Change log for libbpp-seq package in Ubuntu

libbpp-seq (2.4.1-12build2) noble; urgency=medium

  * No-change rebuild against libbpp-core4t64

 -- Steve Langasek <email address hidden>  Sun, 07 Apr 2024 07:28:55 +0000

Available diffs

• diff from 2.4.1-12build1 to 2.4.1-12build2 (315 bytes)

libbpp-seq (2.4.1-12build1) noble; urgency=medium

  * No-change rebuild for CVE-2024-3094

 -- Steve Langasek <email address hidden>  Sun, 31 Mar 2024 18:52:12 +0000

Available diffs

• diff from 2.4.1-12 (in Debian) to 2.4.1-12build1 (519 bytes)

libbpp-seq (2.4.1-12) unstable; urgency=medium

  * Team upload.
  * Silence another lintian warning
  * d/patches/spelling: forward upstream
  * d/patches/unforce-cxxflags.patch: improve and forward upstream.

 -- Michael R. Crusoe <email address hidden>  Mon, 25 Mar 2024 19:38:05 +0100

Available diffs

• diff from 2.4.1-10 to 2.4.1-12 (44.0 KiB)
• diff from 2.4.1-10.1ubuntu1 (in Ubuntu) to 2.4.1-12 (2.6 KiB)

libbpp-seq (2.4.1-10.1ubuntu1) noble; urgency=medium

  * libbpp-seq12t64: Remove hard-coded dependency on libbpp-core4.

 -- dann frazier <email address hidden>  Sat, 23 Mar 2024 23:26:04 -0600

Available diffs

• diff from 2.4.1-10.1build1 to 2.4.1-10.1ubuntu1 (693 bytes)

libbpp-seq (2.4.1-10.1build1) noble; urgency=medium

  * No-change rebuild against libbpp-core4t64

 -- Michael Hudson-Doyle <email address hidden>  Wed, 20 Mar 2024 13:35:38 +1300

Available diffs

• diff from 2.4.1-10.1 (in Debian) to 2.4.1-10.1build1 (326 bytes)

libbpp-seq (2.4.1-10.1) unstable; urgency=medium

  * Non-maintainer upload.
  * Rename libraries for 64-bit time_t transition.  Closes: #1062240

 -- Lukas Märdian <email address hidden>  Thu, 29 Feb 2024 10:13:25 +0000

libbpp-seq (2.4.1-10) unstable; urgency=medium

  * Team upload.
  * Standards-Version: 4.6.2 (routine-update)
  * Update symbols for gcc-13. Closes: #1037721, #1042204
  * d/patches/spelling: fix a typo
  * d/control: Use ${devlibs:Depends} for the -dev package.

 -- Michael R. Crusoe <email address hidden>  Sun, 13 Aug 2023 13:21:18 +0200

Available diffs

• diff from 2.4.1-9 to 2.4.1-10 (3.4 KiB)

libbpp-seq (2.4.1-9) unstable; urgency=medium

  * Fix watch file

 -- Andreas Tille <email address hidden>  Mon, 28 Nov 2022 18:00:15 +0100

Available diffs

• diff from 2.4.1-8 to 2.4.1-9 (457 bytes)

libbpp-seq (2.4.1-8) unstable; urgency=medium

  * Adapt symbols to gcc-12
    Closes: #1012971
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <email address hidden>  Sun, 24 Jul 2022 16:06:08 +0200

Available diffs

• diff from 2.4.1-7 to 2.4.1-8 (2.7 KiB)

libbpp-seq (2.4.1-7) unstable; urgency=medium

  * Really fix symbols file

 -- Andreas Tille <email address hidden>  Fri, 22 Oct 2021 07:26:58 +0200

Available diffs

• diff from 2.4.1-5 to 2.4.1-7 (2.3 KiB)
• diff from 2.4.1-6 to 2.4.1-7 (1.1 KiB)

libbpp-seq (2.4.1-6) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * Fix ftbfs with gcc-11
    Closes: #984094

 -- Andreas Tille <email address hidden>  Mon, 11 Oct 2021 10:35:48 +0200

libbpp-seq (2.4.1-5) unstable; urgency=medium

  * Standards-Version: 4.5.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Refer to specific version of license GPL-2+.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata (already
    present in machine-readable debian/copyright).
  * Update symbols for gcc-10
    Closes: #957428

 -- Andreas Tille <email address hidden>  Thu, 23 Jul 2020 11:33:45 +0200

Available diffs

• diff from 2.4.1-4build1 (in Ubuntu) to 2.4.1-5 (5.1 KiB)

libbpp-seq (2.4.1-4build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Mon, 23 Mar 2020 07:17:54 +0100

Available diffs

• diff from 2.4.1-4 (in Debian) to 2.4.1-4build1 (336 bytes)

libbpp-seq (2.4.1-4) unstable; urgency=medium

  * Rebuild for new version of gcc to fix symbols
    Closes: #925736
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Set upstream metadata fields: Contact, Name.

 -- Andreas Tille <email address hidden>  Tue, 20 Aug 2019 16:07:58 +0200

Available diffs

• diff from 2.4.1-3 to 2.4.1-4 (44.1 KiB)

libbpp-seq (2.4.1-3) unstable; urgency=medium

  * Rebuild for new version of gcc to fix symbols
    Closes: #923954
  * Standards-Version: 4.3.0

 -- Andreas Tille <email address hidden>  Thu, 07 Mar 2019 18:56:16 +0100

Available diffs

• diff from 2.4.1-2 to 2.4.1-3 (1.7 KiB)

libbpp-seq (2.4.0-2ubuntu0.1) bionic-proposed; urgency=medium

  * SRU: LP: #1815080.
  * Add more template symbols to the symbols file (generated by GCC 7.4),
    and mark them as optional.

 -- Matthias Klose <email address hidden>  Thu, 07 Feb 2019 17:54:07 +0100

Available diffs

• diff from 2.4.0-2 (in Debian) to 2.4.0-2ubuntu0.1 (712 bytes)

libbpp-seq (2.4.1-2) unstable; urgency=medium

  [ Jelmer Vernooij ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * Fix symbols file
    Closes: #915342
  * Standards-Version: 4.2.1
  * Remove trailing whitespace in debian/copyright

 -- Andreas Tille <email address hidden>  Mon, 03 Dec 2018 08:15:45 +0100

Available diffs

• diff from 2.4.1-1 to 2.4.1-2 (1.9 KiB)

libbpp-seq (2.4.1-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version
    Closes: #897784

  [ Andreas Tille ]
  * Standards-Version: 4.2.0

 -- Julien Dutheil <email address hidden>  Sun, 19 Aug 2018 11:45:47 +0200

Available diffs

• diff from 2.4.0-2 to 2.4.1-1 (48.3 KiB)

libbpp-seq (2.4.0-2) unstable; urgency=medium

  [ Julien Dutheil ]
  * Provide symbols file only for amd64
  
  [ Andreas Tille ]
  * Provide full license text of CeCILL license

 -- Julien Dutheil <email address hidden>  Sun, 08 Apr 2018 08:04:59 +0200

Available diffs

• diff from 2.3.1-8 to 2.4.0-2 (103.9 KiB)
• diff from 2.4.0-1 to 2.4.0-2 (8.4 KiB)

libbpp-seq (2.4.0-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Andreas Tille ]
  * Add symbols file

 -- Andreas Tille <email address hidden>  Sun, 25 Mar 2018 14:14:44 +0100

Available diffs

• diff from 2.3.2-1 to 2.4.0-1 (66.2 KiB)

libbpp-seq (2.3.2-1) unstable; urgency=medium

  [ Julien Dutheil ]
  * New upstream version

  [ Andreas Tille ]
  * Standards-Version: 4.1.3
  * cme fix dpkg-control
  * debhelper 11

 -- Julien Dutheil <email address hidden>  Mon, 05 Feb 2018 17:36:38 +0200

libbpp-seq (2.3.1-8) unstable; urgency=medium

  * Rebuild with gcc-7
  * Standards-Version: 4.0.1

 -- Andreas Tille <email address hidden>  Wed, 23 Aug 2017 19:38:40 +0200

Available diffs

• diff from 2.3.1-7 to 2.3.1-8 (1.1 KiB)

libbpp-seq (2.3.1-7) unstable; urgency=medium

  * Make tests work on 32 bits archs (enabled position independent code).

 -- Julien Dutheil <email address hidden>  Tue, 18 Jul 2017 21:01:24 +0200

Available diffs

• diff from 2.3.1-5 to 2.3.1-7 (1.6 KiB)
• diff from 2.3.1-6 to 2.3.1-7 (815 bytes)

libbpp-seq (2.3.1-6) unstable; urgency=medium

  * Increased timeout threshold for Bowker test to pass on all arch.
  * Removed postins scripts.

 -- Julien Dutheil <email address hidden>  Mon, 17 Jul 2017 22:29:29 +0200

Available diffs

• diff from 2.3.1-5 to 2.3.1-6 (1.4 KiB)

libbpp-seq (2.3.1-5) unstable; urgency=medium

  [ Julien Dutheil ]
  * Removed unused class VectorProbabilisticSiteContainer

  [ Andreas Tille ]
  * debhelper 10

 -- Julien Dutheil <email address hidden>  Thu, 13 Jul 2017 08:52:31 +0200

Available diffs

• diff from 2.3.1-4 to 2.3.1-5 (3.4 KiB)

libbpp-seq (2.3.1-4) unstable; urgency=medium

  * do not install broken header (Thanks for the patch to Steve Langasek
    <email address hidden>)
    Closes: #866069
  * d-shlibs (>= 0.80) contains needed override

 -- Andreas Tille <email address hidden>  Tue, 27 Jun 2017 08:35:18 +0200

Available diffs

• diff from 2.3.1-3ubuntu1 (in Ubuntu) to 2.3.1-4 (998 bytes)

libbpp-seq (2.3.1-3ubuntu1) artful; urgency=medium

  * debian/rules: Container/VectorProbabilisticSiteContainer.h is broken and
    unusable; so don't install it, since if it's installed the postinst will
    pull it into a generic include file.

 -- Steve Langasek <email address hidden>  Tue, 27 Jun 2017 04:01:19 +0000

Available diffs

• diff from 2.2.0-1 (in Debian) to 2.3.1-3ubuntu1 (104.3 KiB)
• diff from 2.3.1-3 (in Debian) to 2.3.1-3ubuntu1 (786 bytes)

libbpp-seq (2.3.1-3) unstable; urgency=medium

  * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH)
    Closes: #865529
  * hardening=+all
  * do not ignore test failures
  * Standards-Version: 4.0.0 (no changes needed)

 -- Andreas Tille <email address hidden>  Thu, 22 Jun 2017 21:52:59 +0200

Available diffs

• diff from 2.3.1-2 to 2.3.1-3 (1.2 KiB)

libbpp-seq (2.3.1-2) unstable; urgency=medium

  * Make sure cmake files will be installed also on i386

 -- Andreas Tille <email address hidden>  Thu, 22 Jun 2017 07:58:04 +0200

Available diffs

• diff from 2.3.1-1 to 2.3.1-2 (489 bytes)

libbpp-seq (2.3.1-1) unstable; urgency=medium

  * New upstream version
  * d/watch: point to github

 -- Andreas Tille <email address hidden>  Tue, 13 Jun 2017 13:35:29 +0200

libbpp-seq (2.2.0-1) unstable; urgency=medium

  * New upstream version
  * Packaging moved to Git
  * Better description
  * Team maintenance in Debian Med team
  * Add watch file
  * debhelper 9
  * DEP5
  * short dh rules file using d-shlibs
  * Library transition
    Closes: #791099

 -- Andreas Tille <email address hidden>  Wed, 13 Apr 2016 15:17:21 +0200

Available diffs

• diff from 2.1.0-1ubuntu3 (in Ubuntu) to 2.2.0-1 (106.1 KiB)

libbpp-seq (2.1.0-1ubuntu3) wily; urgency=medium

  * Bah, remove hardcoded dep on libbpp-core (old package name)

 -- Iain Lane <email address hidden>  Tue, 11 Aug 2015 12:52:55 +0100

Available diffs

• diff from 2.1.0-1 (in Debian) to 2.1.0-1ubuntu3 (1.0 KiB)
• diff from 2.1.0-1ubuntu2 to 2.1.0-1ubuntu3 (501 bytes)

libbpp-seq (2.1.0-1ubuntu2) wily; urgency=medium

  * No-change rebuild against new libbpp-core

 -- Iain Lane <email address hidden>  Tue, 11 Aug 2015 12:36:29 +0100

Available diffs

• diff from 2.1.0-1ubuntu1 to 2.1.0-1ubuntu2 (338 bytes)

libbpp-seq (2.1.0-1ubuntu1) wily; urgency=medium

  * Rename library packages for g++5 ABI transition.

 -- Steve Langasek <email address hidden>  Tue, 04 Aug 2015 04:43:14 +0000

Available diffs

• diff from 2.1.0-1 (in Debian) to 2.1.0-1ubuntu1 (909 bytes)

libbpp-seq (2.1.0-1) unstable; urgency=low


  * 'omics' tools now in bpp-seq-omics
  * Extended BppO support
  * StateProperties renamed to AlphabetIndex

 -- Julien Dutheil <email address hidden>  Tue, 05 Mar 2013 14:31:00 +0100

Available diffs

• diff from 2.0.3-1 to 2.1.0-1 (198.1 KiB)

libbpp-seq (2.0.3-1) unstable; urgency=low


  * Bugs fixed in maf parser + new iterators
  * Added support for GFF
  * Added support for FastQ
  * Several bugs fixed

 -- Julien Dutheil <email address hidden>  Thu, 09 Feb 2012 14:00:00 +0100

Available diffs

• diff from 2.0.2-1 (in Ubuntu) to 2.0.3-1 (55.3 KiB)

libbpp-seq (2.0.2-1) unstable; urgency=low

  * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373).
  * Packages are now non-native.
  * Bugs fixed in maf parser.