Ubuntu
fasta3 package

fasta3 36.3.8h-2 source package in Ubuntu

Changelog

fasta3 (36.3.8h-2) unstable; urgency=medium

  * Team upload.
  * Breaks+Replaces: fasta3 (<< 36.3.8h)
    Closes: #948597
  * Remove trailing whitespace in debian/copyright
  * Remove trailing whitespace in debian/rules
  * Trim trailing whitespace.
  * Use secure URI in Homepage field.
  * Fix regexp in d/copyright
  * Package fasta3-doc in section non-free/doc

 -- Andreas Tille <email address hidden>  Sat, 11 Jan 2020 06:55:15 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release multiverse misc

Downloads

File Size SHA-256 Checksum
fasta3_36.3.8h-2.dsc 2.0 KiB 4234358938ffd55e7534a2c5f66cc94b65600b57f178ece33aaa7bf9c718f66a
fasta3_36.3.8h.orig.tar.gz 1.2 MiB 1d38c961b34b8aabc8360ea068bf50b7446efd318f99c8d28b3f5d25c66a7267
fasta3_36.3.8h-2.debian.tar.xz 4.5 KiB fab9b548d20d59a22deb124e3a7f843eb04f89e3fce169b8aad8be835382cf24

Available diffs

No changes file available.

Binary packages built by this source

fasta3: tools for searching collections of biological sequences

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
  * Protein
    - Protein-protein FASTA
    - Protein-protein Smith-Waterman (ssearch)
    - Global Protein-protein (Needleman-Wunsch) (ggsearch)
    - Global/Local protein-protein (glsearch)
    - Protein-protein with unordered peptides (fasts)
    - Protein-protein with mixed peptide sequences (fastf)
 .
  * Nucleotide
    - Nucleotide-Nucleotide (DNA/RNA fasta)
    - Ordered Nucleotides vs Nucleotide (fastm)
    - Un-ordered Nucleotides vs Nucleotide (fasts)
 .
  * Translated
    - Translated DNA (with frameshifts, e.g. ESTs)
      vs Proteins (fastx/fasty)
    - Protein vs Translated DNA (with frameshifts)
      (tfastx/tfasty)
    - Peptides vs Translated DNA (tfasts)
 .
  * Statistical Significance
    - Protein vs Protein shuffle (prss)
    - DNA vs DNA shuffle (prss)
    - Translated DNA vs Protein shuffle (prfx)
 .
  * Local Duplications
    - Local Protein alignments (lalign)
    - Plot Protein alignment "dot-plot" (plalign)
    - Local DNA alignments (lalign)
    - Plot DNA alignment "dot-plot" (plalign)
 .
 This software is often used via a web service at the
 EBI with readily indexed reference databases at
 http://www.ebi.ac.uk/Tools/fasta/.

fasta3-dbgsym: No summary available for fasta3-dbgsym in ubuntu groovy.

No description available for fasta3-dbgsym in ubuntu groovy.

fasta3-doc: user guide for FASTA tools

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
 The use of the package's many binaries and the equally representated
 conceptual approaches towards sequence analyses are summarised in
 this PDF.