infernal 1.1.3-2 source package in Ubuntu
Changelog
infernal (1.1.3-2) unstable; urgency=medium
* Team upload.
* Add python3 build-dep for `make check`
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Trim trailing whitespace.
* Set upstream metadata fields: Bug-Submit.
* Enable a verbose build log
* infernal-doc: mark Multi-Arch: foreign (thanks Multiarch hinter!)
* debian/patches/hardening: added CPPFLAGS to easel, rmark, and hmmer/profmark
* Install example binaries into /usr/lib/ and symlink them into the
doc/infernal/examples directory (fixes a FHS violation)
* Added missing autopkgtest dependency on python3
-- Michael R. Crusoe <email address hidden> Sun, 01 Dec 2019 16:35:34 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64 any-i386 all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| infernal_1.1.3-2.dsc | 2.1 KiB | c92dcc1a8774f2b08a8037bbb239e42e3c05abc1e37045c08f58f7f3684d3515 |
| infernal_1.1.3.orig.tar.gz | 28.5 MiB | 3b98a6a3a0e7b01aa077a0caf1e958223c4d8f80a69a4eb602ca59a3475da85e |
| infernal_1.1.3-2.debian.tar.xz | 12.4 KiB | 03efa475bd0e41e88ee5c89da8f887a6b59ce02b1e17e8d65dbc729878592e10 |
Available diffs
- diff from 1.1.2-2 to 1.1.3-2 (16.7 MiB)
- diff from 1.1.3-1 to 1.1.3-2 (3.6 KiB)
No changes file available.
Binary packages built by this source
- infernal: inference of RNA secondary structural alignments
Infernal ("INFERence of RNA ALignment") searches DNA sequence
databases for RNA structure and sequence similarities. It provides an
implementation of a special variant of profile stochastic context-free
grammars called covariance models (CMs). A CM is like a sequence
profile, but it scores a combination of sequence consensus and RNA
secondary structure consensus, so in many cases, it is more capable of
identifying RNA homologs that conserve their secondary structure more
than their primary sequence.
.
The tool is an integral component of the Rfam database.
- infernal-dbgsym: debug symbols for infernal
- infernal-doc: inference of RNA secondary structural alignments – documentation
Infernal ("INFERence of RNA ALignment") searches DNA sequence
databases for RNA structure and sequence similarities. It provides an
implementation of a special case of profile stochastic context-free
grammars called covariance models (CMs). A CM is like a sequence
profile, but it scores a combination of sequence consensus and RNA
secondary structure consensus, so in many cases, it is more capable of
identifying RNA homologs that conserve their secondary structure more
than their primary sequence.
.
This package provides the documentation which is shipped with the
code of infernal.
