RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1079825-2345243', '/home/buildd/filecache-default/234208df3dcbf7db6d8404c8e8694dd327e30934'] Synching the system clock with the buildd NTP service... 16 Jun 12:11:52 ntpdate[17366]: adjust time server 10.211.37.1 offset -0.000032 sec Unpacking chroot for build 1079825-2345243 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1079825-2345243'] Mounting chroot for build 1079825-2345243 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1079825-2345243', 'universe'] Attempting OGRE for universe in build-1079825-2345243 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1079825-2345243', 'deb http://ftpmaster.internal/ubuntu karmic main universe'] Overriding sources.list in build-1079825-2345243 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1079825-2345243'] Updating debian chroot for build 1079825-2345243 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Get:3 http://ftpmaster.internal karmic/main Packages [1255kB] Get:4 http://ftpmaster.internal karmic/universe Packages [4946kB] Fetched 6276kB in 3s (1778kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt base-files bash-completion binutils bsdutils bzip2 coreutils cpio cpp-4.4 diff e2fslibs e2fsprogs fakeroot findutils g++-4.4 gcc-4.4 gcc-4.4-base libblkid1 libbz2-1.0 libc6 libc6-dev libcomerr2 libdb4.6 libgcc1 libgmp3c2 libgmpxx4ldbl libgomp1 libmpfr1ldbl libncurses5 libppl-c2 libppl7 libsepol1 libslang2 libss2 libstdc++6 libstdc++6-4.4-dev libuuid1 libvolume-id1 linux-libc-dev login lsb-base mktemp mount ncurses-base ncurses-bin passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler sed tzdata util-linux zlib1g 55 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/43.3MB of archives. After this operation, 2089kB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files coreutils diff e2fsprogs findutils login mktemp linux-libc-dev libc6-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libgmp3c2 libgmpxx4ldbl libmpfr1ldbl libppl-c2 libppl7 zlib1g binutils libc6 libsepol1 mount ncurses-bin perl-modules libdb4.6 perl perl-base sed lsb-base tzdata util-linux bsdutils libncurses5 ncurses-base apt libcomerr2 e2fslibs passwd libuuid1 libblkid1 libslang2 libss2 bzip2 libbz2-1.0 cpio bash-completion fakeroot libvolume-id1 pkg-create-dbgsym pkgbinarymangler Extracting templates from packages: 54% Extracting templates from packages: 100% Preconfiguring packages ... Authentication warning overridden. dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9274 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu1 (using .../base-files_5.0.0ubuntu2_lpia.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu2) ... Installing new version of config file /etc/dpkg/origins/ubuntu ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9274 files and directories currently installed.) Preparing to replace coreutils 7.2-1 (using .../coreutils_7.4-2_lpia.deb) ... Unpacking replacement coreutils ... Replacing files in old package mktemp ... Setting up coreutils (7.4-2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace diff 2.8.1-12ubuntu1 (using .../diff_2.8.1-13_lpia.deb) ... Unpacking replacement diff ... Setting up diff (2.8.1-13) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.5-1ubuntu1 (using .../e2fsprogs_1.41.5-1ubuntu3_lpia.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.5-1ubuntu3) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace findutils 4.4.0-2ubuntu4 (using .../findutils_4.4.2-1_lpia.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.2-1) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace login 1:4.1.1-6ubuntu6 (using .../login_1%3a4.1.4.1-1ubuntu1_lpia.deb) ... Unpacking replacement login ... Setting up login (1:4.1.4.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 9272 files and directories currently installed.) Preparing to replace mktemp 1.6-4 (using .../archives/mktemp_7.4-2_all.deb) ... Unpacking replacement mktemp ... Setting up mktemp (7.4-2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.30-1.2 (using .../linux-libc-dev_2.6.30-9.10_lpia.deb) ... Unpacking replacement linux-libc-dev ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libc6-dev 2.9-9ubuntu1 (using .../libc6-dev_2.9-9ubuntu2_lpia.deb) ... Unpacking replacement libc6-dev ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libgomp1 4.4.0-0ubuntu5 (using .../libgomp1_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement libgomp1 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace cpp-4.4 4.4.0-0ubuntu5 (using .../cpp-4.4_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement cpp-4.4 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace gcc-4.4-base 4.4.0-0ubuntu5 (using .../gcc-4.4-base_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.0-6ubuntu2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.0-0ubuntu5 (using .../libgcc1_1%3a4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.0-6ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.0-0ubuntu5 (using .../gcc-4.4_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement gcc-4.4 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace g++-4.4 4.4.0-0ubuntu5 (using .../g++-4.4_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement g++-4.4 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libstdc++6-4.4-dev 4.4.0-0ubuntu5 (using .../libstdc++6-4.4-dev_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement libstdc++6-4.4-dev ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libstdc++6 4.4.0-0ubuntu5 (using .../libstdc++6_4.4.0-6ubuntu2_lpia.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.0-6ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9274 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.2.4+dfsg-2ubuntu1 (using .../libgmp3c2_2%3a4.3.1+dfsg-1ubuntu2_lpia.deb) ... Unpacking replacement libgmp3c2 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libgmpxx4ldbl 2:4.2.4+dfsg-2ubuntu1 (using .../libgmpxx4ldbl_2%3a4.3.1+dfsg-1ubuntu2_lpia.deb) ... Unpacking replacement libgmpxx4ldbl ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libmpfr1ldbl 2.4.0-1ubuntu3 (using .../libmpfr1ldbl_2.4.1-1ubuntu1_lpia.deb) ... Unpacking replacement libmpfr1ldbl ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libppl-c2 0.10.1~pre13-1 (using .../libppl-c2_0.10.2-2_lpia.deb) ... Unpacking replacement libppl-c2 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libppl7 0.10.1~pre13-1 (using .../libppl7_0.10.2-2_lpia.deb) ... Unpacking replacement libppl7 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace zlib1g 1:1.2.3.3.dfsg-12ubuntu2 (using .../zlib1g_1%3a1.2.3.3.dfsg-13ubuntu1_lpia.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1:1.2.3.3.dfsg-13ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace binutils 2.19.51.20090423-0ubuntu2 (using .../binutils_2.19.51.20090515-0ubuntu1_lpia.deb) ... Unpacking replacement binutils ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libc6 2.9-9ubuntu1 (using .../libc6_2.9-9ubuntu2_lpia.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.9-9ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace libsepol1 2.0.30-2ubuntu1 (using .../libsepol1_2.0.32-1ubuntu1_lpia.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.32-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace mount 2.15~rc2-1ubuntu1 (using .../mount_2.15.1~rc1-1ubuntu2_lpia.deb) ... Unpacking replacement mount ... Setting up mount (2.15.1~rc1-1ubuntu2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090207-1ubuntu1 (using .../ncurses-bin_5.7+20090523-1ubuntu1_lpia.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090523-1ubuntu1) ... (Reading database ... 9272 files and directories currently installed.) Preparing to replace perl-modules 5.10.0-19ubuntu1 (using .../perl-modules_5.10.0-22ubuntu1_all.deb) ... Unpacking replacement perl-modules ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libdb4.6 4.6.21-12 (using .../libdb4.6_4.6.21-13ubuntu2_lpia.deb) ... Unpacking replacement libdb4.6 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace perl 5.10.0-19ubuntu1 (using .../perl_5.10.0-22ubuntu1_lpia.deb) ... Unpacking replacement perl ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace perl-base 5.10.0-19ubuntu1 (using .../perl-base_5.10.0-22ubuntu1_lpia.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.10.0-22ubuntu1) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9278 files and directories currently installed.) Preparing to replace sed 4.1.5-8 (using .../archives/sed_4.2-1_lpia.deb) ... Unpacking replacement sed ... Setting up sed (4.2-1) ... (Reading database ... 9276 files and directories currently installed.) Preparing to replace lsb-base 3.2-20ubuntu4 (using .../lsb-base_4.0-0ubuntu2_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu2) ... (Reading database ... 9276 files and directories currently installed.) Preparing to replace tzdata 2009g-1ubuntu1 (using .../tzdata_2009i-0ubuntu1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2009i-0ubuntu1) ... Current default timezone: 'Etc/UTC' Local time is now: Tue Jun 16 11:12:36 UTC 2009. Universal Time is now: Tue Jun 16 11:12:36 UTC 2009. Run 'dpkg-reconfigure tzdata' if you wish to change it. dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace util-linux 2.15~rc2-1ubuntu1 (using .../util-linux_2.15.1~rc1-1ubuntu2_lpia.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.15.1~rc1-1ubuntu2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace bsdutils 1:2.15~rc2-1ubuntu1 (using .../bsdutils_1%3a2.15.1~rc1-1ubuntu2_lpia.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15.1~rc1-1ubuntu2) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090207-1ubuntu1 (using .../libncurses5_5.7+20090523-1ubuntu1_lpia.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090523-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9276 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090207-1ubuntu1 (using .../ncurses-base_5.7+20090523-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090523-1ubuntu1) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace apt 0.7.20.2ubuntu6 (using .../apt_0.7.21ubuntu1_lpia.deb) ... Unpacking replacement apt ... Setting up apt (0.7.21ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace libcomerr2 1.41.5-1ubuntu1 (using .../libcomerr2_1.41.5-1ubuntu3_lpia.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace e2fslibs 1.41.5-1ubuntu1 (using .../e2fslibs_1.41.5-1ubuntu3_lpia.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9276 files and directories currently installed.) Preparing to replace passwd 1:4.1.1-6ubuntu6 (using .../passwd_1%3a4.1.4.1-1ubuntu1_lpia.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.4.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/newusers ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace libuuid1 1.41.5-1ubuntu1 (using .../libuuid1_1.41.5-1ubuntu3_lpia.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace libblkid1 2.15~rc2-1ubuntu1 (using .../libblkid1_2.15.1~rc1-1ubuntu2_lpia.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15.1~rc1-1ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9272 files and directories currently installed.) Preparing to replace libslang2 2.1.3-3ubuntu3 (using .../libslang2_2.1.4-3_lpia.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.1.4-3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9275 files and directories currently installed.) Preparing to replace libss2 1.41.5-1ubuntu1 (using .../libss2_1.41.5-1ubuntu3_lpia.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) (Reading database ... 9275 files and directories currently installed.) Preparing to replace bzip2 1.0.5-1ubuntu1 (using .../bzip2_1.0.5-2ubuntu1_lpia.deb) ... Unpacking replacement bzip2 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libbz2-1.0 1.0.5-1ubuntu1 (using .../libbz2-1.0_1.0.5-2ubuntu1_lpia.deb) ... Unpacking replacement libbz2-1.0 ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace cpio 2.9-15ubuntu1 (using .../cpio_2.9.90-3ubuntu1_lpia.deb) ... Unpacking replacement cpio ... Preparing to replace bash-completion 1:1.0-2 (using .../bash-completion_1%3a1.0-3_all.deb) ... Unpacking replacement bash-completion ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace fakeroot 1.12.1ubuntu1 (using .../fakeroot_1.12.2ubuntu1_lpia.deb) ... Unpacking replacement fakeroot ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Preparing to replace libvolume-id1 141-1 (using .../libvolume-id1_141-1.1_lpia.deb) ... Unpacking replacement libvolume-id1 ... Preparing to replace pkg-create-dbgsym 0.26 (using .../pkg-create-dbgsym_0.29_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 57 (using .../pkgbinarymangler_59_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up linux-libc-dev (2.6.30-9.10) ... Setting up libc6-dev (2.9-9ubuntu2) ... Setting up libgomp1 (4.4.0-6ubuntu2) ... Setting up libgmp3c2 (2:4.3.1+dfsg-1ubuntu2) ... Setting up libgmpxx4ldbl (2:4.3.1+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.4.1-1ubuntu1) ... Setting up libppl7 (0.10.2-2) ... Setting up libppl-c2 (0.10.2-2) ... Setting up cpp-4.4 (4.4.0-6ubuntu2) ... Setting up binutils (2.19.51.20090515-0ubuntu1) ... Setting up gcc-4.4 (4.4.0-6ubuntu2) ... Setting up libdb4.6 (4.6.21-13ubuntu2) ... Setting up libbz2-1.0 (1.0.5-2ubuntu1) ... Setting up bzip2 (1.0.5-2ubuntu1) ... Setting up cpio (2.9.90-3ubuntu1) ... Setting up bash-completion (1:1.0-3) ... Installing new version of config file /etc/bash_completion ... Setting up fakeroot (1.12.2ubuntu1) ... Setting up libvolume-id1 (141-1.1) ... Setting up pkg-create-dbgsym (0.29) ... Setting up pkgbinarymangler (59) ... Installing new version of config file /etc/pkgbinarymangler/maintainermangler.overrides ... Setting up perl-modules (5.10.0-22ubuntu1) ... Setting up libstdc++6-4.4-dev (4.4.0-6ubuntu2) ... Setting up g++-4.4 (4.4.0-6ubuntu2) ... Setting up perl (5.10.0-22ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1079825-2345243', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=karmic', '--comp=universe', 'mmdb_1.21-0ubuntu1.dsc'] Initiating build Automatic build of mmdb_1.21-0ubuntu1 on molybdenum by sbuild/lpia 1.170.5 Build started at 20090616-1213 ****************************************************************************** mmdb_1.21-0ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cdbs, autotools-dev, quilt Checking for already installed source dependencies... debhelper: missing cdbs: missing autotools-dev: missing quilt: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs autotools-dev quilt Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libvolume-id1 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: autoconf automake bsdmainutils diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db netbase po-debconf Suggested packages: autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make cvs gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl procmail graphviz Recommended packages: curl wget lynx libglib2.0-data shared-mime-info libmailtools-perl libhtml-format-perl xml-core ifupdown libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper diffstat fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db netbase po-debconf quilt 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/11.2MB of archives. After this operation, 34.2MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file netbase bsdmainutils gettext-base groff-base libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs diffstat quilt dpkg-preconfigure: unable to re-open stdin: Authentication warning overridden. dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libmagic1. (Reading database ... 9278 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_lpia.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.34ubuntu2_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22build1_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-4_lpia.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.37+dfsg-1ubuntu1_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.60-1_lpia.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.826-1_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build2_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.3.dfsg-1ubuntu1_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.5-2_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.13-1_lpia.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.63-3ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20090427.1_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.10.2-1ubuntu2_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.21.1-0ubuntu1_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_lpia.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_lpia.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.2.14ubuntu1_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-2_lpia.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.40.6-2_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.56ubuntu5_all.deb) ... dpkg - warning, overriding problem because --force enabled: package architecture (lpia) does not match system (i386) Selecting previously deselected package diffstat. Unpacking diffstat (from .../diffstat_1.47-1_lpia.deb) ... Selecting previously deselected package quilt. Unpacking quilt (from .../archives/quilt_0.46-7_all.deb) ... Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up netbase (4.34ubuntu2) ... Setting up bsdmainutils (6.1.10ubuntu4) ... Setting up gettext-base (0.17-6ubuntu2) ... Setting up groff-base (1.18.1.1-22build1) ... Setting up libexpat1 (2.0.1-4) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.37+dfsg-1ubuntu1) ... Setting up libhtml-parser-perl (3.60-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.826-1) ... Setting up libxml-parser-perl (2.36-1.1build2) ... Setting up libxml2 (2.7.3.dfsg-1ubuntu1) ... Setting up man-db (2.5.5-2) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up m4 (1.4.13-1) ... Setting up autoconf (2.63-3ubuntu1) ... Setting up autotools-dev (20090427.1) ... Setting up automake (1:1.10.2-1ubuntu2) ... Setting up html2text (1.3.2a-14) ... Setting up libglib2.0-0 (2.21.1-0ubuntu1) ... Setting up libcroco3 (0.6.1-2) ... Setting up gettext (0.17-6ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.2.14ubuntu1) ... Setting up fdupes (1.50-PR2-2) ... Setting up intltool (0.40.6-2) ... Setting up cdbs (0.4.56ubuntu5) ... Setting up diffstat (1.47-1) ... Setting up quilt (0.46-7) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-9ubuntu2 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-6ubuntu2 gcc-4.4_4.4.0-6ubuntu2 binutils_2.19.51.20090515-0ubuntu1 libstdc++6_4.4.0-6ubuntu2 libstdc++6-4.4-dev_4.4.0-6ubuntu2 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Tue Jun 16 12:07:52 2009 BST using DSA key ID 404825E7 gpg: Can't check signature: public key not found dpkg-source: extracting mmdb in mmdb-1.21 dpkg-source: unpacking mmdb_1.21.orig.tar.gz dpkg-source: applying /home/buildd/build-1079825-2345243/mmdb_1.21-0ubuntu1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package mmdb dpkg-buildpackage: source version 1.21-0ubuntu1 dpkg-buildpackage: host architecture lpia /usr/bin/fakeroot debian/rules clean test -x debian/rules for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/mmdb-1.21' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/mmdb-1.21' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-build rm -f debian/stamp-autotools-files /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/mmdb-1.21' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/mmdb-1.21' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/buildd/mmdb-1.21/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi No patch removed rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/mmdb-1.21' for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done make[1]: Leaving directory `/build/buildd/mmdb-1.21' cd . && QUILT_PATCHES=/build/buildd/mmdb-1.21/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch 06-mmdb_coormngr.cpp patching file src/mmdb_coormngr.cpp Applying patch 05-linalg_.cpp patching file src/linalg_.cpp Applying patch 04-file_.cpp patching file src/file_.cpp Applying patch 03-mmdb_sbase0.cpp patching file src/mmdb_sbase0.cpp Applying patch 02-bfsg_min.cpp patching file src/bfgs_min.cpp Applying patch 01-mmdb_rwbrook.cpp patching file src/mmdb_rwbrook.cpp Now at patch 01-mmdb_rwbrook.cpp touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/mmdb-1.21' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi make[1]: Leaving directory `/build/buildd/mmdb-1.21' if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/mmdb-1.21/./configure cd . && CC="cc" CXX="g++" CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2 -D_REENTRANT" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/mmdb-1.21/./configure --build=i686-linux-gnulp --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/mmdb" --disable-maintainer-mode --disable-dependency-tracking --srcdir=. configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... i686-pc-linux-gnulp checking host system type... i686-pc-linux-gnulp checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 805306365 checking command to parse /usr/bin/nm -B output from cc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode /usr/bin/make -C . make[1]: Entering directory `/build/buildd/mmdb-1.21' cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run aclocal-1.9 /build/buildd/mmdb-1.21/missing: line 46: aclocal-1.9: command not found WARNING: `aclocal-1.9' is missing on your system. You should only need it if you modified `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run automake-1.9 --gnu /build/buildd/mmdb-1.21/missing: line 46: automake-1.9: command not found WARNING: `automake-1.9' is missing on your system. You should only need it if you modified `Makefile.am', `acinclude.m4' or `configure.in'. You might want to install the `Automake' and `Perl' packages. Grab them from any GNU archive site. cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run autoconf /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash /build/buildd/mmdb-1.21/./configure --build=i686-linux-gnulp --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=${prefix}/lib/mmdb --disable-maintainer-mode --disable-dependency-tracking --srcdir=. build_alias=i686-linux-gnulp CXX=g++ CXXFLAGS=-g -O2 -g -Wall -O2 -D_REENTRANT LDFLAGS=-Wl,-Bsymbolic-functions CPPFLAGS= CC=cc CFLAGS=-g -O2 -g -Wall -O2 FFLAGS=-g -O2 --no-create --no-recursion configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking build system type... i686-pc-linux-gnulp checking host system type... i686-pc-linux-gnulp checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking how to run the C preprocessor... cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking how to run the C++ preprocessor... g++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no checking for g95... no checking for xlf95... no checking for f95... no checking for fort... no checking for ifort... no checking for ifc... no checking for efc... no checking for pgf95... no checking for lf95... no checking for ftn... no checking whether we are using the GNU Fortran 77 compiler... no checking whether accepts -g... no checking the maximum length of command line arguments... 805306365 checking command to parse /usr/bin/nm -B output from cc object... ok checking for objdir... .libs checking for ar... ar checking for ranlib... ranlib checking for strip... strip checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC checking if cc PIC flag -fPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes configure: creating libtool appending configuration tag "CXX" to libtool checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC checking if g++ PIC flag -fPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so (cached) (cached) checking how to hardcode library paths into programs... immediate appending configuration tag "F77" to libtool configure: creating ./config.status configure: WARNING: unrecognized options: --disable-maintainer-mode /bin/bash ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands make[1]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Entering directory `/build/buildd/mmdb-1.21' cd . && /bin/bash /build/buildd/mmdb-1.21/missing --run autoheader rm -f stamp-h1 touch config.h.in /usr/bin/make all-recursive make[2]: Entering directory `/build/buildd/mmdb-1.21' Making all in src make[3]: Entering directory `/build/buildd/mmdb-1.21/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o bfgs_min.lo bfgs_min.cpp mkdir .libs g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -fPIC -DPIC -o .libs/bfgs_min.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c bfgs_min.cpp -o bfgs_min.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_bondmngr.lo mmdb_bondmngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -fPIC -DPIC -o .libs/mmdb_bondmngr.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_bondmngr.cpp -o mmdb_bondmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_manager.lo mmdb_manager.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -fPIC -DPIC -o .libs/mmdb_manager.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_manager.cpp -o mmdb_manager.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_symop.lo mmdb_symop.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -fPIC -DPIC -o .libs/mmdb_symop.o mmdb_symop.cpp: In member function 'int CSymOp::GetOperation(int)': mmdb_symop.cpp:203: warning: comparison between signed and unsigned integer expressions mmdb_symop.cpp: In member function 'int CSymOps::SetGroup(const char*, const char*)': mmdb_symop.cpp:570: warning: 'symop_start' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_symop.cpp -o mmdb_symop.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o file_.lo file_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -fPIC -DPIC -o .libs/file_.o file_.cpp: In member function 'Boolean CFile::seek(long int)': file_.cpp:582: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::FileEnd()': file_.cpp:599: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'word CFile::ReadLine(char*, word)': file_.cpp:642: warning: comparison between signed and unsigned integer expressions file_.cpp:649: warning: comparison between signed and unsigned integer expressions file_.cpp:654: warning: comparison between signed and unsigned integer expressions file_.cpp:657: warning: comparison between signed and unsigned integer expressions file_.cpp:662: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::ReadParameter(char*, realtype&, int)': file_.cpp:855: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'Boolean CFile::ReadParameters(char*, int&, realtype*, int, int)': file_.cpp:869: warning: comparison between signed and unsigned integer expressions file_.cpp: In member function 'word CFile::ReadFile(void*, word)': file_.cpp:998: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c file_.cpp -o file_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_chain.lo mmdb_chain.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -fPIC -DPIC -o .libs/mmdb_chain.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_chain.cpp -o mmdb_chain.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mask.lo mmdb_mask.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -fPIC -DPIC -o .libs/mmdb_mask.o mmdb_mask.cpp: In member function 'char* CMask::Print(char*)': mmdb_mask.cpp:211: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mask.cpp -o mmdb_mask.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_tables.lo mmdb_tables.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -fPIC -DPIC -o .libs/mmdb_tables.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_tables.cpp -o mmdb_tables.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o linalg_.lo linalg_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -fPIC -DPIC -o .libs/linalg_.o linalg_.cpp: In function 'void SVD(int, int, int, realtype**, realtype**, realtype**, realtype*, realtype*, Boolean, Boolean, int&)': linalg_.cpp:578: warning: 'l' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c linalg_.cpp -o linalg_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cifdefs.lo mmdb_cifdefs.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -fPIC -DPIC -o .libs/mmdb_cifdefs.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cifdefs.cpp -o mmdb_cifdefs.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_mmcif.lo mmdb_mmcif.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -fPIC -DPIC -o .libs/mmdb_mmcif.o mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetDataItem(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1843: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'void CMMCIFData::GetLoop(CFile&, char*, char*&, char*&, int&, int&)': mmdb_mmcif.cpp:1946: warning: comparison between signed and unsigned integer expressions mmdb_mmcif.cpp: In member function 'int CMMCIFData::GetCategoryNo(const char*)': mmdb_mmcif.cpp:2259: warning: 'l' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_mmcif.cpp -o mmdb_mmcif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_title.lo mmdb_title.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -fPIC -DPIC -o .libs/mmdb_title.o mmdb_title.cpp: In member function 'void CKeyWords::MakeCIF(CMMCIFData*)': mmdb_title.cpp:652: warning: comparison between signed and unsigned integer expressions mmdb_title.cpp: In member function 'int CBMApply::addMatrices(int&, CRemark*&, CTitleContainer&)': mmdb_title.cpp:1560: warning: unused variable 'nAdd' mmdb_title.cpp: In member function 'void CBiomolecule::Copy(CBiomolecule*)': mmdb_title.cpp:1740: warning: unused variable 'j' mmdb_title.cpp:1740: warning: unused variable 'k' mmdb_title.cpp: In member function 'int CMMDBTitle::ParseBiomolecules()': mmdb_title.cpp:2009: warning: unused variable 'p' mmdb_title.cpp:2009: warning: unused variable 'eptr' g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_title.cpp -o mmdb_title.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o machine_.lo machine_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -fPIC -DPIC -o .libs/machine_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c machine_.cpp -o machine_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_coormngr.lo mmdb_coormngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -fPIC -DPIC -o .libs/mmdb_coormngr.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_coormngr.cpp -o mmdb_coormngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_model.lo mmdb_model.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -fPIC -DPIC -o .libs/mmdb_model.o mmdb_model.cpp: In member function 'void CHetCompounds::ConvertHETSYN(const char*)': mmdb_model.cpp:463: warning: unused variable 'c' mmdb_model.cpp: In member function 'void CHetCompound::FORMUL_PDBDump(CFile&)': mmdb_model.cpp:229: warning: 'c' may be used uninitialized in this function mmdb_model.cpp: In member function 'void CHetCompound::HETNAM_PDBDump(CFile&)': mmdb_model.cpp:142: warning: 'c' may be used uninitialized in this function mmdb_model.cpp: In member function 'void CHetCompounds::GetCIF(CMMCIFData*)': mmdb_model.cpp:612: warning: 'c' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_model.cpp -o mmdb_model.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_uddata.lo mmdb_uddata.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -fPIC -DPIC -o .libs/mmdb_uddata.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_uddata.cpp -o mmdb_uddata.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o math_.lo math_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -fPIC -DPIC -o .libs/math_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c math_.cpp -o math_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_cryst.lo mmdb_cryst.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -fPIC -DPIC -o .libs/mmdb_cryst.o mmdb_cryst.cpp: In member function 'Boolean CMMDBCryst::Cryst2Orth(realtype*)': mmdb_cryst.cpp:1665: warning: array subscript is above array bounds mmdb_cryst.cpp:1665: warning: array subscript is above array bounds mmdb_cryst.cpp:1674: warning: array subscript is above array bounds mmdb_cryst.cpp:1674: warning: array subscript is above array bounds mmdb_cryst.cpp: In member function 'Boolean CMMDBCryst::Orth2Cryst(realtype*)': mmdb_cryst.cpp:1722: warning: array subscript is above array bounds mmdb_cryst.cpp:1722: warning: array subscript is above array bounds mmdb_cryst.cpp:1731: warning: array subscript is above array bounds mmdb_cryst.cpp:1731: warning: array subscript is above array bounds g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_cryst.cpp -o mmdb_cryst.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_rwbrook.lo mmdb_rwbrook.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -fPIC -DPIC -o .libs/mmdb_rwbrook.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_rwbrook.cpp -o mmdb_rwbrook.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_utils.lo mmdb_utils.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -fPIC -DPIC -o .libs/mmdb_utils.o mmdb_utils.cpp: In member function 'virtual void CContString::GetCIF(CMMCIFData*, int&)': mmdb_utils.cpp:1012: warning: comparison between signed and unsigned integer expressions mmdb_utils.cpp: In function 'int ParseAtomPath(const char*, int&, char*, int&, char*, char*, char*, char*, char*, CAtomPath*)': mmdb_utils.cpp:1599: warning: 'wasRes' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_utils.cpp -o mmdb_utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mattype_.lo mattype_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -fPIC -DPIC -o .libs/mattype_.o mattype_.cpp: In function 'char* BinValS(long int, char*)': mattype_.cpp:714: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void float2UniBin(realtype, byte*)': mattype_.cpp:1552: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2real(byte*, realtype&)': mattype_.cpp:1661: warning: comparison between signed and unsigned integer expressions mattype_.cpp: In function 'void UniBin2float(byte*, realtype&)': mattype_.cpp:1675: warning: comparison between signed and unsigned integer expressions mattype_.cpp:1677: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mattype_.cpp -o mattype_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_ficif.lo mmdb_ficif.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -fPIC -DPIC -o .libs/mmdb_ficif.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_ficif.cpp -o mmdb_ficif.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase0.lo mmdb_sbase0.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -fPIC -DPIC -o .libs/mmdb_sbase0.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase0.cpp -o mmdb_sbase0.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_xml.lo mmdb_xml.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -fPIC -DPIC -o .libs/mmdb_xml.o mmdb_xml.cpp: In member function 'void CXMLObject::WriteObject(CFile&, int, int)': mmdb_xml.cpp:529: warning: comparison between signed and unsigned integer expressions mmdb_xml.cpp: In member function 'int CXMLObject::ReadObject(CFile&, char*, int&, int)': mmdb_xml.cpp:608: warning: 'k2' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_xml.cpp -o mmdb_xml.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_align.lo mmdb_align.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -fPIC -DPIC -o .libs/mmdb_align.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_align.cpp -o mmdb_align.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_file.lo mmdb_file.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -fPIC -DPIC -o .libs/mmdb_file.o mmdb_file.cpp: In member function 'int CMMDBFile::CheckInAtoms(int, CAtom**, int)': mmdb_file.cpp:1850: warning: 'A1' may be used uninitialized in this function mmdb_file.cpp: In member function 'word CMMDBFile::PDBCleanup(word)': mmdb_file.cpp:657: warning: 'k' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_file.cpp -o mmdb_file.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_sbase.lo mmdb_sbase.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -fPIC -DPIC -o .libs/mmdb_sbase.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_sbase.cpp -o mmdb_sbase.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o random_n.lo random_n.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -fPIC -DPIC -o .libs/random_n.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c random_n.cpp -o random_n.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_atom.lo mmdb_atom.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -fPIC -DPIC -o .libs/mmdb_atom.o mmdb_atom.cpp: In member function 'void CAtom::StandardPDBOut(const char*, char*)': mmdb_atom.cpp:301: warning: comparisons like 'X<=Y<=Z' do not have their mathematical meaning g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_atom.cpp -o mmdb_atom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_graph.lo mmdb_graph.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -fPIC -DPIC -o .libs/mmdb_graph.o mmdb_graph.cpp: In member function 'void CGraph::MakeSymmetryRelief(Boolean)': mmdb_graph.cpp:889: warning: 'ctype' may be used uninitialized in this function mmdb_graph.cpp:889: warning: 'otype' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_graph.cpp -o mmdb_graph.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o mmdb_selmngr.lo mmdb_selmngr.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -fPIC -DPIC -o .libs/mmdb_selmngr.o mmdb_selmngr.cpp: In function 'int TakeChainID(char*&, char*)': mmdb_selmngr.cpp:2816: warning: comparison between signed and unsigned integer expressions mmdb_selmngr.cpp: In function 'int TakeResID(char*&, int&, char*)': mmdb_selmngr.cpp:2843: warning: suggest parentheses around '&&' within '||' mmdb_selmngr.cpp: In member function 'void CMMDBSelManager::Select(int, int, int, const char*, int, const char*, int, const char*, const char*, const char*, const char*, const char*, int)': mmdb_selmngr.cpp:1161: warning: 'modelSel' may be used uninitialized in this function mmdb_selmngr.cpp: In member function 'void CMMDBSelManager::Select(int, int, int, const char*, int, const char*, int, const char*, const char*, const char*, const char*, const char*, const char*, const char*, realtype, realtype, realtype, realtype, realtype, realtype, int)': mmdb_selmngr.cpp:837: warning: 'modelSel' may be used uninitialized in this function g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c mmdb_selmngr.cpp -o mmdb_selmngr.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o stream_.lo stream_.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -fPIC -DPIC -o .libs/stream_.o g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c stream_.cpp -o stream_.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c -o hybrid_36.lo hybrid_36.cpp g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -fPIC -DPIC -o .libs/hybrid_36.o hybrid_36.cpp: In function 'const char* decode_pure(const int*, unsigned int, const char*, unsigned int, int*)': hybrid_36.cpp:141: warning: comparison between signed and unsigned integer expressions g++ -DHAVE_CONFIG_H -I. -I. -I.. -g -O2 -g -Wall -O2 -D_REENTRANT -c hybrid_36.cpp -o hybrid_36.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -g -Wall -O2 -D_REENTRANT -Wl,-Bsymbolic-functions -o libmmdb.la -rpath /usr/lib bfgs_min.lo mmdb_bondmngr.lo mmdb_manager.lo mmdb_symop.lo file_.lo mmdb_chain.lo mmdb_mask.lo mmdb_tables.lo linalg_.lo mmdb_cifdefs.lo mmdb_mmcif.lo mmdb_title.lo machine_.lo mmdb_coormngr.lo mmdb_model.lo mmdb_uddata.lo math_.lo mmdb_cryst.lo mmdb_rwbrook.lo mmdb_utils.lo mattype_.lo mmdb_ficif.lo mmdb_sbase0.lo mmdb_xml.lo mmdb_align.lo mmdb_file.lo mmdb_sbase.lo random_n.lo mmdb_atom.lo mmdb_graph.lo mmdb_selmngr.lo stream_.lo hybrid_36.lo g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnulp/4.4.0/../../../crti.o /usr/lib/gcc/i686-linux-gnulp/4.4.0/crtbeginS.o .libs/bfgs_min.o .libs/mmdb_bondmngr.o .libs/mmdb_manager.o .libs/mmdb_symop.o .libs/file_.o .libs/mmdb_chain.o .libs/mmdb_mask.o .libs/mmdb_tables.o .libs/linalg_.o .libs/mmdb_cifdefs.o .libs/mmdb_mmcif.o .libs/mmdb_title.o .libs/machine_.o .libs/mmdb_coormngr.o .libs/mmdb_model.o .libs/mmdb_uddata.o .libs/math_.o .libs/mmdb_cryst.o .libs/mmdb_rwbrook.o .libs/mmdb_utils.o .libs/mattype_.o .libs/mmdb_ficif.o .libs/mmdb_sbase0.o .libs/mmdb_xml.o .libs/mmdb_align.o .libs/mmdb_file.o .libs/mmdb_sbase.o .libs/random_n.o .libs/mmdb_atom.o .libs/mmdb_graph.o .libs/mmdb_selmngr.o .libs/stream_.o .libs/hybrid_36.o -L/usr/lib/gcc/i686-linux-gnulp/4.4.0 -L/usr/lib/gcc/i686-linux-gnulp/4.4.0/../../.. -L/usr/lib/i686-linux-gnulp -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnulp/4.4.0/crtendS.o /usr/lib/gcc/i686-linux-gnulp/4.4.0/../../../crtn.o -Wl,-Bsymbolic-functions -Wl,-soname -Wl,libmmdb.so.0 -o .libs/libmmdb.so.0.0.0 (cd .libs && rm -f libmmdb.so.0 && ln -s libmmdb.so.0.0.0 libmmdb.so.0) (cd .libs && rm -f libmmdb.so && ln -s libmmdb.so.0.0.0 libmmdb.so) ar cru .libs/libmmdb.a bfgs_min.o mmdb_bondmngr.o mmdb_manager.o mmdb_symop.o file_.o mmdb_chain.o mmdb_mask.o mmdb_tables.o linalg_.o mmdb_cifdefs.o mmdb_mmcif.o mmdb_title.o machine_.o mmdb_coormngr.o mmdb_model.o mmdb_uddata.o math_.o mmdb_cryst.o mmdb_rwbrook.o mmdb_utils.o mattype_.o mmdb_ficif.o mmdb_sbase0.o mmdb_xml.o mmdb_align.o mmdb_file.o mmdb_sbase.o random_n.o mmdb_atom.o mmdb_graph.o mmdb_selmngr.o stream_.o hybrid_36.o ranlib .libs/libmmdb.a creating libmmdb.la (cd .libs && rm -f libmmdb.la && ln -s ../libmmdb.la libmmdb.la) make[3]: Leaving directory `/build/buildd/mmdb-1.21/src' make[3]: Entering directory `/build/buildd/mmdb-1.21' cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make[3]: Leaving directory `/build/buildd/mmdb-1.21' make[2]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Leaving directory `/build/buildd/mmdb-1.21' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_clean -k dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/mmdb-1.21/debian/tmp/ make[1]: Entering directory `/build/buildd/mmdb-1.21' Making install in src make[2]: Entering directory `/build/buildd/mmdb-1.21/src' make[3]: Entering directory `/build/buildd/mmdb-1.21/src' test -z "/usr/lib" || mkdir -p -- "/build/buildd/mmdb-1.21/debian/tmp//usr/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c 'libmmdb.la' '/build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.la' /usr/bin/install -c .libs/libmmdb.so.0.0.0 /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.so.0.0.0 (cd /build/buildd/mmdb-1.21/debian/tmp//usr/lib && rm -f libmmdb.so.0 && ln -s libmmdb.so.0.0.0 libmmdb.so.0) (cd /build/buildd/mmdb-1.21/debian/tmp//usr/lib && rm -f libmmdb.so && ln -s libmmdb.so.0.0.0 libmmdb.so) /usr/bin/install -c .libs/libmmdb.lai /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.la /usr/bin/install -c .libs/libmmdb.a /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a chmod 644 /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a ranlib /build/buildd/mmdb-1.21/debian/tmp//usr/lib/libmmdb.a libtool: install: warning: remember to run `libtool --finish /usr/lib' test -z "/usr/include/mmdb" || mkdir -p -- "/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb" /usr/bin/install -c -m 644 'bfgs_min.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/bfgs_min.h' /usr/bin/install -c -m 644 'mmdb_atom.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_atom.h' /usr/bin/install -c -m 644 'mmdb_ficif.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_ficif.h' /usr/bin/install -c -m 644 'mmdb_rwbrook.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_rwbrook.h' /usr/bin/install -c -m 644 'mmdb_uddata.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_uddata.h' /usr/bin/install -c -m 644 'file_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/file_.h' /usr/bin/install -c -m 644 'mmdb_bondmngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_bondmngr.h' /usr/bin/install -c -m 644 'mmdb_file.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_file.h' /usr/bin/install -c -m 644 'mmdb_sbase0.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_sbase0.h' /usr/bin/install -c -m 644 'mmdb_utils.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_utils.h' /usr/bin/install -c -m 644 'linalg_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/linalg_.h' /usr/bin/install -c -m 644 'mmdb_chain.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_chain.h' /usr/bin/install -c -m 644 'mmdb_graph.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_graph.h' /usr/bin/install -c -m 644 'mmdb_sbase.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_sbase.h' /usr/bin/install -c -m 644 'mmdb_xml.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_xml.h' /usr/bin/install -c -m 644 'machine_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/machine_.h' /usr/bin/install -c -m 644 'mmdb_cifdefs.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_cifdefs.h' /usr/bin/install -c -m 644 'mmdb_manager.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_manager.h' /usr/bin/install -c -m 644 'mmdb_selmngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_selmngr.h' /usr/bin/install -c -m 644 'random_n.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/random_n.h' /usr/bin/install -c -m 644 'math_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/math_.h' /usr/bin/install -c -m 644 'mmdb_coormngr.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_coormngr.h' /usr/bin/install -c -m 644 'mmdb_mask.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_mask.h' /usr/bin/install -c -m 644 'mmdb_symop.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_symop.h' /usr/bin/install -c -m 644 'stream_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/stream_.h' /usr/bin/install -c -m 644 'mattype_.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mattype_.h' /usr/bin/install -c -m 644 'mmdb_cryst.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_cryst.h' /usr/bin/install -c -m 644 'mmdb_mmcif.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_mmcif.h' /usr/bin/install -c -m 644 'mmdb_tables.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_tables.h' /usr/bin/install -c -m 644 'mmdb_align.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_align.h' /usr/bin/install -c -m 644 'mmdb_defs.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_defs.h' /usr/bin/install -c -m 644 'mmdb_model.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_model.h' /usr/bin/install -c -m 644 'mmdb_title.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/mmdb_title.h' /usr/bin/install -c -m 644 'hybrid_36.h' '/build/buildd/mmdb-1.21/debian/tmp//usr/include/mmdb/hybrid_36.h' make[3]: Leaving directory `/build/buildd/mmdb-1.21/src' make[2]: Leaving directory `/build/buildd/mmdb-1.21/src' make[2]: Entering directory `/build/buildd/mmdb-1.21' make[3]: Entering directory `/build/buildd/mmdb-1.21' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/mmdb-1.21' make[2]: Leaving directory `/build/buildd/mmdb-1.21' make[1]: Leaving directory `/build/buildd/mmdb-1.21' dh_installdirs -plibmmdb-dev dh_installdirs -plibmmdb0 dh_installdocs -plibmmdb-dev ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb-dev dh_installman -plibmmdb-dev dh_installinfo -plibmmdb-dev dh_installmenu -plibmmdb-dev dh_installcron -plibmmdb-dev dh_installinit -plibmmdb-dev dh_installdebconf -plibmmdb-dev dh_installemacsen -plibmmdb-dev dh_installcatalogs -plibmmdb-dev dh_installpam -plibmmdb-dev dh_installlogrotate -plibmmdb-dev dh_installlogcheck -plibmmdb-dev dh_installchangelogs -plibmmdb-dev dh_installudev -plibmmdb-dev dh_lintian -plibmmdb-dev dh_install -plibmmdb-dev dh_link -plibmmdb-dev dh_installmime -plibmmdb-dev dh_installdocs -plibmmdb0 ./README ./NEWS ./AUTHORS dh_installexamples -plibmmdb0 dh_installman -plibmmdb0 dh_installinfo -plibmmdb0 dh_installmenu -plibmmdb0 dh_installcron -plibmmdb0 dh_installinit -plibmmdb0 dh_installdebconf -plibmmdb0 dh_installemacsen -plibmmdb0 dh_installcatalogs -plibmmdb0 dh_installpam -plibmmdb0 dh_installlogrotate -plibmmdb0 dh_installlogcheck -plibmmdb0 dh_installchangelogs -plibmmdb0 dh_installudev -plibmmdb0 dh_lintian -plibmmdb0 dh_install -plibmmdb0 dh_link -plibmmdb0 dh_installmime -plibmmdb0 dh_strip -plibmmdb-dev dh_strip debug symbol extraction: all non-arch-all packages for this build platform lpia: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb-dev dh_strip debug symbol extraction: ignored packages: dh_compress -plibmmdb-dev dh_fixperms -plibmmdb-dev dh_makeshlibs -plibmmdb-dev dh_strip -plibmmdb0 dh_strip debug symbol extraction: all non-arch-all packages for this build platform lpia: libmmdb-dev libmmdb0 dh_strip debug symbol extraction: packages to act on: libmmdb0 dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/libmmdb0-dbgsym/DEBIAN/control, package libmmdb0-dbgsym, directory ./debian/libmmdb0-dbgsym pkgstriptranslations: libmmdb0-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com dpkg-deb: building package `libmmdb0-dbgsym' in `../libmmdb0-dbgsym_1.21-0ubuntu1_lpia.ddeb'. dh_compress -plibmmdb0 dh_fixperms -plibmmdb0 dh_makeshlibs -plibmmdb0 dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libmmdb0/DEBIAN/symbols doesn't match completely debian/libmmdb0.symbols --- dpkg-gensymbolsIixsRs 2009-06-16 11:14:36.000000000 +0000 +++ dpkg-gensymbolsptRvC0 2009-06-16 11:14:36.000000000 +0000 @@ -1470,6 +1470,7 @@ _ZN15CChainContainer13MoveByChainIDEPcPS_@Base 1.09 _ZN15CChainContainer18MakeContainerClassEi@Base 1.09 _ZN15CChainContainer8SetChainEP6CChain@Base 1.09 + _ZN15CChainContainerC1Ev@Base 1.21-0ubuntu1 _ZN15CChainContainerD0Ev@Base 1.09 _ZN15CChainContainerD1Ev@Base 1.09 _ZN15CClassContainer12PDBASCIIDumpER5CFile@Base 1.09 @@ -1578,6 +1579,7 @@ _ZN15CMMDBSelManagerD1Ev@Base 1.09 _ZN15CMMDBSelManagerD2Ev@Base 1.09 _ZN15CTitleContainer18MakeContainerClassEi@Base 1.09 + _ZN15CTitleContainerC1Ev@Base 1.21-0ubuntu1 _ZN15CTitleContainerD0Ev@Base 1.09 _ZN15CTitleContainerD1Ev@Base 1.09 _ZN16CCisPepContainer18MakeContainerClassEi@Base 1.19 dh_installdeb -plibmmdb-dev dh_perl -plibmmdb-dev dh_shlibdeps -plibmmdb-dev dh_installdeb -plibmmdb0 dh_perl -plibmmdb0 dh_shlibdeps -plibmmdb0 dh_gencontrol -plibmmdb-dev # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb-dev/usr/share/doc ] || \ [ ! -d debian/libmmdb-dev/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb-dev/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb-dev/usr/share/doc/libmmdb-dev; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb-dev/usr/share/doc/libmmdb-dev/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb-dev to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency libmmdb0... symlinking ./README in libmmdb-dev to file in libmmdb0 symlinking ./AUTHORS in libmmdb-dev to file in libmmdb0 symlinking ./NEWS.gz in libmmdb-dev to file in libmmdb0 symlinking ./changelog.Debian.gz in libmmdb-dev to file in libmmdb0 # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb-dev/usr/share/gnome/help ]; then \ cd debian/libmmdb-dev && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb-dev dh_md5sums -plibmmdb-dev dh_builddeb -plibmmdb-dev pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com dpkg-deb: building package `libmmdb-dev' in `../libmmdb-dev_1.21-0ubuntu1_lpia.deb'. dh_gencontrol -plibmmdb0 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/libmmdb0/usr/share/doc ] || \ [ ! -d debian/libmmdb0/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/libmmdb0/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/libmmdb0/usr/share/doc/libmmdb0; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/libmmdb0/usr/share/doc/libmmdb0/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in libmmdb0 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/libmmdb0/usr/share/gnome/help ]; then \ cd debian/libmmdb0 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p libmmdb0 dh_md5sums -plibmmdb0 dh_builddeb -plibmmdb0 pkgstriptranslations: processing control file: ./debian/libmmdb-dev/DEBIAN/control, package libmmdb-dev, directory ./debian/libmmdb-dev pkgstriptranslations: libmmdb-dev does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/libmmdb0/DEBIAN/control, package libmmdb0, directory ./debian/libmmdb0 pkgstriptranslations: libmmdb0 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Not overriding Maintainer for domain ubuntu.com dpkg-deb: building package `libmmdb0' in `../libmmdb0_1.21-0ubuntu1_lpia.deb'. dpkg-genchanges -B -mUbuntu/lpia Build Daemon >../mmdb_1.21-0ubuntu1_lpia.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090616-1214 Publishing debug debs. chroot-autobuild/build/buildd/libmmdb-dev_1.21-0ubuntu1_lpia.deb: new debian package, version 2.0. size 502662 bytes: control archive= 1835 bytes. 1048 bytes, 26 lines control 2344 bytes, 37 lines md5sums Package: libmmdb-dev Source: mmdb Version: 1.21-0ubuntu1 Architecture: lpia Maintainer: Morten Kjeldgaard Installed-Size: 1812 Depends: libmmdb0 (= 1.21-0ubuntu1) Section: libdevel Priority: optional Homepage: http://www.ebi.ac.uk/~keb/cldoc/downloads/ Description: macromolecular coordinate library developer files MMDB, written by Eugene Krissinel of the EBI, is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains library and header files needed for program development. chroot-autobuild/build/buildd/libmmdb0_1.21-0ubuntu1_lpia.deb: new debian package, version 2.0. size 393966 bytes: control archive= 22189 bytes. 1094 bytes, 26 lines control 397 bytes, 6 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 19 bytes, 1 lines shlibs 149654 bytes, 3676 lines symbols Package: libmmdb0 Source: mmdb Version: 1.21-0ubuntu1 Architecture: lpia Maintainer: Morten Kjeldgaard Installed-Size: 1080 Depends: libc6 (>= 2.9), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.1.1) Section: libs Priority: optional Homepage: http://www.ebi.ac.uk/~keb/cldoc/downloads/ Description: macromolecular coordinate library MMDB, written by Eugene Krissinel of the EBI, is designed to assist developers in working with macromolecular coordinate files. The library handles both PDB and mmCIF format files. . The Library also features an internal binary format, portable between different platforms. This is achieved at uniformity of the Library's interface functions, so that there is no difference in handling different formats. . MMDB provides various high-level tools for working with coordinate files, including reading and writing, orthogonal-fractional transforms, generation of symmetry mates, editing the molecular structure and more. . This package contains the shared library components needed for programs that have been linked to the mmdb library. chroot-autobuild/build/buildd/libmmdb-dev_1.21-0ubuntu1_lpia.deb: drwxr-xr-x root/root 0 2009-06-16 12:14 ./ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb-dev/ -rw-r--r-- root/root 2584 2009-06-16 12:13 ./usr/share/doc/libmmdb-dev/copyright drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/include/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/include/mmdb/ -rw-r--r-- root/root 9808 2009-06-16 12:14 ./usr/include/mmdb/bfgs_min.h -rw-r--r-- root/root 12098 2009-06-16 12:14 ./usr/include/mmdb/file_.h -rw-r--r-- root/root 508 2009-06-16 12:14 ./usr/include/mmdb/hybrid_36.h -rw-r--r-- root/root 8115 2009-06-16 12:14 ./usr/include/mmdb/linalg_.h -rw-r--r-- root/root 13346 2009-06-16 12:14 ./usr/include/mmdb/machine_.h -rw-r--r-- root/root 2336 2009-06-16 12:14 ./usr/include/mmdb/math_.h -rw-r--r-- root/root 23486 2009-06-16 12:14 ./usr/include/mmdb/mattype_.h -rw-r--r-- root/root 5306 2009-06-16 12:14 ./usr/include/mmdb/mmdb_align.h -rw-r--r-- root/root 27135 2009-06-16 12:14 ./usr/include/mmdb/mmdb_atom.h -rw-r--r-- root/root 2189 2009-06-16 12:14 ./usr/include/mmdb/mmdb_bondmngr.h -rw-r--r-- root/root 22045 2009-06-16 12:14 ./usr/include/mmdb/mmdb_chain.h -rw-r--r-- root/root 19043 2009-06-16 12:14 ./usr/include/mmdb/mmdb_cifdefs.h -rw-r--r-- root/root 41559 2009-06-16 12:14 ./usr/include/mmdb/mmdb_coormngr.h -rw-r--r-- root/root 16136 2009-06-16 12:14 ./usr/include/mmdb/mmdb_cryst.h -rw-r--r-- root/root 9215 2009-06-16 12:14 ./usr/include/mmdb/mmdb_defs.h -rw-r--r-- root/root 12492 2009-06-16 12:14 ./usr/include/mmdb/mmdb_ficif.h -rw-r--r-- root/root 23914 2009-06-16 12:14 ./usr/include/mmdb/mmdb_file.h -rw-r--r-- root/root 13122 2009-06-16 12:14 ./usr/include/mmdb/mmdb_graph.h -rw-r--r-- root/root 4109 2009-06-16 12:14 ./usr/include/mmdb/mmdb_manager.h -rw-r--r-- root/root 2783 2009-06-16 12:14 ./usr/include/mmdb/mmdb_mask.h -rw-r--r-- root/root 27328 2009-06-16 12:14 ./usr/include/mmdb/mmdb_mmcif.h -rw-r--r-- root/root 32770 2009-06-16 12:14 ./usr/include/mmdb/mmdb_model.h -rw-r--r-- root/root 69233 2009-06-16 12:14 ./usr/include/mmdb/mmdb_rwbrook.h -rw-r--r-- root/root 5761 2009-06-16 12:14 ./usr/include/mmdb/mmdb_sbase.h -rw-r--r-- root/root 29050 2009-06-16 12:14 ./usr/include/mmdb/mmdb_sbase0.h -rw-r--r-- root/root 27710 2009-06-16 12:14 ./usr/include/mmdb/mmdb_selmngr.h -rw-r--r-- root/root 4840 2009-06-16 12:14 ./usr/include/mmdb/mmdb_symop.h -rw-r--r-- root/root 4005 2009-06-16 12:14 ./usr/include/mmdb/mmdb_tables.h -rw-r--r-- root/root 17338 2009-06-16 12:14 ./usr/include/mmdb/mmdb_title.h -rw-r--r-- root/root 4146 2009-06-16 12:14 ./usr/include/mmdb/mmdb_uddata.h -rw-r--r-- root/root 24247 2009-06-16 12:14 ./usr/include/mmdb/mmdb_utils.h -rw-r--r-- root/root 4499 2009-06-16 12:14 ./usr/include/mmdb/mmdb_xml.h -rw-r--r-- root/root 2277 2009-06-16 12:14 ./usr/include/mmdb/random_n.h -rw-r--r-- root/root 7792 2009-06-16 12:14 ./usr/include/mmdb/stream_.h drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/lib/ -rw-r--r-- root/root 1176862 2009-06-16 12:14 ./usr/lib/libmmdb.a drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 212 2009-06-16 12:13 ./usr/lib/pkgconfig/mmdb.pc lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb-dev/README -> ../libmmdb0/README lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb-dev/AUTHORS -> ../libmmdb0/AUTHORS lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb-dev/NEWS.gz -> ../libmmdb0/NEWS.gz lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb-dev/changelog.Debian.gz -> ../libmmdb0/changelog.Debian.gz lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/lib/libmmdb.so -> libmmdb.so.0.0.0 chroot-autobuild/build/buildd/libmmdb0_1.21-0ubuntu1_lpia.deb: drwxr-xr-x root/root 0 2009-06-16 12:14 ./ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/share/doc/libmmdb0/ -rw-r--r-- root/root 145 2009-05-05 14:07 ./usr/share/doc/libmmdb0/README -rw-r--r-- root/root 19 2009-05-01 14:28 ./usr/share/doc/libmmdb0/AUTHORS -rw-r--r-- root/root 2584 2009-06-16 12:13 ./usr/share/doc/libmmdb0/copyright -rw-r--r-- root/root 79 2009-05-06 14:48 ./usr/share/doc/libmmdb0/NEWS.gz -rw-r--r-- root/root 420 2009-06-16 12:13 ./usr/share/doc/libmmdb0/changelog.Debian.gz drwxr-xr-x root/root 0 2009-06-16 12:14 ./usr/lib/ -rw-r--r-- root/root 882608 2009-06-16 12:14 ./usr/lib/libmmdb.so.0.0.0 lrwxrwxrwx root/root 0 2009-06-16 12:14 ./usr/lib/libmmdb.so.0 -> libmmdb.so.0.0.0 mmdb_1.21-0ubuntu1_lpia.changes: Format: 1.8 Date: Tue, 16 Jun 2009 12:48:36 +0200 Source: mmdb Binary: libmmdb-dev libmmdb0 Architecture: lpia Version: 1.21-0ubuntu1 Distribution: karmic Urgency: low Maintainer: Ubuntu/lpia Build Daemon Changed-By: Morten Kjeldgaard Description: libmmdb-dev - macromolecular coordinate library developer files libmmdb0 - macromolecular coordinate library Changes: mmdb (1.21-0ubuntu1) karmic; urgency=low . * New upstream version. Checksums-Sha1: 5a025e3ed08afcb6d1fb0475cc414005b7e11062 502662 libmmdb-dev_1.21-0ubuntu1_lpia.deb 8f5cfdb5ec126b74dbb55fe31f504faf78546ade 393966 libmmdb0_1.21-0ubuntu1_lpia.deb Checksums-Sha256: 09ddbf14a67b59507c87f0a1df50f9acc11b8f422f8642fb30279c7df9fff1d4 502662 libmmdb-dev_1.21-0ubuntu1_lpia.deb 059ab36f2e2d58f9d8d349605877a72efca8d38534a8c2f908b54556a331481e 393966 libmmdb0_1.21-0ubuntu1_lpia.deb Files: 74f1ffd11621576808c661eac4d12f5a 502662 libdevel optional libmmdb-dev_1.21-0ubuntu1_lpia.deb fdfe0d2bd10dfaf41f7185114f3b60d6 393966 libs optional libmmdb0_1.21-0ubuntu1_lpia.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/mmdb-1.21 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-1079825-2345243/chroot-autobuild --purge intltool-debian groff-base libglib2.0-0 m4 gettext file libhtml-parser-perl intltool cdbs libwww-perl liburi-perl html2text diffstat gettext-base debhelper libhtml-tree-perl autotools-dev po-debconf quilt libxml-parser-perl libcroco3 libmagic1 libhtml-tagset-perl libxml2 libexpat1 netbase bsdmainutils fdupes automake man-db autoconf (Reading database ... 11118 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing po-debconf ... Removing quilt ... Purging configuration files for quilt ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db/examples' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man/id/man5' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/bug/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/lib/man-db' not empty so not removed. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... 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Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090616-1214 Build needed 00:01:34, 26144k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1079825-2345243'] Scanning for processes to kill in build 1079825-2345243... Scanning for processes to kill in build /home/buildd/build-1079825-2345243/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1079825-2345243'] Unmounting chroot for build 1079825-2345243... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1079825-2345243'] Removing build 1079825-2345243