replace libssl0.9.8 0.9.8k-7ubuntu4 (using .../libssl0.9.8_0.9.8k-7ubuntu5_amd64.deb) ... Unpacking replacement libssl0.9.8 ... Setting up libssl0.9.8 (0.9.8k-7ubuntu5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12782 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.4-1ubuntu2 (using .../python2.6-minimal_2.6.4-4ubuntu1_amd64.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.4-4ubuntu1) ... Linking and byte-compiling packages for runtime python2.6... (Reading database ... 12782 files and directories currently installed.) Preparing to replace libgssapi-krb5-2 1.7+dfsg-4 (using .../libgssapi-krb5-2_1.8+dfsg~alpha1-4_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.7+dfsg-4 (using .../libkrb5-3_1.8+dfsg~alpha1-4_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.7+dfsg-4 (using .../libkrb5support0_1.8+dfsg~alpha1-4_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libk5crypto3 1.7+dfsg-4 (using .../libk5crypto3_1.8+dfsg~alpha1-4_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace openssl 0.9.8k-7ubuntu4 (using .../openssl_0.9.8k-7ubuntu5_amd64.deb) ... Unpacking replacement openssl ... Preparing to replace libpng12-0 1.2.41-1 (using .../libpng12-0_1.2.41-1ubuntu1_amd64.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace linux-libc-dev 2.6.32-10.14 (using .../linux-libc-dev_2.6.32-11.15_amd64.deb) ... Unpacking replacement linux-libc-dev ... Setting up libgomp1 (4.4.3-1ubuntu1) ... Setting up libgmp3c2 (2:4.3.2+dfsg-1) ... Setting up cpp-4.4 (4.4.3-1ubuntu1) ... Setting up gcc-4.4 (4.4.3-1ubuntu1) ... Setting up libkrb5support0 (1.8+dfsg~alpha1-4) ... Setting up libk5crypto3 (1.8+dfsg~alpha1-4) ... Setting up libkrb5-3 (1.8+dfsg~alpha1-4) ... Setting up libgssapi-krb5-2 (1.8+dfsg~alpha1-4) ... Setting up openssl (0.9.8k-7ubuntu5) ... Setting up libpng12-0 (1.2.41-1ubuntu1) ... Setting up linux-libc-dev (2.6.32-11.15) ... Setting up libstdc++6-4.4-dev (4.4.3-1ubuntu1) ... Setting up g++-4.4 (4.4.3-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1468953-3016566', 'lucid', '--nolog', '--batch', '--archive=ubuntu', '--dist=lucid', '--purpose=PRIMARY', '--comp=universe', 'mmdb_1.21-0ubuntu2.dsc'] Initiating build 1468953-3016566 with 2 processor cores. Automatic build of mmdb_1.21-0ubuntu2 on yellow by sbuild/amd64 1.170.5 Build started at 20100126-1725 ****************************************************************************** mmdb_1.21-0ubuntu2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cdbs, autotools-dev, quilt Checking for already installed source dependencies... debhelper: missing cdbs: missing autotools-dev: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs autotools-dev quilt Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpcre3 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db po-debconf Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl procmail graphviz Recommended packages: curl wget lynx cvs libglib2.0-data shared-mime-info libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 libpcre3 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db po-debconf quilt 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5MB of archives. After this operation, 37.9MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file libpcre3 libglib2.0-0 libxml2 bsdmainutils gettext-base groff-base libexpat1 liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl man-db m4 autoconf autotools-dev automake html2text libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs diffstat quilt Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main libmagic1 5.03-5 [392kB] Get:2 http://ftpmaster.internal lucid/main file 5.03-5 [47.9kB] Get:3 http://ftpmaster.internal lucid/main libpcre3 7.8-3 [216kB] Get:4 http://ftpmaster.internal lucid/main libglib2.0-0 2.23.2-2ubuntu2 [1065kB] Get:5 http://ftpmaster.internal lucid/main libxml2 2.7.6.dfsg-1ubuntu1 [871kB] Get:6 http://ftpmaster.internal lucid/main bsdmainutils 8.0.1ubuntu1 [199kB] Get:7 http://ftpmaster.internal lucid/main gettext-base 0.17-8ubuntu2 [78.4kB] Get:8 http://ftpmaster.internal lucid/main groff-base 1.20.1-6 [1129kB] Get:9 http://ftpmaster.internal lucid/main libexpat1 2.0.1-7ubuntu1 [138kB] Get:10 http://ftpmaster.internal lucid/main liburi-perl 1.50-1ubuntu1 [96.8kB] Get:11 http://ftpmaster.internal lucid/main libhtml-tagset-perl 3.20-2 [13.5kB] Get:12 http://ftpmaster.internal lucid/main libhtml-parser-perl 3.64-1 [114kB] Get:13 http://ftpmaster.internal lucid/main libhtml-tree-perl 3.23-1 [209kB] Get:14 http://ftpmaster.internal lucid/main libwww-perl 5.834-1 [401kB] Get:15 http://ftpmaster.internal lucid/main libxml-parser-perl 2.36-1.1build2 [324kB] Get:16 http://ftpmaster.internal lucid/main man-db 2.5.6-5 [1385kB] Get:17 http://ftpmaster.internal lucid/main m4 1.4.13-3 [286kB] Get:18 http://ftpmaster.internal lucid/main autoconf 2.65-3ubuntu1 [772kB] Get:19 http://ftpmaster.internal lucid/main autotools-dev 20090611.1 [64.1kB] Get:20 http://ftpmaster.internal lucid/main automake 1:1.11-1 [559kB] Get:21 http://ftpmaster.internal lucid/main html2text 1.3.2a-14 [104kB] Get:22 http://ftpmaster.internal lucid/main libcroco3 0.6.2-1 [101kB] Get:23 http://ftpmaster.internal lucid/main gettext 0.17-8ubuntu2 [1805kB] Get:24 http://ftpmaster.internal lucid/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:25 http://ftpmaster.internal lucid/main po-debconf 1.0.16 [224kB] Get:26 http://ftpmaster.internal lucid/main debhelper 7.4.10ubuntu1 [463kB] Get:27 http://ftpmaster.internal lucid/main fdupes 1.50-PR2-2 [20.1kB] Get:28 http://ftpmaster.internal lucid/main intltool 0.41.0-0ubuntu1 [52.5kB] Get:29 http://ftpmaster.internal lucid/main cdbs 0.4.62+nmu1ubuntu4 [1023kB] Get:30 http://ftpmaster.internal lucid/main diffstat 1.47-1 [24.7kB] Get:31 http://ftpmaster.internal lucid/main quilt 0.48-4ubuntu1 [318kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5MB in 0s (20.9MB/s) Selecting previously deselected package libmagic1. (Reading database ... 12782 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.03-5_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_5.03-5_amd64.deb) ... Selecting previously deselected package libpcre3. Unpacking libpcre3 (from .../libpcre3_7.8-3_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.23.2-2ubuntu2_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.6.dfsg-1ubuntu1_amd64.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.0.1ubuntu1_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-8ubuntu2_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.20.1-6_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu1_amd64.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.50-1ubuntu1_all.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.64-1_amd64.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.834-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build2_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.6-5_amd64.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.13-3_amd64.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.65-3ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20090611.1_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.11-1_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-8ubuntu2_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.4.10ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-2_amd64.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.41.0-0ubuntu1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.62+nmu1ubuntu4_all.deb) ... Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1_amd64.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../quilt_0.48-4ubuntu1_all.deb) ... Setting up libmagic1 (5.03-5) ... Setting up file (5.03-5) ... Setting up libpcre3 (7.8-3) ... Setting up libglib2.0-0 (2.23.2-2ubuntu2) ... Setting up libxml2 (2.7.6.dfsg-1ubuntu1) ... Setting up bsdmainutils (8.0.1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. Setting up gettext-base (0.17-8ubuntu2) ... Setting up groff-base (1.20.1-6) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up liburi-perl (1.50-1ubuntu1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.64-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.834-1) ... Setting up libxml-parser-perl (2.36-1.1build2) ... Setting up man-db (2.5.6-5) ... Building database of manual pages ... Setting up m4 (1.4.13-3) ... Setting up autoconf (2.65-3ubuntu1) ... Setting up autotools-dev (20090611.1) ... Setting up automake (1:1.11-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-14) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.10ubuntu1) ... Setting up fdupes (1.50-PR2-2) ... Setting up intltool (0.41.0-0ubuntu1) ... Setting up cdbs (0.4.62+nmu1ubuntu4) ... Setting up diffstat (1.47-1) ... Setting up quilt (0.48-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.11.1-0ubuntu1 make_3.81-7 dpkg-dev_1.15.4.1ubuntu1 g++-4.4_4.4.3-1ubuntu1 gcc-4.4_4.4.3-1ubuntu1 binutils_2.20-5ubuntu1 libstdc++6_4.4.3-1ubuntu1 libstdc++6-4.4-dev_4.4.3-1ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Tue Jan 26 17:19:24 2010 UTC using DSA key ID 404825E7 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mmdb_1.21-0ubuntu2.dsc dpkg-source: info: extracting mmdb in mmdb-1.21 dpkg-source: info: unpacking mmdb_1.21.orig.tar.gz dpkg-source: info: applying mmdb_1.21-0ubuntu2.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mmdb dpkg-buildpackage: source version 1.21-0ubuntu2 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/mmdb-1.21' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/mmdb-1.21' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-build for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/mmdb-1.21' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/mmdb-1.21' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/buildd/mmdb-1.21/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/mmdb-1.21' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/mmdb-1.21' cd . && QUILT_PATCHES=/build/buildd/mmdb-1.21/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 06-mmdb_coormngr.cpp patching file src/mmdb_coormngr.cpp Applying patch 05-linalg_.cpp patching file src/linalg_.cpp Applying patch 04-file_.cpp patching file src/file_.cpp Applying patch 03-mmdb_sbase0.cpp patching file src/mmdb_sbase0.cpp Applying patch 02-bfsg_min.cpp patching file src/bfgs_min.cpp Applying patch 01-mmdb_rwbrook.cpp patching file src/mmdb_rwbrook.cpp Applying patch ccp4-6.1.3.patch patching file src/bfgs_min.cpp patching file src/bfgs_min.h patching file src/file_.cpp patching file src/file_.h patching file src/linalg_.cpp patching file src/linalg_.h patching file src/machine_.cpp patching file src/machine_.h patching file src/math_.cpp patching file src/math_.h patching file src/mattype_.cpp patching file src/mattype_.h patching file src/mmdb_align.cpp patching file src/mmdb_align.h patching file src/mmdb_atom.cpp patching file src/mmdb_atom.h patching file src/mmdb_bondmngr.cpp patching file src/mmdb_bondmngr.h patching file src/mmdb_chain.cpp patching file src/mmdb_chain.h patching file src/mmdb_cifdefs.cpp patching file src/mmdb_cifdefs.h patching file src/mmdb_coormngr.cpp patching file src/mmdb_coormngr.h patching file src/mmdb_cryst.cpp patching file src/mmdb_cryst.h patching file src/mmdb_defs.h patching file src/mmdb_ficif.cpp patching file src/mmdb_ficif.h patching file src/mmdb_file.cpp patching file src/mmdb_file.h patching file src/mmdb_graph.cpp patching file src/mmdb_graph.h patching file src/mmdb_manager.cpp patching file src/mmdb_manager.h patching file src/mmdb_mask.cpp patching file src/mmdb_mask.h patching file src/mmdb_mmcif.cpp patching file src/mmdb_mmcif.h patching file src/mmdb_model.cpp patching file src/mmdb_model.h patching file src/mmdb_rwbrook.cpp patching file src/mmdb_rwbrook.h patching file src/mmdb_sbase.cpp patching file src/mmdb_sbase.h patching file src/mmdb_sbase0.cpp patching file src/mmdb_sbase0.h patching file src/mmdb_selmngr.cpp patching file src/mmdb_selmngr.h patching file src/mmdb_symop.cpp patching file src/mmdb_symop.h patching file src/mmdb_tables.cpp patching file src/mmdb_tables.h patching file src/mmdb_title.cpp patching file src/mmdb_title.h patching file src/mmdb_uddata.cpp patching file src/mmdb_uddata.h patching file src/mmdb_utils.cpp patching file src/mmdb_utils.h patching file src/mmdb_xml.cpp patching file src/mmdb_xml.h patching file src/random_n.cpp patching file src/random_n.h patching file src/stream_.cpp patching file src/stream_.h Now at patch ccp4-6.1.3.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/mmdb-1.21' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/buildd/mmdb-1.21' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/mmdb-1.21/./configure cd . && CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2 -D_REENTRANT" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/mmdb-1.21/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/mmdb" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=. configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 3458764513820540925 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules /usr/bin/make -C . make[1]: Entering directory `/build/buildd/mmdb-1.21' cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run aclocal-1.9 /build/buildd/mmdb-1.21/missing: line 46: aclocal-1.9: command not found WARNING: `aclocal-1.9' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run automake-1.9 --gnu /build/buildd/mmdb-1.21/missing: line 46: automake-1.9: command not found WARNING: `automake-1.9' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run autoconf /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash /build/buildd/mmdb-1.21/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=${prefix}/lib/mmdb --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=. build_alias=x86_64-linux-gnu CXXFLAGS=-g -O2 -g -Wall -O2 -D_REENTRANT LDFLAGS=-Wl,-Bsymbolic-functions CPPFLAGS= CFLAGS=-g -O2 -g -Wall -O2 FFLAGS=-g -O2 --no-create --no-recursion configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 3458764513820540925 checking command to parse /usr/bin/nm -B output from gcc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC checking if gcc PIC flag -fPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool configure: creating ./config.status configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules /bin/bash ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands make[1]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Entering directory `/build/buildd/mmdb-1.21' cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run autoheader rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/mmdb-1.21' Making all in src make[3]: Entering directory `/build/buildd/mmdb-1.21/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o bfgs_min.lo bfgs_min.cpp mkdir .libs g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -fPIC -DPIC -o .libs/bfgs_min.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -o bfgs_min.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_bondmngr.lo mmdb_bondmngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -fPIC -DPIC -o .libs/mmdb_bondmngr.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -o mmdb_bondmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_manager.lo mmdb_manager.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -fPIC -DPIC -o .libs/mmdb_manager.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -o mmdb_manager.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_symop.lo mmdb_symop.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -fPIC -DPIC -o .libs/mmdb_symop.o mmdb_symop.cpp: In member function 'int CSymOp::GetOperation(int)': mmdb_symop.cpp:203: warning: comparison between signed and unsigned integer expressions mmdb_symop.cpp: In member function 'int CSymOps::SetGroup(const char*, const char*)': mmdb_symop.cpp:570: warning: 'symop_start' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -o mmdb_symop.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o file_.lo file_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -fPIC -DPIC -o .libs/file_.o file_.cpp: In member function 'Boolean CFile::ReadParameter(char*, realtype&, int)': file_.cpp:855: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::ReadParameters(char*, int&, realtype*, int, int)': file_.cpp:869: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -o file_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_chain.lo mmdb_chain.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -fPIC -DPIC -o .libs/mmdb_chain.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -o mmdb_chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mask.lo mmdb_mask.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -fPIC -DPIC -o .libs/mmdb_mask.o mmdb_mask.cpp: In member function 'char* CMask::Print(char*)': mmdb_mask.cpp:211: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -o mmdb_mask.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_tables.lo mmdb_tables.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -fPIC -DPIC -o .libs/mmdb_tables.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -o mmdb_tables.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o linalg_.lo linalg_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -fPIC -DPIC -o .libs/linalg_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -o linalg_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cifdefs.lo mmdb_cifdefs.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -fPIC -DPIC -o .libs/mmdb_cifdefs.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -o mmdb_cifdefs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mmcif.lo mmdb_mmcif.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -fPIC -DPIC -o .libs/mmdb_mmcif.o mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetDataItem(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1843: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetLoop(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1946: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'int CMMCIFData::GetCategoryNo(const char*)': mmdb_mmcif.cpp:2259: warning: 'l' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -o mmdb_mmcif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_title.lo mmdb_title.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -fPIC -DPIC -o .libs/mmdb_title.o mmdb_title.cpp: In member function 'void CKeyWords::MakeCIF(CMMCIFData*)': mmdb_title.cpp:652: warning: comparison between signed and unsigned integer expressions mmdb_title.cpp: In member function 'int CBMApply::addMatrices(int&, CRemark*&, CTitleContainer&)': mmdb_title.cpp:1560: warning: unused variable 'nAdd' mmdb_title.cpp: In member function 'void CBiomolecule::Copy(CBiomolecule*)': mmdb_title.cpp:1740: warning: unused variable 'j' mmdb_title.cpp:1740: warning: unused variable 'k' mmdb_title.cpp: In member function 'int CMMDBTitle::ParseBiomolecules()': mmdb_title.cpp:2009: warning: unused variable 'p' mmdb_title.cpp:2009: warning: unused variable 'eptr' g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -o mmdb_title.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o machine_.lo machine_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -fPIC -DPIC -o .libs/machine_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -o machine_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_coormngr.lo mmdb_coormngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -fPIC -DPIC -o .libs/mmdb_coormngr.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -o mmdb_coormngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_model.lo mmdb_model.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -fPIC -DPIC -o .libs/mmdb_model.o mmdb_model.cpp: In member function 'void CHetCompounds::ConvertHETSYN(const char*)': mmdb_model.cpp:463: warning: unused variable 'c' mmdb_model.cpp: In member function 'void CHetCompound::HETNAM_PDBDump(CFile&)': mmdb_model.cpp:142: warning: 'c' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -o mmdb_model.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_uddata.lo mmdb_uddata.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -fPIC -DPIC -o .libs/mmdb_uddata.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -o mmdb_uddata.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o math_.lo math_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -fPIC -DPIC -o .libs/math_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -o math_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cryst.lo mmdb_cryst.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -fPIC -DPIC -o .libs/mmdb_cryst.o mmdb_cryst.cpp: In member function 'Boolean CMMDBCryst::Cryst2Orth(realtype*)': mmdb_cryst.cpp:1656: warning: array subscript is above array bounds mmdb_cryst.cpp:1657: warning: array subscript is above array bounds mmdb_cryst.cpp:1665: warning: array subscript is above array bounds mmdb_cryst.cpp:1665: warning: array subscript is above array bounds mmdb_cryst.cpp:1674: warning: array subscript is above array bounds mmdb_cryst.cpp:1674: warning: array subscript is above array bounds mmdb_cryst.cpp: In member function 'Boolean CMMDBCryst::Orth2Cryst(realtype*)': mmdb_cryst.cpp:1713: warning: array subscript is above array bounds mmdb_cryst.cpp:1714: warning: array subscript is above array bounds mmdb_cryst.cpp:1722: warning: array subscript is above array bounds mmdb_cryst.cpp:1722: warning: array subscript is above array bounds mmdb_cryst.cpp:1731: warning: array subscript is above array bounds mmdb_cryst.cpp:1731: warning: array subscript is above array bounds g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -o mmdb_cryst.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_rwbrook.lo mmdb_rwbrook.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -fPIC -DPIC -o .libs/mmdb_rwbrook.o mmdb_rwbrook.cpp: In function 'void mmdb_f_atom_(int*, int*, char*, char*, char*, int*, char*, char*, char*, char*, int*, char*, int*, int, int, int, int, int, int, int, int)': mmdb_rwbrook.cpp:1557: warning: suggest parentheses around '&&' within '||' g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -o mmdb_rwbrook.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_utils.lo mmdb_utils.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -fPIC -DPIC -o .libs/mmdb_utils.o mmdb_utils.cpp: In member function 'virtual void CContString::GetCIF(CMMCIFData*, int&)': mmdb_utils.cpp:1012: warning: comparison between signed and unsigned integer expressions mmdb_utils.cpp: In function 'int ParseAtomPath(const char*, int&, char*, int&, char*, char*, char*, char*, char*, CAtomPath*)': mmdb_utils.cpp:1599: warning: 'wasRes' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -o mmdb_utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mattype_.lo mattype_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -fPIC -DPIC -o .libs/mattype_.o mattype_.cpp: In function 'char* BinValS(long int, char*)': mattype_.cpp:714: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void float2UniBin(realtype, byte*)': mattype_.cpp:1552: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2real(byte*, realtype&)': mattype_.cpp:1661: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2float(byte*, realtype&)': mattype_.cpp:1675: warning: comparison between signed and unsigned integer expressions mattype_.cpp:1677: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -o mattype_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_ficif.lo mmdb_ficif.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -fPIC -DPIC -o .libs/mmdb_ficif.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -o mmdb_ficif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase0.lo mmdb_sbase0.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -fPIC -DPIC -o .libs/mmdb_sbase0.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -o mmdb_sbase0.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_xml.lo mmdb_xml.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -fPIC -DPIC -o .libs/mmdb_xml.o mmdb_xml.cpp: In member function 'void CXMLObject::WriteObject(CFile&, int, int)': mmdb_xml.cpp:529: warning: comparison between signed and unsigned integer expressions mmdb_xml.cpp: In member function 'int CXMLObject::ReadObject(CFile&, char*, int&, int)': mmdb_xml.cpp:608: warning: 'k2' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -o mmdb_xml.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_align.lo mmdb_align.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -fPIC -DPIC -o .libs/mmdb_align.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -o mmdb_align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_file.lo mmdb_file.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -fPIC -DPIC -o .libs/mmdb_file.o mmdb_file.cpp: In member function 'int CMMDBFile::CheckInAtoms(int, CAtom**, int)': mmdb_file.cpp:1850: warning: 'A1' may be used uninitialized in this function mmdb_file.cpp: In member function 'word CMMDBFile::PDBCleanup(word)': mmdb_file.cpp:657: warning: 'k' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -o mmdb_file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase.lo mmdb_sbase.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -fPIC -DPIC -o .libs/mmdb_sbase.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -o mmdb_sbase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o random_n.lo random_n.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -fPIC -DPIC -o .libs/random_n.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -o random_n.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_atom.lo mmdb_atom.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -fPIC -DPIC -o .libs/mmdb_atom.o mmdb_atom.cpp: In member function 'void CAtom::StandardPDBOut(const char*, char*)': mmdb_atom.cpp:301: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -o mmdb_atom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_graph.lo mmdb_graph.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -fPIC -DPIC -o .libs/mmdb_graph.o mmdb_graph.cpp: In member function 'void CGraph::MakeSymmetryRelief(Boolean)': mmdb_graph.cpp:889: warning: 'ctype' may be used uninitialized in this function mmdb_graph.cpp:889: warning: 'otype' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -o mmdb_graph.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_selmngr.lo mmdb_selmngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -fPIC -DPIC -o .libs/mmdb_selmngr.o mmdb_selmngr.cpp: In function 'int TakeChainID(char*&, char*)': mmdb_selmngr.cpp:2816: warning: comparison between signed and unsigned integer expressions mmdb_selmngr.cpp: In function 'int TakeResID(char*&, int&, char*)': mmdb_selmngr.cpp:2843: warning: suggest parentheses around '&&' within '||' mmdb_selmngr.cpp: In member function 'void CMMDBSelManager::Select(int, int, int, const char*, int, const char*, int, const char*, const char*, const char*, const char*, const char*, const char*, const char*, realtype, realtype, realtype, realtype, realtype, realtype, int)': mmdb_selmngr.cpp:837: warning: 'modelSel' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -o mmdb_selmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o stream_.lo stream_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -fPIC -DPIC -o .libs/stream_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -o stream_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o hybrid_36.lo hybrid_36.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -fPIC -DPIC -o .libs/hybrid_36.o hybrid_36.cpp: In function 'const char* decode_pure(const int*, unsigned int, const char*, unsigned int, int*)': hybrid_36.cpp:141: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -o hybrid_36.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o libmmdb.la -rpath /usr/lib bfgs_min.lo mmdb_bondmngr.lo mmdb_manager.lo mmdb_symop.lo file_.lo mmdb_chain.lo mmdb_mask.lo mmdb_tables.lo linalg_.lo mmdb_cifdefs.lo mmdb_mmcif.lo mmdb_title.lo machine_.lo mmdb_coormngr.lo mmdb_model.lo mmdb_uddata.lo math_.lo mmdb_cryst.lo mmdb_rwbrook.lo mmdb_utils.lo mattype_.lo mmdb_ficif.lo mmdb_sbase0.lo mmdb_xml.lo mmdb_align.lo mmdb_file.lo mmdb_sbase.lo random_n.lo mmdb_atom.lo mmdb_graph.lo mmdb_selmngr.lo stream_.lo hybrid_36.lo g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtbeginS.o .libs/bfgs_min.o .libs/mmdb_bondmngr.o .libs/mmdb_manager.o .libs/mmdb_symop.o .libs/file_.o .libs/mmdb_chain.o .libs/mmdb_mask.o .libs/mmdb_tables.o .libs/linalg_.o .libs/mmdb_cifdefs.o .libs/mmdb_mmcif.o .libs/mmdb_title.o .libs/machine_.o .libs/mmdb_coormngr.o .libs/mmdb_model.o .libs/mmdb_uddata.o .libs/math_.o .libs/mmdb_cryst.o .libs/mmdb_rwbrook.o .libs/mmdb_utils.o .libs/mattype_.o .libs/mmdb_ficif.o .libs/mmdb_sbase0.o .libs/mmdb_xml.o .libs/mmdb_align.o .libs/mmdb_file.o .libs/mmdb_sbase.o .libs/random_n.o .libs/mmdb_atom.o .libs/mmdb_graph.o .libs/mmdb_selmngr.o .libs/stream_.o .libs/hybrid_36.o -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,libmmdb.so.0 -o .libs/libmmdb.so.0.0.0 (cd .libs && rm -f libmmdb.so.0 && ln -s libmmdb.so.0.0.0 libmmdb.so.0) (cd .libs && rm -f libmmdb.so && ln -s libmmdb.so.0.0.0 libmmdb.so) ar cru .libs/libmmdb.a bfgs_min.o mmdb_bondmngr.o mmdb_manager.o mmdb_symop.o file_.o mmdb_chain.o mmdb_mask.o mmdb_tables.o linalg_.o mmdb_cifdefs.o mmdb_mmcif.o mmdb_title.o machine_.o mmdb_coormngr.o mmdb_model.o mmdb_uddata.o math_.o mmdb_cryst.o mmdb_rwbrook.o mmdb_utils.o mattype_.o mmdb_ficif.o mmdb_sbase0.o mmdb_xml.o mmdb_align.o mmdb_file.o mmdb_sbase.o random_n.o mmdb_atom.o mmdb_graph.o mmdb_selmngr.o stream_.o hybrid_36.o ranlib .libs/libmmdb.a creating libmmdb.la (cd .libs && rm -f libmmdb.la && ln -s ../libmmdb.la libmmdb.la) make[3]: Leaving directory `/build/buildd/mmdb-1.21/src' make[3]: Entering directory `/build/buildd/mmdb-1.21' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/mmdb-1.21' make[2]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Leaving directory `/build/buildd/mmdb-1.21' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_clean -k dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/mmdb-1.21/debian/tmp/ make[1]: Entering directory `/build/buildd/mmdb-1.21' Making install in src make[2]: Entering directory `/build/buildd/mmdb-1.21/src' make[3]: Entering directory `/build/buildd/mmdb-1.21/src' test -z "/usr/lib" || mkdir -p -- "/build/buildd/mmdb-1.21/debian/tmp//usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c 'libmmdb.la' '/build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.la' /usr/bin/install -c .libs/libmmdb.so.0.0.0 /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.so.0.0.0 (cd /build/buildd/mmdb-1.21/debian/tmp//usr/lib && rm -f libmmdb.so.0 && ln -s libmmdb.so.0.0.0 libmmdb.so.0) (cd /build/buildd/mmdb-1.21/debian/tmp//usr/lib && rm -f libmmdb.so && ln -s libmmdb.so.0.0.0 libmmdb.so) /usr/bin/install -c .libs/libmmdb.lai /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.la /usr/bin/install -c .libs/libmmdb.a /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a chmod 644 /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a ranlib /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/mmdb" || mkdir -p -- "/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb" /usr/bin/install -c -m 644 'bfgs_min.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/bfgs_min.h' /usr/bin/install -c -m 644 'mmdb_atom.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_atom.h' /usr/bin/install -c -m 644 'mmdb_ficif.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_ficif.h' /usr/bin/install -c -m 644 'mmdb_rwbrook.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_rwbrook.h' /usr/bin/install -c -m 644 'mmdb_uddata.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_uddata.h' /usr/bin/install -c -m 644 'file_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/file_.h' /usr/bin/install -c -m 644 'mmdb_bondmngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_bondmngr.h' /usr/bin/install -c -m 644 'mmdb_file.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_file.h' /usr/bin/install -c -m 644 'mmdb_sbase0.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_sbase0.h' /usr/bin/install -c -m 644 'mmdb_utils.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_utils.h' /usr/bin/install -c -m 644 'linalg_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/linalg_.h' /usr/bin/install -c -m 644 'mmdb_chain.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_chain.h' /usr/bin/install -c -m 644 'mmdb_graph.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_graph.h' /usr/bin/install -c -m 644 'mmdb_sbase.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_sbase.h' /usr/bin/install -c -m 644 'mmdb_xml.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_xml.h' /usr/bin/install -c -m 644 'machine_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/machine_.h' /usr/bin/install -c -m 644 'mmdb_cifdefs.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_cifdefs.h' /usr/bin/install -c -m 644 'mmdb_manager.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_manager.h' /usr/bin/install -c -m 644 'mmdb_selmngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_selmngr.h' /usr/bin/install -c -m 644 'random_n.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/random_n.h' /usr/bin/install -c -m 644 'math_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/math_.h' /usr/bin/install -c -m 644 'mmdb_coormngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_coormngr.h' /usr/bin/install -c -m 644 'mmdb_mask.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_mask.h' /usr/bin/install -c -m 644 'mmdb_symop.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_symop.h' /usr/bin/install -c -m 644 'stream_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/stream_.h' /usr/bin/install -c -m 644 'mattype_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mattype_.h' /usr/bin/install -c -m 644 'mmdb_cryst.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_cryst.h' /usr/bin/install -c -m 644 'mmdb_mmcif.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_mmcif.h' /usr/bin/install -c -m 644 'mmdb_tables.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_tables.h' /usr/bin/install -c -m 644 'mmdb_align.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_align.h' /usr/bin/install -c -m 644 'mmdb_defs.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_defs.h' /usr/bin/install -c -m 644 'mmdb_model.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_model.h' /usr/bin/install -c -m 644 'mmdb_title.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_title.h' /usr/bin/install -c -m 644 'hybrid_36.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/hybrid_36.h' make[3]: Leaving directory `/build/buildd/mmdb-1.21/src' make[2]: Leaving directory `/build/buildd/mmdb-1.21/src' make[2]: Entering directory `/build/buildd/mmdb-1.21' make[3]: Entering directory `/build/buildd/mmdb-1.21' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/mmdb-1.21' make[2]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Leaving directory `/build/buildd/mmdb-1.21' dh_installdirs -plibmmdb-dev dh_installdirs -plibmmdb0 dh_installdocs -plibmmdb-dev ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb-dev dh_installman -plibmmdb-dev dh_installinfo -plibmmdb-dev dh_installmenu -plibmmdb-dev dh_installcron -plibmmdb-dev dh_installinit -plibmmdb-dev dh_installdebconf -plibmmdb-dev dh_installemacsen -plibmmdb-dev dh_installcatalogs -plibmmdb-dev dh_installpam -plibmmdb-dev dh_installlogrotate -plibmmdb-dev dh_installlogcheck -plibmmdb-dev dh_installchangelogs -plibmmdb-dev dh_installudev -plibmmdb-dev dh_lintian -plibmmdb-dev dh_install -plibmmdb-dev dh_link -plibmmdb-dev dh_installmime -plibmmdb-dev dh_installdocs -plibmmdb0 ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb0 dh_installman -plibmmdb0 dh_installinfo -plibmmdb0 dh_installmenu -plibmmdb0 dh_installcron -plibmmdb0 dh_installinit -plibmmdb0 dh_installdebconf -plibmmdb0 dh_installemacsen -plibmmdb0 dh_installcatalogs -plibmmdb0 dh_installpam -plibmmdb0 dh_installlogrotate -plibmmdb0 dh_installlogcheck -plibmmdb0 dh_installchangelogs -plibmmdb0 dh_installudev -plibmmdb0 dh_lintian -plibmmdb0 dh_install -plibmmdb0 dh_link -plibmmdb0 dh_installmime -plibmmdb0 dh_strip -plibmmdb-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb-dev dh_strip debug symbol extraction: ignored packages: dh_compress -plibmmdb-dev dh_fixperms -plibmmdb-dev dh_makeshlibs -plibmmdb-dev dh_strip -plibmmdb0 dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb0 dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `libmmdb0-dbgsym' in `../libmmdb0-dbgsym_1.21-0ubuntu2_amd64.ddeb'. dh_compress -plibmmdb0 dh_fixperms -plibmmdb0 dh_makeshlibs -plibmmdb0 dh_installdeb -plibmmdb-dev dh_perl -plibmmdb-dev dh_shlibdeps -plibmmdb-dev dh_installdeb -plibmmdb0 dh_perl -plibmmdb0 dh_shlibdeps -plibmmdb0 dh_gencontrol -plibmmdb-dev # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb-dev/usr/share/doc ] || \ [ ! -d debian/libmmdb-dev/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb-dev/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb-dev/usr/share/doc/libmmdb-dev; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb-dev/usr/share/doc/libmmdb-dev/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb-dev to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libmmdb0... symlinking ./README in libmmdb-dev to file in libmmdb0 symlinking ./AUTHORS in libmmdb-dev to file in libmmdb0 symlinking ./NEWS.gz in libmmdb-dev to file in libmmdb0 symlinking ./changelog.Debian.gz in libmmdb-dev to file in libmmdb0 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb-dev/usr/share/gnome/help ]; then \ cd debian/libmmdb-dev && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb-dev dh_md5sums -plibmmdb-dev dh_builddeb -plibmmdb-dev pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com dpkg-deb: building package `libmmdb-dev' in `../libmmdb-dev_1.21-0ubuntu2_amd64.deb'. dh_gencontrol -plibmmdb0 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb0/usr/share/doc ] || \ [ ! -d debian/libmmdb0/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb0/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb0/usr/share/doc/libmmdb0; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb0/usr/share/doc/libmmdb0/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb0 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb0/usr/share/gnome/help ]; then \ cd debian/libmmdb0 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb0 dh_md5sums -plibmmdb0 dh_builddeb -plibmmdb0 pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libmmdb0/DEBIAN/control, package libmmdb0, directory ./debian/libmmdb0 pkgstriptranslations: libmmdb0 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com dpkg-deb: building package `libmmdb0' in `../libmmdb0_1.21-0ubuntu2_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../mmdb_1.21-0ubuntu2_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100126-1728 Publishing debug debs. chroot-autobuild/build/buildd/libmmdb-dev_1.21-0ubuntu2_amd64.deb: new debian package, version 2.0. size 573030 bytes: control archive= 1829 bytes. 1049 bytes, 26 lines control 2344 bytes, 37 lines md5sums Package: libmmdb-dev Source: mmdb Version: 1.21-0ubuntu2 Architecture: amd64 Maintainer: Morten Kjeldgaard Installed-Size: 2340 Depends: libmmdb0 (= 1.21-0ubuntu2) Section: libdevel Priority: optional Homepage: http://www.ebi.ac.uk/~keb/cldoc/downloads/ Description: macromolecular coordinate library developer files MMDB, written by Eugene Krissinel of the EBI, is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains library and header files needed for program development. chroot-autobuild/build/buildd/libmmdb0_1.21-0ubuntu2_amd64.deb: new debian package, version 2.0. size 430580 bytes: control archive= 20075 bytes. 1095 bytes, 26 lines control 397 bytes, 6 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 19 bytes, 1 lines shlibs 125498 bytes, 3237 lines symbols Package: libmmdb0 Source: mmdb Version: 1.21-0ubuntu2 Architecture: amd64 Maintainer: Morten Kjeldgaard Installed-Size: 1180 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Section: libs Priority: optional Homepage: http://www.ebi.ac.uk/~keb/cldoc/downloads/ Description: macromolecular coordinate library MMDB, written by Eugene Krissinel of the EBI, is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains the shared library components needed for programs that have been linked to the mmdb library. chroot-autobuild/build/buildd/libmmdb-dev_1.21-0ubuntu2_amd64.deb: drwxr-xr-x root/root 0 2010-01-26 17:27 ./ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/share/ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb-dev/ -rw-r--r-- root/root 2584 2010-01-26 17:26 ./usr/share/doc/libmmdb-dev/copyright drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/include/ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/include/mmdb/ -rw-r--r-- root/root 9811 2010-01-26 17:27 ./usr/include/mmdb/bfgs_min.h -rw-r--r-- root/root 12100 2010-01-26 17:27 ./usr/include/mmdb/file_.h -rw-r--r-- root/root 508 2010-01-26 17:27 ./usr/include/mmdb/hybrid_36.h -rw-r--r-- root/root 8118 2010-01-26 17:27 ./usr/include/mmdb/linalg_.h -rw-r--r-- root/root 14099 2010-01-26 17:27 ./usr/include/mmdb/machine_.h -rw-r--r-- root/root 2339 2010-01-26 17:27 ./usr/include/mmdb/math_.h -rw-r--r-- root/root 23490 2010-01-26 17:27 ./usr/include/mmdb/mattype_.h -rw-r--r-- root/root 5309 2010-01-26 17:27 ./usr/include/mmdb/mmdb_align.h -rw-r--r-- root/root 27141 2010-01-26 17:27 ./usr/include/mmdb/mmdb_atom.h -rw-r--r-- root/root 2192 2010-01-26 17:27 ./usr/include/mmdb/mmdb_bondmngr.h -rw-r--r-- root/root 22047 2010-01-26 17:27 ./usr/include/mmdb/mmdb_chain.h -rw-r--r-- root/root 19046 2010-01-26 17:27 ./usr/include/mmdb/mmdb_cifdefs.h -rw-r--r-- root/root 41563 2010-01-26 17:27 ./usr/include/mmdb/mmdb_coormngr.h -rw-r--r-- root/root 16138 2010-01-26 17:27 ./usr/include/mmdb/mmdb_cryst.h -rw-r--r-- root/root 9219 2010-01-26 17:27 ./usr/include/mmdb/mmdb_defs.h -rw-r--r-- root/root 12495 2010-01-26 17:27 ./usr/include/mmdb/mmdb_ficif.h -rw-r--r-- root/root 23918 2010-01-26 17:27 ./usr/include/mmdb/mmdb_file.h -rw-r--r-- root/root 13124 2010-01-26 17:27 ./usr/include/mmdb/mmdb_graph.h -rw-r--r-- root/root 4114 2010-01-26 17:27 ./usr/include/mmdb/mmdb_manager.h -rw-r--r-- root/root 2786 2010-01-26 17:27 ./usr/include/mmdb/mmdb_mask.h -rw-r--r-- root/root 27333 2010-01-26 17:27 ./usr/include/mmdb/mmdb_mmcif.h -rw-r--r-- root/root 32772 2010-01-26 17:27 ./usr/include/mmdb/mmdb_model.h -rw-r--r-- root/root 69236 2010-01-26 17:27 ./usr/include/mmdb/mmdb_rwbrook.h -rw-r--r-- root/root 5763 2010-01-26 17:27 ./usr/include/mmdb/mmdb_sbase.h -rw-r--r-- root/root 29057 2010-01-26 17:27 ./usr/include/mmdb/mmdb_sbase0.h -rw-r--r-- root/root 27716 2010-01-26 17:27 ./usr/include/mmdb/mmdb_selmngr.h -rw-r--r-- root/root 4842 2010-01-26 17:27 ./usr/include/mmdb/mmdb_symop.h -rw-r--r-- root/root 4009 2010-01-26 17:27 ./usr/include/mmdb/mmdb_tables.h -rw-r--r-- root/root 17343 2010-01-26 17:27 ./usr/include/mmdb/mmdb_title.h -rw-r--r-- root/root 4149 2010-01-26 17:27 ./usr/include/mmdb/mmdb_uddata.h -rw-r--r-- root/root 24249 2010-01-26 17:27 ./usr/include/mmdb/mmdb_utils.h -rw-r--r-- root/root 4502 2010-01-26 17:27 ./usr/include/mmdb/mmdb_xml.h -rw-r--r-- root/root 2280 2010-01-26 17:27 ./usr/include/mmdb/random_n.h -rw-r--r-- root/root 7795 2010-01-26 17:27 ./usr/include/mmdb/stream_.h drwxr-xr-x root/root 0 2010-01-26 17:28 ./usr/lib/ -rw-r--r-- root/root 1719576 2010-01-26 17:28 ./usr/lib/libmmdb.a drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 212 2010-01-26 17:26 ./usr/lib/pkgconfig/mmdb.pc lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb-dev/README -> ../libmmdb0/README lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb-dev/AUTHORS -> ../libmmdb0/AUTHORS lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb-dev/NEWS.gz -> ../libmmdb0/NEWS.gz lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb-dev/changelog.Debian.gz -> ../libmmdb0/changelog.Debian.gz lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/lib/libmmdb.so -> libmmdb.so.0.0.0 chroot-autobuild/build/buildd/libmmdb0_1.21-0ubuntu2_amd64.deb: drwxr-xr-x root/root 0 2010-01-26 17:27 ./ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/share/ drwxr-xr-x root/root 0 2010-01-26 17:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-01-26 17:28 ./usr/share/doc/libmmdb0/ -rw-r--r-- root/root 145 2009-05-05 14:07 ./usr/share/doc/libmmdb0/README -rw-r--r-- root/root 19 2009-05-01 14:28 ./usr/share/doc/libmmdb0/AUTHORS -rw-r--r-- root/root 2584 2010-01-26 17:26 ./usr/share/doc/libmmdb0/copyright -rw-r--r-- root/root 79 2009-05-06 14:48 ./usr/share/doc/libmmdb0/NEWS.gz -rw-r--r-- root/root 467 2010-01-26 17:26 ./usr/share/doc/libmmdb0/changelog.Debian.gz drwxr-xr-x root/root 0 2010-01-26 17:28 ./usr/lib/ -rw-r--r-- root/root 1010792 2010-01-26 17:28 ./usr/lib/libmmdb.so.0.0.0 lrwxrwxrwx root/root 0 2010-01-26 17:28 ./usr/lib/libmmdb.so.0 -> libmmdb.so.0.0.0 mmdb_1.21-0ubuntu2_amd64.changes: Format: 1.8 Date: Tue, 26 Jan 2010 18:02:32 +0100 Source: mmdb Binary: libmmdb-dev libmmdb0 Architecture: amd64 Version: 1.21-0ubuntu2 Distribution: lucid Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Morten Kjeldgaard Description: libmmdb-dev - macromolecular coordinate library developer files libmmdb0 - macromolecular coordinate library Changes: mmdb (1.21-0ubuntu2) lucid; urgency=low . * Incorporate patches from ccp4 version 6.1.3 Checksums-Sha1: e87a4a46dbca9305ef7704be9d3fc671a68809b2 573030 libmmdb-dev_1.21-0ubuntu2_amd64.deb 9ee781af9523d6d1709647e347a2213dbcb941b2 430580 libmmdb0_1.21-0ubuntu2_amd64.deb Checksums-Sha256: 4dd8c92b4fec714f830cbb91a5263aa1cc428ab26b1226d7f39428dd3313b6e6 573030 libmmdb-dev_1.21-0ubuntu2_amd64.deb 63546b95212af88ba7933f1524e303e600f4f32d7b4937adfa90a788c784714f 430580 libmmdb0_1.21-0ubuntu2_amd64.deb Files: 51da68269047115d2f17caf884bfa804 573030 libdevel optional libmmdb-dev_1.21-0ubuntu2_amd64.deb 017841d969e807dc80bef630745ea3b1 430580 libs optional libmmdb0_1.21-0ubuntu2_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mmdb-1.21 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge intltool-debian groff-base libglib2.0-0 m4 gettext file libhtml-parser-perl intltool cdbs libwww-perl liburi-perl html2text diffstat gettext-base debhelper libhtml-tree-perl autotools-dev po-debconf quilt libxml-parser-perl libcroco3 libmagic1 libhtml-tagset-perl libxml2 libexpat1 bsdmainutils fdupes automake libpcre3 man-db autoconf (Reading database ... 14667 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing po-debconf ... Removing quilt ... Purging configuration files for quilt ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... Removing html2text ... Purging configuration files for html2text ... Removing diffstat ... Removing libxml-parser-perl ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing automake ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing gettext-base ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libhtml-tagset-perl ... Removing libpcre3 ... Purging configuration files for libpcre3 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100126-1728 Build needed 00:01:59, 40852k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1468953-3016566'] Scanning for processes to kill in build /home/buildd/build-1468953-3016566/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1468953-3016566'] Unmounting chroot for build 1468953-3016566... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1468953-3016566'] Removing build 1468953-3016566