kmc 3.2.2+dfsg-2 source package in Ubuntu
Changelog
kmc (3.2.2+dfsg-2) unstable; urgency=medium
* d/clean: new: cleanup various build artifacts. (Closes: #1049134)
* d/rules: remove unnecessary dh_auto_clean override.
The further files cleansed have been listed in d/clean.
* spelling.patch: further fixes against typos.
-- Étienne Mollier <email address hidden> Tue, 05 Dec 2023 17:54:14 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| kmc_3.2.2+dfsg-2.dsc | 2.3 KiB | 533fd128bcd326d8f8efaafb2c42259be4b0b40c3ee362dab641c350ed5939ba |
| kmc_3.2.2+dfsg.orig.tar.xz | 398.7 KiB | a6a489733333902f3e19bf5f6eec4a7b81f438c1b5ece65e4686b7aef41b1f36 |
| kmc_3.2.2+dfsg-2.debian.tar.xz | 33.0 KiB | 30b345509ad53da746a680cd34b4ca8b83f7af7920339456b04d5c8797b526be |
Available diffs
- diff from 3.2.2+dfsg-1 to 3.2.2+dfsg-2 (1.6 KiB)
No changes file available.
Binary packages built by this source
- kmc: count kmers in genomic sequences
The kmc software is designed for counting k-mers (sequences of
consecutive k symbols) in a set of reads. K-mer counting is
important for many bioinformatics applications, e.g. developing de Bruijn
graph assemblers.
.
Building de Bruijn graphs is a commonly used approach for genome
assembly with data from second-generation sequencing.
Unfortunately, sequencing errors (frequent in practice)
result in huge memory requirements for de Bruijn graphs, as well
as long build time. One of the popular approaches to handle this
problem is filtering the input reads in such a way that unique k-mers
(very likely obtained as a result of an error) are discarded.
.
Thus, KMC scans the raw reads and produces a compact representation
of all non-unique reads accompanied with number of their occurrences.
The algorithm implemented in KMC makes use mostly of disk space rather
than RAM, which allows one to use KMC even on rather typical personal
computers. When run on high-end servers (what is necessary for KMC
competitors) it outperforms them in both memory requirements and
speed of computation. The disk space necessary for computation is in
order of the size of input data (usually it is smaller).
- kmc-dbgsym: debug symbols for kmc
- libkmc-dev: library to access KMC k-mer count files
The kmc software is designed for counting k-mers (sequences of
consecutive k symbols) in a set of reads. K-mer counting is
important for many bioinformatics applications, e.g. developing de Bruijn
graph assemblers.
.
This package contains the C++ library headers for accessing kmc's output
file format.
