minimap2 2.27+dfsg-1 source package in Ubuntu

Changelog

minimap2 (2.27+dfsg-1) unstable; urgency=medium

  * Team upload.
  * d/rules, d/clean: simply cleanup code.
  * d/rules: clean using pybuild. Closes: #1046060

 -- Michael R. Crusoe <email address hidden>  Mon, 18 Mar 2024 17:12:17 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular release universe misc

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File Size SHA-256 Checksum
minimap2_2.27+dfsg-1.dsc 2.3 KiB 241b7cbf3f321971335a39a323aad0bdd91b07d534a0ef8e4ede2c171fc66375
minimap2_2.27+dfsg.orig.tar.xz 195.8 KiB 3ee11256b940a750072baa0f70e32187f61613f83d3936eb0a5eaedff1cf16df
minimap2_2.27+dfsg-1.debian.tar.xz 11.3 KiB 45d509d32766d87c4ca3c8ed7310e2758794418e0c53918fda09f45f8cac5826

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Binary packages built by this source

libminimap2-dev: development headers for libminimap

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 This package contains the C library headers for using minimap in custom tools,
 along with a static library.

minimap2: versatile pairwise aligner for genomic and spliced nucleotide sequences

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 For ~10kb noisy reads sequences, minimap2 is tens of times faster than
 mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It
 is more accurate on simulated long reads and produces biologically
 meaningful alignment ready for downstream analyses. For >100bp Illumina
 short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and
 as accurate on simulated data. Detailed evaluations are available from
 the minimap2 paper or the preprint.

minimap2-dbgsym: debug symbols for minimap2
python3-mappy: Python3 interface minimap2

 Minimap2 is a versatile sequence alignment program that aligns DNA or
 mRNA sequences against a large reference database. Typical use cases
 include: (1) mapping PacBio or Oxford Nanopore genomic reads to the
 human genome; (2) finding overlaps between long reads with error rate up
 to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA
 or Direct RNA reads against a reference genome; (4) aligning Illumina
 single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-
 genome alignment between two closely related species with divergence
 below ~15%.
 .
 This package contains the Python3 interface for using minimap2.

python3-mappy-dbgsym: debug symbols for python3-mappy